Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009000.1 Hibiscus syriacus cultivar Beakdansim tig00112382_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1742898
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 9
Found at i:728352 original size:21 final size:21
Alignment explanation
Indices: 728326--728382 Score: 98
Period size: 21 Copynumber: 2.7 Consensus size: 21
728316 AATTATTTTT
728326 TAATAATAATAATAAT-ATATA
1 TAATAATAATAATAATAAT-TA
728347 TAATAATAATAATAATAATTA
1 TAATAATAATAATAATAATTA
728368 TAATAATAATAATAA
1 TAATAATAATAATAA
728383 AATGGGTAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
21 33 0.94
22 2 0.06
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (21 bp):
TAATAATAATAATAATAATTA
Found at i:728642 original size:17 final size:17
Alignment explanation
Indices: 728620--728678 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
728610 TTGAACAAGC
728620 TCTTCTCATTGTGAACT
1 TCTTCTCATTGTGAACT
*
728637 TCTTCTTC-TTCAGATG-AGT
1 TCTTC-TCATT--G-TGAACT
728656 TCTTCTCATTGTGAACT
1 TCTTCTCATTGTGAACT
728673 TCTTCT
1 TCTTCT
728679 GGAAATGCTG
Statistics
Matches: 34, Mismatches: 2, Indels: 12
0.71 0.04 0.25
Matches are distributed among these distances:
16 2 0.06
17 16 0.47
18 4 0.12
19 10 0.29
20 2 0.06
ACGTcount: A:0.15, C:0.24, G:0.12, T:0.49
Consensus pattern (17 bp):
TCTTCTCATTGTGAACT
Found at i:728758 original size:120 final size:121
Alignment explanation
Indices: 728579--728802 Score: 339
Period size: 124 Copynumber: 1.8 Consensus size: 121
728569 GATGACAATT
* *
728579 TATCTCCTTCTGTGATGTAATCTAGCAAAGGTTGAACAAGCTCTTCTCATTGTGAA-CTTCTTC-
1 TATCTCCTTCTGTGATGTAATCTAGCAAAGGTCGAACAAGCTCTTCTCATTATGAATCTTCTTCT
*
728642 TTCTTCAGATGAGTTCTTCTCATTGTGAACTTCTTCTGGAAATGCTGATGATGATA
66 TTCTTCAGATGAGTTCTTCTCATTATGAACTTCTTCTGGAAATGCTGATGATGATA
*
728698 TATCTCCTTCTGTGATAG-AGTC-ATGCAAAAGGTCGAACAAGCTCTTCTCATTATGAACTTCTT
1 TATCTCCTTCTGTGAT-GTAATCTA-GC-AAAGGTCGAACAAGCTCTTCTCATTATGAA--TCTT
728761 CTTCTTTCTTCAGATGAGTTCTTCTCATTATGAACTTCTTCT
61 CTTCTTTCTTCAGATGAGTTCTTCTCATTATGAACTTCTTCT
728803 TCTTTCTTCA
Statistics
Matches: 94, Mismatches: 4, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
118 1 0.01
119 21 0.22
120 29 0.31
123 7 0.07
124 36 0.38
ACGTcount: A:0.23, C:0.21, G:0.16, T:0.40
Consensus pattern (121 bp):
TATCTCCTTCTGTGATGTAATCTAGCAAAGGTCGAACAAGCTCTTCTCATTATGAATCTTCTTCT
TTCTTCAGATGAGTTCTTCTCATTATGAACTTCTTCTGGAAATGCTGATGATGATA
Found at i:728795 original size:40 final size:40
Alignment explanation
Indices: 728740--728834 Score: 190
Period size: 40 Copynumber: 2.4 Consensus size: 40
728730 TCGAACAAGC
728740 TCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGT
1 TCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGT
728780 TCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGT
1 TCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGT
728820 TCTTCTCATTATGAA
1 TCTTCTCATTATGAA
728835 ATCTACCTGG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.19, C:0.22, G:0.09, T:0.49
Consensus pattern (40 bp):
TCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGT
Found at i:729072 original size:229 final size:226
Alignment explanation
Indices: 728779--729322 Score: 872
Period size: 229 Copynumber: 2.4 Consensus size: 226
728769 TTCAGATGAG
* * *
728779 TTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATTATGAAATCTACCTG
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTG
728844 GCAATGCTGATCCATCAAATGATGAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAAC
66 GCAATGCTGATCCATCAAATGATGAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAAC
* *
728909 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATTCATCA
131 TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATAA
*
728974 AGTGATGGATTTGAGCAAAAGATTGAACAAA
196 AATGATGGATTTGAGCAAAAGATTGAACAAA
* *
729005 TTCTTCTTATTATGAATTTCTTCCTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAC
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTATGAACTCTAC
* * * * *
729070 CTGGCAATGTTGTTCTATCAAATGATGAATTTAAACAAAAGGTTGAACAAGTTCTTCTCATTATG
63 CTGGCAATGCTGATCCATCAAATGATGAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATG
* *
729135 AACTTCTTCTTCCTTCTTCAGATGGGTTCTTCTCATTATGAACTTTTTCTGGAAAAGCTGATCCA
128 AACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCA
*
729200 TAAAATGATGGATTTGAGCAAAAGGTTGAACAAA
193 TAAAATGATGGATTTGAGCAAAAGATTGAACAAA
* **
729234 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTG
1 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTG
* *
729299 GAAAAGCTGATCCATCAAATGATG
66 GCAATGCTGATCCATCAAATGATG
729323 GATTTGAGTC
Statistics
Matches: 289, Mismatches: 26, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
226 77 0.27
229 212 0.73
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (226 bp):
TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTG
GCAATGCTGATCCATCAAATGATGAATTCAAACAAAAGGTTGAACAAATTCTTCTCATTATGAAC
TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATAA
AATGATGGATTTGAGCAAAAGATTGAACAAA
Found at i:729328 original size:113 final size:113
Alignment explanation
Indices: 728779--729330 Score: 780
Period size: 113 Copynumber: 4.9 Consensus size: 113
728769 TTCAGATGAG
* * * *
728779 TTCTTCTCATTATGAACTTCTTCTTCTTTCTTCAGATGAGTTCTTCTCATTATGAAATCTACCTG
1 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTATCTG
* * * ** *
728844 GCAATGCTGATCCATCAAATGATGAATTCAAACAAAAGGTTGAACAAA
66 GAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAA
*
728892 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTG
1 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTATCTG
* * *
728957 GAAAAGCTGATTCATCAAGTGATGGATTTGAGCAAAAGATTGAACAAA
66 GAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAA
* * * * *
729005 TTCTTCTTATTATGAATTTCTTCCTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAC
1 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTATGAACTTTAT
* * * * * * * * *
729070 CTGGCAATGTTGTTCTATCAAATGATGAATTTAAACAAAAGGTTGAACAAG
63 CTGGAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAA
* *
729121 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGGGTTCTTCTCATTATGAACTTTTTCTG
1 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTATCTG
*
729186 GAAAAGCTGATCCATAAAATGATGGATTTGAGCAAAAGGTTGAACAAA
66 GAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAA
* *
729234 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTTTCTG
1 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTATCTG
729299 GAAAAGCTGATCCATCAAATGATGGATTTGAG
66 GAAAAGCTGATCCATCAAATGATGGATTTGAG
729331 TCTTTGCTAA
Statistics
Matches: 384, Mismatches: 52, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
113 289 0.75
116 95 0.25
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (113 bp):
TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTATCTG
GAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGGTTGAACAAA
Found at i:729755 original size:22 final size:22
Alignment explanation
Indices: 729730--729784 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
729720 GATAAAGCTT
*
729730 TCATCTTTGAAAAGAGAATCTG
1 TCATCTTTGAAAAGAGAATCTA
* *
729752 TCATCTTTAAAAAGGGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
729774 TCATCTTTGAA
1 TCATCTTTGAA
729785 GAGTGTAGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.35
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:734483 original size:16 final size:16
Alignment explanation
Indices: 734464--734507 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
734454 CTTTCCTTTT
734464 TTTTTTCTTTTTC-TC
1 TTTTTTCTTTTTCATC
*
734479 ATTTTTACTTTTTCATC
1 -TTTTTTCTTTTTCATC
734496 TTTTTTCTTTTT
1 TTTTTTCTTTTT
734508 TTCTTTCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 23 0.92
17 2 0.08
ACGTcount: A:0.07, C:0.16, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTTTCTTTTTCATC
Found at i:734500 original size:10 final size:8
Alignment explanation
Indices: 734463--734513 Score: 50
Period size: 8 Copynumber: 6.4 Consensus size: 8
734453 TCTTTCCTTT
734463 TTTTTTTC
1 TTTTTTTC
*
734471 TTTTTCTC
1 TTTTTTTC
* *
734479 ATTTTTAC
1 TTTTTTTC
*
734487 TTTTTCATC
1 TTTTT-TTC
734496 -TTTTTTC
1 TTTTTTTC
734503 TTTTTTTC
1 TTTTTTTC
734511 TTT
1 TTT
734514 CTTTGCTGGA
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
7 2 0.06
8 30 0.91
9 1 0.03
ACGTcount: A:0.06, C:0.16, G:0.00, T:0.78
Consensus pattern (8 bp):
TTTTTTTC
Found at i:738155 original size:15 final size:14
Alignment explanation
Indices: 738127--738187 Score: 68
Period size: 14 Copynumber: 4.3 Consensus size: 14
738117 AAAGCAAACA
*
738127 TAAAAATACAAATG
1 TAAAAATGCAAATG
*
738141 TAAAGATGCCAAATG
1 TAAAAATG-CAAATG
* *
738156 TAAATATGCAATTG
1 TAAAAATGCAAATG
*
738170 TAAAAATGTAAATG
1 TAAAAATGCAAATG
738184 TAAA
1 TAAA
738188 TTATTTAAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
14 26 0.67
15 13 0.33
ACGTcount: A:0.54, C:0.07, G:0.13, T:0.26
Consensus pattern (14 bp):
TAAAAATGCAAATG
Found at i:738497 original size:43 final size:43
Alignment explanation
Indices: 738436--738521 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
738426 CGGTACATCA
* *
738436 AACAAAACTTTACATATAGGGGATATCTTTCAGTCCTAACTTC
1 AACAAAACTTTACATATAGGGGATAACTTTCACTCCTAACTTC
*
738479 AACAAAACTTTACATATAGGGGATAACTTTCCCTCCTAACTTC
1 AACAAAACTTTACATATAGGGGATAACTTTCACTCCTAACTTC
738522 TCTAAAGACA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.35, C:0.23, G:0.10, T:0.31
Consensus pattern (43 bp):
AACAAAACTTTACATATAGGGGATAACTTTCACTCCTAACTTC
Found at i:739906 original size:25 final size:25
Alignment explanation
Indices: 739878--739936 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
739868 TTAATACCTG
*
739878 AAAAAAAAT-ATTAATAAAATAATAT
1 AAAAAAAATAAGTAATAAAA-AATAT
* *
739903 AAAAATAATAAGTAATAAAAAATTT
1 AAAAAAAATAAGTAATAAAAAATAT
739928 AAAAGAAAA
1 AAAA-AAAA
739937 GAATTAAAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
25 16 0.57
26 12 0.43
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (25 bp):
AAAAAAAATAAGTAATAAAAAATAT
Found at i:740737 original size:3 final size:3
Alignment explanation
Indices: 740722--740780 Score: 52
Period size: 3 Copynumber: 20.3 Consensus size: 3
740712 TACTTATATA
* * **
740722 AAT AAT AAA AAT AAT AAT AAT GA- AAT AAT AATT AA- AGC AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT
740766 AAT AAT AA- AAT AAT A
1 AAT AAT AAT AAT AAT A
740781 TTGCAAATAA
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
2 4 0.09
3 38 0.84
4 3 0.07
ACGTcount: A:0.68, C:0.02, G:0.03, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:740789 original size:26 final size:28
Alignment explanation
Indices: 740730--740791 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 28
740720 TAAATAATAA
*
740730 AAATAATAATAATGAAATAATAATTAAAGC
1 AAATAATAATAATAAAATAATAATT--AGC
740760 -AATAATAATAATAAAATAAT-ATT-GC
1 AAATAATAATAATAAAATAATAATTAGC
740785 AAATAAT
1 AAATAAT
740792 GATTAAAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
25 2 0.07
26 6 0.20
28 3 0.10
29 19 0.63
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (28 bp):
AAATAATAATAATAAAATAATAATTAGC
Found at i:742079 original size:3 final size:3
Alignment explanation
Indices: 742071--742116 Score: 83
Period size: 3 Copynumber: 15.0 Consensus size: 3
742061 AATTATTTTT
742071 TAA TAA TAA TAA TAA TATA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
742117 AATGGGTAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 39 0.93
4 3 0.07
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:743422 original size:208 final size:209
Alignment explanation
Indices: 742835--743533 Score: 972
Period size: 208 Copynumber: 3.3 Consensus size: 209
742825 ATTTAAGAAT
* *
742835 TAAATTGAACAAATATGAAATTACAAATTAAAATTTAAATAAATTAAACAACACACATTGATGAG
1 TAAATTGAACAAATATGAAATTAAAAATAAAAATTTAAATAAATTAAAC-A-ACACA-T-A-GAG
* *
742900 GGATCAAATCAAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAAGTACTAAATTATAC
61 GGATCAAATCGAAATAATTTTAAATTGAGAGGTTGAAATTAATACAAAAAAGTACTAAATTATAC
* * *
742965 CCATTTAAAAAGATATGGGCCAATT---AA-A-AAAT-AGAAATAAGTATGGGTCAATTTTAGAT
126 CCATTTAAAAAGTTATGGG-CAATTAAAAATAGAAATAAGTAATAAGTATGGGTCAATTTCAGAT
743024 GCAAATAAAATTTGGAGGAC
190 GCAAATAAAATTTGGAGGAC
* * *
743044 TAAATTGAAGAAATATGAAATTACAAATTAAAAATTTAAATAAATTAAAGAACAAACATTGATGA
1 TAAATTGAACAAATATGAAATTA-AAAATAAAAATTTAAATAAATTAAACAAC--ACA-T-A-GA
*
743109 GGGATCAAATCGAAATAATTTTAAATTGATAGGTTGAAATTAATACAAAAAAGTACTAAATTATA
60 GGGATCAAATCGAAATAATTTTAAATTGAGAGGTTGAAATTAATACAAAAAAGTACTAAATTATA
** * * *
743174 CATATTTAAAAAGTTACGCGCAATTAAAAAATAGAAATAAGTAATAAGTATGGGTCAATTTCAAA
125 CCCATTTAAAAAGTTATGGGCAATT-AAAAATAGAAATAAGTAATAAGTATGGGTCAATTTCAGA
743239 TGCAAATAAAATTTGGAGGAC
189 TGCAAATAAAATTTGGAGGAC
*
743260 TAAATTGAACAAATATGAAATTAAAAATAAAAAATTAAATAAATTAAACAACACA-A-AGGGATC
1 TAAATTGAACAAATATGAAATTAAAAATAAAAATTTAAATAAATTAAACAACACATAGAGGGATC
*
743323 AAATCGAAATAATTTTAAATTGCGAGGTTGAAATTAATACAAAAAA-TACTAAATTATACCCATT
66 AAATCGAAATAATTTTAAATTGAGAGGTTGAAATTAATACAAAAAAGTACTAAATTATACCCATT
*
743387 TAAAAAGTTTTGGGCAAATTAAAATATAGAAATAAGTAATAAGTATGGGTCAATTTCAGATGCAA
131 TAAAAAGTTATGGGC-AATTAAAA-ATAGAAATAAGTAATAAGTATGGGTCAATTTCAGATGCAA
*
743452 ATAAAATTTAGAGGAC
194 ATAAAATTTGGAGGAC
* * *
743468 TAAATTGAATAAATATGAAATTACAAAT-AAAATTTAAATAAATTAAAC-A-ACATAAAGGGATC
1 TAAATTGAACAAATATGAAATTAAAAATAAAAATTTAAATAAATTAAACAACACATAGAGGGATC
743530 AAAT
66 AAAT
743534 ATGAAAAATA
Statistics
Matches: 444, Mismatches: 32, Indels: 30
0.88 0.06 0.06
Matches are distributed among these distances:
205 3 0.01
206 2 0.00
207 62 0.14
208 137 0.31
209 28 0.06
210 110 0.25
213 5 0.01
214 1 0.00
215 30 0.07
216 66 0.15
ACGTcount: A:0.52, C:0.08, G:0.13, T:0.28
Consensus pattern (209 bp):
TAAATTGAACAAATATGAAATTAAAAATAAAAATTTAAATAAATTAAACAACACATAGAGGGATC
AAATCGAAATAATTTTAAATTGAGAGGTTGAAATTAATACAAAAAAGTACTAAATTATACCCATT
TAAAAAGTTATGGGCAATTAAAAATAGAAATAAGTAATAAGTATGGGTCAATTTCAGATGCAAAT
AAAATTTGGAGGAC
Found at i:744485 original size:20 final size:21
Alignment explanation
Indices: 744460--744552 Score: 91
Period size: 21 Copynumber: 4.5 Consensus size: 21
744450 TTTTCCCAAT
*
744460 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
744480 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
* *
744501 TCGTAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
744521 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
744542 TCGCAATGCGA
1 TCGCAATGCGA
744553 TACTGACTAT
Statistics
Matches: 56, Mismatches: 15, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
20 26 0.46
21 30 0.54
ACGTcount: A:0.40, C:0.17, G:0.25, T:0.18
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:744509 original size:41 final size:41
Alignment explanation
Indices: 744460--744552 Score: 177
Period size: 41 Copynumber: 2.3 Consensus size: 41
744450 TTTTCCCAAT
744460 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
*
744501 TCGTAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
744542 TCGCAATGCGA
1 TCGCAATGCGA
744553 TACTGACTAT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.40, C:0.17, G:0.25, T:0.18
Consensus pattern (41 bp):
TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
Found at i:744565 original size:41 final size:41
Alignment explanation
Indices: 744479--744613 Score: 123
Period size: 41 Copynumber: 3.3 Consensus size: 41
744469 GAATAAGTAA
* * *
744479 ATCGCAACGCGAATTGGGAAAATCGTAATGCGAATA-AGTA-A
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCG-ATACTG-ACT
744520 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
* * ** * * *
744561 ATCGCAATGCGATAAT-AAAAAATCGCAACGAGATACTTACT
1 ATCGCAACGCGA-ATTGGGAAAATCGCAATGCGATACTGACT
*
744602 TTCGCAACGCGA
1 ATCGCAACGCGA
744614 TACTGACTTT
Statistics
Matches: 79, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
40 4 0.05
41 73 0.92
42 2 0.03
ACGTcount: A:0.39, C:0.20, G:0.21, T:0.20
Consensus pattern (41 bp):
ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
Found at i:744566 original size:20 final size:20
Alignment explanation
Indices: 744541--744634 Score: 89
Period size: 20 Copynumber: 4.7 Consensus size: 20
744531 AATTGGGAAA
*
744541 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * * **
744561 ATCGCAATGCGATAATAAAAA
1 ATCGCAACGCGATACT-GACT
* *
744582 ATCGCAACGAGATACTTACT
1 ATCGCAACGCGATACTGACT
*
744602 TTCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
*
744622 TTCGCAACGCGAT
1 ATCGCAACGCGAT
744635 TTACATAGCG
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 46 0.77
21 14 0.23
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.23
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:745190 original size:19 final size:19
Alignment explanation
Indices: 745152--745207 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 19
745142 TTCGAGAATG
745152 AAAATCGCAACGCGGAAATA
1 AAAATCGCAACGC-GAAATA
**
745172 ACTATCGCAACGCGAAATA
1 AAAATCGCAACGCGAAATA
745191 AAAATCGCAACGCGAAA
1 AAAATCGCAACGCGAAA
745208 CCAAAATCAC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 21 0.66
20 11 0.34
ACGTcount: A:0.48, C:0.23, G:0.18, T:0.11
Consensus pattern (19 bp):
AAAATCGCAACGCGAAATA
Found at i:745241 original size:19 final size:19
Alignment explanation
Indices: 745219--745378 Score: 160
Period size: 19 Copynumber: 8.8 Consensus size: 19
745209 CAAAATCACA
745219 TTGCGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCGCG
745238 TTGCGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCGCG
*
745257 TTGCGATTTTTATTTCGCGG
1 TTGCGATTTTCATTTCGC-G
745277 TTGCGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCGCG
*
745296 TTGCGATTGTC---T-G-G
1 TTGCGATTTTCATTTCGCG
* **
745310 TCGCGATAGTCATTTCGCG
1 TTGCGATTTTCATTTCGCG
*
745329 TTGCGA--TTC---TCTCG
1 TTGCGATTTTCATTTCGCG
**
745343 TTGCGATAGTCATTTCCGCG
1 TTGCGATTTTCATTT-CGCG
745363 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
745379 AACCAAAAGA
Statistics
Matches: 117, Mismatches: 12, Indels: 24
0.76 0.08 0.16
Matches are distributed among these distances:
14 20 0.17
15 1 0.01
16 3 0.03
17 3 0.03
18 1 0.01
19 55 0.47
20 34 0.29
ACGTcount: A:0.11, C:0.21, G:0.23, T:0.44
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCG
Found at i:745291 original size:39 final size:38
Alignment explanation
Indices: 745219--745378 Score: 160
Period size: 33 Copynumber: 4.4 Consensus size: 38
745209 CAAAATCACA
745219 TTGCGATTTTCATTTCGCGTTGCGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCGCGTTGCGATTTTCATTTCGCG
*
745257 TTGCGATTTTTATTTCGCGGTTGCGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCGC-GTTGCGATTTTCATTTCGCG
* * **
745296 TTGCGATTGTC---T-G-GTCGCGATAGTCATTTCGCG
1 TTGCGATTTTCATTTCGCGTTGCGATTTTCATTTCGCG
* **
745329 TTGCGA--TTC---TCTCGTTGCGATAGTCATTTCCGCG
1 TTGCGATTTTCATTTCGCGTTGCGATTTTCATTT-CGCG
745363 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
745379 AACCAAAAGA
Statistics
Matches: 104, Mismatches: 9, Indels: 17
0.80 0.07 0.13
Matches are distributed among these distances:
31 3 0.03
33 38 0.37
34 10 0.10
35 1 0.01
36 4 0.04
38 17 0.16
39 31 0.30
ACGTcount: A:0.11, C:0.21, G:0.23, T:0.44
Consensus pattern (38 bp):
TTGCGATTTTCATTTCGCGTTGCGATTTTCATTTCGCG
Found at i:747440 original size:42 final size:42
Alignment explanation
Indices: 747380--747502 Score: 122
Period size: 42 Copynumber: 2.9 Consensus size: 42
747370 GCCCGACTCG
* * *
747380 CCTATCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * *
747422 CCTATCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * ** * *
747464 ACTGTCATCGTTAAAGAGGTCC-CTCCCACCATTCAAGAG
1 CCTATCATCCCTCAAGA-GTCCACTCCCACCGTTCAAGAG
747503 CCCGATTCAC
Statistics
Matches: 66, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
42 62 0.94
43 4 0.06
ACGTcount: A:0.24, C:0.37, G:0.17, T:0.23
Consensus pattern (42 bp):
CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
Found at i:747460 original size:21 final size:21
Alignment explanation
Indices: 747436--747502 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
747426 TCATTCCTCG
747436 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
747457 AGAGGCCACTGTCATCGTTAA
1 AGAGTCCCCTCCCACCGTTCA
*
747478 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
747499 AGAG
1 AGAG
747503 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.25, C:0.36, G:0.19, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:748877 original size:14 final size:14
Alignment explanation
Indices: 748860--748895 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
748850 ATTGTTTAAT
748860 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
748874 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
748888 TGATTTGT
1 TGATTTGT
748896 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:749096 original size:19 final size:19
Alignment explanation
Indices: 749074--749224 Score: 80
Period size: 19 Copynumber: 8.7 Consensus size: 19
749064 CGAAATTAAA
749074 TTCGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
749093 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
* *
749108 -CCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* *
749126 TTCGCATTGCGA-----AA
1 TTCGCGTTGCGATTTTCAT
*
749140 TTAGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
749159 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
*
749174 -TCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* ** *
749192 TTCGCATTGCGATAGTAAT
1 TTCGCGTTGCGATTTTCAT
749211 TTCCGCGTTGCGAT
1 TT-CGCGTTGCGAT
749225 GGACATTAAG
Statistics
Matches: 95, Mismatches: 21, Indels: 31
0.65 0.14 0.21
Matches are distributed among these distances:
14 28 0.29
16 6 0.06
17 6 0.06
19 45 0.47
20 10 0.11
ACGTcount: A:0.15, C:0.23, G:0.21, T:0.42
Consensus pattern (19 bp):
TTCGCGTTGCGATTTTCAT
Found at i:749120 original size:33 final size:32
Alignment explanation
Indices: 749078--749204 Score: 193
Period size: 33 Copynumber: 3.9 Consensus size: 32
749068 ATTAAATTCG
749078 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATT-CCT
**
749111 CGTTGCGATTTTCATTTCGCATTGCGAAATT-AG
1 CGTTGCGATTTTCATTTCGCATTGCG--ATTCCT
749144 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTC-CT
749177 CGTTGCGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
749205 AGTAATTTCC
Statistics
Matches: 86, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
31 3 0.03
33 80 0.93
35 3 0.03
ACGTcount: A:0.15, C:0.23, G:0.20, T:0.43
Consensus pattern (32 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCT
Found at i:749167 original size:66 final size:66
Alignment explanation
Indices: 749071--749203 Score: 248
Period size: 66 Copynumber: 2.0 Consensus size: 66
749061 ATGCGAAATT
*
749071 AAATTCGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
1 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
749136 G
66 G
*
749137 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGC
1 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
749202 G
66 G
749203 A
1 A
749204 TAGTAATTTC
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.17, C:0.23, G:0.20, T:0.41
Consensus pattern (66 bp):
AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
G
Found at i:751514 original size:12 final size:12
Alignment explanation
Indices: 751497--751521 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
751487 TCTTCGGGGA
751497 CTTTTTCTTCTT
1 CTTTTTCTTCTT
751509 CTTTTTCTTCTT
1 CTTTTTCTTCTT
751521 C
1 C
751522 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:751730 original size:24 final size:24
Alignment explanation
Indices: 751696--751749 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
751686 CTGAAACATC
* *
751696 ATCAAAATCCGTGTATTGACCAAT
1 ATCAAAATCCGGGTATTGACCAAG
*
751720 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGGGTATTGACCAAG
751744 ATCAAA
1 ATCAAA
751750 TTTCGAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (24 bp):
ATCAAAATCCGGGTATTGACCAAG
Found at i:752834 original size:20 final size:20
Alignment explanation
Indices: 752809--752866 Score: 107
Period size: 20 Copynumber: 2.9 Consensus size: 20
752799 ATTCATTTGA
752809 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
752829 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
*
752849 CTATCGCAACGAGAAAAT
1 CTATCGCAACGCGAAAAT
752867 CGCAATGCGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.38, C:0.24, G:0.22, T:0.16
Consensus pattern (20 bp):
CTATCGCAACGCGAAAATGG
Found at i:752926 original size:19 final size:19
Alignment explanation
Indices: 752885--752952 Score: 92
Period size: 19 Copynumber: 3.8 Consensus size: 19
752875 GAAATGAAAA
752885 TCGCATTGCGATTTTC---
1 TCGCATTGCGATTTTCATT
752901 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
752918 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
752937 TTGCATTGCGATTTTC
1 TCGCATTGCGATTTTC
752953 TCGTTGCGAT
Statistics
Matches: 46, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
14 11 0.24
16 3 0.07
17 3 0.07
19 29 0.63
ACGTcount: A:0.13, C:0.21, G:0.18, T:0.49
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:753088 original size:14 final size:14
Alignment explanation
Indices: 753069--753105 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
753059 CATCAATTAA
753069 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
753083 ACAAATCATCTTTT
1 ACAAATCAACATTT
753097 ACAAATCAA
1 ACAAATCAA
753106 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:755008 original size:20 final size:19
Alignment explanation
Indices: 754973--755039 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
754963 GAAACTTAAA
754973 ATCGCAACGCGAAATGACT
1 ATCGCAACGCGAAATGACT
*
754992 ATCGCAACGCGGAAATGGCT
1 ATCGCAACGC-GAAATGACT
* **
755012 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGACT
755031 ATCGCAACG
1 ATCGCAACG
755040 ACAAAATCGC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
19 24 0.59
20 17 0.41
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (19 bp):
ATCGCAACGCGAAATGACT
Found at i:755047 original size:14 final size:14
Alignment explanation
Indices: 755028--755085 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
755018 ATGCGAAATG
755028 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
755042 AAAATCGCAACGCGAA
1 AAAATCGCAA--CGAC
755058 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
755074 AAAATCGCAACG
1 AAAATCGCAACG
755086 CGAAACACAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.48, C:0.26, G:0.17, T:0.09
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:755070 original size:32 final size:33
Alignment explanation
Indices: 755012--755090 Score: 142
Period size: 32 Copynumber: 2.4 Consensus size: 33
755002 GGAAATGGCT
*
755012 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
755045 ATCGCAACGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
755077 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
755091 CACAAATCGC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
32 30 0.67
33 15 0.33
ACGTcount: A:0.47, C:0.24, G:0.19, T:0.10
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAAA
Found at i:755138 original size:14 final size:14
Alignment explanation
Indices: 755119--755176 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
755109 TTTCATTTCG
755119 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
755133 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
755149 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
755165 CGTTGCGATTTT
1 CGTTGCGATTTT
755177 CATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.10, C:0.17, G:0.24, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:755183 original size:33 final size:33
Alignment explanation
Indices: 755102--755192 Score: 166
Period size: 32 Copynumber: 2.8 Consensus size: 33
755092 ACAAATCGCA
*
755102 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
755135 TTGCGA-TTTCATTTCGCATTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
755167 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGAT
755193 AGCCATTTCC
Statistics
Matches: 56, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
32 31 0.55
33 25 0.45
ACGTcount: A:0.12, C:0.19, G:0.22, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
Found at i:755199 original size:19 final size:20
Alignment explanation
Indices: 755177--755220 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
755167 TTGCGATTTT
*
755177 CATTT-CGCATTGCGATAGC
1 CATTTCCGCATTACGATAGC
* *
755196 CATTTCCGCGTTACGATAGT
1 CATTTCCGCATTACGATAGC
755216 CATTT
1 CATTT
755221 TCGTGTTGTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.36
Consensus pattern (20 bp):
CATTTCCGCATTACGATAGC
Found at i:755724 original size:18 final size:18
Alignment explanation
Indices: 755698--755742 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
755688 GTCGATCAGA
*
755698 TGATGGCTCTGGGTGAGG
1 TGATGGCTCTGGGCGAGG
*
755716 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTGGGCGAGG
755734 TGATGGCTC
1 TGATGGCTC
755743 CCGAAGTGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.13, C:0.16, G:0.44, T:0.27
Consensus pattern (18 bp):
TGATGGCTCTGGGCGAGG
Found at i:757084 original size:20 final size:20
Alignment explanation
Indices: 757059--757096 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
757049 AATAGTTTCT
757059 GAAAATGAAAATCGCAACAC
1 GAAAATGAAAATCGCAACAC
**
757079 GAAAATGACTATCGCAAC
1 GAAAATGAAAATCGCAAC
757097 GAGAGAATCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.21, G:0.16, T:0.13
Consensus pattern (20 bp):
GAAAATGAAAATCGCAACAC
Found at i:757382 original size:22 final size:22
Alignment explanation
Indices: 757357--757400 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
757347 GATTTAGATA
757357 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
757379 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
757401 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:757613 original size:20 final size:20
Alignment explanation
Indices: 757588--757640 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
757578 GATTATGTAT
*
757588 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTAAG
757608 TATCGCGTTGCGAAAGTAAG
1 TATCGCGTTGCGAAAGTAAG
*
757628 TATCTCGTTGCGA
1 TATCGCGTTGCGA
757641 TTTTTTATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTAAG
Found at i:757709 original size:20 final size:20
Alignment explanation
Indices: 757684--757757 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
757674 GATTTTCCCA
*
757684 ATTCGCGTTGCGATTTACTT
1 ATTCGCATTGCGATTTACTT
* **
757704 ATTCGCATTGCGATTTTCCCA
1 ATTCGCATTGCGA-TTTACTT
*
757725 ATTCGCGTTGCGATTTACTT
1 ATTCGCATTGCGATTTACTT
757745 ATTCGCATTGCGA
1 ATTCGCATTGCGA
757758 ATTGGGAAAA
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.18, C:0.23, G:0.19, T:0.41
Consensus pattern (20 bp):
ATTCGCATTGCGATTTACTT
Found at i:757731 original size:41 final size:41
Alignment explanation
Indices: 757674--757757 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
757664 GTCAGTTTGT
757674 GATTTTCCCAATTCGCGTTGCGATTTACTTATTCGCATTGC
1 GATTTTCCCAATTCGCGTTGCGATTTACTTATTCGCATTGC
757715 GATTTTCCCAATTCGCGTTGCGATTTACTTATTCGCATTGC
1 GATTTTCCCAATTCGCGTTGCGATTTACTTATTCGCATTGC
757756 GA
1 GA
757758 ATTGGGAAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.40
Consensus pattern (41 bp):
GATTTTCCCAATTCGCGTTGCGATTTACTTATTCGCATTGC
Found at i:758380 original size:209 final size:210
Alignment explanation
Indices: 757968--758613 Score: 960
Period size: 209 Copynumber: 3.1 Consensus size: 210
757958 TATTTTCTCT
* * * *
757968 TAAGTAATAAGTATGGATCAATTTCATATGCAAATAAAATTTGGAGGATTAAATTGAATAAATAT
1 TAAGTAATAAGTATGGGTCAATTTCAGATGCAAATAAAATTTGGAGGACTAAATTGAACAAATAT
* * * *
758033 GAAATTACAAATAAAAAGTTAAATAAATTAAACAACACACATTGATGATGGATCAAATCGAAATA
66 GAAATTACAAAAAAAAATTTAAATATATTAAACAACACA-A---A--AGGGATCAAATCGAAATA
* ** ** *
758098 ATTTTATATCGTGATTTTGAAATTAATACAAAAAAGTACCAAATTATACCCATTTAAAAAGTTAT
125 ATTTTAAATTTTGAGGTTGAAATTAATACAAAAAAGTACTAAATTATACCCATTTAAAAAGTTAT
*
758163 GTGCCAATTTAAAAATAGAAA
190 GGGCCAATTTAAAAATAGAAA
758184 TAAGTAATAAGTATGGGTCAATTTCAGATGCAAATAAAATTTGGAGGACTAAATTGAACAAATAT
1 TAAGTAATAAGTATGGGTCAATTTCAGATGCAAATAAAATTTGGAGGACTAAATTGAACAAATAT
**
758249 GAAATTACAAAAAAAAATTTAAATATATTAAACAACACAAAAGGGATCAAATTTAAATAA-TTTA
66 GAAATTACAAAAAAAAATTTAAATATATTAAACAACACAAAAGGGATCAAATCGAAATAATTTTA
758313 AATTTTGAGGTTGAAATTAATACAAAAAAGTACTAAATTATACCCATTTAAAAAGTTATGGGCCA
131 AATTTTGAGGTTGAAATTAATACAAAAAAGTACTAAATTATACCCATTTAAAAAGTTATGGGCCA
*
758378 ATTTAAAAATATAAA
196 ATTTAAAAATAGAAA
*
758393 TAAGTAATAAGTATGGGTCAATTTCAGGTGCAAATAAAATTTGGAGGACTAAATTGAACAAATAT
1 TAAGTAATAAGTATGGGTCAATTTCAGATGCAAATAAAATTTGGAGGACTAAATTGAACAAATAT
**
758458 GAAATTA-AAAATAAAAATTTAAATATATTAAATTACACAAAAAGGG-TCAAATCGAAATAATTT
66 GAAATTACAAAA-AAAAATTTAAATATATTAAACAACAC-AAAAGGGATCAAATCGAAATAATTT
* * *
758521 TAAATTTTGAGGTTGAAATTAATA-AAAAATGTACTAAATTATACTCATTTAAAAAGTTATGGGT
129 TAAATTTTGAGGTTGAAATTAATACAAAAAAGTACTAAATTATACCCATTTAAAAAGTTATGGGC
758585 CAA-TTAATAAATAGAAA
194 CAATTTAA-AAATAGAAA
758602 TAAGTAATAAGT
1 TAAGTAATAAGT
758614 TGAGAAAAAA
Statistics
Matches: 399, Mismatches: 27, Indels: 15
0.90 0.06 0.03
Matches are distributed among these distances:
208 8 0.02
209 243 0.61
210 49 0.12
212 1 0.00
215 1 0.00
216 97 0.24
ACGTcount: A:0.50, C:0.08, G:0.12, T:0.30
Consensus pattern (210 bp):
TAAGTAATAAGTATGGGTCAATTTCAGATGCAAATAAAATTTGGAGGACTAAATTGAACAAATAT
GAAATTACAAAAAAAAATTTAAATATATTAAACAACACAAAAGGGATCAAATCGAAATAATTTTA
AATTTTGAGGTTGAAATTAATACAAAAAAGTACTAAATTATACCCATTTAAAAAGTTATGGGCCA
ATTTAAAAATAGAAA
Found at i:758639 original size:2 final size:2
Alignment explanation
Indices: 758634--758688 Score: 67
Period size: 2 Copynumber: 27.0 Consensus size: 2
758624 ATTAAAATAG
*
758634 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT AA ACT AT AT AGT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT A-T
*
758677 TT AT AT AT AT AT
1 AT AT AT AT AT AT
758689 TATGTATAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
1 1 0.02
2 43 0.93
3 2 0.04
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (2 bp):
AT
Found at i:758710 original size:27 final size:28
Alignment explanation
Indices: 758679--758740 Score: 81
Period size: 27 Copynumber: 2.2 Consensus size: 28
758669 TATATAGTTT
** *
758679 ATATATATATTATGTATAAAGTATAA-A
1 ATATATATACCATGTATAAACTATAATA
*
758706 CTATATATACCATGTATAAACTATAATA
1 ATATATATACCATGTATAAACTATAATA
758734 ATATATA
1 ATATATA
758741 GTTTATATAT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 22 0.76
28 7 0.24
ACGTcount: A:0.50, C:0.06, G:0.05, T:0.39
Consensus pattern (28 bp):
ATATATATACCATGTATAAACTATAATA
Found at i:758796 original size:11 final size:11
Alignment explanation
Indices: 758782--758898 Score: 62
Period size: 11 Copynumber: 10.5 Consensus size: 11
758772 ACTACATAGT
758782 TTATATATAAA
1 TTATATATAAA
*
758793 TTATATATGAA
1 TTATATATAAA
758804 TTATATATAAA
1 TTATATATAAA
* * *
758815 --CTATACAAT
1 TTATATATAAA
*
758824 TTATATTTATATA
1 TTATA--TATAAA
*
758837 TTATGTAT-AA
1 TTATATATAAA
*
758847 TTATAAATAATA
1 TTATATATAA-A
*
758859 TATATTGTATAAA
1 T-TA-TATATAAA
**
758872 TTATATAGTTTA
1 TTATATA-TAAA
758884 TTA-ATATAAA
1 TTATATATAAA
758894 TTATA
1 TTATA
758899 AAGTTTATAT
Statistics
Matches: 76, Mismatches: 20, Indels: 20
0.66 0.17 0.17
Matches are distributed among these distances:
9 6 0.08
10 12 0.16
11 33 0.43
12 9 0.12
13 11 0.14
14 5 0.07
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.48
Consensus pattern (11 bp):
TTATATATAAA
Found at i:758827 original size:42 final size:43
Alignment explanation
Indices: 758758--758856 Score: 103
Period size: 42 Copynumber: 2.3 Consensus size: 43
758748 TATGAACTAT
* * * *
758758 TGAACTATATAGAAACTACATAGTTTATA-TATAAATTATATA
1 TGAATTATATATAAACTACACAATTTATATTATAAATTATATA
* * *
758800 TGAATTATATATAAACTATACAATTTATATTTATATATTATGTA
1 TGAATTATATATAAACTACACAATTTATA-TTATAAATTATATA
*
758844 T-AATTATAAATAA
1 TGAATTATATATAA
758857 TATATATTGT
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
42 24 0.51
43 11 0.23
44 12 0.26
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.42
Consensus pattern (43 bp):
TGAATTATATATAAACTACACAATTTATATTATAAATTATATA
Found at i:758845 original size:17 final size:17
Alignment explanation
Indices: 758825--758878 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
758815 CTATACAATT
* *
758825 TATATTTATATATTATG
1 TATATTTATAAATTATA
* *
758842 TATAATTATAAATAATA
1 TATATTTATAAATTATA
758859 TATATTGTATAAATTATA
1 TATATT-TATAAATTATA
758877 TA
1 TA
758879 GTTTATTAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
17 18 0.60
18 12 0.40
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (17 bp):
TATATTTATAAATTATA
Found at i:758980 original size:20 final size:20
Alignment explanation
Indices: 758955--759027 Score: 83
Period size: 20 Copynumber: 3.4 Consensus size: 20
758945 TATAAACTAC
758955 ATACTATAATTTATATTTAT
1 ATACTATAATTTATATTTAT
*
758975 ATACTATATTGTATACTATTTAT
1 ATACTATAAT-T-TA-TATTTAT
*
758998 ATAAACTATAGTTTATATTTAT
1 AT--ACTATAATTTATATTTAT
759020 ATACTATA
1 ATACTATA
759028 TATATTAACT
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
20 15 0.33
21 1 0.02
22 11 0.24
23 11 0.24
24 1 0.02
25 7 0.15
ACGTcount: A:0.40, C:0.07, G:0.03, T:0.51
Consensus pattern (20 bp):
ATACTATAATTTATATTTAT
Found at i:758989 original size:27 final size:29
Alignment explanation
Indices: 758935--758999 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 29
758925 TGGTTTAGGG
758935 TTTATATTTATATAAACTACATACTATA-A
1 TTTATATTTATAT-AACTACATACTATACA
* **
758964 TTTATATTTATAT-ACTATATTGTATACTA
1 TTTATATTTATATAACTACATACTATAC-A
758993 TTTATAT
1 TTTATAT
759000 AAACTATAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
27 10 0.32
29 21 0.68
ACGTcount: A:0.38, C:0.08, G:0.02, T:0.52
Consensus pattern (29 bp):
TTTATATTTATATAACTACATACTATACA
Found at i:758998 original size:23 final size:21
Alignment explanation
Indices: 758966--759028 Score: 74
Period size: 23 Copynumber: 2.9 Consensus size: 21
758956 TACTATAATT
758966 TATATTTATATACTATATTGTA
1 TATATTTATATACTATA-TGTA
*
758988 TACTATTTATATAAACTATA-GTT
1 TA-TATTTATAT--ACTATATGTA
759011 TATATTTATATACTATAT
1 TATATTTATATACTATAT
759029 ATATTAACTA
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
20 6 0.17
22 11 0.31
23 13 0.36
25 6 0.17
ACGTcount: A:0.38, C:0.06, G:0.03, T:0.52
Consensus pattern (21 bp):
TATATTTATATACTATATGTA
Found at i:759131 original size:38 final size:38
Alignment explanation
Indices: 759089--759372 Score: 280
Period size: 38 Copynumber: 7.4 Consensus size: 38
759079 AAGGTTGATA
759089 TTTATATATGAACTATAGTTTACATATAAACTATATAG
1 TTTATATATGAACTATAGTTTACATATAAACTATATAG
* * *
759127 TTTATATATGAACTATAGTTTATATATAAAGTATAAAG
1 TTTATATATGAACTATAGTTTACATATAAACTATATAG
759165 TTTATATACT-AACTATAGTTTACATATAAACTATATAG
1 TTTATATA-TGAACTATAGTTTACATATAAACTATATAG
*
759203 TTTATATACT-AACTATAGTTTACATATAAACTATAATTAATA
1 TTTATATA-TGAACTATAGTTTACATATAAACTAT-A-T-A-G
*
759245 TTTACATATGAACTATAGTTTACATAT-AA-TATATA-
1 TTTATATATGAACTATAGTTTACATATAAACTATATAG
* * * *
759280 TATATATATAAACTATATAGTTTACATATGACCTATATA-
1 TTTATATATGAAC--TATAGTTTACATATAAACTATATAG
* ** *
759319 TATATATAT--ACTATAGTTGATATTTATATACTATATAG
1 TTTATATATGAACTATAGTT--TACATATAAACTATATAG
* *
759357 -TTACATATGACCTATA
1 TTTATATATGAACTATA
759373 TATATATACT
Statistics
Matches: 211, Mismatches: 20, Indels: 29
0.81 0.08 0.11
Matches are distributed among these distances:
35 17 0.08
37 35 0.17
38 104 0.49
39 23 0.11
40 4 0.02
41 4 0.02
42 24 0.11
ACGTcount: A:0.43, C:0.08, G:0.06, T:0.43
Consensus pattern (38 bp):
TTTATATATGAACTATAGTTTACATATAAACTATATAG
Found at i:759151 original size:76 final size:73
Alignment explanation
Indices: 759071--759400 Score: 255
Period size: 76 Copynumber: 4.3 Consensus size: 73
759061 TATAAATATA
759071 TATATACTAAGGTTGATATTTATATATGAACTATAGTTTACATATAAACTATATAGTTTATATAT
1 TATATACTAA-GTT-ATATTTATATATGAACTATAGTTTACATATAAACTATATAGTTTATATAT
759136 GAACTATAGTT
64 -AACTATAGTT
*
759147 TATATA-TAAAGTATAAAGTTTATATACT-AACTATAGTTTACATATAAACTATATAGTTTATAT
1 TATATACT-AAGT-TATA-TTTATATA-TGAACTATAGTTTACATATAAACTATATAGTTTATAT
759210 ACTAACTATAGTT
62 A-TAACTATAGTT
* * *
759223 TACATATAAACTATAATTAATATTTACATATGAACTATAGTTTACATAT-AA-TATATA-TATAT
1 T--ATAT--ACTA-AGTT-ATATTTATATATGAACTATAGTTTACATATAAACTATATAGTTTAT
759285 ATATAAACTATATAGTT
60 ATAT-AAC--TATAGTT
* * ** * ** * *
759302 TACATA-TGACCTATATATATATAT-ATACTATAGTTGATATTTATATACTATATAG-TTACATA
1 TATATACTAAGTTATATTTATATATGA-ACTATAGTT--TACATATAAACTATATAGTTTATATA
* *
759364 TGACCTATA-TA
63 T-AACTATAGTT
759375 TATATACTATAGTATATATTTATATA
1 TATATACTA-AGT-TATATTTATATA
759401 ATATATATTA
Statistics
Matches: 205, Mismatches: 24, Indels: 50
0.73 0.09 0.18
Matches are distributed among these distances:
71 1 0.00
72 19 0.09
73 8 0.04
74 11 0.05
75 8 0.04
76 90 0.44
77 15 0.07
78 10 0.05
79 11 0.05
80 27 0.13
81 5 0.02
ACGTcount: A:0.42, C:0.08, G:0.07, T:0.43
Consensus pattern (73 bp):
TATATACTAAGTTATATTTATATATGAACTATAGTTTACATATAAACTATATAGTTTATATATAA
CTATAGTT
Found at i:759280 original size:2 final size:2
Alignment explanation
Indices: 759268--759441 Score: 79
Period size: 2 Copynumber: 82.5 Consensus size: 2
759258 TATAGTTTAC
* * * *
759268 AT AT A- AT AT AT AT AT AT AT AT AA ACT AT AT AGT TT AC AT AT GAC
1 AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT A-T AT AT AT AT -AT
* *
759312 CT AT AT AT AT AT AT AT ACT AT AGT -T GAT AT TT AT AT ACT AT AT
1 AT AT AT AT AT AT AT AT A-T AT A-T AT -AT AT AT AT AT A-T AT AT
* * * *
759355 AGT -T AC AT AT GAC CT AT AT AT AT AT ACT AT AGT AT AT AT TT AT
1 A-T AT AT AT AT -AT AT AT AT AT AT AT A-T AT A-T AT AT AT AT AT
* *
759398 AT A- AT AT AT AT -T AT AT AT AT AA ACT AT AA AT ACT AT AT AGT
1 AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT A-T AT AT A-T
759439 AT A
1 AT A
759442 ATTTAAATAT
Statistics
Matches: 129, Mismatches: 24, Indels: 38
0.68 0.13 0.20
Matches are distributed among these distances:
1 5 0.04
2 104 0.81
3 20 0.16
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.44
Consensus pattern (2 bp):
AT
Found at i:759308 original size:37 final size:37
Alignment explanation
Indices: 759258--759333 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
759248 ACATATGAAC
*
759258 TATAGTTTACATATAATATATATATATATATAAACTA
1 TATAGTTTACATATAACATATATATATATATAAACTA
* * *
759295 TATAGTTTACATATGACCTATATATATATATATACTA
1 TATAGTTTACATATAACATATATATATATATAAACTA
759332 TA
1 TA
759334 GTTGATATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.45, C:0.08, G:0.04, T:0.43
Consensus pattern (37 bp):
TATAGTTTACATATAACATATATATATATATAAACTA
Found at i:759315 original size:20 final size:20
Alignment explanation
Indices: 759102--759318 Score: 172
Period size: 20 Copynumber: 11.2 Consensus size: 20
759092 ATATATGAAC
759102 TATAGTTTACATATAAACTA
1 TATAGTTTACATATAAACTA
* *
759122 TATAGTTTATATATGAAC--
1 TATAGTTTACATATAAACTA
* *
759140 TATAGTTTATATATAAAGTA
1 TATAGTTTACATATAAACTA
* *
759160 TAAAGTTTATATACT-AAC--
1 TATAGTTTACATA-TAAACTA
759178 TATAGTTTACATATAAACTA
1 TATAGTTTACATATAAACTA
*
759198 TATAGTTTATATACT-AAC--
1 TATAGTTTACATA-TAAACTA
759216 TATAGTTTACATATAAACTA
1 TATAGTTTACATATAAACTA
* *
759236 TAATTAATATTTACATATGAAC--
1 T-A-T-A-GTTTACATATAAACTA
759258 TATAGTTTACATAT-AA-TA
1 TATAGTTTACATATAAACTA
* *
759276 TATA-TATATATATAAACTA
1 TATAGTTTACATATAAACTA
* *
759295 TATAGTTTACATATGACCTA
1 TATAGTTTACATATAAACTA
759315 TATA
1 TATA
759319 TATATATATA
Statistics
Matches: 159, Mismatches: 19, Indels: 38
0.74 0.09 0.18
Matches are distributed among these distances:
17 11 0.07
18 60 0.38
19 7 0.04
20 62 0.39
21 4 0.03
22 2 0.01
23 1 0.01
24 12 0.08
ACGTcount: A:0.44, C:0.08, G:0.06, T:0.42
Consensus pattern (20 bp):
TATAGTTTACATATAAACTA
Found at i:759716 original size:51 final size:51
Alignment explanation
Indices: 759632--760549 Score: 530
Period size: 51 Copynumber: 17.8 Consensus size: 51
759622 AACTATACAT
759632 TATATA-TATATA--TCATTAGTATATATAAACTATATAGTATATGTAAAC
1 TATATATTATATAGTTCATTAGTATATATAAACTATATAGTATATGTAAAC
*
759680 TATATATTATATAGTTCATTAGTATATATAACCTATATAGTATATGGAATATACAAAC
1 TATATATTATATAGTTCATTAGTATATATAAACTATATAGTATAT-G----T--AAAC
* *
759738 TATATATTATATAGTTCATTACTATATA-AAACTATATAGTATATATAAAC
1 TATATATTATATAGTTCATTAGTATATATAAACTATATAGTATATGTAAAC
** ** * * *
759788 TATATGGTATATA-TAAACTATA-TATTATATATA-TTTCATTAGTATATATAAAC
1 TATATATTATATAGTTCA-T-TAGTA-TATATAAACTAT-A-TAGTATATGTAAAC
759841 TATATATTATATAGTTCATTAGTATATATAAACTATATAGTATATGTAAAC
1 TATATATTATATAGTTCATTAGTATATATAAACTATATAGTATATGTAAAC
* * **
759892 TATATATTATATAGTTCATTAGTATATAACCTATATAGTATATGGTATATACAAAC
1 TATATATTATATAGTTCATTAGTATAT-A--TA-A-ACTATATAGTATATGTAAAC
* * * *
759948 TATATATTATATAGTTCATTACTATATATAACCTATATAATATATATAAAC
1 TATATATTATATAGTTCATTAGTATATATAAACTATATAGTATATGTAAAC
* * * *
759999 TATATGGTATATATAAACTATACATTA-TATATAT--TC-AT-TAGTATATATAAAC
1 TATA---TAT-TATATAGT-T-CATTAGTATATATAAACTATATAGTATATGTAAAC
* * * *
760051 TATATAGTATAT-G--CA-AACTATATAT----TATATAGT-TCAT-TAGTA-
1 TATATATTATATAGTTCATTAGTATATATAAACTATATAGTAT-ATGTA-AAC
* * * * ** *
760093 TATATAACCTATATAG-T-ATATGGTATATACAAACTATATATTATATAGTTCAT
1 TATAT-A-TTATATAGTTCAT-TAGTATATATAAACTATATAGTATAT-GTAAAC
** * * *
760146 TACTATA-TATA-ACCT-ATATAGTATATATAAACTATATATTATATATATTTCAC
1 TA-TATATTATATAGTTCAT-TAGTATATATAAACTATATAGTATATGTA---AAC
** * * *
760199 TAGTATA-TATA-AACT-A-TA-TAT-TATATAGT-TCACTAGTATATATAAAC
1 TA-TATATTATATAGTTCATTAGTATATATAAACTAT-A-TAGTATATGTAAAC
* * * * *
760246 TATATATTATATAGTTAATTACTATATATAACCTATATAATATATATAAAC
1 TATATATTATATAGTTCATTAGTATATATAAACTATATAGTATATGTAAAC
* * ** *
760297 TATATGGTATATATAAACTATACATTA-TATATAT-TTC-AT-TAGTATATATAAAC
1 TATA---TAT-TATATAGT-T-CATTAGTATATATAAACTATATAGTATATGTAAAC
*
760350 TATATATTATATAGTTCATTAGTATATATAAACTATATAGTATATGCAAAC
1 TATATATTATATAGTTCATTAGTATATATAAACTATATAGTATATGTAAAC
*
760401 TATATATTATATAGTTCATTAGTATATATAACCTATATAGTATATGGTATATACAAAC
1 TATATATTATATAGTTCATTAGTATATATAAACTATATAGTATAT-G----T--AAAC
* * * *
760459 TATATATTATATAGTTCATTACTATATATAACCCATATAGTATATATAAAC
1 TATATATTATATAGTTCATTAGTATATATAAACTATATAGTATATGTAAAC
* * *
760510 TATATATTGA-AAAGTTCATTAATATATTATAACCTATATA
1 TATATATT-ATATAGTTCATTAGTATA-TATAAACTATATA
760550 TTAATTTATT
Statistics
Matches: 706, Mismatches: 82, Indels: 160
0.74 0.09 0.17
Matches are distributed among these distances:
42 11 0.02
43 17 0.02
44 5 0.01
45 2 0.00
46 4 0.01
47 19 0.03
48 21 0.03
49 25 0.04
50 40 0.06
51 241 0.34
52 56 0.08
53 73 0.10
54 16 0.02
55 15 0.02
56 59 0.08
57 24 0.03
58 78 0.11
ACGTcount: A:0.44, C:0.08, G:0.06, T:0.42
Consensus pattern (51 bp):
TATATATTATATAGTTCATTAGTATATATAAACTATATAGTATATGTAAAC
Found at i:759884 original size:179 final size:179
Alignment explanation
Indices: 759794--760515 Score: 481
Period size: 177 Copynumber: 4.0 Consensus size: 179
759784 AAACTATATG
759794 GTATATATAAACTATATATTATATATATTTCATTAGTATATATAAACTATATATTATATAGTTCA
1 GTATATATAAACTATATATTATATATATTTCATTAGTATATATAAACTATATATTATATAGTTCA
* * * * *
759859 TTAGTATATATAAACTATATAGTATATGTAAACTATATATTATAT-AGT-T-CATTAGTATATAA
66 CTAGTATATATAAACTATATAGTATATATAAACTATATATTATATGAATATACATAACTATAT-A
* ** * **
759921 CCTATATAG-TATATGGTATATACAAACTATATA-TTATAT-AGTTCAT-TA
130 -TTATATAGTTATATACTATATATAAACTATATAGTTATATAAACT-ATATA
* * * ** * * *
759969 CTATATATAACCTATATAATATATATA-AACTATATGGTATATATAAACTATACATTATATATAT
1 GTATATATAAACTATATATTATATATATTTC-AT-TAGTATATATAAACTATATATTATATA-GT
* ** *
760033 TCATTAGTATATATAAACTATATAGTATATGCAAACTATATATTATATAGTTCATTAGTATATAT
63 TCACTAGTATATATAAACTATATAGTATATATAAACTATATATTATAT-G---A--A-TATACAT
* * * * * *
760098 AACCTATATAGTATATGGTATATACAAACTATATATTATA-TAGTTCATTACTATATATAACCTA
121 AA-CTATATATTATATAGT-TAT--ATACTATATA-TAAACTA--T-A-TAGT-TATATAAACTA
760162 TATA
176 TATA
*
760166 GTATATATAAACTATATATTATATATATTTCACTAGTATATATAAACTATATATTATATAGTTCA
1 GTATATATAAACTATATATTATATATATTTCATTAGTATATATAAACTATATATTATATAGTTCA
* * ** *
760231 CTAGTATATATAAACTATATATTATATAGTTAA-T-TACTA-TATAT-AACCTATATAA-TATAT
66 CTAGTATATATAAACTATATAGTATATA-TAAACTATA-TATTATATGAATATACATAACTATAT
* ** * * *
760291 A-TA-A-A-CTATATGGTATATATAAACTATACA-TTATATATA-TTTCATTA
129 ATTATATAGTTATATACTATATATAAACTATATAGTTATATAAACTAT-A-TA
* * ***
760338 GTATATATAAACTATATA-T-TATATAGTTCATTAGTATATATAAACTATATAGTATAT-GCAAA
1 GTATATATAAACTATATATTATATATATTTCATTAGTATATATAAACTATATATTATATAGTTCA
* * * * *
760400 CTA-TATATTATATAGT-TCATTAGTATATATAACCTATATAGTATATGGTATATACA-AACTAT
66 CTAGTATA-TATAAACTAT-A-TAGTATATATAAACTATATATTATAT-GAATATACATAACTAT
* *
760462 ATATTATATAGTTCAT-TACTATATATAACCCATATAGTATATATAAACTATATA
127 ATATTATATAGTT-ATATACTATATATAAACTATATAGT-TATATAAACTATATA
760516 TTGAAAAGTT
Statistics
Matches: 426, Mismatches: 71, Indels: 97
0.72 0.12 0.16
Matches are distributed among these distances:
168 5 0.01
169 14 0.03
170 48 0.11
171 15 0.04
172 23 0.05
173 11 0.03
174 4 0.01
175 28 0.07
176 29 0.07
177 73 0.17
178 5 0.01
179 11 0.03
180 2 0.00
182 2 0.00
183 2 0.00
184 6 0.01
185 1 0.00
186 14 0.03
187 5 0.01
188 8 0.02
189 1 0.00
190 9 0.02
191 2 0.00
192 1 0.00
193 1 0.00
194 9 0.02
195 33 0.08
196 34 0.08
197 29 0.07
198 1 0.00
ACGTcount: A:0.43, C:0.08, G:0.06, T:0.42
Consensus pattern (179 bp):
GTATATATAAACTATATATTATATATATTTCATTAGTATATATAAACTATATATTATATAGTTCA
CTAGTATATATAAACTATATAGTATATATAAACTATATATTATATGAATATACATAACTATATAT
TATATAGTTATATACTATATATAAACTATATAGTTATATAAACTATATA
Found at i:760105 original size:33 final size:33
Alignment explanation
Indices: 760055--760394 Score: 285
Period size: 33 Copynumber: 10.8 Consensus size: 33
760045 ATAAACTATA
**
760055 TAGTATATGCAAACTATATATTATATAGTTCAT
1 TAGTATATATAAACTATATATTATATAGTTCAT
* *
760088 TAGTATATATAACCTATATAGTATAT-G-----
1 TAGTATATATAAACTATATATTATATAGTTCAT
*
760115 --GTATATACAAACTATATATTATATAGTTCAT
1 TAGTATATATAAACTATATATTATATAGTTCAT
* * *
760146 TACTATATATAACCTATATAGTATATA--T-A-
1 TAGTATATATAAACTATATATTATATAGTTCAT
*
760175 -A--ACTATAT--A-T-TATA-TATAT--TTCAC
1 TAGTA-TATATAAACTATATATTATATAGTTCAT
*
760199 TAGTATATATAAACTATATATTATATAGTTCAC
1 TAGTATATATAAACTATATATTATATAGTTCAT
*
760232 TAGTATATATAAACTATATATTATATAGTTAAT
1 TAGTATATATAAACTATATATTATATAGTTCAT
* * **
760265 TACTATATATAACCTATATAATATATATA-AACTAT
1 TAGTATATATAAACTATAT-AT-TATATAGTTC-AT
* * *
760300 ATGGTATATATAAACTATACATTATATATATTTCAT
1 -TAGTATATATAAACTATATA-T-TATATAGTTCAT
760336 TAGTATATATAAACTATATATTATATAGTTCAT
1 TAGTATATATAAACTATATATTATATAGTTCAT
*
760369 TAGTATATATAAACTATATAGTATAT
1 TAGTATATATAAACTATATATTATAT
760395 GCAAACTATA
Statistics
Matches: 250, Mismatches: 29, Indels: 56
0.75 0.09 0.17
Matches are distributed among these distances:
22 6 0.02
23 5 0.02
24 1 0.00
25 22 0.09
26 7 0.03
27 6 0.02
28 2 0.01
29 1 0.00
30 5 0.02
31 6 0.02
32 1 0.00
33 132 0.53
34 3 0.01
35 27 0.11
36 25 0.10
37 1 0.00
ACGTcount: A:0.43, C:0.08, G:0.06, T:0.43
Consensus pattern (33 bp):
TAGTATATATAAACTATATATTATATAGTTCAT
Found at i:760139 original size:9 final size:10
Alignment explanation
Indices: 760125--760331 Score: 60
Period size: 9 Copynumber: 20.0 Consensus size: 10
760115 GTATATACAA
760125 ACTATATATT
1 ACTATATATT
760135 A-TATAGTTCATT
1 ACTATA--T-ATT
*
760147 ACTATATATA
1 ACTATATATT
*
760157 ACCTATATAGT
1 A-CTATATATT
*
760168 A-TATATA-A
1 ACTATATATT
760176 ACTATATATT
1 ACTATATATT
760186 A-TATATATTT
1 ACTATATA-TT
760196 CACTAGTATATAT
1 -ACTA-TATAT-T
760209 AAACTATATATT
1 --ACTATATATT
*
760221 A-TATAGT-TC
1 ACTATA-TATT
760230 ACTAGTATATAT
1 ACTA-TATAT-T
760242 AAACTATATATT
1 --ACTATATATT
760254 A-TATAGTTAATT
1 ACTATA--T-ATT
*
760266 ACTATATATA
1 ACTATATATT
*
760276 ACCTATATAAT
1 A-CTATATATT
*
760287 A-TATATA-A
1 ACTATATATT
**
760295 ACTATATGGT
1 ACTATATATT
*
760305 A-TATATA-A
1 ACTATATATT
*
760313 ACTATACATT
1 ACTATATATT
760323 A-TATATATT
1 ACTATATATT
760332 TCATTAGTAT
Statistics
Matches: 149, Mismatches: 19, Indels: 59
0.66 0.08 0.26
Matches are distributed among these distances:
8 3 0.02
9 60 0.40
10 18 0.12
11 24 0.16
12 13 0.09
13 23 0.15
14 8 0.05
ACGTcount: A:0.44, C:0.09, G:0.04, T:0.43
Consensus pattern (10 bp):
ACTATATATT
Found at i:760424 original size:33 final size:33
Alignment explanation
Indices: 760387--760504 Score: 99
Period size: 33 Copynumber: 3.8 Consensus size: 33
760377 ATAAACTATA
*
760387 TAGTATATGCAAACTATATATTATATAGTTCAT
1 TAGTATATACAAACTATATATTATATAGTTCAT
* * *
760420 TAGTATATATAACCTATATAGTATAT-G-----
1 TAGTATATACAAACTATATATTATATAGTTCAT
760447 --GTATATACAAACTATATATTATATAGTTCAT
1 TAGTATATACAAACTATATATTATATAGTTCAT
* * * * *
760478 TACTATATATAACCCATATAGTATATA
1 TAGTATATACAAACTATATATTATATA
760505 TAAACTATAT
Statistics
Matches: 65, Mismatches: 12, Indels: 16
0.70 0.13 0.17
Matches are distributed among these distances:
25 21 0.32
26 1 0.02
32 1 0.02
33 42 0.65
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.41
Consensus pattern (33 bp):
TAGTATATACAAACTATATATTATATAGTTCAT
Found at i:760461 original size:25 final size:25
Alignment explanation
Indices: 760422--760470 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
760412 TAGTTCATTA
* *
760422 GTATATATAACCTATATAGTATATG
1 GTATATACAAACTATATAGTATATG
*
760447 GTATATACAAACTATATATTATAT
1 GTATATACAAACTATATAGTATAT
760471 AGTTCATTAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.41
Consensus pattern (25 bp):
GTATATACAAACTATATAGTATATG
Found at i:760515 original size:18 final size:18
Alignment explanation
Indices: 759112--760445 Score: 463
Period size: 18 Copynumber: 75.1 Consensus size: 18
759102 TATAGTTTAC
759112 ATATAAACTATATAGTTTAT
1 ATATAAACTATATAG--TAT
* *
759132 ATATGAACTATAGT-TTAT
1 ATATAAACTATA-TAGTAT
* * *
759150 ATATAAAGTATAAAGTTT
1 ATATAAACTATATAGTAT
* *
759168 ATATACTAACTATAGT-TTAC
1 ATATA--AACTATA-TAGTAT
*
759188 ATATAAACTATATAGTTT
1 ATATAAACTATATAGTAT
* *
759206 ATATACTAACTATAGT-TTAC
1 ATATA--AACTATA-TAGTAT
*
759226 ATATAAACTATAATTAATATTT
1 ATATAAACTAT-A-TAGTA--T
* * *
759248 ACATATGAACTATAGT-TTAC
1 --ATATAAACTATA-TAGTAT
759268 ATATAATA-TATATA-TAT
1 ATATAA-ACTATATAGTAT
*
759285 ATATAAACTATATAGTTTAC
1 ATATAAACTATATAG--TAT
* *
759305 ATATGACCTATATA-TAT
1 ATATAAACTATATAGTAT
* *
759322 ATATATACTATAGTTGATAT
1 ATATAAACTATA-TAG-TAT
* * *
759342 TTATATACTATATAGTTAC
1 ATATAAACTATATAG-TAT
* *
759361 ATATGACCTATATA-TAT
1 ATATAAACTATATAGTAT
* * *
759378 ATACTATAGTATATA-TTT
1 ATA-TAAACTATATAGTAT
759396 ATAT-AA-TATATA-T-T
1 ATATAAACTATATAGTAT
* *
759410 ATAT--A-TATAAACTAT
1 ATATAAACTATATAGTAT
*
759425 A-A-ATACTATATAGTAT
1 ATATAAACTATATAGTAT
*
759441 AATTTAAA-TATGAACTA-TAT
1 -ATATAAACTAT--A-TAGTAT
* *
759461 ATAAAAACCATATA--A-
1 ATATAAACTATATAGTAT
* *
759476 ACTATATACTATAGTTGATAT
1 A-TATAAACTATA-TAG-TAT
* * **
759497 TTATATACTATATAAAAT
1 ATATAAACTATATAGTAT
**
759515 A-ATTTA-TACTATAGTAT
1 ATATAAACTA-TATAGTAT
*
759532 ATATAAACTATATAATAT
1 ATATAAACTATATAGTAT
* *
759550 ATACAAACTATATATTAT
1 ATATAAACTATATAGTAT
*** *
759568 AT-TGTTC-AT-TACTAT
1 ATATAAACTATATAGTAT
*
759583 ATATAACCTATATAG--T
1 ATATAAACTATATAGTAT
*
759599 ATATAAACTATATGGTAT
1 ATATAAACTATATAGTAT
* *
759617 ATATAAACTATACATTAT
1 ATATAAACTATATAGTAT
*
759635 ATATATA-TATCATTAGTAT
1 ATATAAACTAT-A-TAGTAT
759654 ATATAAACTATATAGTAT
1 ATATAAACTATATAGTAT
*
759672 ATGTAAACTATATA-T-T
1 ATATAAACTATATAGTAT
**
759688 ATAT-AGTTCAT-TAGTAT
1 ATATAAACT-ATATAGTAT
*
759705 ATATAACCTATATAGTATAT
1 ATATAAACTATATAG--TAT
759725 GGAATATACAAACTATATA-T-T
1 ---ATAT--AAACTATATAGTAT
** *
759746 ATAT-AGTTCAT-TACTAT
1 ATATAAACT-ATATAGTAT
759763 ATA-AAACTATATAGTAT
1 ATATAAACTATATAGTAT
*
759780 ATATAAACTATATGGTAT
1 ATATAAACTATATAGTAT
*
759798 ATATAAACTATATATTAT
1 ATATAAACTATATAGTAT
**
759816 ATAT-ATTTCAT-TAGTAT
1 ATATAAACT-ATATAGTAT
759833 ATATAAACTATATA-T-T
1 ATATAAACTATATAGTAT
**
759849 ATAT-AGTTCAT-TAGTAT
1 ATATAAACT-ATATAGTAT
759866 ATATAAACTATATAGTAT
1 ATATAAACTATATAGTAT
* *
759884 ATGTAAACTATATATTAT
1 ATATAAACTATATAGTAT
** *
759902 ATAGTTCATTAGTATA-TA-
1 ATA-TAAACTA-TATAGTAT
* * *
759920 ACCTATATAGTATATGGTAT
1 A--TATAAACTATATAGTAT
*
759940 ATACAAACTATATA-T-T
1 ATATAAACTATATAGTAT
** *
759956 ATAT-AGTTCAT-TACTAT
1 ATATAAACT-ATATAGTAT
* *
759973 ATATAACCTATATAATAT
1 ATATAAACTATATAGTAT
*
759991 ATATAAACTATATGGTAT
1 ATATAAACTATATAGTAT
* *
760009 ATATAAACTATACATTAT
1 ATATAAACTATATAGTAT
**
760027 ATATATTC-AT-TAGTAT
1 ATATAAACTATATAGTAT
760043 ATATAAACTATATAGTAT
1 ATATAAACTATATAGTAT
** *
760061 ATGCAAACTATATATTAT
1 ATATAAACTATATAGTAT
** *
760079 ATAGTTCATTAGTATA-TAT
1 ATA-TAAACTA-TATAGTAT
* * *
760098 AACCTATATAGTATATGGTAT
1 -A--TATAAACTATATAGTAT
*
760119 ATACAAACTATATA-T-T
1 ATATAAACTATATAGTAT
** *
760135 ATAT-AGTTCAT-TACTAT
1 ATATAAACT-ATATAGTAT
*
760152 ATATAACCTATATAGTAT
1 ATATAAACTATATAGTAT
760170 ATATAAACTATATA-T-T
1 ATATAAACTATATAGTAT
* *
760186 ATATATA-TTTCACTAGTAT
1 ATATAAACTAT-A-TAGTAT
760205 ATATAAACTATATA-T-T
1 ATATAAACTATATAGTAT
*
760221 ATAT--AGT-TCACTAGTAT
1 ATATAAACTAT-A-TAGTAT
760238 ATATAAACTATATA-T-T
1 ATATAAACTATATAGTAT
** *
760254 ATAT-AGTTA-ATTACTAT
1 ATATAAACTATA-TAGTAT
* *
760271 ATATAACCTATATAATAT
1 ATATAAACTATATAGTAT
*
760289 ATATAAACTATATGGTAT
1 ATATAAACTATATAGTAT
* *
760307 ATATAAACTATACATTAT
1 ATATAAACTATATAGTAT
**
760325 ATAT-ATTTCAT-TAGTAT
1 ATATAAACT-ATATAGTAT
760342 ATATAAACTATATA-T-T
1 ATATAAACTATATAGTAT
**
760358 ATAT-AGTTCAT-TAGTAT
1 ATATAAACT-ATATAGTAT
760375 ATATAAACTATATAGTAT
1 ATATAAACTATATAGTAT
**
760393 ATGCAAACTATATA-T-T
1 ATATAAACTATATAGTAT
**
760409 ATAT-AGTTCAT-TAGTAT
1 ATATAAACT-ATATAGTAT
*
760426 ATATAACCTATATAGTAT
1 ATATAAACTATATAGTAT
760444 AT
1 AT
760446 GGTATATACA
Statistics
Matches: 973, Mismatches: 207, Indels: 270
0.67 0.14 0.19
Matches are distributed among these distances:
13 7 0.01
14 11 0.01
15 55 0.06
16 117 0.12
17 160 0.16
18 404 0.42
19 68 0.07
20 109 0.11
21 12 0.01
22 5 0.01
23 6 0.01
24 10 0.01
25 9 0.01
ACGTcount: A:0.44, C:0.08, G:0.06, T:0.42
Consensus pattern (18 bp):
ATATAAACTATATAGTAT
Found at i:760749 original size:61 final size:60
Alignment explanation
Indices: 760609--760749 Score: 165
Period size: 61 Copynumber: 2.3 Consensus size: 60
760599 TATAAGGATC
* *
760609 AAATTGAACAAATTTTAAATATGAAGCTTAAACTAATAAACTGTAATATTAAAATTGGACA
1 AAATTGAAC-AATTTAAAATATGAAGCTTAAACTAATAAACTGCAATATTAAAATTGGACA
* * * * * * *
760670 AAATTGAAACAATTTAAAATTTGAAGCTTAAATTAATATATTGCATTATTAAAGTTGGACT
1 AAATTG-AACAATTTAAAATATGAAGCTTAAACTAATAAACTGCAATATTAAAATTGGACA
*
760731 AAATTGAACTAATGTAAAA
1 AAATTGAAC-AATTTAAAA
760750 CTAGGATACC
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
60 3 0.04
61 62 0.91
62 3 0.04
ACGTcount: A:0.49, C:0.07, G:0.11, T:0.33
Consensus pattern (60 bp):
AAATTGAACAATTTAAAATATGAAGCTTAAACTAATAAACTGCAATATTAAAATTGGACA
Found at i:761161 original size:111 final size:113
Alignment explanation
Indices: 760947--761277 Score: 456
Period size: 111 Copynumber: 2.9 Consensus size: 113
760937 GAAAATCAAA
* * * * * *
760947 CGTGTTCTTTATTTGTTCATCCAGTTCATCCCCAAAAGCCTCATTTGATCTTCAAAAACACTTCA
1 CGTGTTCTTCATTTGTTCATCCAGTTCTTCCCCAAAACCCTCCTTTGATCTTCAAAAACACCTAA
761012 ACCAAAACATTTTCGTATTTTTTCGATCAAACACCC-AAA-ATTCTTC
66 ACCAAAACATTTTCGTATTTTTTCGATCAAACACCCAAAATATTCTTC
*
761058 CGTGTTCTTCATTTGTTCATCTAGTTCTTCCCCAAAACCCTCCTTTGATCTTCAAAAACACCTAA
1 CGTGTTCTTCATTTGTTCATCCAGTTCTTCCCCAAAACCCTCCTTTGATCTTCAAAAACACCTAA
* * * *
761123 ACCAAAATATTTTTGTGTTTTCTTCGATCAAACA-CCAAAATATTCTTT
66 ACCAAAACATTTTCGTATTTT-TTCGATCAAACACCCAAAATATTCTTC
* *
761171 TGTGTTCTTCATTTGTTCATCCATTTCTTCCCCAAAACCCTCCTTTGATCTTCAAAAACACCTAA
1 CGTGTTCTTCATTTGTTCATCCAGTTCTTCCCCAAAACCCTCCTTTGATCTTCAAAAACACCTAA
* *
761236 A-CAAAACCA-TTTCATGTTTATTTCGATCAAACACCCACAAAT
66 ACCAAAA-CATTTTCGTATTT-TTTCGATCAAACACCCA-AAAT
761278 TCATCAATTT
Statistics
Matches: 196, Mismatches: 17, Indels: 11
0.88 0.08 0.05
Matches are distributed among these distances:
111 78 0.40
112 40 0.20
113 74 0.38
114 4 0.02
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.37
Consensus pattern (113 bp):
CGTGTTCTTCATTTGTTCATCCAGTTCTTCCCCAAAACCCTCCTTTGATCTTCAAAAACACCTAA
ACCAAAACATTTTCGTATTTTTTCGATCAAACACCCAAAATATTCTTC
Found at i:761440 original size:23 final size:23
Alignment explanation
Indices: 761413--761513 Score: 82
Period size: 23 Copynumber: 4.4 Consensus size: 23
761403 TTATTCATCT
761413 ATCCTAACCTAGACCCTAACCAA
1 ATCCTAACCTAGACCCTAACCAA
* *
761436 ATCCTAACC-AGACCCTAGCCCAT
1 ATCCTAACCTAGACCCTA-ACCAA
* * *
761459 ACCCTAA-CTAGACCCTAGCC-C
1 ATCCTAACCTAGACCCTAACCAA
* *
761480 ATACCTTAACCTAAACCCTAACCAG
1 AT-CC-TAACCTAGACCCTAACCAA
*
761505 ACCCTAACC
1 ATCCTAACC
761514 CTAACTAGAC
Statistics
Matches: 62, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
21 1 0.02
22 13 0.21
23 34 0.55
24 13 0.21
25 1 0.02
ACGTcount: A:0.35, C:0.43, G:0.06, T:0.17
Consensus pattern (23 bp):
ATCCTAACCTAGACCCTAACCAA
Found at i:761452 original size:11 final size:11
Alignment explanation
Indices: 761415--761513 Score: 81
Period size: 11 Copynumber: 8.6 Consensus size: 11
761405 ATTCATCTAT
761415 CCTAACCTAGAC
1 CCTAACC-AGAC
* *
761427 CCTAACCAAAT
1 CCTAACCAGAC
761438 CCTAACCAGAC
1 CCTAACCAGAC
* *
761449 CCTAGCCCATAC
1 CCTA-ACCAGAC
*
761461 CCTAACTAGAC
1 CCTAACCAGAC
* *
761472 CCTAGCCCATAC
1 CCTA-ACCAGAC
* *
761484 CTTAACCTAAAC
1 CCTAACC-AGAC
761496 CCTAACCAGAC
1 CCTAACCAGAC
761507 CCTAACC
1 CCTAACC
761514 CTAACTAGAC
Statistics
Matches: 67, Mismatches: 17, Indels: 7
0.74 0.19 0.08
Matches are distributed among these distances:
11 35 0.52
12 32 0.48
ACGTcount: A:0.34, C:0.43, G:0.06, T:0.16
Consensus pattern (11 bp):
CCTAACCAGAC
Found at i:761515 original size:17 final size:17
Alignment explanation
Indices: 761492--761530 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
761482 ACCTTAACCT
761492 AAACCCTAACCAGACCC
1 AAACCCTAACCAGACCC
* *
761509 TAACCCTAACTAGACCC
1 AAACCCTAACCAGACCC
761526 AAACC
1 AAACC
761531 TAAACCCTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.41, C:0.44, G:0.05, T:0.10
Consensus pattern (17 bp):
AAACCCTAACCAGACCC
Found at i:761603 original size:29 final size:29
Alignment explanation
Indices: 761554--761626 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
761544 AATCCTAATT
* **
761554 AGACCTTAAAATATTTGAAACCATAAACC
1 AGACCTTAAACTATTCAAAACCATAAACC
* *
761583 AGACCTTAAACTATTCAAAACCCTAAACT
1 AGACCTTAAACTATTCAAAACCATAAACC
761612 A-ACCTTTAAACTATT
1 AGACC-TTAAACTATT
761627 TAGAACCCTA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
28 3 0.08
29 35 0.92
ACGTcount: A:0.45, C:0.23, G:0.04, T:0.27
Consensus pattern (29 bp):
AGACCTTAAACTATTCAAAACCATAAACC
Found at i:761640 original size:17 final size:17
Alignment explanation
Indices: 761618--761680 Score: 62
Period size: 17 Copynumber: 3.9 Consensus size: 17
761608 AACTAACCTT
* *
761618 TAAACTATTTAGAACCC
1 TAAACTATTCAAAACCC
761635 TAAACTATTCAAAACCC
1 TAAACTATTCAAAACCC
* *
761652 TAAAC----CCAAACCG
1 TAAACTATTCAAAACCC
761665 TAAACTATTCAAAACC
1 TAAACTATTCAAAACC
761681 TTCATTTTTC
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
13 11 0.30
17 26 0.70
ACGTcount: A:0.46, C:0.29, G:0.03, T:0.22
Consensus pattern (17 bp):
TAAACTATTCAAAACCC
Found at i:765342 original size:21 final size:21
Alignment explanation
Indices: 765316--765355 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
765306 CAGGACCCCA
*
765316 GGGGGGTATCGATTCCCCTGT
1 GGGGGGAATCGATTCCCCTGT
*
765337 GGGGGGAATCGGTTCCCCT
1 GGGGGGAATCGATTCCCCT
765356 TCAAAGGGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.25, G:0.40, T:0.25
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCCTGT
Found at i:765390 original size:20 final size:21
Alignment explanation
Indices: 765336--765398 Score: 65
Period size: 20 Copynumber: 2.9 Consensus size: 21
765326 GATTCCCCTG
765336 TGGGGGGAATCGGTTCCCCTTCAA
1 TGGGGGG-ATCGGTT-CCC-TCAA
* *
765360 AGGGGGAATCGGTTCCCTC-A
1 TGGGGGGATCGGTTCCCTCAA
*
765380 TGGGGGGATCGATTCCCTC
1 TGGGGGGATCGGTTCCCTC
765399 TGCACCAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
20 17 0.50
21 2 0.06
22 3 0.09
23 7 0.21
24 5 0.15
ACGTcount: A:0.16, C:0.25, G:0.35, T:0.24
Consensus pattern (21 bp):
TGGGGGGATCGGTTCCCTCAA
Found at i:769253 original size:22 final size:21
Alignment explanation
Indices: 769211--769250 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
769201 GAGTTTGTTT
*
769211 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
769232 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
769251 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:771571 original size:31 final size:30
Alignment explanation
Indices: 771536--771702 Score: 201
Period size: 31 Copynumber: 5.4 Consensus size: 30
771526 TATATATATA
771536 TACTGGTTTATTACTGTTGATGTAAATGATG
1 TACTGGTTTATTA-TGTTGATGTAAATGATG
* *
771567 TACTGGCTTATTGTTGTTGATGTAAATGATG
1 TACTGGTTTATT-ATGTTGATGTAAATGATG
* *
771598 TACTAGTTTATTGTTGTTGATGTAAATGATG
1 TACTGGTTTATT-ATGTTGATGTAAATGATG
* *
771629 TACTGGTTAATTGATGCTT-ATATAAATGATG
1 TACTGGTTTATT-ATG-TTGATGTAAATGATG
* *
771660 TACTGGTTAATTGATGTTTATGTAAATGATG
1 TACTGGTTTATT-ATGTTGATGTAAATGATG
771691 TACTGGTTTATT
1 TACTGGTTTATT
771703 GTTGTAATGT
Statistics
Matches: 123, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
30 2 0.02
31 119 0.97
32 2 0.02
ACGTcount: A:0.26, C:0.05, G:0.22, T:0.46
Consensus pattern (30 bp):
TACTGGTTTATTATGTTGATGTAAATGATG
Found at i:771618 original size:62 final size:60
Alignment explanation
Indices: 771536--771715 Score: 236
Period size: 62 Copynumber: 2.9 Consensus size: 60
771526 TATATATATA
771536 TACTGGTTTATT-ACTGTTGATGTAAATGATGTACTGGCTTATTGTTGTTGATGTAAATGATG
1 TACTGGTTTATTGA-TGTTGATGTAAATGATGTACTGG-TTATTGTTGTT-ATGTAAATGATG
* * * *
771598 TACTAGTTTATTGTTGTTGATGTAAATGATGTACTGGTTAATTGATGCTTATATAAATGATG
1 TACTGGTTTATTGATGTTGATGTAAATGATGTACTGGTT-ATTGTTG-TTATGTAAATGATG
* * *
771660 TACTGGTTAATTGATGTTTATGTAAATGATGTACTGGTTTATTGTTGTAATGTAAA
1 TACTGGTTTATTGATGTTGATGTAAATGATGTACTGG-TTATTGTTGTTATGTAAA
771716 CTAACCATGT
Statistics
Matches: 103, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
61 9 0.09
62 90 0.87
63 4 0.04
ACGTcount: A:0.27, C:0.05, G:0.22, T:0.46
Consensus pattern (60 bp):
TACTGGTTTATTGATGTTGATGTAAATGATGTACTGGTTATTGTTGTTATGTAAATGATG
Found at i:771676 original size:16 final size:16
Alignment explanation
Indices: 771624--771676 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
771614 TTGATGTAAA
771624 TGATGTACTGGTTAAT
1 TGATGTACTGGTTAAT
** *
771640 TGATG--CTTATATAAA
1 TGATGTACTGGT-TAAT
771655 TGATGTACTGGTTAAT
1 TGATGTACTGGTTAAT
771671 TGATGT
1 TGATGT
771677 TTATGTAAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 6
0.70 0.15 0.15
Matches are distributed among these distances:
14 3 0.11
15 8 0.29
16 14 0.50
17 3 0.11
ACGTcount: A:0.28, C:0.06, G:0.23, T:0.43
Consensus pattern (16 bp):
TGATGTACTGGTTAAT
Found at i:774068 original size:20 final size:20
Alignment explanation
Indices: 774043--774096 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
774033 CTCTGCTTTA
* *
774043 TTCTGTTTTATATTGTTTGC
1 TTCTGTTTGATATTGCTTGC
774063 TTCTGTTTGATATTGCTTGC
1 TTCTGTTTGATATTGCTTGC
**
774083 TTCTACTTGATATT
1 TTCTGTTTGATATT
774097 TGTAAGGGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.13, C:0.13, G:0.15, T:0.59
Consensus pattern (20 bp):
TTCTGTTTGATATTGCTTGC
Found at i:774984 original size:51 final size:52
Alignment explanation
Indices: 774914--775011 Score: 180
Period size: 51 Copynumber: 1.9 Consensus size: 52
774904 ATATAAAACT
*
774914 AAATTTCAAAAAAGTAATCATATTAATTTGATTATCATAATAATTTATGATA
1 AAATTTCAAAAAAGTAATCATATTAATTTAATTATCATAATAATTTATGATA
774966 AAATTTC-AAAAAGTAATCATATTAATTTAATTATCATAATAATTTA
1 AAATTTCAAAAAAGTAATCATATTAATTTAATTATCATAATAATTTA
775012 ATTATTATAT
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
51 38 0.84
52 7 0.16
ACGTcount: A:0.49, C:0.06, G:0.04, T:0.41
Consensus pattern (52 bp):
AAATTTCAAAAAAGTAATCATATTAATTTAATTATCATAATAATTTATGATA
Found at i:775003 original size:17 final size:17
Alignment explanation
Indices: 774981--775021 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
774971 TCAAAAAGTA
774981 ATCATATTAATTTAATT
1 ATCATATTAATTTAATT
*
774998 ATCATAATAATTTAATT
1 ATCATATTAATTTAATT
*
775015 ATTATAT
1 ATCATAT
775022 GTTTATTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (17 bp):
ATCATATTAATTTAATT
Found at i:775161 original size:16 final size:16
Alignment explanation
Indices: 775140--775174 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
775130 TCAATTACAA
*
775140 GTCAGGTTCATAACAG
1 GTCAGGTTCAAAACAG
*
775156 GTCAGGTTGAAAACAG
1 GTCAGGTTCAAAACAG
775172 GTC
1 GTC
775175 GGGTAATACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.23
Consensus pattern (16 bp):
GTCAGGTTCAAAACAG
Found at i:775549 original size:11 final size:11
Alignment explanation
Indices: 775535--775572 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
775525 ACTACATAGT
775535 TTATATATAAA
1 TTATATATAAA
*
775546 TTATATATGAA
1 TTATATATAAA
775557 TTATATATAAA
1 TTATATATAAA
*
775568 CTATA
1 TTATA
775573 CAACTTATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (11 bp):
TTATATATAAA
Found at i:775612 original size:2 final size:2
Alignment explanation
Indices: 775578--775685 Score: 70
Period size: 2 Copynumber: 56.5 Consensus size: 2
775568 CTATACAACT
* *
775578 TA TA TT TA TA TA T- TA TG TA TA -A T- TA TA -A TA TA TA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
775615 TG TA TA AA T- TA TA TA GTT TA T- TA -A TA TA AA CTA TA TA GTT
1 TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA -TA TA TA -TA
775655 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
775686 GGTTTAAAGT
Statistics
Matches: 82, Mismatches: 13, Indels: 22
0.70 0.11 0.19
Matches are distributed among these distances:
1 8 0.10
2 71 0.87
3 3 0.04
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (2 bp):
TA
Found at i:775642 original size:22 final size:24
Alignment explanation
Indices: 775536--775685 Score: 91
Period size: 24 Copynumber: 6.2 Consensus size: 24
775526 CTACATAGTT
775536 TATATATAAATTATATATGAATTATATA
1 TATATATAAATTATATA-G--TT-TATA
* *
775564 TAAACTATACAACT-TATA-TTTATA
1 TATA-TATA-AATTATATAGTTTATA
* *
775588 TATTATGTATAATTATA-A-TATATA
1 TA-TATATA-AATTATATAGTTTATA
*
775612 TATTGTATAAATTATATAGTTTAT-
1 TA-TATATAAATTATATAGTTTATA
*
775636 TA-ATATAAACTATATAGTTTATA
1 TATATATAAATTATATAGTTTATA
* *
775659 TATATATATA-TATATA-TATATA
1 TATATATAAATTATATAGTTTATA
775681 TATAT
1 TATAT
775686 GGTTTAAAGT
Statistics
Matches: 100, Mismatches: 14, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
22 28 0.28
23 15 0.15
24 34 0.34
25 9 0.09
28 3 0.03
29 8 0.08
30 3 0.03
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (24 bp):
TATATATAAATTATATAGTTTATA
Found at i:775705 original size:71 final size:70
Alignment explanation
Indices: 775569--775706 Score: 158
Period size: 71 Copynumber: 2.0 Consensus size: 70
775559 ATATATAAAC
* * *
775569 TATACAACTTATATTTATATATTATGTATAATTATAATATATATATTGTATAAATTATATAGTTT
1 TATACAACTTATATTTATATATTATATATAATTATAATATATATATGGTATAAATTATAGAGTTT
775634 ATTAA
66 ATTAA
*
775639 TATA-AACTATATAGTTTATATA-TATATAT-ATATATATATATATATATGGTTTAAAGTT-TAG
1 TATACAACT-TATA-TTTATATATTATATATAAT-TATA-ATATATATATGGTATAAA-TTATAG
*
775700 GGTTTAT
61 AGTTTAT
775707 GATTTAGGGT
Statistics
Matches: 58, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
69 6 0.10
70 18 0.31
71 32 0.55
72 2 0.03
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.49
Consensus pattern (70 bp):
TATACAACTTATATTTATATATTATATATAATTATAATATATATATGGTATAAATTATAGAGTTT
ATTAA
Found at i:775839 original size:42 final size:42
Alignment explanation
Indices: 775787--775869 Score: 132
Period size: 42 Copynumber: 2.0 Consensus size: 42
775777 TAAACAATAA
* *
775787 ACTATGTAAACTATATAGTTTACATATG-ACATATATATATAG
1 ACTATATAAACTATACAGTTTACATATGAAC-TATATATATAG
775829 ACTATATAAACTATACAGTTTACATATGAACTATATATATA
1 ACTATATAAACTATACAGTTTACATATGAACTATATATATA
775870 CTATAGTTGA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
42 36 0.95
43 2 0.05
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.37
Consensus pattern (42 bp):
ACTATATAAACTATACAGTTTACATATGAACTATATATATAG
Found at i:775868 original size:33 final size:35
Alignment explanation
Indices: 775831--776008 Score: 129
Period size: 35 Copynumber: 5.0 Consensus size: 35
775821 ATATATAGAC
* *
775831 TATATAAACTATA-CA-GTTTACATATGAACTATA
1 TATATAAACTATATGATATTTACATATGAACTATA
* *
775864 TATAT--ACTATAGTTGATATTTATATATAAACTATA
1 TATATAAACTATA--TGATATTTACATATGAACTATA
775899 GTTTACATATAAACTATAGTTGATATTTACATATGAACTATA
1 ---T--ATATAAACTATA--TGATATTTACATATGAACTATA
*
775941 TATATAAACTATAT-A-GTTTACATATGAACTATA
1 TATATAAACTATATGATATTTACATATGAACTATA
* * *
775974 TATGT--ACTATAGTTGATATTTATATATGAATTATA
1 TATATAAACTATA--TGATATTTACATATGAACTATA
776009 GTTTACATAT
Statistics
Matches: 119, Mismatches: 11, Indels: 28
0.75 0.07 0.18
Matches are distributed among these distances:
31 12 0.10
33 27 0.23
34 3 0.03
35 31 0.26
37 12 0.10
38 1 0.01
39 1 0.01
40 4 0.03
42 28 0.24
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (35 bp):
TATATAAACTATATGATATTTACATATGAACTATA
Found at i:775887 original size:24 final size:23
Alignment explanation
Indices: 775860--775940 Score: 82
Period size: 24 Copynumber: 3.6 Consensus size: 23
775850 ACATATGAAC
775860 TATATATATACTATAGTTGATATT
1 TATATATA-ACTATAGTTGATATT
775884 TATATATAAACTATAGTT--TA--
1 TATATAT-AACTATAGTTGATATT
*
775904 CATATA-AACTATAGTTGATATT
1 TATATATAACTATAGTTGATATT
*
775926 TACATATGAACTATA
1 TATATAT-AACTATA
775941 TATATAAACT
Statistics
Matches: 47, Mismatches: 3, Indels: 14
0.73 0.05 0.22
Matches are distributed among these distances:
18 10 0.21
20 7 0.15
22 6 0.13
24 23 0.49
25 1 0.02
ACGTcount: A:0.42, C:0.07, G:0.07, T:0.43
Consensus pattern (23 bp):
TATATATAACTATAGTTGATATT
Found at i:775903 original size:18 final size:18
Alignment explanation
Indices: 775882--776111 Score: 101
Period size: 18 Copynumber: 12.2 Consensus size: 18
775872 ATAGTTGATA
775882 TTTATATATAAACTATAG
1 TTTATATATAAACTATAG
*
775900 TTTACATATAAACTATAG
1 TTTATATATAAACTATAG
* * * *
775918 TTGATATTTACA-TATGAAC
1 TTTATATATAAACTAT--AG
*
775937 TATATATATAAACTATATAG
1 TTTATATATAAAC--TATAG
* *
775957 TTTACATATGAACTATA-
1 TTTATATATAAACTATAG
* * **
775974 TATGTACTAT-AGTTGATA-
1 TTTATA-TATAAACT-ATAG
* *
775992 TTTATATATGAATTATAG
1 TTTATATATAAACTATAG
*
776010 TTTACATATAAACTATATAG
1 TTTATATATAAAC--TATAG
* *
776030 TTTATATGCT-AAGTATAG
1 TTTATAT-ATAAACTATAG
*
776048 TTTACATATAAACTATAG
1 TTTATATATAAACTATAG
*
776066 TTGATATTTACATATGAACTATAG
1 TT--TA--T--ATATAAACTATAG
* *
776090 TTTACATATGAACTATAG
1 TTTATATATAAACTATAG
776108 TTTA
1 TTTA
776112 ATTGAAAGAA
Statistics
Matches: 159, Mismatches: 34, Indels: 38
0.69 0.15 0.16
Matches are distributed among these distances:
17 15 0.09
18 89 0.56
19 9 0.06
20 26 0.16
21 1 0.01
22 5 0.03
24 14 0.09
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.43
Consensus pattern (18 bp):
TTTATATATAAACTATAG
Found at i:775904 original size:53 final size:53
Alignment explanation
Indices: 775831--776028 Score: 224
Period size: 53 Copynumber: 3.6 Consensus size: 53
775821 ATATATAGAC
*
775831 TATATAAACTATACAGTTTACATATGAACTATATATATACTATAGTTGATATTTA
1 TATATAAACTAT--AGTTTACATATAAACTATATATATACTATAGTTGATATTTA
*
775886 TATATAAACTATAGTTTACATATAAACTATAGTTGATATTTAC-ATA--TGA-ACTATA
1 TATATAAACTATAGTTTACATATAAACTATA--T-ATA--TACTATAGTTGATA-TTTA
* *
775941 TATATAAACTATATAGTTTACATATGAACTATATATGTACTATAGTTGATATTTA
1 TATATAAAC--TATAGTTTACATATAAACTATATATATACTATAGTTGATATTTA
* *
775996 TATATGAATTATAGTTTACATATAAACTATATA
1 TATATAAACTATAGTTTACATATAAACTATATA
776029 GTTTATATGC
Statistics
Matches: 123, Mismatches: 8, Indels: 26
0.78 0.05 0.17
Matches are distributed among these distances:
52 3 0.02
53 44 0.36
54 3 0.02
55 42 0.34
56 4 0.03
57 24 0.20
58 3 0.02
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (53 bp):
TATATAAACTATAGTTTACATATAAACTATATATATACTATAGTTGATATTTA
Found at i:776104 original size:42 final size:41
Alignment explanation
Indices: 775979--776109 Score: 155
Period size: 42 Copynumber: 3.2 Consensus size: 41
775969 CTATATATGT
*
775979 ACTATAGTTGATATTTATATATGAATTATAGTTTACATATAA
1 ACTATAGTTGATATTTA-ATATGAACTATAGTTTACATATAA
* *
776021 ACTATA--T-A-GTTT-ATATGCTAAGTATAGTTTACATATAA
1 ACTATAGTTGATATTTAATATG--AACTATAGTTTACATATAA
*
776059 ACTATAGTTGATATTTACATATGAACTATAGTTTACATATGA
1 ACTATAGTTGATATTTA-ATATGAACTATAGTTTACATATAA
776101 ACTATAGTT
1 ACTATAGTT
776110 TAATTGAAAG
Statistics
Matches: 76, Mismatches: 5, Indels: 16
0.78 0.05 0.16
Matches are distributed among these distances:
36 5 0.07
38 27 0.36
39 1 0.01
40 2 0.03
41 1 0.01
42 35 0.46
44 5 0.07
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.43
Consensus pattern (41 bp):
ACTATAGTTGATATTTAATATGAACTATAGTTTACATATAA
Found at i:776682 original size:184 final size:183
Alignment explanation
Indices: 776459--776800 Score: 499
Period size: 184 Copynumber: 1.9 Consensus size: 183
776449 ATATGTTTGA
* *
776459 AAAAAATATAAAATAACAATTTAACCGTTCATTTTATAAAAATAAAATGCAAGTTTCATTAAAGA
1 AAAAAATATAAAATAACAATTTAACCGTTCATCTTATAAAAATAAAATGCAAGTTTCATAAAAGA
* * * *
776524 AAAAAGAGGGAACAAAAAGGTTAAATAAATAAGGGT-AATTATAGATTTAGTTTTTAAACTATCA
66 AAAAACAGGGAACAAAAAGATT-AATAAATAAGGGTAAATTATAGATTTAGTATCTAAACTATCA
* * **
776588 ATTTTGATTCATTTTAATACTTAAACTTTGATTTTTTTTAAAATCATATACTTG
130 ATTTTAATCCATTTTAATACCCAAACTTTGATTTTTTTTAAAATCATATACTTG
* ** * *
776642 AAAAAATA-AAATAGTAATAATTTAAGTGTTCATCTTATAAAAATAAAATGTAAGTTTCGTAAAA
1 AAAAAATATAAA-A-TAACAATTTAACCGTTCATCTTATAAAAATAAAATGCAAGTTTCATAAAA
*
776706 GAAAGAACAGGGAACAAAAAGATTAATAAATAAGGGTAAATTATAGATTTAGTATCTAAACTATC
64 GAAAAAACAGGGAACAAAAAGATTAATAAATAAGGGTAAATTATAGATTTAGTATCTAAACTATC
776771 AATTTTAATCCATTTTAATACCCAAACTTT
129 AATTTTAATCCATTTTAATACCCAAACTTT
776801 TAATAATTTT
Statistics
Matches: 140, Mismatches: 16, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
182 3 0.02
183 22 0.16
184 115 0.82
ACGTcount: A:0.47, C:0.08, G:0.10, T:0.34
Consensus pattern (183 bp):
AAAAAATATAAAATAACAATTTAACCGTTCATCTTATAAAAATAAAATGCAAGTTTCATAAAAGA
AAAAACAGGGAACAAAAAGATTAATAAATAAGGGTAAATTATAGATTTAGTATCTAAACTATCAA
TTTTAATCCATTTTAATACCCAAACTTTGATTTTTTTTAAAATCATATACTTG
Found at i:778773 original size:17 final size:18
Alignment explanation
Indices: 778732--778773 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
778722 TTATTTTTAG
* *
778732 GTTACAAGATTGACCCAA
1 GTTACAAAATAGACCCAA
*
778750 ATTACAAAATAGACCC-A
1 GTTACAAAATAGACCCAA
778767 GTTACAA
1 GTTACAA
778774 CCTAAATTCA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.45, C:0.21, G:0.12, T:0.21
Consensus pattern (18 bp):
GTTACAAAATAGACCCAA
Found at i:781937 original size:6 final size:5
Alignment explanation
Indices: 781909--782033 Score: 79
Period size: 5 Copynumber: 25.8 Consensus size: 5
781899 AACAAAGAAA
* **
781909 AAAAG AAGAAA AAAAG AAAAG AAATAG -AAA- AAAAG AGGAG AAGAAG
1 AAAAG AA-AAG AAAAG AAAAG AAA-AG AAAAG AAAAG AAAAG AA-AAG
* * *
781955 AAGAA- AAAAG AAAAG -AAA- AAGAG AAAAG AAGAG AAAA- AGAAG AAAAG
1 AA-AAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG
*
782002 AAAA- AAAAG -AAAG AAAA- AGAAG AAAGAG AAAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAA-AG AAAA
782034 AATTAAGTAT
Statistics
Matches: 93, Mismatches: 14, Indels: 26
0.70 0.11 0.20
Matches are distributed among these distances:
4 25 0.27
5 50 0.54
6 18 0.19
ACGTcount: A:0.77, C:0.00, G:0.22, T:0.01
Consensus pattern (5 bp):
AAAAG
Found at i:781939 original size:18 final size:17
Alignment explanation
Indices: 781902--782035 Score: 101
Period size: 19 Copynumber: 7.2 Consensus size: 17
781892 GGCCAAAAAC
*
781902 AAAGAAAAAAAGAAGAAAA
1 AAAGAAAAGAA-AAG-AAA
781921 AAAGAAAAGAAATAGAAAA
1 AAAGAAAAGAAA-AG-AAA
781940 AAAGAGGAGAAGAAGAAGAAA
1 AAAGA--A-AAGAA-AAGAAA
*
781961 AAAGAAAAGAAAAAGAGA
1 AAAGAAAAG-AAAAGAAA
*
781979 AAAGAAGAGAAAAAGAAGA
1 AAAGAAAAG-AAAAGAA-A
781998 AAAGAAAA-AAAAGAAA
1 AAAGAAAAGAAAAGAAA
782014 GAAA-AAGAAGAAAGAGAAA
1 -AAAGAA-AAGAAA-AGAAA
782033 AAA
1 AAA
782036 TTAAGTATTT
Statistics
Matches: 99, Mismatches: 5, Indels: 23
0.78 0.04 0.18
Matches are distributed among these distances:
16 3 0.03
17 12 0.12
18 30 0.30
19 37 0.37
21 9 0.09
22 7 0.07
23 1 0.01
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.01
Consensus pattern (17 bp):
AAAGAAAAGAAAAGAAA
Found at i:781980 original size:53 final size:47
Alignment explanation
Indices: 781904--782035 Score: 132
Period size: 46 Copynumber: 2.9 Consensus size: 47
781894 CCAAAAACAA
* * * * *
781904 AGAAAAAAAGAAGAAA-AAAAG-AAAAGA-AATAG-AAAAAAAGAGG
1 AGAAAAGAAGAAAAAAGAAAAGAAAAAGAGAAAAGAAAAAAAAAAGA
* *
781947 AGAAGAAGAAGAAAAAAGAAAAGAAAAAGAGAAAAGAAGAGAAAAAGA
1 AGAA-AAGAAGAAAAAAGAAAAGAAAAAGAGAAAAGAAAAAAAAAAGA
781995 AGAAAAGAA-AAAAAAG-AAAGAAAAAGAAGAAAGAGAAAAAA
1 AGAAAAGAAGAAAAAAGAAAAGAAAAAG-AGAAA-AGAAAAAA
782036 TTAAGTATTT
Statistics
Matches: 73, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
43 4 0.05
44 10 0.14
45 15 0.21
46 18 0.25
47 15 0.21
48 11 0.15
ACGTcount: A:0.77, C:0.00, G:0.22, T:0.01
Consensus pattern (47 bp):
AGAAAAGAAGAAAAAAGAAAAGAAAAAGAGAAAAGAAAAAAAAAAGA
Found at i:782031 original size:19 final size:18
Alignment explanation
Indices: 781902--782035 Score: 106
Period size: 18 Copynumber: 7.6 Consensus size: 18
781892 GGCCAAAAAC
*
781902 AAAGAAAAAAAG-AAGAA
1 AAAGAAGAAAAGAAAGAA
781919 AAA-AAGAAAAGAAATAGAA
1 AAAGAAGAAAAG-AA-AGAA
**
781938 AAA-AAGAGGAG-AAGAA
1 AAAGAAGAAAAGAAAGAA
*
781954 GAAGAA-AAAAGAAAAGAA
1 AAAGAAGAAAAG-AAAGAA
781972 AAAG-AGAAAAGAAGAGAA
1 AAAGAAGAAAAGAA-AGAA
781990 AAAGAAGAAAAGAAA-AA
1 AAAGAAGAAAAGAAAGAA
782007 AAAGAAAGAAAA-AGAAGAA
1 AAAG-AAGAAAAGA-AAGAA
*
782026 AGAGAA-AAAA
1 AAAGAAGAAAA
782036 TTAAGTATTT
Statistics
Matches: 97, Mismatches: 8, Indels: 24
0.75 0.06 0.19
Matches are distributed among these distances:
16 16 0.16
17 20 0.21
18 34 0.35
19 27 0.28
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.01
Consensus pattern (18 bp):
AAAGAAGAAAAGAAAGAA
Found at i:784893 original size:136 final size:136
Alignment explanation
Indices: 784632--784878 Score: 298
Period size: 136 Copynumber: 1.8 Consensus size: 136
784622 TGTCATCCTA
* * * *
784632 AGACAATCAGATTTCCTCAACAAGAAGGAACCGCGTTGTCTCCAAATCTCCAAATATGGCTAGAC
1 AGACAATAAGAATTCCTCAACAAGAAGGAACCGCGTTGTCTCCAAATATCCAAATACGGCTAGAC
* * * * *
784697 GTCCTCAACAAAAAGGAACAATGTCATCCACTAACCAGATATTCTCAACGTAAAGAAACAATATC
66 GTCCTCAACAAAAAGAAACAATATCATCCACCAACCAGATATCCTCAACGTAAAGAAACAACATC
784762 AATCTC
131 AATCTC
** * *
784768 AGACAATAAGAATTCCTCAACGTGAAGGAA-CGTGTTGTCTCCAAATTATCCAAATACGTCTAGA
1 AGACAATAAGAATTCCTCAACAAGAAGGAACCGCGTTGTCTCCAAA-TATCCAAATACGGCTAGA
**** ** *
784832 CGTCCTCAATGCGAAGAAACAATATTGTCCACCAACCAGATCTCCTC
65 CGTCCTCAACAAAAAGAAACAATATCATCCACCAACCAGATATCCTC
784879 GATGAGAAGG
Statistics
Matches: 91, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
135 14 0.15
136 77 0.85
ACGTcount: A:0.38, C:0.26, G:0.14, T:0.22
Consensus pattern (136 bp):
AGACAATAAGAATTCCTCAACAAGAAGGAACCGCGTTGTCTCCAAATATCCAAATACGGCTAGAC
GTCCTCAACAAAAAGAAACAATATCATCCACCAACCAGATATCCTCAACGTAAAGAAACAACATC
AATCTC
Found at i:785564 original size:3 final size:3
Alignment explanation
Indices: 785551--785612 Score: 70
Period size: 3 Copynumber: 20.7 Consensus size: 3
785541 ATCCTAGTTG
* * * * *
785551 TTA TGA TTA TTA TTA TTA TTA TTA TCA TTA CTA TTA TTA TTA ATA ATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
785599 TTA TTT TTA TTA TT
1 TTA TTA TTA TTA TT
785613 TTTAGGTTGC
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:787136 original size:16 final size:16
Alignment explanation
Indices: 787095--787136 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
787085 ATATTTATAC
*
787095 TTTATTATTTTGTCCT
1 TTTATTATTTAGTCCT
*
787111 TTTATGATTTAGTCCT
1 TTTATTATTTAGTCCT
*
787127 TTTGTTATTT
1 TTTATTATTT
787137 CGTTTCATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.14, C:0.10, G:0.10, T:0.67
Consensus pattern (16 bp):
TTTATTATTTAGTCCT
Found at i:789714 original size:28 final size:28
Alignment explanation
Indices: 789671--789734 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
789661 ATCTAAGAAG
* *
789671 AACACTCCGCCGCCAGATCCAAACTCAC
1 AACACTCCACCACCAGATCCAAACTCAC
789699 AACACTCCACCACCAGATCCAAACTCAC
1 AACACTCCACCACCAGATCCAAACTCAC
*
789727 AACTCTCC
1 AACACTCC
789735 CCCGCCGCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.34, C:0.47, G:0.06, T:0.12
Consensus pattern (28 bp):
AACACTCCACCACCAGATCCAAACTCAC
Found at i:793320 original size:18 final size:18
Alignment explanation
Indices: 793297--793334 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
793287 CCAGATGTTT
793297 TATTAGGTGTTTTTACTG
1 TATTAGGTGTTTTTACTG
793315 TATTAGGTGTTTTTACTG
1 TATTAGGTGTTTTTACTG
793333 TA
1 TA
793335 GTCACCATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.18, C:0.05, G:0.21, T:0.55
Consensus pattern (18 bp):
TATTAGGTGTTTTTACTG
Found at i:793819 original size:2 final size:2
Alignment explanation
Indices: 793812--793888 Score: 154
Period size: 2 Copynumber: 38.5 Consensus size: 2
793802 TCAATCTACA
793812 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
793854 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
793889 ATTTATGAAA
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 75 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:794081 original size:72 final size:72
Alignment explanation
Indices: 793994--794129 Score: 193
Period size: 72 Copynumber: 1.9 Consensus size: 72
793984 ATACATGCGT
* *
793994 GTCATAAATTTATGACACACAAATGTGTGTCATCT-TCATTTATGACGGGGGCTTCAATGACGCT
1 GTCATAAATTTATGACACACAAATGCGCGTCATCTAT-ATTTATGACGGGGGCTTCAATGACGCT
794058 CAATGCAC
65 CAATGCAC
* * * *
794066 GTCATAGATTTATGACACACAATTGCGCGTCATCTGATATTTATGTCGGTGGCTTCAATGACGC
1 GTCATAAATTTATGACACACAAATGCGCGTCATCT-ATATTTATGACGGGGGCTTCAATGACGC
794130 GAATTTGTGT
Statistics
Matches: 56, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
72 31 0.55
73 24 0.43
74 1 0.02
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.32
Consensus pattern (72 bp):
GTCATAAATTTATGACACACAAATGCGCGTCATCTATATTTATGACGGGGGCTTCAATGACGCTC
AATGCAC
Found at i:799391 original size:21 final size:21
Alignment explanation
Indices: 799348--799420 Score: 121
Period size: 21 Copynumber: 3.5 Consensus size: 21
799338 CCCTGCAGGG
*
799348 GTATCGATACTC-GAGGTTCA
1 GTATCGATACTCAGAGGGTCA
*
799368 GTATCGATACTCAGTGGGTCA
1 GTATCGATACTCAGAGGGTCA
799389 GTATCGATACTCAGAGGGTCA
1 GTATCGATACTCAGAGGGTCA
799410 GTATCGATACT
1 GTATCGATACT
799421 GAGGCATATT
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
20 12 0.24
21 37 0.76
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (21 bp):
GTATCGATACTCAGAGGGTCA
Found at i:806390 original size:20 final size:21
Alignment explanation
Indices: 806365--806411 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
806355 CTACGAGGGC
806365 ATCGATACTC-G-GGGTCCAGT
1 ATCGATACTCAGAGGGT-CAGT
806385 ATCGATACTCAGAGGGTCAGT
1 ATCGATACTCAGAGGGTCAGT
806406 ATCGAT
1 ATCGAT
806412 GTTGAGGCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
20 10 0.40
21 11 0.44
22 4 0.16
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (21 bp):
ATCGATACTCAGAGGGTCAGT
Found at i:810145 original size:68 final size:68
Alignment explanation
Indices: 809746--810128 Score: 520
Period size: 68 Copynumber: 5.6 Consensus size: 68
809736 ATGGCCAAGT
* * * * *
809746 TGTGCATTTGACAGAAAGATGTC-ATTAATGCGAGTTAGGTGAAAGGCTAAGTTCCTTTAAGGCC
1 TGTGCATTTGACAGAAAGGTGTCAATT-ATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCC
809810 TAGC
65 TAGC
* * *
809814 TGTGCATTTGACAGAAAGGTATC-ATTAATGCCAGTTAGATGAAAGGCTAAATGCC-TTGAGGTC
1 TGTGCATTTGACAGAAAGGTGTCAATT-ATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCC
809877 TAGC
65 TAGC
* * * * *
809881 TGTGCATTTGAAAAAAAGGTTTAAATTATGTCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCT
1 TGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCT
**
809946 AAT
66 AGC
* * * *
809949 TGTGCATTTGATAGAAAGGTGTCAATTATGCTAGTTAGATGAAAGACTAAGGGCCTTTGAGGCCT
1 TGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCT
810014 AGC
66 AGC
* * *
810017 TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTATATGAAAGGCTAGGTGCCTTTGAGGCCT
1 TGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCT
810082 AGC
66 AGC
*
810085 TGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTATATGAAA
1 TGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAA
810129 TGTTATATAT
Statistics
Matches: 278, Mismatches: 35, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
67 55 0.20
68 223 0.80
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (68 bp):
TGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCT
AGC
Found at i:810239 original size:45 final size:45
Alignment explanation
Indices: 810166--810588 Score: 569
Period size: 45 Copynumber: 9.4 Consensus size: 45
810156 GATGTATAAC
* *
810166 AATGCATATGGGTGCATTCTCGGCATGAAAGGATGCCATAATTAA
1 AATGCATATGGGTGCATTATCGGCATGAAAGGATGCCATAATTGA
* * * * *
810211 AAAGCATATGGTTACATTATTGGTATGAAAGGATGCCATAATTGA
1 AATGCATATGGGTGCATTATCGGCATGAAAGGATGCCATAATTGA
*
810256 AATGCATATGGGTGAATTATCGGCATGAAAGGATGCCATAATTGA
1 AATGCATATGGGTGCATTATCGGCATGAAAGGATGCCATAATTGA
* * *
810301 AATGGATATGGGTGCATTATTGGCATGAAATGATGCCATAATTGA
1 AATGCATATGGGTGCATTATCGGCATGAAAGGATGCCATAATTGA
* *
810346 AATGCATATGGGTGCATT-TGTGGCATGAAAGGATGACATAATTGA
1 AATGCATATGGGTGCATTAT-CGGCATGAAAGGATGCCATAATTGA
* * * *
810391 AATGCATAAGGGTGCATTATTGTCATGAAATGATGCCATAATTGA
1 AATGCATATGGGTGCATTATCGGCATGAAAGGATGCCATAATTGA
* * * **
810436 AATGCATATGGGCGTATTCTCAACATGAAAGGATGCCATAATTGA
1 AATGCATATGGGTGCATTATCGGCATGAAAGGATGCCATAATTGA
* * *
810481 AATGCATATGGGTGCATTCTCGACATAAAAGGATGCCATAATTGA
1 AATGCATATGGGTGCATTATCGGCATGAAAGGATGCCATAATTGA
* *
810526 AATGCATATGGGTGCATTCTCGGCATGAAAGGATGCTATAATTGA
1 AATGCATATGGGTGCATTATCGGCATGAAAGGATGCCATAATTGA
* *
810571 AATGCATATAGGTACATT
1 AATGCATATGGGTGCATT
810589 TTAATTATAA
Statistics
Matches: 335, Mismatches: 41, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
44 1 0.00
45 333 0.99
46 1 0.00
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (45 bp):
AATGCATATGGGTGCATTATCGGCATGAAAGGATGCCATAATTGA
Found at i:810344 original size:22 final size:22
Alignment explanation
Indices: 810277--810344 Score: 57
Period size: 22 Copynumber: 3.0 Consensus size: 22
810267 GTGAATTATC
*
810277 GGCATGAAAGGATGCCATAATT
1 GGCATGAAATGATGCCATAATT
** * * *
810299 GAAATGGATATGGGTG-CATTATT
1 GGCAT-GAAAT-GATGCCATAATT
810322 GGCATGAAATGATGCCATAATT
1 GGCATGAAATGATGCCATAATT
810344 G
1 G
810345 AAATGCATAT
Statistics
Matches: 32, Mismatches: 11, Indels: 6
0.65 0.22 0.12
Matches are distributed among these distances:
21 3 0.09
22 14 0.44
23 12 0.38
24 3 0.09
ACGTcount: A:0.34, C:0.10, G:0.28, T:0.28
Consensus pattern (22 bp):
GGCATGAAATGATGCCATAATT
Found at i:814508 original size:20 final size:19
Alignment explanation
Indices: 814454--814522 Score: 93
Period size: 19 Copynumber: 3.6 Consensus size: 19
814444 GATGCAATCA
814454 GTATCGATACCGAAGGGGG
1 GTATCGATACCGAAGGGGG
*
814473 GTATCGATATCGAAGGGGG
1 GTATCGATACCGAAGGGGG
* **
814492 GTATCGATACCAAAAGGAAG
1 GTATCGATACC-GAAGGGGG
814512 GTATCGATACC
1 GTATCGATACC
814523 ATTCCAAAAC
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
19 28 0.64
20 16 0.36
ACGTcount: A:0.32, C:0.16, G:0.33, T:0.19
Consensus pattern (19 bp):
GTATCGATACCGAAGGGGG
Found at i:814574 original size:19 final size:19
Alignment explanation
Indices: 814546--814582 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
814536 ATGCAAAAAT
814546 GGTATCAGTACCATAATAG
1 GGTATCAGTACCATAATAG
*
814565 GGTATGAGTACCATAATA
1 GGTATCAGTACCATAATA
814583 TAGTAGTATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.27
Consensus pattern (19 bp):
GGTATCAGTACCATAATAG
Found at i:815093 original size:109 final size:109
Alignment explanation
Indices: 814959--815158 Score: 260
Period size: 109 Copynumber: 1.8 Consensus size: 109
814949 GTGCAAAAAT
* * * * * * * *
814959 CTAAGAAATTCATACTAGGTATATGAATTTCCGTATGGGCACTATGTGTGCAAA-ACTAAGAAAT
1 CTAAAAAATTCATACTAAGTATATGAATTTCCGTACGAGAAATATATGTACAAATA-TAAGAAAT
*
815023 TCATACTAAGT-GTATGAATTTCTGTATGGGCACTAGGTGTGCGGA
65 TCATAATAAGTAG-ATGAATTTCTGTATGGGCACTAGGTGTGCGGA
* * *
815068 CTAAAAAATTCATACTAAGTGTATGAATTTCTGTACGAGAAATATATGTACAAATATAAGAAGTT
1 CTAAAAAATTCATACTAAGTATATGAATTTCCGTACGAGAAATATATGTACAAATATAAGAAATT
815133 CATAATAAGTAGATGAATTTCTGTAT
66 CATAATAAGTAGATGAATTTCTGTAT
815159 TGGTAGTGGG
Statistics
Matches: 77, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
109 75 0.97
110 2 0.03
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.33
Consensus pattern (109 bp):
CTAAAAAATTCATACTAAGTATATGAATTTCCGTACGAGAAATATATGTACAAATATAAGAAATT
CATAATAAGTAGATGAATTTCTGTATGGGCACTAGGTGTGCGGA
Found at i:815095 original size:54 final size:55
Alignment explanation
Indices: 814947--815102 Score: 224
Period size: 55 Copynumber: 2.8 Consensus size: 55
814937 ATTGCACTGA
* * * *
814947 GTGTGCAAAAATCTAAGAAATTCATACTAGGTATATGAATTTCCGTATGGGCACTAT
1 GTGTGC-AAAA-CTAAGAAATTCATACTAAGTGTATGAATTTCTGTATGGGCACTAG
815004 GTGTGCAAAACTAAGAAATTCATACTAAGTGTATGAATTTCTGTATGGGCACTAG
1 GTGTGCAAAACTAAGAAATTCATACTAAGTGTATGAATTTCTGTATGGGCACTAG
** *
815059 GTGTGC-GGACTAAAAAATTCATACTAAGTGTATGAATTTCTGTA
1 GTGTGCAAAACTAAGAAATTCATACTAAGTGTATGAATTTCTGTA
815103 CGAGAAATAT
Statistics
Matches: 92, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
54 35 0.38
55 47 0.51
56 4 0.04
57 6 0.07
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.32
Consensus pattern (55 bp):
GTGTGCAAAACTAAGAAATTCATACTAAGTGTATGAATTTCTGTATGGGCACTAG
Found at i:815456 original size:68 final size:67
Alignment explanation
Indices: 815319--815642 Score: 443
Period size: 68 Copynumber: 4.8 Consensus size: 67
815309 AAAGATTAAT
* ** *
815319 GGCCTAGTTGTGCAATTGGTAGAAAGGTGTCATTAATG-CAGTTAGATGAAAGGCTAAGTTCCTT
1 GGCCTAGTTGTGCATTTGACAGAAAGGTGTCATT-ATGCCAGTTAGATGAAAGGCTAAGTGCCTT
815383 TGA
65 TGA
* * *
815386 GGCATAGTTGTGCATTTGACAGAAAGGTGTCATTAATGCCAGTTAGATGAAAGGCTAAATACCTT
1 GGCCTAGTTGTGCATTTGACAGAAAGGTGTCATT-ATGCCAGTTAGATGAAAGGCTAAGTGCCTT
815451 TGA
65 TGA
* * *
815454 GGCCTAGTTATGCATTTGACAGAAATGTGTCAATTATGCCAGGTAGATGAAAGGCTAAGTGCCTT
1 GGCCTAGTTGTGCATTTGACAGAAAGGTGTC-ATTATGCCAGTTAGATGAAAGGCTAAGTGCCTT
815519 TGA
65 TGA
* * * *
815522 GGCCTAGCTGTGCATTAGATAGAAAGGTGTCAGTTATGCCAGTTAGATGAAAGGCTAGGTGCCTT
1 GGCCTAGTTGTGCATTTGACAGAAAGGTGTCA-TTATGCCAGTTAGATGAAAGGCTAAGTGCCTT
815587 TGA
65 TGA
* * *
815590 GGCCTAGCTGTGCATTTGACAGAAAGGTGTAAATTATGCTAGTTAGATGAAAG
1 GGCCTAGTTGTGCATTTGACAGAAAGGTGT-CATTATGCCAGTTAGATGAAAG
815643 ATGCCATAAT
Statistics
Matches: 230, Mismatches: 23, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
67 35 0.15
68 191 0.83
69 4 0.02
ACGTcount: A:0.30, C:0.13, G:0.28, T:0.29
Consensus pattern (67 bp):
GGCCTAGTTGTGCATTTGACAGAAAGGTGTCATTATGCCAGTTAGATGAAAGGCTAAGTGCCTTT
GA
Found at i:816050 original size:45 final size:45
Alignment explanation
Indices: 815636--816029 Score: 596
Period size: 45 Copynumber: 8.8 Consensus size: 45
815626 TGCTAGTTAG
*
815636 ATGAAA-GATGCCATAATTGAAATGCATATGGGTGCATTATTGGT
1 ATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATTGGC
** * * *
815680 ATGAAATAATCCCATAATTGAAATACATATGGTTGCATTATTGGC
1 ATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATTGGC
*
815725 ATGAAAGGATGCCATAATTGAAATGGATATGGGTGCATTATTGGC
1 ATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATTGGC
*
815770 ATGAAAGAATGCCATAATTGAAATGCATATGGGTGCATTAGTT-GC
1 ATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTA-TTGGC
*
815815 ATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATTGTC
1 ATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATTGGC
* *
815860 ATGAAAGGATGCCATAATTGAAATGCATATGGGCGCATT-CTGAGC
1 ATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATTG-GC
* * *
815905 ATGAAAGGATGCCATAATTGAAATGCATATGAGTGCATTCTCGGC
1 ATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATTGGC
* *
815950 ATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTCTCGGC
1 ATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATTGGC
*
815995 ATGAAAGGATGCCATAATTGAAATGCATATAGGTG
1 ATGAAAGGATGCCATAATTGAAATGCATATGGGTG
816030 TATTTTAAGC
Statistics
Matches: 321, Mismatches: 24, Indels: 9
0.91 0.07 0.03
Matches are distributed among these distances:
44 10 0.03
45 308 0.96
46 3 0.01
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.29
Consensus pattern (45 bp):
ATGAAAGGATGCCATAATTGAAATGCATATGGGTGCATTATTGGC
Found at i:826078 original size:24 final size:24
Alignment explanation
Indices: 826051--826098 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
826041 GCATGACATG
826051 GTACATAGATGTTTTATACATCAT
1 GTACATAGATGTTTTATACATCAT
*
826075 GTACATAGATGTTTTATCCATCAT
1 GTACATAGATGTTTTATACATCAT
826099 ATGGAAGACT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.31, C:0.15, G:0.12, T:0.42
Consensus pattern (24 bp):
GTACATAGATGTTTTATACATCAT
Found at i:834561 original size:19 final size:19
Alignment explanation
Indices: 834537--834576 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
834527 TAGTAGGGCT
834537 TATTCCTTCAAATTAGCCA
1 TATTCCTTCAAATTAGCCA
*
834556 TATTCCTTCAAATTATCCA
1 TATTCCTTCAAATTAGCCA
834575 TA
1 TA
834577 GTCCAACCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.03, T:0.40
Consensus pattern (19 bp):
TATTCCTTCAAATTAGCCA
Done.