Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000900.1 Hibiscus syriacus cultivar Beakdansim tig00001767_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82491
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:2003 original size:13 final size:13
Alignment explanation
Indices: 1985--2009 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1975 TTTCTTCAAC
1985 AAAAAGACAAAAA
1 AAAAAGACAAAAA
1998 AAAAAGACAAAA
1 AAAAAGACAAAA
2010 CAAAGACAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.08, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAAAGACAAAAA
Found at i:2257 original size:22 final size:22
Alignment explanation
Indices: 2227--2271 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
2217 GATGGAGATA
*
2227 GACGGATTTCGTCGAAAATGGG
1 GACGAATTTCGTCGAAAATGGG
* *
2249 GACGAATTTCGTCGGAGATGGG
1 GACGAATTTCGTCGAAAATGGG
2271 G
1 G
2272 TCGGATGTCG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.24, C:0.13, G:0.40, T:0.22
Consensus pattern (22 bp):
GACGAATTTCGTCGAAAATGGG
Found at i:2430 original size:20 final size:20
Alignment explanation
Indices: 2405--2445 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
2395 GCGTAAAAAC
2405 ATTTGACTTTCGCGTTGCGA
1 ATTTGACTTTCGCGTTGCGA
2425 ATTTGACTTTCGCGTTGCGA
1 ATTTGACTTTCGCGTTGCGA
2445 A
1 A
2446 ATTGGAAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.17, C:0.20, G:0.24, T:0.39
Consensus pattern (20 bp):
ATTTGACTTTCGCGTTGCGA
Found at i:2481 original size:20 final size:20
Alignment explanation
Indices: 2413--2485 Score: 78
Period size: 20 Copynumber: 3.6 Consensus size: 20
2403 ACATTTGACT
*
2413 TTCGCGTTGCG-AATTTGACT
1 TTCGCGTTGCGAAATTTGA-A
*
2433 TTCGCGTTGCGAAATTGGAA
1 TTCGCGTTGCGAAATTTGAA
* *
2453 -ACTGAGTTGCGAAATTTGAA
1 TTC-GCGTTGCGAAATTTGAA
2473 TTCGCGTTGCGAA
1 TTCGCGTTGCGAA
2486 TTTATTGGTC
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
19 1 0.02
20 35 0.81
21 7 0.16
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.33
Consensus pattern (20 bp):
TTCGCGTTGCGAAATTTGAA
Found at i:7283 original size:33 final size:33
Alignment explanation
Indices: 7241--7306 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
7231 TATTTATTTG
7241 AATGTTATTTAAATATTTTAAAATGAATTAAGT
1 AATGTTATTTAAATATTTTAAAATGAATTAAGT
7274 AATGTTATTTAAATATTTTAAAATGAATTAAGT
1 AATGTTATTTAAATATTTTAAAATGAATTAAGT
7307 GGTTGAAGGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.45, C:0.00, G:0.09, T:0.45
Consensus pattern (33 bp):
AATGTTATTTAAATATTTTAAAATGAATTAAGT
Found at i:12018 original size:15 final size:15
Alignment explanation
Indices: 11998--12030 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
11988 ACACGCTTCT
11998 AAATTAGATTATAAG
1 AAATTAGATTATAAG
12013 AAATTAGATTATAAG
1 AAATTAGATTATAAG
12028 AAA
1 AAA
12031 CATACAATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.58, C:0.00, G:0.12, T:0.30
Consensus pattern (15 bp):
AAATTAGATTATAAG
Found at i:12841 original size:2 final size:2
Alignment explanation
Indices: 12834--12860 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
12824 TAAAGGCAAG
12834 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
12861 ATTATTTGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:14434 original size:6 final size:6
Alignment explanation
Indices: 14423--14453 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
14413 AACACGCATT
*
14423 ACCACG ACCACG ACCACG ACCATG ACCACG A
1 ACCACG ACCACG ACCACG ACCACG ACCACG A
14454 GCCGAGCCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.35, C:0.45, G:0.16, T:0.03
Consensus pattern (6 bp):
ACCACG
Found at i:18055 original size:25 final size:25
Alignment explanation
Indices: 17984--18058 Score: 82
Period size: 25 Copynumber: 3.0 Consensus size: 25
17974 GACAAAACCG
*
17984 GTTGCAACCTAA-ATTCTCAA-TTCCG
1 GTTGCAACCTAATATT-T-AATTTCCA
* * *
18009 GTTGCAACCTAATATATGATTTCTA
1 GTTGCAACCTAATATTTAATTTCCA
18034 GTTGCAACCTAATATTTAATTTCCA
1 GTTGCAACCTAATATTTAATTTCCA
18059 ATATCAAACT
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
24 1 0.02
25 38 0.93
26 2 0.05
ACGTcount: A:0.31, C:0.21, G:0.11, T:0.37
Consensus pattern (25 bp):
GTTGCAACCTAATATTTAATTTCCA
Found at i:29146 original size:36 final size:36
Alignment explanation
Indices: 29101--29176 Score: 152
Period size: 36 Copynumber: 2.1 Consensus size: 36
29091 TTATAGCAAA
29101 AAAAATCGTCTTTATTCGAATTTTGCCAAAAATAGC
1 AAAAATCGTCTTTATTCGAATTTTGCCAAAAATAGC
29137 AAAAATCGTCTTTATTCGAATTTTGCCAAAAATAGC
1 AAAAATCGTCTTTATTCGAATTTTGCCAAAAATAGC
29173 AAAA
1 AAAA
29177 TCCCGAAAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.32
Consensus pattern (36 bp):
AAAAATCGTCTTTATTCGAATTTTGCCAAAAATAGC
Found at i:30791 original size:15 final size:15
Alignment explanation
Indices: 30773--30803 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
30763 TATGCAAAAC
30773 ATATCCTTCCAAAGG
1 ATATCCTTCCAAAGG
30788 ATATCCTTCCAAAGG
1 ATATCCTTCCAAAGG
30803 A
1 A
30804 AGGATCAGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.26, G:0.13, T:0.26
Consensus pattern (15 bp):
ATATCCTTCCAAAGG
Found at i:33651 original size:15 final size:15
Alignment explanation
Indices: 33633--33662 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
33623 CCACGGTGCT
*
33633 CCCGGAATCCTGCGC
1 CCCGAAATCCTGCGC
33648 CCCGAAATCCTGCGC
1 CCCGAAATCCTGCGC
33663 GATTGTGATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.47, G:0.23, T:0.13
Consensus pattern (15 bp):
CCCGAAATCCTGCGC
Found at i:35037 original size:19 final size:19
Alignment explanation
Indices: 35013--35049 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
35003 ACAAAACCGG
35013 TTGCAACCTAAATTCTCAA
1 TTGCAACCTAAATTCTCAA
*
35032 TTGCAACCTAATTTCTCA
1 TTGCAACCTAAATTCTCA
35050 TTTCCGGTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.35
Consensus pattern (19 bp):
TTGCAACCTAAATTCTCAA
Found at i:35066 original size:25 final size:25
Alignment explanation
Indices: 35032--35105 Score: 103
Period size: 25 Copynumber: 3.0 Consensus size: 25
35022 AAATTCTCAA
* *
35032 TTGCAACCTAATTTCTCATTTCCGG
1 TTGCAACCTAATATCTCATTTCCAG
*
35057 TTGCAACCTAATATCTTATTTCCAG
1 TTGCAACCTAATATCTCATTTCCAG
* *
35082 TTGCAACCTAATATTTTATTTCCA
1 TTGCAACCTAATATCTCATTTCCA
35106 ATATCAAACT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 45 1.00
ACGTcount: A:0.26, C:0.24, G:0.08, T:0.42
Consensus pattern (25 bp):
TTGCAACCTAATATCTCATTTCCAG
Found at i:40655 original size:20 final size:20
Alignment explanation
Indices: 40630--40667 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
40620 TTCGCAACAC
40630 GAAAATCGCAACGCGAAAAT
1 GAAAATCGCAACGCGAAAAT
*
40650 GAAAATTGCAACGCGAAA
1 GAAAATCGCAACGCGAAA
40668 TTTTCATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.50, C:0.18, G:0.21, T:0.11
Consensus pattern (20 bp):
GAAAATCGCAACGCGAAAAT
Found at i:42388 original size:21 final size:21
Alignment explanation
Indices: 42340--42389 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
42330 GTTAGAGGAG
* **
42340 TTACGTGATGAGGTTAGTGTT
1 TTACGTGATGAGGTCAGTACT
* *
42361 TTGCGTGATGAGGTCGGTACT
1 TTACGTGATGAGGTCAGTACT
42382 TTACGTGA
1 TTACGTGA
42390 CGACAATGGT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.18, C:0.10, G:0.34, T:0.38
Consensus pattern (21 bp):
TTACGTGATGAGGTCAGTACT
Found at i:42825 original size:21 final size:20
Alignment explanation
Indices: 42799--42915 Score: 96
Period size: 21 Copynumber: 5.6 Consensus size: 20
42789 TTCACCTGTC
42799 ATCGTTCAAGAGGCCTCTCCT
1 ATCGTTCAAGAGGCC-CTCCT
*
42820 ATCGTTCAAGAGGCCC-CTTT
1 ATCGTTCAAGAGGCCCTC-CT
*
42840 CATCGTTCAAGAGGCCCATCCC
1 -ATCGTTCAAGAGGCCC-TCCT
*
42862 A-CAGTTCAAAAGGCCC-CTCT
1 ATC-GTTCAAGAGGCCCTC-CT
*
42882 CATCGTTCAAGAGGTCCCTCCC
1 -ATCGTTCAAGAGG-CCCTCCT
*
42904 ACCGTTCAAGAG
1 ATCGTTCAAGAG
42916 CCCGATTCAC
Statistics
Matches: 78, Mismatches: 8, Indels: 20
0.74 0.08 0.19
Matches are distributed among these distances:
19 2 0.03
20 4 0.05
21 65 0.83
22 5 0.06
23 2 0.03
ACGTcount: A:0.23, C:0.35, G:0.19, T:0.23
Consensus pattern (20 bp):
ATCGTTCAAGAGGCCCTCCT
Found at i:42844 original size:42 final size:40
Alignment explanation
Indices: 42797--42915 Score: 157
Period size: 42 Copynumber: 2.8 Consensus size: 40
42787 GATTCACCTG
* *
42797 TCATCGTTCAAGAGGCCTCTCCTATCGTTCAAGAGGCCCCTT
1 TCATCGTTCAAGAGGCC-CTCCCA-CGTTCAAGAGGCCCCTC
*
42839 TCATCGTTCAAGAGGCCCATCCCACAGTTCAAAAGGCCCCTC
1 TCATCGTTCAAGAGGCCC-TCCCAC-GTTCAAGAGGCCCCTC
42881 TCATCGTTCAAGAGGTCCCTCCCACCGTTCAAGAG
1 TCATCGTTCAAGAGG-CCCTCCCA-CGTTCAAGAG
42916 CCCGATTCAC
Statistics
Matches: 69, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
41 2 0.03
42 63 0.91
43 4 0.06
ACGTcount: A:0.23, C:0.35, G:0.18, T:0.24
Consensus pattern (40 bp):
TCATCGTTCAAGAGGCCCTCCCACGTTCAAGAGGCCCCTC
Found at i:46501 original size:12 final size:12
Alignment explanation
Indices: 46480--46513 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
46470 GGTTGTGGGT
*
46480 TTTGAGATTGTG
1 TTTGATATTGTG
46492 TTTGATATTGTG
1 TTTGATATTGTG
*
46504 TTTGGTATTG
1 TTTGATATTG
46514 GAAATATGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.29, T:0.56
Consensus pattern (12 bp):
TTTGATATTGTG
Found at i:47131 original size:16 final size:16
Alignment explanation
Indices: 47110--47140 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
47100 AAATCATTGA
47110 AAAATTATATAAAAAT
1 AAAATTATATAAAAAT
*
47126 AAAATTATGTAAAAA
1 AAAATTATATAAAAA
47141 AATTAGAGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (16 bp):
AAAATTATATAAAAAT
Found at i:47367 original size:20 final size:19
Alignment explanation
Indices: 47282--47391 Score: 71
Period size: 20 Copynumber: 5.6 Consensus size: 19
47272 CAAAACATTT
* *
47282 GTGTTGCGAAAATAAAAGC
1 GTGTTGCGAAAACAAAATC
*
47301 -TGTTGC-AAAATTAAAATTC
1 GTGTTGCGAAAA-CAAAA-TC
**
47320 GTGTTGCGAATTCGAAAATC
1 GTGTTGCGAAAAC-AAAATC
*
47340 GAGTTGCGAAAACAAAATTC
1 GTGTTGCGAAAACAAAA-TC
** *
47360 GTGTTGCGATTTAGAAAATC
1 GTGTTGCGA-AAACAAAATC
*
47380 TTGTTGCGAAAA
1 GTGTTGCGAAAA
47392 GGAAACTTGT
Statistics
Matches: 70, Mismatches: 14, Indels: 14
0.71 0.14 0.14
Matches are distributed among these distances:
17 4 0.06
18 11 0.16
19 6 0.09
20 38 0.54
21 11 0.16
ACGTcount: A:0.37, C:0.12, G:0.22, T:0.29
Consensus pattern (19 bp):
GTGTTGCGAAAACAAAATC
Found at i:47405 original size:40 final size:40
Alignment explanation
Indices: 47313--47391 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 40
47303 TTGCAAAATT
*
47313 AAAATTCGTGTTGCGAATTCGAAAATCGAGTTGCGAAAAC
1 AAAATTCGTGTTGCGAATTAGAAAATCGAGTTGCGAAAAC
* **
47353 AAAATTCGTGTTGCGATTTAGAAAATCTTGTTGCGAAAA
1 AAAATTCGTGTTGCGAATTAGAAAATCGAGTTGCGAAAA
47392 GGAAACTTGT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.29
Consensus pattern (40 bp):
AAAATTCGTGTTGCGAATTAGAAAATCGAGTTGCGAAAAC
Found at i:47505 original size:21 final size:20
Alignment explanation
Indices: 47468--47509 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
47458 CTGTGTTGTG
*
47468 AATTTGGAAATCGCGTTGCA
1 AATTTGGAAATCACGTTGCA
47488 AATTTGGAAAATCACGTTGCA
1 AATTTGG-AAATCACGTTGCA
47509 A
1 A
47510 GAAAGAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (20 bp):
AATTTGGAAATCACGTTGCA
Found at i:47563 original size:101 final size:100
Alignment explanation
Indices: 47410--47594 Score: 223
Period size: 101 Copynumber: 1.8 Consensus size: 100
47400 GTGTTGTTAA
* * *
47410 AAAGAAATTCACGTTGCGAATTCAGAAATCGAGTTACGAATTGAAATTCTGTGTTGTGAATTTGG
1 AAAGAAATTCACGTTGCGAATTCAGAAATCAAGTTACGAATTGAAA-TCTGTGTTGCGAAATTGG
47475 AAATCGCGTTGCAAATTTGGAAAATCACGTTGCAAG
65 AAATCGCGTTGCAAATTTGGAAAATCACGTTGCAAG
**
47511 AAAGAAATTTGCGTTGCG-ATTACAGAAA-CTAAGTTACGAATTTGGAAA-CTGTGTTGCGAAAT
1 AAAGAAATTCACGTTGCGAATT-CAGAAATC-AAGTTACGAA-TT-GAAATCTGTGTTGCGAAAT
** * *
47573 TGGAGTTCGTGTTGCGAATTTG
62 TGGAAATCGCGTTGCAAATTTG
47595 TTGGTCATTT
Statistics
Matches: 71, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
100 4 0.06
101 61 0.86
102 2 0.03
103 4 0.06
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31
Consensus pattern (100 bp):
AAAGAAATTCACGTTGCGAATTCAGAAATCAAGTTACGAATTGAAATCTGTGTTGCGAAATTGGA
AATCGCGTTGCAAATTTGGAAAATCACGTTGCAAG
Found at i:47570 original size:20 final size:20
Alignment explanation
Indices: 47547--47594 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
47537 AACTAAGTTA
47547 CGAATTTGGAAACT-GTGTTG
1 CGAATTTGG-AACTCGTGTTG
* **
47567 CGAAATTGGAGTTCGTGTTG
1 CGAATTTGGAACTCGTGTTG
47587 CGAATTTG
1 CGAATTTG
47595 TTGGTCATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 2 0.09
20 21 0.91
ACGTcount: A:0.23, C:0.10, G:0.31, T:0.35
Consensus pattern (20 bp):
CGAATTTGGAACTCGTGTTG
Found at i:56267 original size:399 final size:397
Alignment explanation
Indices: 55530--56728 Score: 2081
Period size: 399 Copynumber: 3.0 Consensus size: 397
55520 ATAAAAAATC
*
55530 TATATTAAATCAAAAGAATTATTATGATTTAAGTTTTGATATATTTTAATTTTCATTCTATTTAA
1 TATATTAAATCAAAAGAATTATTATGATTTAAGTTTTGATATATTTTAATTATCATTCTATTTAA
*
55595 TTGAAACATTTCGTTAGATGTCAATGCCTAATGGCATGCCTTTTGTCA-TTTTTTTTGGCAATTT
66 TTGAAAGATTTCGTTAGATGTCAATGCCTAATGGCATGCCTTTTGTCACTTTTTTTTGGCAATTT
* *
55659 ATACGTGGATCACTTCCATAAAAAGAATGGATGATTTGTATGTTAAATCATTAATTTAATTTTAA
131 ATACGTGGATCGCTTCCATAAAAAGAATGGATGATTTGTATTTTAAATCATTAATTTAATTTTAA
*
55724 TTTTAATAATAAATCTGAATTTAATTCAATAACGTCATTTAATTTTTATTATTGATAAACTAAAT
196 TTTTAATAATAAATCTGAATTTAATTAAATAACGTCATTTAATTTTTATTATTGATAAACTAAAT
55789 CATTCATATTAATATAAGGGCAAATTATATATTTAGTACCTAAACTATCAGTTTTGATCTGTTTT
261 CATTCATATTAATATAAGGGCAAATTATATATTTAGTACCTAAACTATCAGTTTTGATCTGTTTT
*
55854 AGTACCTAAACTTTTAATTTTTTTAAAATCATACCTAAAATTTACTTTTTGTTTCACTTTAATAT
326 AGTACCTAAACTTTTAATTTTTTTAAAACCATACCTAAAATTTACTTTTTGTTTCA-TTTAATAT
55919 ATATATATA
390 ATA-ATATA
**
55928 TATATTAAATCAAAAGAATTATTATGATTTAAGTTTTGATATATTTTAATTGCCATTCTATTTAA
1 TATATTAAATCAAAAGAATTATTATGATTTAAGTTTTGATATATTTTAATTATCATTCTATTTAA
*
55993 TTGAAAGATTTCGTTAGATGTCAATGCCTAATGGCATGCCTTTTATCACTTTTTTTTGGCAATTT
66 TTGAAAGATTTCGTTAGATGTCAATGCCTAATGGCATGCCTTTTGTCACTTTTTTTTGGCAATTT
56058 ATACGTGGATCGCTTCCATAAAAAGAATGGATGATTTGTATTTTAAATCATTAATTTAATTTTAA
131 ATACGTGGATCGCTTCCATAAAAAGAATGGATGATTTGTATTTTAAATCATTAATTTAATTTTAA
56123 TTTTAATAATAAATCTGAATTTAATTAAATAACGTCATTTAATTTTTATTATTGATAAACTAAAT
196 TTTTAATAATAAATCTGAATTTAATTAAATAACGTCATTTAATTTTTATTATTGATAAACTAAAT
* *
56188 CATTCATATTAATATAAGGGCAAATTATATATTTAGTACCTAATCTATCAGTTTTGATATGTTTT
261 CATTCATATTAATATAAGGGCAAATTATATATTTAGTACCTAAACTATCAGTTTTGATCTGTTTT
* * *
56253 AGTACCTAAACTTTTAATTTTTTTAAAACCATATCTAAAGTTTACTTTTTATTTCA--T--T-T-
326 AGTACCTAAACTTTTAATTTTTTTAAAACCATACCTAAAATTTACTTTTTGTTTCATTTAATATA
56312 TAATATA
391 TAATATA
56319 TATATTAAATCAAAAGAATTATTATGATTTAAGTTTTGATATATTTTAATTATCATTCTATTTAA
1 TATATTAAATCAAAAGAATTATTATGATTTAAGTTTTGATATATTTTAATTATCATTCTATTTAA
56384 TTGAAAGATTTCGTTAGATGTCAATGCCTAATGGCATGCCTTTTGTCAC-TTTTTTTGGCAATTT
66 TTGAAAGATTTCGTTAGATGTCAATGCCTAATGGCATGCCTTTTGTCACTTTTTTTTGGCAATTT
56448 ATACGTGGATCGCTTCCATAAAAAGAATGGATGATTTGTATTTTAAATCATTAATTTAATTTTAA
131 ATACGTGGATCGCTTCCATAAAAAGAATGGATGATTTGTATTTTAAATCATTAATTTAATTTTAA
*
56513 TTTTAATTTTAATAATATATATGAATTTAATTAAATAACGTCATTTAATTTTTATTATTGATAAA
196 TTTTAA---TAAT-A-A-ATCTGAATTTAATTAAATAACGTCATTTAATTTTTATTATTGATAAA
56578 CTAAATCATTCATATTAATATAAGGGCAAATTATATATTTAGTACCTAAACTATCAGTTTTGATC
255 CTAAATCATTCATATTAATATAAGGGCAAATTATATATTTAGTACCTAAACTATCAGTTTTGATC
* *
56643 TGTTTTAGTACCTAAAATTTTAATTTTTTTTAAAACCATACCTAAACTTTACTTTTTGTTTCATT
320 TGTTTTAGTACCTAAACTTTTAA-TTTTTTTAAAACCATACCTAAAATTTACTTTTTGTTTCA-T
*
56708 TTAATATATACATGTA
383 TTAATATATA-ATATA
56724 TATAT
1 TATAT
56729 ATATATATAT
Statistics
Matches: 761, Mismatches: 24, Indels: 25
0.94 0.03 0.03
Matches are distributed among these distances:
390 86 0.11
391 116 0.15
392 2 0.00
393 5 0.01
394 2 0.00
395 1 0.00
396 132 0.17
397 36 0.05
398 109 0.14
399 258 0.34
400 1 0.00
402 1 0.00
403 1 0.00
404 2 0.00
405 9 0.01
ACGTcount: A:0.35, C:0.10, G:0.09, T:0.46
Consensus pattern (397 bp):
TATATTAAATCAAAAGAATTATTATGATTTAAGTTTTGATATATTTTAATTATCATTCTATTTAA
TTGAAAGATTTCGTTAGATGTCAATGCCTAATGGCATGCCTTTTGTCACTTTTTTTTGGCAATTT
ATACGTGGATCGCTTCCATAAAAAGAATGGATGATTTGTATTTTAAATCATTAATTTAATTTTAA
TTTTAATAATAAATCTGAATTTAATTAAATAACGTCATTTAATTTTTATTATTGATAAACTAAAT
CATTCATATTAATATAAGGGCAAATTATATATTTAGTACCTAAACTATCAGTTTTGATCTGTTTT
AGTACCTAAACTTTTAATTTTTTTAAAACCATACCTAAAATTTACTTTTTGTTTCATTTAATATA
TAATATA
Found at i:57135 original size:11 final size:10
Alignment explanation
Indices: 57099--57214 Score: 78
Period size: 10 Copynumber: 11.1 Consensus size: 10
57089 TGTTAATATG
57099 ATAATAAAAA
1 ATAATAAAAA
57109 ATGAA-AAAATA
1 AT-AATAAAA-A
57120 GATAATAAAAA
1 -ATAATAAAAA
57131 GATAATAAAAA
1 -ATAATAAAAA
* *
57142 TTAAAAAAAA
1 ATAATAAAAA
57152 ATAA-AAAAA
1 ATAATAAAAA
* *
57161 ATACTACAAA
1 ATAATAAAAA
*
57171 A-AAT-AATA
1 ATAATAAAAA
57179 ATAATAAACGAA
1 ATAATAAA--AA
57191 ATAAAGTAAAAA
1 AT-AA-TAAAAA
57203 ATAATAACAAA
1 ATAATAA-AAA
57214 A
1 A
57215 GATTAAGTTT
Statistics
Matches: 85, Mismatches: 9, Indels: 23
0.73 0.08 0.20
Matches are distributed among these distances:
8 3 0.04
9 13 0.15
10 27 0.32
11 23 0.27
12 13 0.15
13 2 0.02
14 4 0.05
ACGTcount: A:0.74, C:0.03, G:0.04, T:0.18
Consensus pattern (10 bp):
ATAATAAAAA
Found at i:58596 original size:14 final size:12
Alignment explanation
Indices: 58550--58589 Score: 55
Period size: 11 Copynumber: 3.3 Consensus size: 12
58540 AAACAAAAAT
*
58550 TAAAAATTAAAAA
1 TAAAAA-TAACAA
58563 TAAAAATAACAA
1 TAAAAATAACAA
58575 T-AAAATAACAA
1 TAAAAATAACAA
58586 TAAA
1 TAAA
58590 TAAATAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
11 11 0.44
12 8 0.32
13 6 0.24
ACGTcount: A:0.75, C:0.05, G:0.00, T:0.20
Consensus pattern (12 bp):
TAAAAATAACAA
Found at i:58621 original size:6 final size:6
Alignment explanation
Indices: 58539--58589 Score: 50
Period size: 6 Copynumber: 8.3 Consensus size: 6
58529 CCTTGATAAT
* * *
58539 AAAACA AAAATTA AAAATTA AAAATA AAAATA ACAAT- AAAATA ACAATA
1 AAAATA AAAA-TA AAAA-TA AAAATA AAAATA AAAATA AAAATA AAAATA
58588 AA
1 AA
58590 TAAATAATAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
5 4 0.11
6 22 0.58
7 12 0.32
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (6 bp):
AAAATA
Found at i:58676 original size:37 final size:36
Alignment explanation
Indices: 58599--58711 Score: 115
Period size: 35 Copynumber: 3.1 Consensus size: 36
58589 ATAAATAATA
*
58599 ATATTAT-TATTAT-AATAAAAATATTTTCCAAAAACCTAT
1 ATATTATATATT-TCAA-AAAAATATTTT-C-AAAA-TTAT
*
58638 ATAATATATATTTCAAAAAAATATTTT-AAAATTAT
1 ATATTATATATTTCAAAAAAATATTTTCAAAATTAT
***
58673 ATATTATATATTTTTTAAAAATATTTTCAAAATTAT
1 ATATTATATATTTCAAAAAAATATTTTCAAAATTAT
58709 ATA
1 ATA
58712 GTTTTCAAAA
Statistics
Matches: 65, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
35 26 0.40
36 15 0.23
39 18 0.28
40 6 0.09
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (36 bp):
ATATTATATATTTCAAAAAAATATTTTCAAAATTAT
Found at i:58744 original size:25 final size:25
Alignment explanation
Indices: 58712--58761 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
58702 AAATTATATA
*
58712 GTTTTCAAAAATG-TTTTAAAACTAT
1 GTTTTC-AAAATGATTTCAAAACTAT
58737 GTTTTCAAAATGATTTCAAAACTAT
1 GTTTTCAAAATGATTTCAAAACTAT
58762 ATATTATATG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.42
Consensus pattern (25 bp):
GTTTTCAAAATGATTTCAAAACTAT
Found at i:58860 original size:69 final size:69
Alignment explanation
Indices: 58785--58990 Score: 168
Period size: 74 Copynumber: 2.9 Consensus size: 69
58775 TTTCAAAATG
* * *
58785 TTTTTCAAAATCCATATA-ATATATACATTTTTAAAATGTTTTTCAAAA-AATATATAATATATT
1 TTTTTCAAAAACCATATATATATATAC-TTTTCAAAATATTTTT-AAAACAATATATAATATATT
58848 CAAACA
64 CAAACA
* *
58854 TTTTTCAAAAACTATATATTATATATACTTTTCAAAATATTTTTAAAACCATATATTATATAAGT
1 TTTTTCAAAAACCATATA-TATATATACTTTTCAAAATATTTTTAAAACAATATA-TA-AT-A-T
* *
58919 TTTCTAAAAA
61 ATTC-AAACA
* * * * * * *
58929 TATTTTTAAAAGCCATATAT-TATATAATTTCCAAAA-ATGATTTCAAACTATATATAATATAT
1 T-TTTTCAAAAACCATATATATATATACTTTTCAAAATAT-TTTTAAAACAATATATAATATAT
58991 ACTAAAAAAT
Statistics
Matches: 111, Mismatches: 16, Indels: 19
0.76 0.11 0.13
Matches are distributed among these distances:
69 20 0.18
70 21 0.19
71 11 0.10
72 4 0.04
73 5 0.05
74 30 0.27
75 6 0.05
76 14 0.13
ACGTcount: A:0.45, C:0.10, G:0.02, T:0.43
Consensus pattern (69 bp):
TTTTTCAAAAACCATATATATATATACTTTTCAAAATATTTTTAAAACAATATATAATATATTCA
AACA
Found at i:58910 original size:37 final size:36
Alignment explanation
Indices: 58738--58991 Score: 186
Period size: 38 Copynumber: 7.0 Consensus size: 36
58728 TAAAACTATG
* * *
58738 TTTTCAAAATGA-TTTCAAAACTATATATTATATGTA
1 TTTTCAAAAT-ATTTTTAAAACCATATATTATATATA
* * *
58774 TTTTCAAAATGTTTTTCAAAATCCATATAATATATACA
1 TTTTCAAAATATTTTT-AAAA-CCATATATTATATATA
* *
58812 TTTTTAAAATGTTTTTCAAAA--A-ATA-TATA-ATA
1 TTTTCAAAATATTTTT-AAAACCATATATTATATATA
* * *
58844 TATTCAAACAT-TTTTCAAAAACTATATATTATATATA
1 TTTTCAAA-ATATTTT-TAAAACCATATATTATATATA
58881 CTTTTCAAAATATTTTTAAAACCATATATTATATA-A
1 -TTTTCAAAATATTTTTAAAACCATATATTATATATA
58917 GTTTTCTAAAAATATTTTTAAAAGCCATATATTATATA-A
1 -TTTTC--AAAATATTTTTAAAA-CCATATATTATATATA
* * * * *
58956 TTTCCAAAA-ATGATTTCAAACTATATATAATATATA
1 TTTTCAAAATAT-TTTTAAAACCATATATTATATATA
58992 CTAAAAAATC
Statistics
Matches: 181, Mismatches: 20, Indels: 34
0.77 0.09 0.14
Matches are distributed among these distances:
32 16 0.09
33 6 0.03
34 4 0.02
35 18 0.10
36 34 0.19
37 26 0.14
38 62 0.34
39 15 0.08
ACGTcount: A:0.44, C:0.09, G:0.03, T:0.43
Consensus pattern (36 bp):
TTTTCAAAATATTTTTAAAACCATATATTATATATA
Found at i:58953 original size:107 final size:106
Alignment explanation
Indices: 58750--58953 Score: 263
Period size: 107 Copynumber: 1.9 Consensus size: 106
58740 TTCAAAATGA
* *
58750 TTTCAAAACTATATATTATATGTATTTTCAAAATGTTTTTCAAAATCCATATAATATATACATTT
1 TTTCAAAACTATATATTATATATATTTTCAAAATATTTTTCAAAATCCATATAATATATACATTT
* *
58815 TTAAAATGTTTTTCAAAAAATATATAATATATTCAAACATT
66 TTAAAATATTTTTCAAAAAACATATAATATATTCAAACATT
*
58856 TTTCAAAAACTATATATTATATATACTTTTCAAAATATTTTT-AAAA-CCATATATTATATA-AG
1 TTTC-AAAACTATATATTATATATA-TTTTCAAAATATTTTTCAAAATCCATATAATATATACA-
** *
58918 TTTTCTAAAAATATTTTT-AAAAGCCATATATTATAT
63 TTTT-T-AAAATATTTTTCAAAAAACATATAATATAT
58954 AATTTCCAAA
Statistics
Matches: 85, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
105 1 0.01
106 21 0.25
107 38 0.45
108 25 0.29
ACGTcount: A:0.44, C:0.09, G:0.02, T:0.45
Consensus pattern (106 bp):
TTTCAAAACTATATATTATATATATTTTCAAAATATTTTTCAAAATCCATATAATATATACATTT
TTAAAATATTTTTCAAAAAACATATAATATATTCAAACATT
Found at i:59702 original size:84 final size:84
Alignment explanation
Indices: 59614--60866 Score: 1093
Period size: 84 Copynumber: 14.9 Consensus size: 84
59604 GTTTACCTCT
* * * * * *
59614 GAGCTGAGTGTAATCGAACTCGAAGGTCTTCGGTTGGCAGATAGTCCTTCTCGGCTTAAGCTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAGCCCTTCTCGACTTAAGTTATG
* *
59679 CTACAAATGATGTGCCTAG
66 CTGCAAATGATGTGCCTTG
* * *
59698 GAGCTGAGCGTAGTCGAACTCGTCGAACTTGAAGGTATTTGG-TGACAGATAACCCTTCTCGACT
1 GAGCTGAGCGTAGTCGAA--C-T----C--GAAGGTCTTTGGTTGGCAGATAGCCCTTCTCGACT
* * * *
59762 TAAGTTATGTTGTAAATAATGTGCCCTAG
57 TAAGTTATGCTGCAAATGATGTG-CCTTG
* ** * * * *
59791 AAGCTGAATGTAATTGAACTCGAAGGTATTT-GTTGGCAGATAACCCTTCTCGACTTAAGTTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAGCCCTTCTCGACTTAAGTTATG
* *
59855 GTGCAAATGATATGCCTTG
66 CTGCAAATGATGTGCCTTG
* * * * * *
59874 GAGCTGAGCGTAGTCAAACTCGAAGGTCTTTTGG-TGTCAGATAACCCTTCTAGCCTTGAGTTAT
1 GAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGTTGGCAGATAGCCCTTCTCGACTTAAGTTAT
* * * *
59938 GTTGTAAATGATATGCCCTCG
65 GCTGCAAATGATGTG-CCTTG
* ** * * * *
59959 AAGCTGATTGTAATCGAGCTTG-AGGATC--T--TTGGCAGATAGCCCTTCTCGACTTAAGCTAT
1 GAGCTGAGCGTAGTCGAACTCGAAGG-TCTTTGGTTGGCAGATAGCCCTTCTCGACTTAAGTTAT
* *
60019 GCTGTAAATGATGTGCATTG
65 GCTGCAAATGATGTGCCTTG
* * *
60039 GAGCTGAGTGTAGTCGAACTCGAAGGTCTTTGGTTGGAAGATAACCCTTCTCGACTTAAGTTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAGCCCTTCTCGACTTAAGTTATG
* * *
60104 CTGAAAATGATATACCTTG
66 CTGCAAATGATGTGCCTTG
*
60123 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTT-GCAGATAGCCCTTCTCGACTTAAGCTAT
1 GAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGTTGGCAGATAGCCCTTCTCGACTTAAGTTAT
** * * *
60187 GCTATAAAGGATTTGCCCTCG
65 GCTGCAAATGATGTG-CCTTG
* * * * * **
60208 AAGCTGAGCGTAGTCGAACTCGAAGGTCTTT-GTTGACAGATAACCCTTCTAGCCTTGGGTTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAGCCCTTCTCGACTTAAGTTATG
*
60272 CTGTAAATGATGTGCCTTCG
66 CTGCAAATGATGTGCCTT-G
* * * * * * * *
60292 AAGTTAAGTGTAATCAAACTC-AGGGGATCTTTGGTTGGCAGATAGCCCTTCTCGACTTAAGCTA
1 GAGCTGAGCGTAGTCGAACTCGA-AGG-TCTTTGGTTGGCAGATAGCCCTTCTCGACTTAAGTTA
* *
60356 TGCTGCAAATGTTGTGTCGTT-
64 TGCTGCAAATGATGTG-CCTTG
* * * * * * * * *
60377 GAGCTGAGCGTAGTCAAACTCAAAGGTCTTTTGTTGGTAGATAACCATTCTAGCCTTGAGTTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAGCCCTTCTCGACTTAAGTTATG
* *
60442 CTGCAAATGTTATGCCTTG
66 CTGCAAATGATGTGCCTTG
* ** *
60461 GAGCTGAGCGTAGTCAAACTCGGGGGTCTTTGGTTGGCATATAGCCCTTCTCGACTTAAGTTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAGCCCTTCTCGACTTAAGTTATG
*
60526 CTGCAAATGATGTGTCGTT-
66 CTGCAAATGATGTG-CCTTG
* * * * * * * * * * *
60545 AAGCTGAGCGTAGTCAAACTCAAATGTATTTTGTTGGCAGATAACCTTTCTAGCCTTGAGTTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAGCCCTTCTCGACTTAAGTTATG
* * *
60610 CTGCAAATGTTATGCTTTG
66 CTGCAAATGATGTGCCTTG
* *
60629 GAGCTGAGCGTAGTCGAACTCGAAGGTC--T--TTGGCAAATAGCCCTTCTCAACTTAAGTTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAGCCCTTCTCGACTTAAGTTATG
*
60690 CTGCAAATGATAGTGCCTTT
66 CTGCAAATGAT-GTGCCTTG
* * * *
60710 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGATGGCAGATATCCCTTCTCGACTTAAGCTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAGCCCTTCTCGACTTAAGTTATG
* * **
60775 CTGCAAATAATATGCCCTCA
66 CTGCAAATGATGTG-CCTTG
* * * * * * *
60795 AAGCTGAGCGTAGTCGAACTCGAAGGTCTTT-GTTGACATATAACCCTTCTAGCCTTGAGTTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAGCCCTTCTCGACTTAAGTTATG
60859 CTGCAAAT
66 CTGCAAAT
60867 AGATTCTTTA
Statistics
Matches: 945, Mismatches: 185, Indels: 78
0.78 0.15 0.06
Matches are distributed among these distances:
80 57 0.06
81 73 0.08
82 3 0.00
83 40 0.04
84 504 0.53
85 156 0.17
86 41 0.04
87 4 0.00
90 1 0.00
91 2 0.00
92 36 0.04
93 28 0.03
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (84 bp):
GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAGCCCTTCTCGACTTAAGTTATG
CTGCAAATGATGTGCCTTG
Found at i:60100 original size:249 final size:250
Alignment explanation
Indices: 59719--60866 Score: 1131
Period size: 249 Copynumber: 4.6 Consensus size: 250
59709 AGTCGAACTC
* * * * *
59719 GTCGAACTTGAAGGTATTTGGTGACAGATAACCCTTCTCGACTTAAGTTATGTTGTAAATAATGT
1 GTCGAACTCGAAGGTCTTT--TGGCAGATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATGT
* * * * *
59784 GCCCTAGAAGCTGAATGTAATTGAACTCGAAGGTATTTGTTGGCAGATAACCCTTCTCGACTTAA
64 GCCCTTGAAGCTGAGTGTAGTCGAACTCGAAGGTCTTTGTTGGCAGATAACCCTTCTCGACTTAA
*
59849 GTTATGGTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCAAACTCGAAGGTCTTTTGGTGTCAG
129 GTTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCAAACTCGAAGGTCTTTTGGTGTCAG
* * * * **
59914 ATAACCCTTCTAGCCTTGAGTTATGTTGTAAATGATATGCCCTCGAAGCTGATTGTA
194 ATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATATGCCCTCGAAGCTGAGCGTA
* * * * *
59971 ATCGAGCTTG-AGGATC-TTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGTAAATGATGTG
1 GTCGAACTCGAAGG-TCTTTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATGTG
* * *
60034 -CATTGGAGCTGAGTGTAGTCGAACTCGAAGGTCTTTGGTTGGAAGATAACCCTTCTCGACTTAA
65 CCCTTGAAGCTGAGTGTAGTCGAACTCGAAGGTCTTT-GTTGGCAGATAACCCTTCTCGACTTAA
* * *
60098 GTTATGCTGAAAATGATATACCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGT-TGCA
129 GTTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCAAACTCGAAGGTCTTTTGGTGT-CA
* * * ** * *
60162 GATAGCCCTTCTCGACTTAAGCTATGCTATAAAGGATTTGCCCTCGAAGCTGAGCGTA
193 GATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATATGCCCTCGAAGCTGAGCGTA
* * * **
60220 GTCGAACTCGAAGGTCTTTGTTGACAGATAACCCTTCTAGCCTTGGGTTATGCTGTAAATGATGT
1 GTCGAACTCGAAGGTC-TT-TTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATGT
* * * * * *
60285 G-CCTTCGAAGTTAAGTGTAATCAAACTC-AGGGGATCTTTGGTTGGCAGATAGCCCTTCTCGAC
64 GCCCTT-GAAGCTGAGTGTAGTCGAACTCGA-AGG-TCTTT-GTTGGCAGATAACCCTTCTCGAC
* * * * * *
60348 TTAAGCTATGCTGCAAATGTTGTGTCGTT-GAGCTGAGCGTAGTCAAACTCAAAGGTCTTTTGTT
125 TTAAGTTATGCTGCAAATGATATG-CCTTGGAGCTGAGCGTAGTCAAACTCGAAGGTCTTTTGGT
* * * * * *
60412 GGT-AGATAACCATTCTAGCCTTGAGTTATGCTGCAAATGTTATG-CCTTGGAGCTGAGCGTA
189 -GTCAGATAACCCTTCTAGACTTAAGTTATGCTGCAAATGATATGCCCTCGAAGCTGAGCGTA
* ** * * *
60473 GTCAAACTCGGGGGTCTTTGGTTGGCATATAGCCCTTCTCGACTTAAGTTATGCTGCAAATGATG
1 GTCGAACTCGAAGGTC-TT--TTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATG
* * * * * * * * * *
60538 TGTCGTT-AAGCTGAGCGTAGTCAAACTCAAATGTATTTTGTTGGCAGATAACCTTTCTAGCCTT
63 TGCCCTTGAAGCTGAGTGTAGTCGAACTCGAAGGT-CTTTGTTGGCAGATAACCCTTCTCGACTT
* * * *
60602 GAGTTATGCTGCAAATGTTATGCTTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTT-G-G-C
127 AAGTTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCAAACTCGAAGGTCTTTTGGTGTC
* * * *
60663 AAATAGCCCTTCTCA-ACTTAAGTTATGCTGCAAATGATAGTGCCTTTG-AGCTGAGCGTA
192 AGATAACCCTTCT-AGACTTAAGTTATGCTGCAAATGATA-TGCCCTCGAAGCTGAGCGTA
* * * * *
60722 GTCGAACTCGAAGGTCTTTTGATGGCAGATATCCCTTCTCGACTTAAGCTATGCTGCAAATAATA
1 GTCGAACTCGAAGGTC-TTT--TGGCAGATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATG
** * * * * * *
60787 TGCCCTCAAAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGTTGACATATAACCCTTCTAGCCTTG
63 TGCCCTTGAAGCTGAGTGTAGTCGAACTCGAAGGTCTTTGTTGGCAGATAACCCTTCTCGACTTA
60852 AGTTATGCTGCAAAT
128 AGTTATGCTGCAAAT
60867 AGATTCTTTA
Statistics
Matches: 744, Mismatches: 127, Indels: 53
0.81 0.14 0.06
Matches are distributed among these distances:
247 1 0.00
248 62 0.08
249 293 0.39
250 31 0.04
251 12 0.02
252 119 0.16
253 71 0.10
254 148 0.20
255 6 0.01
256 1 0.00
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (250 bp):
GTCGAACTCGAAGGTCTTTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGTAAATGATGTGC
CCTTGAAGCTGAGTGTAGTCGAACTCGAAGGTCTTTGTTGGCAGATAACCCTTCTCGACTTAAGT
TATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCAAACTCGAAGGTCTTTTGGTGTCAGAT
AACCCTTCTAGACTTAAGTTATGCTGCAAATGATATGCCCTCGAAGCTGAGCGTA
Found at i:62132 original size:83 final size:87
Alignment explanation
Indices: 62016--62227 Score: 236
Period size: 95 Copynumber: 2.4 Consensus size: 87
62006 TAAAGTAGAT
* * *
62016 GCGTTTAACCAATTGCTCTAGAGGGACAGCTCAA-TAT-GTA-AA-CACCTTTATCAGGTTAGCT
1 GCGTTTAACCAATTGCTCTAGAGGGACAACTCAATTATAGTATAATCACATTTATCAGGCTAGCT
* *
62077 GAATCTTATCCATAAAGCCGGG
66 GAATATTATCCATAAAGACGGG
*
62099 GCGTTTAACCAATTGC-CTTAGAGGGACATCTCAAGCTTTATTGTATAGTATAATCACATTTATC
1 GCGTTTAACCAATTGCTC-TAGAGGGACAACTC-A-----A-T-TATAGTATAATCACATTTATC
62163 AGGCTAGCTGAATATTATCCATAAAGACGGG
57 AGGCTAGCTGAATATTATCCATAAAGACGGG
* *
62194 GCATTTAACCAATTTCTCTAGAGGGACAACTCAA
1 GCGTTTAACCAATTGCTCTAGAGGGACAACTCAA
62228 GCTTTATTGT
Statistics
Matches: 107, Mismatches: 8, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
82 1 0.01
83 29 0.27
84 1 0.01
89 2 0.02
92 3 0.03
93 3 0.03
94 3 0.03
95 64 0.60
96 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (87 bp):
GCGTTTAACCAATTGCTCTAGAGGGACAACTCAATTATAGTATAATCACATTTATCAGGCTAGCT
GAATATTATCCATAAAGACGGG
Found at i:62227 original size:95 final size:95
Alignment explanation
Indices: 62062--62240 Score: 288
Period size: 95 Copynumber: 1.9 Consensus size: 95
62052 TGTAAACACC
* * * *
62062 TTTATCAGGTTAGCTGAATCTTATCCATAAAGCCGGGGCGTTTAACCAATTGCCTTAGAGGGACA
1 TTTATCAGGCTAGCTGAATATTATCCATAAAGACGGGGCATTTAACCAATTGCCTTAGAGGGACA
*
62127 TCTCAAGCTTTATTGTATAGTATAATCACA
66 ACTCAAGCTTTATTGTATAGTATAATCACA
*
62157 TTTATCAGGCTAGCTGAATATTATCCATAAAGACGGGGCATTTAACCAATT-TCTCTAGAGGGAC
1 TTTATCAGGCTAGCTGAATATTATCCATAAAGACGGGGCATTTAACCAATTGCCT-TAGAGGGAC
62221 AACTCAAGCTTTATTGTATA
65 AACTCAAGCTTTATTGTATA
62241 TTTATAATTA
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
94 2 0.03
95 75 0.97
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.32
Consensus pattern (95 bp):
TTTATCAGGCTAGCTGAATATTATCCATAAAGACGGGGCATTTAACCAATTGCCTTAGAGGGACA
ACTCAAGCTTTATTGTATAGTATAATCACA
Found at i:64202 original size:14 final size:14
Alignment explanation
Indices: 64183--64213 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
64173 CCCATACGGA
64183 GAATAAATTCCCAC
1 GAATAAATTCCCAC
*
64197 GAATAAATTTCCAC
1 GAATAAATTCCCAC
64211 GAA
1 GAA
64214 GGCGTCGCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.45, C:0.23, G:0.10, T:0.23
Consensus pattern (14 bp):
GAATAAATTCCCAC
Found at i:64849 original size:23 final size:23
Alignment explanation
Indices: 64806--64850 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
64796 ATGTTAATAT
* *
64806 GATAATAAAAAATAGATAAAAAA
1 GATAATAAAAAATAAAAAAAAAA
*
64829 GATAAT-AAAAATGAAAAAAAAA
1 GATAATAAAAAATAAAAAAAAAA
64851 TATTTTAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.16
Consensus pattern (23 bp):
GATAATAAAAAATAAAAAAAAAA
Found at i:64962 original size:8 final size:7
Alignment explanation
Indices: 64946--64982 Score: 65
Period size: 7 Copynumber: 5.3 Consensus size: 7
64936 ATTTAAATGT
64946 AAAATAA
1 AAAATAA
*
64953 AAATTAA
1 AAAATAA
64960 AAAATAA
1 AAAATAA
64967 AAAATAA
1 AAAATAA
64974 AAAATAA
1 AAAATAA
64981 AA
1 AA
64983 CTTAGGATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (7 bp):
AAAATAA
Found at i:66275 original size:15 final size:15
Alignment explanation
Indices: 66255--66317 Score: 69
Period size: 15 Copynumber: 4.3 Consensus size: 15
66245 TTAGACCTGG
*
66255 ATAATAAAACAAAAA
1 ATAATAAAATAAAAA
*
66270 ATAATAAAA-ATAAA
1 ATAATAAAATAAAAA
66284 AT--TAATAATAAAAA
1 ATAATAA-AATAAAAA
66298 ATAATAAAATAAATAA
1 ATAATAAAATAAA-AA
66314 ATAA
1 ATAA
66318 CAATAATATT
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
12 3 0.07
13 2 0.05
14 12 0.29
15 15 0.37
16 9 0.22
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (15 bp):
ATAATAAAATAAAAA
Found at i:66295 original size:12 final size:11
Alignment explanation
Indices: 66255--66325 Score: 58
Period size: 10 Copynumber: 6.3 Consensus size: 11
66245 TTAGACCTGG
*
66255 ATAATAAAACA
1 ATAATAAAATA
66266 A-AA-AATAATA
1 ATAATAA-AATA
*
66276 AAAATAAAATTA
1 ATAATAAAA-TA
66288 ATAATAAAA-A
1 ATAATAAAATA
66298 ATAATAAAATAA
1 ATAATAAAAT-A
66310 ATAAATAACAATA
1 AT-AATAA-AATA
66323 ATA
1 ATA
66326 TTATTATTAT
Statistics
Matches: 50, Mismatches: 2, Indels: 15
0.75 0.03 0.22
Matches are distributed among these distances:
9 2 0.04
10 16 0.32
11 5 0.10
12 16 0.32
13 8 0.16
14 3 0.06
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.23
Consensus pattern (11 bp):
ATAATAAAATA
Found at i:66302 original size:10 final size:10
Alignment explanation
Indices: 66265--66306 Score: 52
Period size: 9 Copynumber: 4.4 Consensus size: 10
66255 ATAATAAAAC
66265 AAAAAATAAT
1 AAAAAATAAT
66275 -AAAAATAA-
1 AAAAAATAAT
**
66283 AATTAATAAT
1 AAAAAATAAT
66293 AAAAAATAAT
1 AAAAAATAAT
66303 AAAA
1 AAAA
66307 TAAATAAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
9 14 0.54
10 12 0.46
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (10 bp):
AAAAAATAAT
Found at i:66308 original size:18 final size:17
Alignment explanation
Indices: 66255--66314 Score: 59
Period size: 19 Copynumber: 3.3 Consensus size: 17
66245 TTAGACCTGG
*
66255 ATAATAAAACAAAAAATA
1 ATAA-AAAATAAAAAATA
66273 AT-AAAAATAAAATTAATA
1 ATAAAAAATAAAA--AATA
66291 ATAAAAAATAATAAAATAA
1 ATAAAAAATAA-AAAAT-A
66310 ATAAA
1 ATAAA
66315 TAACAATAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
16 8 0.22
17 1 0.03
18 11 0.31
19 14 0.39
20 2 0.06
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.22
Consensus pattern (17 bp):
ATAAAAAATAAAAAATA
Found at i:66322 original size:19 final size:21
Alignment explanation
Indices: 66267--66328 Score: 60
Period size: 19 Copynumber: 3.0 Consensus size: 21
66257 AATAAAACAA
66267 AAAAT-AATAAAAATAAAATT
1 AAAATAAATAAAAATAAAATT
66287 AATAATAAA-AAATAATAAAA-T
1 AA-AATAAATAAA-AATAAAATT
* *
66308 -AAATAAATAACAATAATATT
1 AAAATAAATAAAAATAAAATT
66328 A
1 A
66329 TTATTATAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 11
0.72 0.04 0.23
Matches are distributed among these distances:
19 12 0.35
20 6 0.18
21 7 0.21
22 9 0.26
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.26
Consensus pattern (21 bp):
AAAATAAATAAAAATAAAATT
Found at i:66322 original size:22 final size:22
Alignment explanation
Indices: 66255--66325 Score: 76
Period size: 22 Copynumber: 3.3 Consensus size: 22
66245 TTAGACCTGG
*
66255 ATAATAAAACAAA-AAATAATAA
1 ATAATAAAATAAATAAATAA-AA
*
66277 A-AATAAAATTAAT-AATAAAAA
1 ATAATAAAATAAATAAAT-AAAA
*
66298 ATAATAAAATAAATAAATAACA
1 ATAATAAAATAAATAAATAAAA
66320 ATAATA
1 ATAATA
66326 TTATTATTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
21 15 0.37
22 23 0.56
23 3 0.07
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.23
Consensus pattern (22 bp):
ATAATAAAATAAATAAATAAAA
Found at i:66325 original size:13 final size:12
Alignment explanation
Indices: 66272--66325 Score: 53
Period size: 12 Copynumber: 4.6 Consensus size: 12
66262 AACAAAAAAT
66272 AATAA-AAATAA
1 AATAATAAATAA
66283 AATTAAT-AATAA
1 AA-TAATAAATAA
66295 AA-AAT-AATAA
1 AATAATAAATAA
66305 AATAAATAAATAA
1 AAT-AATAAATAA
66318 CAATAATA
1 -AATAATA
66326 TTATTATTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
10 10 0.27
11 2 0.05
12 13 0.35
13 9 0.24
14 3 0.08
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (12 bp):
AATAATAAATAA
Found at i:66408 original size:35 final size:36
Alignment explanation
Indices: 66342--66438 Score: 99
Period size: 35 Copynumber: 2.6 Consensus size: 36
66332 TTATAATAAT
*
66342 AAAAATATTTTCCAAAAAACTATATAATATATATT-TCAA
1 AAAAATATTTT-C--AAAATTATATAATATATATTCT-AA
* **
66381 AAAAATATTTT-AAAATTATATATTATATATTCTTT
1 AAAAATATTTTCAAAATTATATAATATATATTCTAA
*
66416 AAAAATGTTTTCAAAATTATATA
1 AAAAATATTTTCAAAATTATATA
66439 GTTTTCAAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
35 28 0.55
36 12 0.24
39 11 0.22
ACGTcount: A:0.51, C:0.06, G:0.01, T:0.42
Consensus pattern (36 bp):
AAAAATATTTTCAAAATTATATAATATATATTCTAA
Found at i:66471 original size:25 final size:25
Alignment explanation
Indices: 66439--66488 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
66429 AAATTATATA
*
66439 GTTTTCAAAAAT-ATTTTAAAACTAT
1 GTTTTC-AAAATGATTTCAAAACTAT
66464 GTTTTCAAAATGATTTCAAAACTAT
1 GTTTTCAAAATGATTTCAAAACTAT
66489 ATATTATATG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.22
25 18 0.78
ACGTcount: A:0.42, C:0.10, G:0.06, T:0.42
Consensus pattern (25 bp):
GTTTTCAAAATGATTTCAAAACTAT
Found at i:66535 original size:38 final size:38
Alignment explanation
Indices: 66465--66692 Score: 169
Period size: 38 Copynumber: 6.2 Consensus size: 38
66455 TAAAACTATG
* * * *
66465 TTTTCAAAATG-ATTTC-AAAACTATATATTATATGTA
1 TTTTCAAAATGTTTTTCAAAAACCATATAATATATATA
*
66501 TTTTCAAAATGTTTTTCAAAAACCATATAATATATACA
1 TTTTCAAAATGTTTTTCAAAAACCATATAATATATATA
*
66539 TTTTTAAAAATGTTTTTC-AAAA--A-AT-ATATA-ATA
1 -TTTTCAAAATGTTTTTCAAAAACCATATAATATATATA
* * *
66572 TTTTC-AAACGTTTTTCAAAAACTATATATTATATATA
1 TTTTCAAAATGTTTTTCAAAAACCATATAATATATATA
* * *
66609 CTTTTCAAAATATTTTT--AAAATCATATACTATATA-A
1 -TTTTCAAAATGTTTTTCAAAAACCATATAATATATATA
* * *
66645 GTTTTCTAAAAATATTTTT-AAAAGCCATATATTATATA-A
1 -TTTTC--AAAATGTTTTTCAAAAACCATATAATATATATA
*
66684 TTTCCAAAA
1 TTTTCAAAA
66693 ATGATGTCAA
Statistics
Matches: 158, Mismatches: 20, Indels: 28
0.77 0.10 0.14
Matches are distributed among these distances:
31 10 0.06
32 8 0.05
33 2 0.01
34 6 0.04
35 4 0.03
36 26 0.16
37 22 0.14
38 40 0.25
39 40 0.25
ACGTcount: A:0.44, C:0.10, G:0.03, T:0.43
Consensus pattern (38 bp):
TTTTCAAAATGTTTTTCAAAAACCATATAATATATATA
Found at i:66560 original size:39 final size:38
Alignment explanation
Indices: 66501--66695 Score: 149
Period size: 39 Copynumber: 5.3 Consensus size: 38
66491 ATTATATGTA
*
66501 TTTTCAAAATGTTTTTCAAAAACCATATAATATATACAT
1 TTTTAAAAATGTTTTTCAAAAACCATATAATATATA-AT
66540 TTTTAAAAATGTTTTTCAAAAA--ATAT-ATA-AT-A-
1 TTTTAAAAATGTTTTTCAAAAACCATATAATATATAAT
* * * * *
66572 TTTT-CAAACGTTTTTCAAAAACTATATATTATATATAC
1 TTTTAAAAATGTTTTTCAAAAACCATATAATATATA-AT
* * * *
66610 TTTTCAAAATATTTTT--AAAATCATATACTATATAAGT
1 TTTTAAAAATGTTTTTCAAAAACCATATAATATATAA-T
* * *
66647 TTTCTAAAAATATTTTT-AAAAGCCATATATTATATAAT
1 TTT-TAAAAATGTTTTTCAAAAACCATATAATATATAAT
**
66685 TTCCAAAAATG
1 TTTTAAAAATG
66696 ATGTCAAACT
Statistics
Matches: 127, Mismatches: 18, Indels: 24
0.75 0.11 0.14
Matches are distributed among these distances:
31 15 0.12
32 4 0.03
33 5 0.04
34 2 0.02
35 4 0.03
36 4 0.03
37 29 0.23
38 19 0.15
39 45 0.35
ACGTcount: A:0.44, C:0.10, G:0.03, T:0.43
Consensus pattern (38 bp):
TTTTAAAAATGTTTTTCAAAAACCATATAATATATAAT
Found at i:66565 original size:32 final size:31
Alignment explanation
Indices: 66529--66599 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
66519 AAAACCATAT
*
66529 AATATATACAT-TTTTAAAAATGTTTTTCAAAA
1 AATATATA-ATATTTT-AAAACGTTTTTCAAAA
*
66561 AATATATAATATTTTCAAACGTTTTTCAAAA
1 AATATATAATATTTTAAAACGTTTTTCAAAA
*
66592 ACTATATA
1 AATATATA
66600 TTATATATAC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
31 23 0.66
32 12 0.34
ACGTcount: A:0.46, C:0.08, G:0.03, T:0.42
Consensus pattern (31 bp):
AATATATAATATTTTAAAACGTTTTTCAAAA
Found at i:66636 original size:70 final size:71
Alignment explanation
Indices: 66499--66629 Score: 185
Period size: 70 Copynumber: 1.9 Consensus size: 71
66489 ATATTATATG
* * *
66499 TATTTTCAAAATGTTTTTCAAAAACCATATAATATATACATTTTTAAAAATGTTTTTCAAAAAAT
1 TATTTTCAAAACGTTTTTCAAAAACCATATAATATATACACTTTTAAAAATATTTTTCAAAAAAT
66564 ATATAA
66 ATATAA
* * * *
66570 TATTTTC-AAACGTTTTTCAAAAACTATATATTATATATACTTTTCAAAATATTTTT-AAAA
1 TATTTTCAAAACGTTTTTCAAAAACCATATAATATATACACTTTTAAAAATATTTTTCAAAA
66630 TCATATACTA
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
69 4 0.08
70 42 0.79
71 7 0.13
ACGTcount: A:0.44, C:0.09, G:0.02, T:0.44
Consensus pattern (71 bp):
TATTTTCAAAACGTTTTTCAAAAACCATATAATATATACACTTTTAAAAATATTTTTCAAAAAAT
ATATAA
Found at i:77027 original size:53 final size:54
Alignment explanation
Indices: 76929--77038 Score: 188
Period size: 53 Copynumber: 2.1 Consensus size: 54
76919 ATAGGAGATG
*
76929 AAATTATAAAATTGTAGGGAACGAAAATGTATTATCAAACATAAAATGTTAAAA
1 AAATTATAAAATTGTAGGGAACGAAAACGTATTATCAAACATAAAATGTTAAAA
76983 AAATCTAT-AAATTGTAGGGAACG-AAACGTATTATCAAACATAAAATGTTAAAA
1 AAAT-TATAAAATTGTAGGGAACGAAAACGTATTATCAAACATAAAATGTTAAAA
77036 AAA
1 AAA
77039 AATCTAAACT
Statistics
Matches: 54, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
53 32 0.59
54 19 0.35
55 3 0.06
ACGTcount: A:0.54, C:0.07, G:0.13, T:0.26
Consensus pattern (54 bp):
AAATTATAAAATTGTAGGGAACGAAAACGTATTATCAAACATAAAATGTTAAAA
Done.