genome.fa.s8992.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008992.1 Hibiscus syriacus cultivar Beakdansim tig00112368_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151563

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7499--7589	45	2.0	45	95	0	164	59	7	14	18	1.58
8064--8774	161	4.4	162	85	4	787	29	25	16	28	1.97
8064--8783	55	13.2	54	84	5	732	29	25	16	28	1.97
8789--8869	37	2.2	37	93	0	135	22	23	16	38	1.93
10131--10178	23	2.2	22	89	10	73	6	16	0	77	0.97
10140--10258	9	13.6	9	68	22	58	7	21	0	70	1.17
10141--10266	18	7.2	16	73	15	65	7	21	0	70	1.16
19909--20073	45	3.5	47	77	10	140	37	20	12	29	1.89
19927--20069	45	3.1	45	85	7	180	38	20	11	29	1.88
22396--22486	45	2.0	45	97	0	173	59	8	14	17	1.60
26961--26985	12	2.1	12	100	0	50	40	16	16	28	1.89
30572--30617	24	2.0	23	87	12	67	45	15	0	39	1.46
34500--34568	21	3.3	21	87	0	93	20	17	52	10	1.73
40461--40492	16	2.0	16	93	0	55	46	0	0	53	1.00
41239--41314	36	2.1	36	90	0	116	31	13	38	17	1.88
41332--41380	12	4.0	12	81	2	53	18	46	22	12	1.82
41990--42058	23	3.0	23	86	0	102	33	18	10	37	1.85
43574--43615	18	2.2	19	83	8	50	64	2	2	30	1.19
44996--45036	20	2.0	20	86	9	57	65	7	0	26	1.18
45831--45914	41	2.0	41	90	0	132	17	20	25	36	1.94
45998--46055	6	9.7	6	100	0	116	34	50	15	0	1.45
46064--46220	21	7.6	21	69	9	117	35	26	21	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46055--46299	41	6.1	41	86	9	337	36	24	21	17	1.94
46192--46307	35	3.2	34	78	18	135	35	25	19	19	1.96
46226--46295	20	3.3	21	72	6	70	34	25	18	21	1.96
46238--46303	21	3.2	21	73	4	80	37	27	18	16	1.92
48267--48471	42	4.8	42	77	10	211	27	20	23	28	1.99
48267--48471	84	2.4	85	83	7	254	27	20	23	28	1.99
51672--52170	263	1.9	260	86	4	707	43	22	8	25	1.80
51943--52902	221	4.3	225	88	4	1321	41	23	10	24	1.85
51981--52907	227	4.1	232	88	4	1271	41	23	10	24	1.86
53614--53659	19	2.4	19	100	0	92	58	4	8	28	1.47
54192--54238	17	2.5	19	76	20	53	36	2	0	61	1.08
59925--60006	41	2.0	41	100	0	164	34	17	17	31	1.93
66537--66700	59	2.7	58	82	8	188	30	23	6	40	1.79
66512--66700	60	3.2	59	80	7	177	29	23	5	40	1.78
68966--69018	23	2.3	23	90	0	79	32	26	18	22	1.97
68940--69050	21	5.1	21	73	19	77	32	24	18	25	1.97
69012--69060	21	2.3	21	92	0	80	34	28	12	24	1.91
69697--69739	21	2.0	21	95	0	77	27	27	20	23	1.99
69775--69811	19	1.9	19	100	0	74	16	27	43	13	1.85
69849--69947	21	5.0	21	81	16	122	12	28	38	21	1.89
69871--69899	14	2.0	15	93	6	51	13	27	34	24	1.93
69850--69920	35	2.0	36	94	2	126	11	28	38	22	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70037--70096	29	2.0	31	93	6	106	43	16	6	33	1.74
72262--72331	34	2.1	32	86	5	95	22	30	15	31	1.95
72545--72584	21	1.9	22	90	10	66	12	10	40	37	1.77
72612--72654	21	2.0	21	95	0	77	27	27	20	23	1.99
72690--72732	21	2.0	21	100	0	86	13	27	44	13	1.83
72790--72819	15	2.0	15	100	0	60	13	26	33	26	1.93
72767--72846	21	4.0	21	75	20	82	12	26	37	23	1.90
72936--72995	29	2.0	31	93	6	106	43	16	6	33	1.74
73070--73103	16	2.1	16	89	10	52	23	17	5	52	1.66
73541--73685	54	2.7	54	84	7	161	27	21	19	31	1.97
73655--73735	20	3.9	21	76	7	85	32	28	11	28	1.91
80029--80084	28	2.0	28	82	6	69	33	0	3	62	1.12
80041--80095	29	2.0	27	82	7	65	32	1	1	63	1.15
82677--82712	15	2.4	15	100	0	72	11	19	25	44	1.83
97070--97132	22	3.0	22	77	17	80	26	26	20	25	1.99
97090--97126	18	2.1	18	94	0	65	27	29	21	21	1.99
100324--100369	14	3.3	14	96	0	83	6	13	28	52	1.65
105659--105992	166	2.0	167	99	0	661	36	11	10	41	1.75
112657--112681	12	2.1	12	100	0	50	24	0	8	68	1.16
115784--116102	83	3.8	83	85	0	413	30	20	17	31	1.96
126138--126183	17	2.9	16	72	18	51	71	2	0	26	0.97
127165--127202	16	2.3	17	86	4	51	28	7	15	47	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127942--127983	16	2.8	16	82	10	54	50	0	0	50	1.00
127928--127980	28	1.9	27	88	3	79	50	1	0	47	1.12
145042--145116	28	2.5	30	79	10	75	42	13	9	34	1.76
149413--149448	2	18.0	2	100	0	72	50	0	0	50	1.00
151369--151432	21	3.1	21	81	4	76	21	17	31	29	1.96

Tables:   1

The End!