genome.fa.s8995.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008995.1 Hibiscus syriacus cultivar Beakdansim tig00112371_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  137607

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17060--17102	22	2.0	22	90	0	68	4	16	0	79	0.90
17077--17110	8	4.1	8	88	7	50	2	11	0	85	0.71
17067--17110	22	2.0	22	91	8	72	2	15	0	81	0.78
18251--18302	21	2.5	21	75	12	61	44	11	19	25	1.84
20029--20140	35	3.2	35	85	1	143	29	36	3	30	1.74
22268--22307	21	1.9	21	84	0	53	2	12	2	82	0.87
22760--22797	14	2.8	13	88	7	58	36	0	39	23	1.55
25571--25608	12	3.2	12	85	11	51	2	13	2	81	0.90
26054--26089	14	2.7	13	86	4	54	33	0	41	25	1.55
28975--29014	18	2.2	19	86	8	57	0	15	7	77	0.98
29775--29824	19	2.5	20	90	3	75	44	6	12	38	1.66
32214--32261	25	1.9	25	82	0	60	2	16	4	77	1.03
32287--32327	13	3.2	13	80	19	59	0	12	7	80	0.90
32714--32763	14	3.6	14	86	2	57	36	0	40	24	1.55
33104--33153	19	2.6	19	93	0	82	44	8	14	34	1.74
33444--33502	24	2.5	24	94	0	100	22	11	35	30	1.90
33616--33691	30	2.5	30	100	0	152	22	31	15	30	1.95
38857--38916	15	3.9	15	86	6	75	0	6	11	81	0.86
38857--38924	8	8.6	8	82	9	86	0	5	11	82	0.83
38843--38916	16	4.5	17	81	14	84	1	8	12	78	1.02
41649--41689	6	6.7	6	83	5	55	0	14	4	80	0.87
42079--42125	14	3.4	14	85	2	60	29	0	44	25	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42466--42515	19	2.6	19	87	0	73	44	8	12	36	1.71
42806--42864	24	2.5	24	97	0	109	20	11	37	30	1.89
44037--44090	24	2.2	24	83	9	65	27	25	14	31	1.95
44374--44420	24	2.0	24	86	0	67	23	23	14	38	1.92
45684--45728	23	2.0	23	81	0	54	2	17	2	77	0.97
50804--50834	15	2.1	15	93	0	53	48	0	29	22	1.51
50979--51028	14	3.6	14	91	2	84	34	0	40	26	1.56
51907--52035	59	2.2	59	100	0	258	31	22	14	31	1.94
56069--56096	9	3.1	9	100	0	56	78	0	10	10	0.96
59980--60022	14	2.9	15	82	10	52	2	13	2	81	0.89
68877--68929	21	2.4	21	78	6	61	3	16	1	77	1.01
69204--69234	15	2.1	15	93	0	53	48	0	29	22	1.51
69391--69427	14	2.8	13	88	8	56	32	0	40	27	1.57
72261--72300	20	1.9	20	85	10	53	32	7	32	27	1.85
76527--76566	20	1.9	20	85	10	53	32	7	32	27	1.85
76777--76812	15	2.4	15	90	0	54	50	5	0	44	1.25
80800--80839	20	1.9	20	85	10	53	32	7	32	27	1.85
81050--81085	15	2.4	15	90	0	54	50	5	0	44	1.25
81211--81256	17	2.5	20	86	13	64	36	0	30	32	1.58
81523--81563	12	3.3	12	80	6	55	2	14	4	78	1.03
81775--81805	15	2.1	15	93	0	53	48	0	29	22	1.51
81940--81975	14	2.6	14	95	4	65	30	0	44	25	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81940--81978	13	2.9	13	88	7	60	35	0	41	23	1.55
85552--85591	18	2.2	19	86	8	57	0	15	7	77	0.98
86366--86415	19	2.5	20	87	3	66	44	6	12	38	1.66
89560--89601	14	3.0	14	82	10	50	2	14	2	80	0.90
89557--89601	23	2.0	23	86	0	63	2	15	2	80	0.92
89627--89666	18	2.2	19	86	8	57	2	15	5	77	1.04
89878--89908	15	2.1	15	93	0	53	48	0	29	22	1.51
90064--90099	14	2.6	14	91	4	56	30	0	41	27	1.56
90246--90488	121	2.0	121	95	1	434	38	15	16	30	1.89
90561--90602	19	2.2	19	95	0	75	45	7	11	35	1.69
93694--93728	10	3.3	10	88	11	52	0	14	0	85	0.59
93691--93728	15	2.5	15	91	4	58	0	15	0	84	0.63
94458--94500	20	2.2	20	91	4	70	44	4	13	37	1.65
98027--98062	14	2.6	14	91	4	56	27	0	44	27	1.55
98209--98453	122	2.0	122	95	0	445	38	13	15	31	1.87
107514--107568	23	2.4	23	75	0	56	3	21	1	72	1.09
107592--107651	11	5.1	11	75	20	59	0	16	5	78	0.92
107594--107651	6	9.7	6	75	14	57	0	15	5	79	0.90
107594--107651	18	3.2	18	95	4	100	0	15	5	79	0.90
107863--107893	15	2.1	15	93	0	53	48	0	29	22	1.51
108038--108073	14	2.6	14	91	4	56	33	0	41	25	1.55
108223--108464	122	2.0	122	95	0	439	40	13	15	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108537--108587	19	2.6	20	90	3	77	43	5	15	35	1.71
110361--110400	20	1.9	20	85	10	53	32	7	32	27	1.85
111734--111763	13	2.4	13	94	5	53	26	30	0	43	1.55
115909--115948	20	1.9	20	85	10	53	32	7	32	27	1.85
118910--118962	23	2.3	23	83	6	63	5	18	3	71	1.21
118989--119029	12	3.3	12	80	6	55	2	14	4	78	1.03
119374--119411	14	2.8	14	96	4	69	31	0	44	23	1.54
119762--119798	19	1.9	19	88	0	56	40	5	16	37	1.71
120089--120171	24	3.5	24	96	0	148	20	12	36	31	1.89
122916--122960	22	2.0	23	91	4	74	2	17	0	80	0.82
123229--123259	15	2.1	15	93	0	53	48	0	29	22	1.51
126193--126226	17	2.1	16	88	5	50	76	0	8	14	1.01
131871--131914	20	2.2	20	84	4	63	65	0	15	18	1.27

Tables:   1

The End!