genome.fa.s9.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000009.1 Hibiscus syriacus cultivar Beakdansim tig00000015_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78307

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4275--4334	25	2.3	26	80	11	70	40	0	3	56	1.16
5556--5690	70	1.9	70	90	1	218	41	8	17	32	1.79
7542--7589	24	2.1	24	85	11	66	52	2	18	27	1.57
9268--9346	42	1.9	41	81	2	95	32	17	22	26	1.96
11523--11624	21	4.8	21	86	4	125	22	39	17	20	1.93
14233--14263	2	15.5	2	100	0	62	48	0	0	51	1.00
20172--20244	31	2.4	31	83	0	92	35	16	10	36	1.84
23542--23584	20	2.3	19	84	11	61	25	27	9	37	1.87
23547--23584	20	1.9	20	94	0	67	26	26	10	36	1.89
23639--23716	37	2.1	37	97	0	147	42	21	6	29	1.78
23899--23954	26	2.2	26	83	6	69	57	23	12	7	1.60
27975--28311	45	7.5	45	89	0	494	22	22	11	42	1.86
28403--28524	45	2.7	45	94	1	208	36	18	12	33	1.88
28467--28604	56	2.4	57	93	1	233	36	18	8	36	1.82
31565--31610	2	23.0	2	100	0	92	50	0	0	50	1.00
33326--33468	45	3.2	45	85	4	209	21	20	13	44	1.85
34090--34122	12	2.8	12	90	4	50	66	0	6	27	1.15
35602--36027	106	4.0	106	91	1	660	22	19	23	35	1.96
36656--36762	37	2.9	37	77	6	101	40	11	20	28	1.87
37455--37489	18	1.9	18	94	0	61	45	28	8	17	1.77
38557--38613	5	11.4	5	75	20	57	0	15	5	78	0.91
38567--38618	16	2.9	18	78	16	72	0	13	7	78	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38560--38621	29	2.1	29	80	16	67	0	12	6	80	0.89
42065--42102	15	2.5	15	86	0	58	81	0	0	18	0.69
42695--42781	39	2.2	39	93	4	149	32	17	19	31	1.95
44098--44251	45	3.4	45	95	0	263	21	22	11	44	1.84
44337--44520	56	3.3	57	90	1	273	34	19	11	34	1.88
44316--44520	113	1.8	111	85	4	286	34	18	10	36	1.86
46583--46637	20	2.6	22	88	5	78	43	18	21	16	1.88
52255--52307	25	2.1	26	82	3	63	50	9	7	32	1.62
53694--53727	17	2.0	17	88	0	50	47	11	0	41	1.40
54235--54295	31	2.0	31	87	6	88	39	18	14	27	1.90
63350--63400	24	2.1	24	96	0	93	15	27	7	49	1.72
64477--64519	21	2.3	19	84	15	54	27	18	23	30	1.98
67267--67369	23	4.7	23	80	11	117	34	16	20	28	1.94
67249--67384	67	2.0	66	80	6	150	33	16	19	29	1.94
69687--69757	34	2.1	33	84	7	90	22	29	14	33	1.93
70089--70139	17	2.8	18	73	8	50	25	13	39	21	1.90
70421--70461	21	2.0	21	90	0	64	51	9	9	29	1.67
70442--70477	18	2.1	18	89	5	56	44	8	11	36	1.70
72127--72160	17	1.9	18	88	5	52	8	23	2	64	1.36
76348--76399	27	1.9	27	96	0	95	36	13	19	30	1.90

Tables:   1

The End!