Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009001.1 Hibiscus syriacus cultivar Beakdansim tig00112383_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4740655
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 24
Found at i:723158 original size:2 final size:2
Alignment explanation
Indices: 723151--723180 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
723141 AATTTTTATC
723151 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
723181 TTATTGTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:723331 original size:21 final size:21
Alignment explanation
Indices: 723307--723346 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
723297 TATTTCCTAT
723307 TGAAAATTT-GTTTCGCCCCAC
1 TGAAAATTTAG-TTCGCCCCAC
*
723328 TGAAATTTTAGTTCGCCCC
1 TGAAAATTTAGTTCGCCCC
723347 CCTTTAAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.94
22 1 0.06
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.35
Consensus pattern (21 bp):
TGAAAATTTAGTTCGCCCCAC
Found at i:723475 original size:3 final size:3
Alignment explanation
Indices: 723467--723518 Score: 52
Period size: 3 Copynumber: 17.0 Consensus size: 3
723457 TTTTTCCGAG
* * *
723467 TTA TTA TTA TTA TTTA ATA ATA TTA TTA CTTA TTA GTA TTA TTA TT-
1 TTA TTA TTA TTA -TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
723513 TTA TTA
1 TTA TTA
723519 CAGGTTTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
2 2 0.05
3 34 0.81
4 6 0.14
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:723492 original size:16 final size:16
Alignment explanation
Indices: 723471--723513 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
723461 TCCGAGTTAT
723471 TATTATTATTTAATAA
1 TATTATTATTTAATAA
* * *
723487 TATTATTACTTATTAG
1 TATTATTATTTAATAA
723503 TATTATTATTT
1 TATTATTATTT
723514 TATTACAGGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (16 bp):
TATTATTATTTAATAA
Found at i:723492 original size:19 final size:19
Alignment explanation
Indices: 723468--723517 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
723458 TTTTCCGAGT
723468 TATTATTATTATTTAATAA
1 TATTATTATTATTTAATAA
* *
723487 TATTATTACTTA-TTAGTAT
1 TATTATTA-TTATTTAATAA
723506 TATTATT-TTATT
1 TATTATTATTATT
723518 ACAGGTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 3 0.11
18 1 0.04
19 20 0.74
20 3 0.11
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (19 bp):
TATTATTATTATTTAATAA
Found at i:728939 original size:18 final size:16
Alignment explanation
Indices: 728916--728951 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 16
728906 TATTATTTAT
728916 AAACTATATAGTATATAC
1 AAACTATATA--ATATAC
728934 AAACTATATAATATAC
1 AAACTATATAATATAC
728950 AA
1 AA
728952 TGTAACACAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
18 10 0.56
ACGTcount: A:0.56, C:0.11, G:0.03, T:0.31
Consensus pattern (16 bp):
AAACTATATAATATAC
Found at i:729009 original size:24 final size:24
Alignment explanation
Indices: 728981--729039 Score: 109
Period size: 24 Copynumber: 2.5 Consensus size: 24
728971 TTAACTATCT
728981 AACATGCAATGGATCATGAAATGC
1 AACATGCAATGGATCATGAAATGC
729005 AACATGCAATGGATCATGAAATGC
1 AACATGCAATGGATCATGAAATGC
*
729029 AACATGAAATG
1 AACATGCAATG
729040 CTATATGAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.44, C:0.15, G:0.20, T:0.20
Consensus pattern (24 bp):
AACATGCAATGGATCATGAAATGC
Found at i:729048 original size:12 final size:12
Alignment explanation
Indices: 728981--729040 Score: 66
Period size: 12 Copynumber: 5.0 Consensus size: 12
728971 TTAACTATCT
* *
728981 AACATGCAATGG
1 AACATGAAATGC
*
728993 ATCATGAAATGC
1 AACATGAAATGC
* *
729005 AACATGCAATGG
1 AACATGAAATGC
*
729017 ATCATGAAATGC
1 AACATGAAATGC
729029 AACATGAAATGC
1 AACATGAAATGC
729041 TATATGAATT
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
12 38 1.00
ACGTcount: A:0.43, C:0.17, G:0.20, T:0.20
Consensus pattern (12 bp):
AACATGAAATGC
Found at i:730050 original size:132 final size:135
Alignment explanation
Indices: 729764--730054 Score: 315
Period size: 132 Copynumber: 2.2 Consensus size: 135
729754 AATTATGAAA
* * * * *
729764 AAGATTTTCACTGATCCAACTCCTTCTGTGAAGGATTAAGTAACATGACAAATGCTAATCTAACT
1 AAGATTATCACTGATCCAACTCCTTCCGTGAAGAATCAAGTAACATGACAAATGCTAACCTAACT
** * * *
729829 CATTCTGTGAAGAATCAAAACAATTTGCCAATGCCGATCTACCTCATTCTATGATAGAATCGAAC
66 CATTCTGTGAAGAATCAAAACAAAATGCCAATGCCGAGCTACCTCATTATATGATAAAATCGAAC
729894 AAAAT
131 AAAAT
* * * * * *
729899 AAGATTATGA-TGATTCAACTCCTTCCGTGAAGAATCGAGTAGA-ATGAC-ACTGTTGACCTAAC
1 AAGATTATCACTGATCCAACTCCTTCCGTGAAGAATCAAGTA-ACATGACAAATGCTAACCTAAC
* * * * * * *
729961 TCCTTCTGTGAAGGATC-AAACAAAATGCCGATGCTGAGCTACCTCATTATGTGATAAAATTGAG
65 TCATTCTGTGAAGAATCAAAACAAAATGCCAATGCCGAGCTACCTCATTATATGATAAAATCGAA
730025 CAAAAT
130 CAAAAT
730031 AATG-TTA-CACTGATCCAACTCCTT
1 AA-GATTATCACTGATCCAACTCCTT
730055 ATATGAAGGA
Statistics
Matches: 128, Mismatches: 25, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
131 1 0.01
132 61 0.48
133 26 0.20
134 31 0.24
135 9 0.07
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (135 bp):
AAGATTATCACTGATCCAACTCCTTCCGTGAAGAATCAAGTAACATGACAAATGCTAACCTAACT
CATTCTGTGAAGAATCAAAACAAAATGCCAATGCCGAGCTACCTCATTATATGATAAAATCGAAC
AAAAT
Found at i:737485 original size:23 final size:23
Alignment explanation
Indices: 737459--737502 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
737449 ACATTCACAC
* *
737459 GACTCAACTGCGTATACCACCGA
1 GACTCAACTACATATACCACCGA
737482 GACTCAACTACATATACCACC
1 GACTCAACTACATATACCACC
737503 AGGCTACAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.34, C:0.36, G:0.11, T:0.18
Consensus pattern (23 bp):
GACTCAACTACATATACCACCGA
Found at i:748453 original size:32 final size:32
Alignment explanation
Indices: 748408--748471 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
748398 AAGAACTTTC
*
748408 TAATTGTCGAGACTTCAAAAATATTCTAAGGG
1 TAATTGTCAAGACTTCAAAAATATTCTAAGGG
748440 TAATTGTCAAGACTTCAAAAATATTCTAAGGG
1 TAATTGTCAAGACTTCAAAAATATTCTAAGGG
748472 ACACTCCTCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.31
Consensus pattern (32 bp):
TAATTGTCAAGACTTCAAAAATATTCTAAGGG
Found at i:754158 original size:21 final size:21
Alignment explanation
Indices: 754134--754192 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
754124 TCGCGTAGAA
* * * *
754134 ATGTCTCGAATGACCATATAT
1 ATGTCCCGAAGGACCACATAG
*
754155 ATGTCCCAAAGGACCACATAG
1 ATGTCCCGAAGGACCACATAG
754176 ATGTCCCGAAGGACCAC
1 ATGTCCCGAAGGACCAC
754193 TCCTTAAGGA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.20
Consensus pattern (21 bp):
ATGTCCCGAAGGACCACATAG
Found at i:754281 original size:42 final size:42
Alignment explanation
Indices: 754204--754293 Score: 108
Period size: 42 Copynumber: 2.1 Consensus size: 42
754194 CCTTAAGGAT
* *
754204 CACATATATATTCCAAAGGACCAAATATTTGTCCCGAAGAAC
1 CACATATATATTCCAAAGGACCAAATATATATCCCGAAGAAC
* * ** * *
754246 CGCATATATGTTCCAAAGGATTACATATATATCCCGAAGGAC
1 CACATATATATTCCAAAGGACCAAATATATATCCCGAAGAAC
754288 CACATA
1 CACATA
754294 AAACCCTCGA
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.24
Consensus pattern (42 bp):
CACATATATATTCCAAAGGACCAAATATATATCCCGAAGAAC
Found at i:754292 original size:21 final size:21
Alignment explanation
Indices: 754198--754293 Score: 75
Period size: 21 Copynumber: 4.6 Consensus size: 21
754188 ACCACTCCTT
* *
754198 AAGGATCACATATATATTCCA
1 AAGGACCACATATATATCCCA
* * * *
754219 AAGGACCAAATATTTGTCCCG
1 AAGGACCACATATATATCCCA
* * * *
754240 AAGAACCGCATATATGTTCCA
1 AAGGACCACATATATATCCCA
** *
754261 AAGGATTACATATATATCCCG
1 AAGGACCACATATATATCCCA
754282 AAGGACCACATA
1 AAGGACCACATA
754294 AAACCCTCGA
Statistics
Matches: 54, Mismatches: 21, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
21 54 1.00
ACGTcount: A:0.40, C:0.22, G:0.15, T:0.24
Consensus pattern (21 bp):
AAGGACCACATATATATCCCA
Found at i:758169 original size:4 final size:4
Alignment explanation
Indices: 758160--760344 Score: 3818
Period size: 4 Copynumber: 549.2 Consensus size: 4
758150 CATGTAACAA
* * * * *
758160 ATAC ATAC ATAC GTAC ATAC GTAC ATAC GTAC ATAC GTAC ATAC GTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
758208 ATAC GTAC ATAC GTAC ATAC GTAC ATAC GTAC ATAC GTAC ATAC CTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
758256 ATAC CTAC ATAC CTAC ATAC CTAC ATAC CTAC ATAC CTAC ATAC CTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
758304 ATAC ATAC ATAC CTAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
758352 AAAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC CTAC ATAC ATAC CTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
758400 ATAC CTAC ATAC ATAC CTAC ATAC CTAC CTAC CTAC ATAC CTAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
758448 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
758496 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
758544 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
758592 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * * *
758640 GTAC GTAC ATAC GTAC GTAC ATAC GTAC GTAC ATAC GTAC GTAC GTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * * *
758688 GTAT GTAC GTAC GTGC GTGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
758736 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
758784 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
758832 CTAC ATAC CTAC ATAC CTAC ATAC CTAC ATAC CTAC ATAC CTAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
758880 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
758928 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
758976 ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-- ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
759022 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
759070 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
759118 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
759166 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
759214 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
759262 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
759310 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
759358 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
759406 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
759454 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
759502 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
759548 ATAC ATAC ATAC AT-- ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
759594 ATAC AT-- ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
759640 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
759688 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
759736 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
759784 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
759832 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
759880 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
759928 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
759974 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
760020 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
760068 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
760116 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
760164 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
760212 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
760260 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
760308 ATAC ATAC ATAC ATAC ATAC ATAT ATAC ATAC ATAC A
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A
760345 ATTATTTACA
Statistics
Matches: 2091, Mismatches: 78, Indels: 24
0.95 0.04 0.01
Matches are distributed among these distances:
2 12 0.01
4 2079 0.99
ACGTcount: A:0.48, C:0.26, G:0.01, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:760660 original size:21 final size:21
Alignment explanation
Indices: 760634--760689 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
760624 CTTAGAAATA
* *
760634 TCCCGAATGACCACATATATG
1 TCCCGAAAGACCACATAGATG
760655 TCCCGAAAGACCACATAGATG
1 TCCCGAAAGACCACATAGATG
760676 TCCC-AAAGGACCAC
1 TCCCGAAA-GACCAC
760690 TCCTTAAGGA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 3 0.09
21 29 0.91
ACGTcount: A:0.36, C:0.32, G:0.16, T:0.16
Consensus pattern (21 bp):
TCCCGAAAGACCACATAGATG
Found at i:764794 original size:15 final size:15
Alignment explanation
Indices: 764774--764803 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
764764 TGTATCATAA
*
764774 TATATATATATATAT
1 TATATACATATATAT
764789 TATATACATATATAT
1 TATATACATATATAT
764804 AGCTCGCTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (15 bp):
TATATACATATATAT
Found at i:764877 original size:2 final size:2
Alignment explanation
Indices: 764870--764941 Score: 144
Period size: 2 Copynumber: 36.0 Consensus size: 2
764860 TTTTATACTT
764870 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
764912 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
764942 GTGTGTACAT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 70 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:774158 original size:42 final size:41
Alignment explanation
Indices: 774111--774202 Score: 105
Period size: 42 Copynumber: 2.2 Consensus size: 41
774101 AATTGGTAAG
* *
774111 TCCTTCGGGCCATCAG-TAAGTCTTTCGAGCATGATGATTAAA
1 TCCTTCGGGCCATCAGTTAA-TCTTTCGAGAAAGATGA-TAAA
* * * *
774153 TCCTTCTGGTCATCTGTTAATCTTTCGAGAAAGATGATAAG
1 TCCTTCGGGCCATCAGTTAATCTTTCGAGAAAGATGATAAA
774194 TCCTTCGGG
1 TCCTTCGGG
774203 TAATCTATAA
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
41 11 0.26
42 28 0.67
43 3 0.07
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.34
Consensus pattern (41 bp):
TCCTTCGGGCCATCAGTTAATCTTTCGAGAAAGATGATAAA
Found at i:774311 original size:260 final size:259
Alignment explanation
Indices: 773858--774621 Score: 1038
Period size: 260 Copynumber: 2.9 Consensus size: 259
773848 AAGTCATTTC
773858 GACCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTTGGGTCATCTGTCAGTCTTTCGAGA
1 GACCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTT-GGTCATCTGTCAGTCTTTCGAGA
* *** * * * * * * *
773923 AAGATAAT-AGTCATTTAAGCCATCTATAAGGCCTTTGAGCATGATGATTTGACATGATTTTCGA
65 AAGATGATAAGTCATTCGGGTCATCTATAAGACCTTCGAGCAAGATGTTTTCACATGATTTTTG-
*
773987 AAAAAAATGAGAAAGTGGTTTTCAAAGTTTCTCATTTAATATTTTCAGAAAAT-AAAATTTTTGA
129 AAAAAAATGAGAAAGTGATTTTCAAAGTTTCTCATTTAATATTTTCAGAAAATGAAAA-TTTTGA
*
774051 AAAGTAAGAAAGCGATTTCCAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTT
193 AAAGTAAGAAAGCGATTTACAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTT
774116 CG
258 CG
* * * *
774118 GGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCTGGTCATCTGTTAATCTTTCGAGA
1 GACCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTT-TGGTCATCTGTCAGTCTTTCGAGA
* * * *
774183 AAGATGATAAGTCCTTCGGGTAATCTATAAGACCTTCGGGCAGGATGTTTTCACATGATTTTTGA
65 AAGATGATAAGTCATTCGGGTCATCTATAAGACCTTCGAGCAAGATGTTTTCACATGATTTTTGA
* * * *
774248 AAAAAATGATAAATTGCTTTTCAAAGTTTCTTATTTAATATTTTCAGAAAATGAAAATTTTGAAA
130 AAAAAATGAGAAAGTGATTTTCAAAGTTTCTCATTTAATATTTTCAGAAAATGAAAATTTTGAAA
774313 AGTAAGAAAGCGATTTACAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCG
195 AGTAAGAAAGCGATTTACAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCG
* *
774378 GACCATCAATAACTCTTTCGAGCATGTTGATT-AATCCTTTGAGTCATCTGTCAGTCTTTCGAAG
1 GACCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTTG-GTCATCTGTCAGTCTTTCG-AG
** * * * *
774442 CGAGATGATAATTCATTCGGGTCGTCCATAAGACCTTC-ATGCAAGATATTTTCACATGA-TTTT
64 AAAGATGATAAGTCATTCGGGTCATCTATAAGACCTTCGA-GCAAGATGTTTTCACATGATTTTT
* * * * * * *
774505 -CAAAATATAAGAAAGCGATTTTCAAAGTTTCTCATTTAGTATTTT-ATAAAAATGAAATTTTTG
128 GAAAAAAATGAGAAAGTGATTTTCAAAGTTTCTCATTTAATATTTTCA-GAAAATGAAAATTTTG
*
774568 AAAAGTAAGAAAGCAATTTACAAAGTTTCTTACCTAGTAAACTATTTCCAAAAT
192 AAAAGTAAGAAAGCGATTTACAAAGTTTCTTACCTAGTAAACTATTTCCAAAAT
774622 CAGTAACTCT
Statistics
Matches: 446, Mismatches: 51, Indels: 16
0.87 0.10 0.03
Matches are distributed among these distances:
257 1 0.00
258 105 0.24
259 28 0.06
260 265 0.59
261 47 0.11
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (259 bp):
GACCATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTTGGTCATCTGTCAGTCTTTCGAGAA
AGATGATAAGTCATTCGGGTCATCTATAAGACCTTCGAGCAAGATGTTTTCACATGATTTTTGAA
AAAAATGAGAAAGTGATTTTCAAAGTTTCTCATTTAATATTTTCAGAAAATGAAAATTTTGAAAA
GTAAGAAAGCGATTTACAAAGTTTCTTACCTAGTAAACTATTTCCAAAATTGGTAAGTCCTTCG
Found at i:774806 original size:3 final size:3
Alignment explanation
Indices: 774800--774826 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
774790 TATGTTGTTG
774800 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
774827 CAAGTTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:779848 original size:13 final size:13
Alignment explanation
Indices: 779830--779854 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
779820 ACAGACGCGC
779830 ATATGAAGACTGG
1 ATATGAAGACTGG
779843 ATATGAAGACTG
1 ATATGAAGACTG
779855 TTCAACTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.28, T:0.24
Consensus pattern (13 bp):
ATATGAAGACTGG
Found at i:789032 original size:16 final size:16
Alignment explanation
Indices: 789011--789056 Score: 83
Period size: 16 Copynumber: 2.9 Consensus size: 16
789001 GAGGCTTAGA
789011 GAGAATGGAGAGAGTT
1 GAGAATGGAGAGAGTT
789027 GAGAATGGAGAGAGTT
1 GAGAATGGAGAGAGTT
*
789043 GAGAATGAAGAGAG
1 GAGAATGGAGAGAG
789057 ATAGTGGAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.41, C:0.00, G:0.43, T:0.15
Consensus pattern (16 bp):
GAGAATGGAGAGAGTT
Found at i:791641 original size:21 final size:22
Alignment explanation
Indices: 791616--791659 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
791606 ATAATCATTT
*
791616 TTACTAACTTGA-TTCTTTTTG
1 TTACTAACTTGATTTCCTTTTG
791637 TTACTAACTTGATTTCCTTTTG
1 TTACTAACTTGATTTCCTTTTG
791659 T
1 T
791660 CTTGTCTTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.18, C:0.16, G:0.09, T:0.57
Consensus pattern (22 bp):
TTACTAACTTGATTTCCTTTTG
Found at i:793378 original size:11 final size:11
Alignment explanation
Indices: 793354--793393 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
793344 AATCAATGCG
793354 AGAATAAAGAAA
1 AGAA-AAAGAAA
*
793366 AGAAAAAGGAA
1 AGAAAAAGAAA
793377 AGAAAAAGATAA
1 AGAAAAAGA-AA
793389 AGAAA
1 AGAAA
793394 GAAAACCGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 14 0.56
12 11 0.44
ACGTcount: A:0.75, C:0.00, G:0.20, T:0.05
Consensus pattern (11 bp):
AGAAAAAGAAA
Found at i:793380 original size:16 final size:15
Alignment explanation
Indices: 793359--793398 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
793349 ATGCGAGAAT
793359 AAAGAAAAGAAAAAGG
1 AAAGAAAAGAAAAA-G
*
793375 AAAGAAAAAGATAAAG
1 AAAG-AAAAGAAAAAG
793391 AAAGAAAA
1 AAAGAAAA
793399 CCGATCAAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 4 0.18
16 9 0.41
17 9 0.41
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.03
Consensus pattern (15 bp):
AAAGAAAAGAAAAAG
Found at i:797018 original size:118 final size:118
Alignment explanation
Indices: 796827--797637 Score: 1052
Period size: 118 Copynumber: 6.9 Consensus size: 118
796817 TTTGTTCAAA
*
796827 TCCATCACAAAATGAGGTGGATTAACATTTCCCATGGGAGAGTTCATAATGAGAAGAACTCATCC
1 TCCATCACAAAATGAGGTGGATTAACATTTCCAATGGGAGAGTTCATAATGAGAAGAACTCATCC
*
796892 AATGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTGGTTCGAT
66 GATGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTGGTTCGAT
** * * * * *
796945 TTTATCACAGAAGGAGGTGGATTAATATTTCCCATGAGAGAGTTCATAATGAGAAGAACTCATCC
1 TCCATCACAAAATGAGGTGGATTAACATTTCCAATGGGAGAGTTCATAATGAGAAGAACTCATCC
* * * * **
797010 AATGAGGGAGAAGAATTTCATAATGAGAATAACTTGTTCAAACTTTATTCGAT
66 GATGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTGGTTCGAT
* * *
797063 TCCATCACAAAAAGAGGTGGATTAACATTTCCAATGGGAGAGTTCAAAATAAGAAGAACTCATCC
1 TCCATCACAAAATGAGGTGGATTAACATTTCCAATGGGAGAGTTCATAATGAGAAGAACTCATCC
* * * **
797128 GATGAGGGAGAAGAAGTTCATAATGAGAGGAGCTTGTTCAAACTTTATTCGAT
66 GATGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTGGTTCGAT
* *
797181 TCCATCACAAAAAGAGATGGATTAACATTTCCAATGGGAGAGTTCATAATGAGAAGAACTCATCC
1 TCCATCACAAAATGAGGTGGATTAACATTTCCAATGGGAGAGTTCATAATGAGAAGAACTCATCC
*
797246 GATGAGGGAGAAGAAGATCATAATGAGAAGAACTTGTTCAACCTTGGTTCGAT
66 GATGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTGGTTCGAT
* * * * * *
797299 TCCATCACAGAATGAGGTGGATCAACATTTCTAGT-GGAGATTTCATAATGAAAAGAACTCATCC
1 TCCATCACAAAATGAGGTGGATTAACATTTCCAATGGGAGAGTTCATAATGAGAAGAACTCATCC
* * * * **
797363 GATGAGGAAGAAGATGTTCATAATGAGAAGAACTTGTTCAGCCTTGGATAAAT
66 GATGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTGGTTCGAT
* * * * * ** *
797416 TCCATGACAGAATGAGGTGGATCAATATTTCCAGT-GGAGAGTTCATAATGAGAAGAACTTGTTC
1 TCCATCACAAAATGAGGTGGATTAACATTTCCAATGGGAGAGTTCATAATGAGAAGAACTCATCC
* *
797480 GATGAGGGAGAATAAGTTCATAATGAGAAGAACTTGTTCAACCTTAGTTCGAT
66 GATGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTGGTTCGAT
* * * * * * * * *
797533 TCCATCATATAAGGAAGTGGATCAACATTTCCAAT-AGAAAGTTCAAAATGAGAAGAACTCGTCC
1 TCCATCACAAAATGAGGTGGATTAACATTTCCAATGGGAGAGTTCATAATGAGAAGAACTCATCC
* * * *
797597 AATGAAGGAGAAGATGTTCGTAATGAGAAGAACTTGTTCAA
66 GATGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAA
797638 ACACTTTTCT
Statistics
Matches: 611, Mismatches: 82, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
117 262 0.43
118 349 0.57
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.26
Consensus pattern (118 bp):
TCCATCACAAAATGAGGTGGATTAACATTTCCAATGGGAGAGTTCATAATGAGAAGAACTCATCC
GATGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTGGTTCGAT
Found at i:797518 original size:20 final size:20
Alignment explanation
Indices: 797456--797519 Score: 62
Period size: 20 Copynumber: 3.2 Consensus size: 20
797446 CCAGTGGAGA
797456 GTTCATAATGAGAAGAACTT
1 GTTCATAATGAGAAGAACTT
* * *
797476 GTTC--GATGAGGGAGAA-TAA
1 GTTCATAATGA-GAAGAACT-T
797495 GTTCATAATGAGAAGAACTT
1 GTTCATAATGAGAAGAACTT
797515 GTTCA
1 GTTCA
797520 ACCTTAGTTC
Statistics
Matches: 33, Mismatches: 6, Indels: 10
0.67 0.12 0.20
Matches are distributed among these distances:
18 5 0.15
19 9 0.27
20 14 0.42
21 5 0.15
ACGTcount: A:0.38, C:0.09, G:0.25, T:0.28
Consensus pattern (20 bp):
GTTCATAATGAGAAGAACTT
Found at i:799545 original size:30 final size:32
Alignment explanation
Indices: 799504--799568 Score: 80
Period size: 35 Copynumber: 2.0 Consensus size: 32
799494 CAAAGAAAAT
799504 ATGTCTTAACT-C-TAATTCCTAATAAAATAA
1 ATGTCTTAACTACTTAATTCCTAATAAAATAA
*
799534 ATGTTTTAACTCAAACTTAATTCCTAATAAAATAA
1 ATGTCTTAACT---ACTTAATTCCTAATAAAATAA
799569 TAAATCTAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
30 10 0.34
34 1 0.03
35 18 0.62
ACGTcount: A:0.45, C:0.15, G:0.03, T:0.37
Consensus pattern (32 bp):
ATGTCTTAACTACTTAATTCCTAATAAAATAA
Found at i:800565 original size:21 final size:21
Alignment explanation
Indices: 800539--800581 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
800529 CCTTTTCTTA
800539 CCCAGGGGAAACAGATTCCCC
1 CCCAGGGGAAACAGATTCCCC
** *
800560 CCCAGGGGGTACCGATTCCCC
1 CCCAGGGGAAACAGATTCCCC
800581 C
1 C
800582 TGTCTAACGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.42, G:0.26, T:0.12
Consensus pattern (21 bp):
CCCAGGGGAAACAGATTCCCC
Found at i:800993 original size:32 final size:33
Alignment explanation
Indices: 800928--800997 Score: 97
Period size: 34 Copynumber: 2.1 Consensus size: 33
800918 TTTTGTAAAG
*
800928 GGGAAAGGTTCTAGCTTATCCCGTGTAAAAGCTA
1 GGGAAAGGTTCTAGCTTAACCCG-GTAAAAGCTA
* *
800962 GGGAAATGTTCTAGTTTAACCC-GTAAAAGCTA
1 GGGAAAGGTTCTAGCTTAACCCGGTAAAAGCTA
800994 GGGA
1 GGGA
800998 GTTGTAAGGT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 14 0.42
34 19 0.58
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (33 bp):
GGGAAAGGTTCTAGCTTAACCCGGTAAAAGCTA
Found at i:804349 original size:30 final size:30
Alignment explanation
Indices: 804312--804383 Score: 76
Period size: 29 Copynumber: 2.4 Consensus size: 30
804302 ATTATACCAG
*
804312 AGACCACCCAACTAT-AATTCATTTTCATTT
1 AGACCACCCAACTATGAATTC-TTTTCAATT
* ** *
804342 CGACCA-CCATTTTTGAATTCTTTTCAATT
1 AGACCACCCAACTATGAATTCTTTTCAATT
804371 AGACCACCCAACT
1 AGACCACCCAACT
804384 GTTTAAATGT
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
29 18 0.56
30 14 0.44
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.35
Consensus pattern (30 bp):
AGACCACCCAACTATGAATTCTTTTCAATT
Found at i:805148 original size:45 final size:45
Alignment explanation
Indices: 805087--805195 Score: 128
Period size: 45 Copynumber: 2.4 Consensus size: 45
805077 AAATTGATAT
* ** *
805087 TTTTAAAATAGTTGAAATACTATTCGACCCTGATTGAGTTAAAATA
1 TTTT-AAATAGTTGAAATAATATTCGACCCCAATCGAGTTAAAATA
* * *
805133 TTTTAAATTGTTGAAATAATATTTGACCCCAATCGAGTTAAACTA
1 TTTTAAATAGTTGAAATAATATTCGACCCCAATCGAGTTAAAATA
* *
805178 TTTTAAATATTTAAAATA
1 TTTTAAATAGTTGAAATA
805196 GTCTAATATT
Statistics
Matches: 53, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
45 49 0.92
46 4 0.08
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.39
Consensus pattern (45 bp):
TTTTAAATAGTTGAAATAATATTCGACCCCAATCGAGTTAAAATA
Found at i:805338 original size:17 final size:17
Alignment explanation
Indices: 805312--805345 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
805302 AGTCGAATAT
805312 TATTTCAACTATTTAAA
1 TATTTCAACTATTTAAA
*
805329 TATTTTAACTATTTAAA
1 TATTTCAACTATTTAAA
805346 AATAGTTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (17 bp):
TATTTCAACTATTTAAA
Found at i:805345 original size:124 final size:127
Alignment explanation
Indices: 805205--805459 Score: 338
Period size: 124 Copynumber: 2.0 Consensus size: 127
805195 AGTCTAATAT
*
805205 TATTTCAACTATTTAAAAATAATTTAACTCGATCCGTATCAAATATTATTTCAACTA-TTATAAA
1 TATTTCAACTATTTAAAAATAATTTAACTCGATCCGGATCAAATATTATTTCAACTATTTA-AAA
* *
805269 TATTTTAA-TCAATCTGTATAGAATAAATTAAATAGTCGAATATTATTTCAACTA-TTT-AAA
65 TATTTTAACTCAATCTGGATAGAATAAATTAAATAGTCGAATATTATTTAAACTATTTTAAAA
* * * * *
805329 TATTTTAACTATTTAAAAATAGTTTAACTTGATCCGGGTCGAATATTATTTCAACTATTTAAAAT
1 TATTTCAACTATTTAAAAATAATTTAACTCGATCCGGATCAAATATTATTTCAACTATTTAAAAT
* ** ** **
805394 ATTTTAACTCAATTTGGATCTAATAAATTAAATTTTTTAATATTATTTAAACTATTTTAAAA
66 ATTTTAACTCAATCTGGATAGAATAAATTAAATAGTCGAATATTATTTAAACTATTTTAAAA
805456 TATT
1 TATT
805460 AATTTATTCG
Statistics
Matches: 112, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
124 62 0.55
125 40 0.36
126 3 0.03
127 7 0.06
ACGTcount: A:0.41, C:0.10, G:0.05, T:0.44
Consensus pattern (127 bp):
TATTTCAACTATTTAAAAATAATTTAACTCGATCCGGATCAAATATTATTTCAACTATTTAAAAT
ATTTTAACTCAATCTGGATAGAATAAATTAAATAGTCGAATATTATTTAAACTATTTTAAAA
Found at i:805354 original size:19 final size:17
Alignment explanation
Indices: 805318--805357 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 17
805308 ATATTATTTC
*
805318 AACTATTTAAATATTTT
1 AACTATTTAAATAGTTT
805335 AACTATTTAAAAATAGTTT
1 AACTATTT--AAATAGTTT
805354 AACT
1 AACT
805358 TGATCCGGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 8 0.40
19 12 0.60
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.45
Consensus pattern (17 bp):
AACTATTTAAATAGTTT
Found at i:813275 original size:39 final size:38
Alignment explanation
Indices: 813166--813286 Score: 113
Period size: 39 Copynumber: 3.1 Consensus size: 38
813156 TTAAATGTTT
* * * *
813166 ATTTTTAATTT-TCAAATTATTTCATCCTAACATGCTAA
1 ATTTTCAATTTCTTAAATTATTTCA-CATAACATTCTAA
* *
813204 A-TTCCTAATTTCTTAAATTTTGTTGC-CATAACATTCTAA
1 ATTTTC-AATTTCTTAAATTAT-TT-CACATAACATTCTAA
*
813243 ATTTTCAATTTCTTAAATTATTTCACATTAACATTCTAC
1 ATTTTCAATTTCTTAAATTATTTCACA-TAACATTCTAA
813282 ATTTT
1 ATTTT
813287 TTTTTAAAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 13
0.75 0.10 0.15
Matches are distributed among these distances:
37 3 0.04
38 10 0.15
39 48 0.72
40 5 0.07
41 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.02, T:0.49
Consensus pattern (38 bp):
ATTTTCAATTTCTTAAATTATTTCACATAACATTCTAA
Found at i:814164 original size:4 final size:4
Alignment explanation
Indices: 814157--814275 Score: 238
Period size: 4 Copynumber: 29.8 Consensus size: 4
814147 TATAAACTAT
814157 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
814205 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
814253 ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATA
814276 TATATATATA
Statistics
Matches: 115, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 115 1.00
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:814328 original size:22 final size:20
Alignment explanation
Indices: 814276--814329 Score: 56
Period size: 20 Copynumber: 2.5 Consensus size: 20
814266 TACATACATA
814276 TATATATATATTATATTGTTT
1 TATATATA-ATTATATTGTTT
*
814297 TA-ATCTTAATTATATATGTGTT
1 TATAT-ATAATTATAT-TGT-TT
814319 TATATATAATT
1 TATATATAATT
814330 TTTTATTACA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
20 9 0.33
21 7 0.26
22 9 0.33
23 2 0.07
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.57
Consensus pattern (20 bp):
TATATATAATTATATTGTTT
Found at i:819123 original size:24 final size:24
Alignment explanation
Indices: 819096--819150 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 24
819086 TATTTGTTCT
819096 TGAGTTGTGCAAACAATTTTCTTG
1 TGAGTTGTGCAAACAATTTTCTTG
*
819120 TGAGTTTTTGCAAACAATTTTCTTG
1 TGAG-TTGTGCAAACAATTTTCTTG
*
819145 AGAGTT
1 TGAGTT
819151 TTCTCTACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 6 0.21
25 22 0.79
ACGTcount: A:0.25, C:0.11, G:0.20, T:0.44
Consensus pattern (24 bp):
TGAGTTGTGCAAACAATTTTCTTG
Found at i:819163 original size:24 final size:25
Alignment explanation
Indices: 819103--819152 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
819093 TCTTGAGTTG
*
819103 TGCAAACAATTTTCTTGTGAGTTTT
1 TGCAAACAATTTTCTTGAGAGTTTT
819128 TGCAAACAATTTTCTTGAGAGTTTT
1 TGCAAACAATTTTCTTGAGAGTTTT
819153 CTCTACAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.26, C:0.12, G:0.16, T:0.46
Consensus pattern (25 bp):
TGCAAACAATTTTCTTGAGAGTTTT
Found at i:820542 original size:3 final size:3
Alignment explanation
Indices: 820527--820605 Score: 149
Period size: 3 Copynumber: 26.3 Consensus size: 3
820517 CAAAGACAAA
*
820527 TTC TTC TTT TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
820575 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
820606 CAATTTCCAT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 74 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:822785 original size:23 final size:21
Alignment explanation
Indices: 822759--822808 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 21
822749 ATTCCTAATT
822759 TAAAATA-AAAATTATTCAAAAAA
1 TAAAATACAAAA-TA-TC-AAAAA
822782 TAAAATATCAAAATATCAAAAA
1 TAAAATA-CAAAATATCAAAAA
822804 TAAAA
1 TAAAA
822809 AATTAAATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
22 10 0.40
23 9 0.36
24 2 0.08
25 4 0.16
ACGTcount: A:0.70, C:0.06, G:0.00, T:0.24
Consensus pattern (21 bp):
TAAAATACAAAATATCAAAAA
Found at i:822999 original size:23 final size:23
Alignment explanation
Indices: 822973--823067 Score: 63
Period size: 23 Copynumber: 4.1 Consensus size: 23
822963 ATAATTGAAC
*
822973 TAAATAAATATTATAAAATATTA
1 TAAAAAAATATTATAAAATATTA
*
822996 TAAAAAGAAAATT-TAAAAT-TTA
1 TAAAAA-AATATTATAAAATATTA
* * * *
823018 TGCATAAAGTATAATAAAATA-TA
1 T-AAAAAAATATTATAAAATATTA
823041 TAATTAAAAATATTA-AAAATAGTTA
1 TAA--AAAAATATTATAAAATA-TTA
823066 TA
1 TA
823068 CAATGAAAAA
Statistics
Matches: 53, Mismatches: 11, Indels: 14
0.68 0.14 0.18
Matches are distributed among these distances:
22 8 0.15
23 29 0.55
24 12 0.23
25 4 0.08
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.35
Consensus pattern (23 bp):
TAAAAAAATATTATAAAATATTA
Found at i:829537 original size:101 final size:101
Alignment explanation
Indices: 829450--829837 Score: 478
Period size: 103 Copynumber: 3.8 Consensus size: 101
829440 AACATTATAA
* *
829450 TTATAAACTTATTTTGTCTTACTTTTGCATAATATAAAA-GGTTTCAAACATATAATGTAAATAG
1 TTATAAACATGTTTTGTCTTACTTTTGCATAATA-AAAATGGTTTCAAACATATAATGTAAATAG
* ** * *
829514 TTGGCAATTAAAAAATGTACTACCTATAATGTTATATC
65 TTGGCAATTAAAAAAGGCGCAACCTATAATGTTA-AAC
* *
829552 TT-TAAACATGTTTTGTCTTACTTTTGCATAATAAAAATGGTTTCAAAGATATAACT-TAAATGG
1 TTATAAACATGTTTTGTCTTACTTTTGCATAATAAAAATGGTTTCAAACATATAA-TGTAAATAG
829615 TTGGCAATTAAAAAGAGGCGCAACCTATAATGTTAAAC
65 TTGGCAATTAAAAA-AGGCGCAACCTATAATGTTAAAC
* * * * *
829653 TTATAAACTTGTTTTGTCTTACTTTTTTCACAATAAAAATGGTTTCAAACATATAATGTAAACAA
1 TTATAAACATGTTTTGTCTTAC-TTTTGCATAATAAAAATGGTTTCAAACATATAATGTAAATAG
* * *
829718 TTGACAATTTAAAAAAGGCGCAACATAGAATGTTAAAC
65 TTGGCAA-TTAAAAAAGGCGCAACCTATAATGTTAAAC
* * * *
829756 TTATAAACATGTTTTGTCTAACTTTTTCATAATATAAATGTTTTCAAACATATAATGTAAAT-GA
1 TTATAAACATGTTTTGTCTTACTTTTGCATAATAAAAATGGTTTCAAACATATAATGTAAATAG-
829820 TTGGCAATTTTAAAAAAG
65 TTGGCAA--TTAAAAAAG
829838 TATGGATACT
Statistics
Matches: 250, Mismatches: 27, Indels: 17
0.85 0.09 0.06
Matches are distributed among these distances:
100 4 0.02
101 68 0.27
102 80 0.32
103 91 0.36
104 7 0.03
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.38
Consensus pattern (101 bp):
TTATAAACATGTTTTGTCTTACTTTTGCATAATAAAAATGGTTTCAAACATATAATGTAAATAGT
TGGCAATTAAAAAAGGCGCAACCTATAATGTTAAAC
Found at i:829803 original size:205 final size:203
Alignment explanation
Indices: 829450--829828 Score: 521
Period size: 205 Copynumber: 1.9 Consensus size: 203
829440 AACATTATAA
* * *
829450 TTATAAACTTATTTTGTCTTACTTTTGCATAATATAAAAGGTTTCAAACATATAATGTAAATAGT
1 TTATAAACTTATTTTGTCTTACTTTTGCACAATATAAAAGGTTTCAAACATATAATGTAAACAAT
* * * * * * * *
829515 TGGCAATTAAAAAATGTACTACCTATAATGTTATATCTTTAAACATGTTTTGTCTTACTTTTGCA
66 TGACAATTAAAAAAGGCACAACATAGAATGTTATAACTTTAAACATGTTTTGTCTAACTTTTGCA
* *
829580 TAATAAAAATGGTTTCAAAGATATAACT-TAAATGGTTGGCAATTAAAAAGAGGCGCAACCTATA
131 TAATAAAAATGGTTTCAAACATATAA-TGTAAATGATTGGCAATTAAAAAGAGGCGCAACCTATA
829644 ATGTTAAAC
195 ATGTTAAAC
* *
829653 TTATAAACTTGTTTTGTCTTACTTTTTTCACAATA-AAAATGGTTTCAAACATATAATGTAAACA
1 TTATAAACTTATTTTGTCTTAC-TTTTGCACAATATAAAA-GGTTTCAAACATATAATGTAAACA
*
829717 ATTGACAATTTAAAAAAGGCGCAACATAGAATGTTA-AACTTATAAACATGTTTTGTCTAACTTT
64 ATTGACAA-TTAAAAAAGGCACAACATAGAATGTTATAACTT-TAAACATGTTTTGTCTAACTTT
* * *
829781 TTCATAATATAAATGTTTTCAAACATATAATGTAAATGATTGGCAATT
127 TGCATAATAAAAATGGTTTCAAACATATAATGTAAATGATTGGCAATT
829829 TTAAAAAAGT
Statistics
Matches: 152, Mismatches: 19, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
203 25 0.16
204 44 0.29
205 83 0.55
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.38
Consensus pattern (203 bp):
TTATAAACTTATTTTGTCTTACTTTTGCACAATATAAAAGGTTTCAAACATATAATGTAAACAAT
TGACAATTAAAAAAGGCACAACATAGAATGTTATAACTTTAAACATGTTTTGTCTAACTTTTGCA
TAATAAAAATGGTTTCAAACATATAATGTAAATGATTGGCAATTAAAAAGAGGCGCAACCTATAA
TGTTAAAC
Found at i:836005 original size:21 final size:21
Alignment explanation
Indices: 835949--836008 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 21
835939 TATTTGGCAG
* *
835949 AGGGAATCGATACCCAC-ATA
1 AGGGAATCGATACCCCCTGTA
* * *
835969 AGGGAACCAATTCCCCCTGTA
1 AGGGAATCGATACCCCCTGTA
*
835990 GGGGAATCGATACCCCCTG
1 AGGGAATCGATACCCCCTG
836009 GGGTTCTGGT
Statistics
Matches: 30, Mismatches: 9, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
20 13 0.43
21 17 0.57
ACGTcount: A:0.30, C:0.30, G:0.23, T:0.17
Consensus pattern (21 bp):
AGGGAATCGATACCCCCTGTA
Found at i:837565 original size:18 final size:18
Alignment explanation
Indices: 837539--837584 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
837529 GAACCAGAAT
*
837539 AGCACGAGGAACAAGCACG
1 AGCA-GAGGAACAAGCACA
837558 AGCAGAGGAACAAGCACA
1 AGCAGAGGAACAAGCACA
*
837576 ACCAGAGGA
1 AGCAGAGGA
837585 TCAAATGCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 21 0.84
19 4 0.16
ACGTcount: A:0.46, C:0.24, G:0.30, T:0.00
Consensus pattern (18 bp):
AGCAGAGGAACAAGCACA
Found at i:838682 original size:19 final size:19
Alignment explanation
Indices: 838658--838706 Score: 82
Period size: 18 Copynumber: 2.6 Consensus size: 19
838648 AAGAGGGAAC
*
838658 CGATTCCCCCCAGGGGTAT
1 CGATTCCCCCCAGGAGTAT
838677 CGATT-CCCCCAGGAGTAT
1 CGATTCCCCCCAGGAGTAT
838695 CGATTCCCCCCA
1 CGATTCCCCCCA
838707 CTGTTCAACG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
18 17 0.61
19 11 0.39
ACGTcount: A:0.18, C:0.41, G:0.20, T:0.20
Consensus pattern (19 bp):
CGATTCCCCCCAGGAGTAT
Found at i:839501 original size:20 final size:20
Alignment explanation
Indices: 839473--839510 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
839463 GGTTGTTTCT
839473 AGCCGTTGGGGATGATTTGG
1 AGCCGTTGGGGATGATTTGG
* *
839493 AGCCTTTGGGGATTATTT
1 AGCCGTTGGGGATGATTT
839511 TTCTGTAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.16, C:0.11, G:0.37, T:0.37
Consensus pattern (20 bp):
AGCCGTTGGGGATGATTTGG
Found at i:843003 original size:68 final size:69
Alignment explanation
Indices: 842844--843008 Score: 188
Period size: 68 Copynumber: 2.4 Consensus size: 69
842834 GAAAATGTGG
* * * * * * * *
842844 ATATTTTTAGAAAAATATCGATACTTTCGAATTAAAATACATGGAAAATGAGAAGGTTACAAAGG
1 ATATTTTTACAAAAGTATCCATACTTTTGAATTAAAATAAATGAAAAATGAAAAAGTTACAAAGG
*
842909 ATGA
66 ATCA
* * ** *
842913 ATACTTTTCCAAAAGTATCCATACTTTTGAATTAAAA-AAATGAAAAATGAAAAAGTTTTAAAGT
1 ATATTTTTACAAAAGTATCCATACTTTTGAATTAAAATAAATGAAAAATGAAAAAGTTACAAAGG
842977 ATCA
66 ATCA
*
842981 ATATTTTTTCAAAAGTATCCATACTTTT
1 ATATTTTTACAAAAGTATCCATACTTTT
843009 AAACTCAAAA
Statistics
Matches: 80, Mismatches: 16, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
68 49 0.61
69 31 0.39
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.34
Consensus pattern (69 bp):
ATATTTTTACAAAAGTATCCATACTTTTGAATTAAAATAAATGAAAAATGAAAAAGTTACAAAGG
ATCA
Found at i:843312 original size:26 final size:27
Alignment explanation
Indices: 843263--843314 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
843253 TTACAAAATT
843263 AAATATAATAAATAATATTATTATTTG
1 AAATATAATAAATAATATTATTATTTG
*
843290 AAATATTA-AAATAAT-TTATTTATTT
1 AAATATAATAAATAATATTA-TTATTT
843315 ATTTATTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 3 0.13
26 13 0.57
27 7 0.30
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (27 bp):
AAATATAATAAATAATATTATTATTTG
Found at i:843625 original size:29 final size:29
Alignment explanation
Indices: 843593--843686 Score: 79
Period size: 29 Copynumber: 3.2 Consensus size: 29
843583 AAATTTTATC
843593 AATAATTTATTATATATTATTAAAATGA-A
1 AATAATTTATTATATATTATTAAAAT-ATA
* *
843622 AAT-ATTATATCT-TATATTATTATAATATT
1 AATAATT-TAT-TATATATTATTAAAATATA
*
843651 AATAATATTA-TATTATATTATTATAAATATT
1 AATAAT-TTATTA-TATATTATTA-AAATATA
843682 AATAA
1 AATAA
843687 ATATATTTTA
Statistics
Matches: 54, Mismatches: 3, Indels: 14
0.76 0.04 0.20
Matches are distributed among these distances:
28 5 0.09
29 22 0.41
30 15 0.28
31 12 0.22
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (29 bp):
AATAATTTATTATATATTATTAAAATATA
Found at i:843667 original size:22 final size:22
Alignment explanation
Indices: 843639--843682 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
843629 TATCTTATAT
843639 TATTATAATATTA-ATAATATTA
1 TATTATAATATTATA-AATATTA
*
843661 TATTATATTATTATAAATATTA
1 TATTATAATATTATAAATATTA
843683 ATAAATATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 19 0.95
23 1 0.05
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
TATTATAATATTATAAATATTA
Found at i:844080 original size:77 final size:75
Alignment explanation
Indices: 843988--844161 Score: 206
Period size: 77 Copynumber: 2.3 Consensus size: 75
843978 CTTATTTATA
* *
843988 AGTGAACCATAACATTCTTGTGCGAAACTCATTTTACTAATAAAAATATTAACA-TTCAATATCA
1 AGTGAACCATGACATTCTTGTGC--AACCCATTTTACTAATAAAAATATTAACATTTC-ATATCA
844052 CAACCTATTTCTT
63 CAACCTATTTCTT
* * * * *
844065 GGTGAATCATGACATTTTTTGGTGCAACCCATTTTATTAATAAAAATATTAACATTTCATATCGC
1 AGTGAACCATGACA-TTCTT-GTGCAACCCATTTTACTAATAAAAATATTAACATTTCATATCAC
* *
844130 AATCTGTTTCTT
64 AACCTATTTCTT
*
844142 AGTTAACCATGACATTCTTG
1 AGTGAACCATGACATTCTTG
844162 GATGTAATTG
Statistics
Matches: 81, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
75 1 0.01
76 4 0.05
77 65 0.80
78 7 0.09
79 4 0.05
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (75 bp):
AGTGAACCATGACATTCTTGTGCAACCCATTTTACTAATAAAAATATTAACATTTCATATCACAA
CCTATTTCTT
Found at i:844723 original size:21 final size:21
Alignment explanation
Indices: 844697--844749 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
844687 CACTTAGGGA
844697 ACCGATTCCCCATGAGGCGGT
1 ACCGATTCCCCATGAGGCGGT
*
844718 ACCGATTCCCCATGAGGGGGT
1 ACCGATTCCCCATGAGGCGGT
844739 ACCGATTCCCC
1 ACCGATTCCCC
844750 CCACGCTCCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.19, C:0.36, G:0.26, T:0.19
Consensus pattern (21 bp):
ACCGATTCCCCATGAGGCGGT
Found at i:851707 original size:21 final size:21
Alignment explanation
Indices: 851681--851731 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
851671 GGAGAGAACC
851681 GATTCCCCCCAAGGGGATACT
1 GATTCCCCCCAAGGGGATACT
851702 GATTCCCCCCAAGGGGATACT
1 GATTCCCCCCAAGGGGATACT
851723 GATTCCCCC
1 GATTCCCCC
851732 TATTTAACGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.22, C:0.37, G:0.22, T:0.20
Consensus pattern (21 bp):
GATTCCCCCCAAGGGGATACT
Found at i:854257 original size:2 final size:2
Alignment explanation
Indices: 854252--854280 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
854242 ATTATTCTTA
854252 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
854281 ATTATCTTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:854341 original size:2 final size:2
Alignment explanation
Indices: 854334--854365 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
854324 ATTCTATCGT
854334 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
854366 CTTTTAATTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:854476 original size:15 final size:15
Alignment explanation
Indices: 854456--854487 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
854446 ATATATTTCA
*
854456 TTTTATCTTTTATTT
1 TTTTATCTTCTATTT
854471 TTTTATCTTCTATTT
1 TTTTATCTTCTATTT
854486 TT
1 TT
854488 ATTTTTGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.12, C:0.09, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTATCTTCTATTT
Found at i:854504 original size:20 final size:20
Alignment explanation
Indices: 854457--854510 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 20
854447 TATATTTCAT
*
854457 TTTATCTTTTATTTTTTTATC
1 TTTAT-TTTTATTTTTGTATC
854478 TTCTATTTTTATTTTTGTAT-
1 TT-TATTTTTATTTTTGTATC
*
854498 TGTTATTGTTATT
1 T-TTATTTTTATT
854511 ATCTTCTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
20 10 0.34
21 16 0.55
22 3 0.10
ACGTcount: A:0.15, C:0.06, G:0.06, T:0.74
Consensus pattern (20 bp):
TTTATTTTTATTTTTGTATC
Found at i:854552 original size:14 final size:15
Alignment explanation
Indices: 854382--854555 Score: 62
Period size: 14 Copynumber: 11.3 Consensus size: 15
854372 ATTCTTTTTC
854382 ATATATCATTATTATTT
1 ATATAT-ATT-TTATTT
854399 ATATAT-TTTTA-TT
1 ATATATATTTTATTT
*
854412 ACTATA-ATTATATGTT
1 A-TATATATTTTAT-TT
854428 ATATATATTTATTATTT
1 ATATATA-TT-TTATTT
*
854445 -TATATATTTCATTTT
1 ATATATATTTTA-TTT
* *
854460 ATCTTTTATTTT-TTT
1 AT-ATATATTTTATTT
* *
854475 ATCTTCTATTTTTATTT
1 AT-ATATA-TTTTATTT
*
854492 -T-TGTATTGTTATTGT
1 ATATATATT-TTATT-T
*
854507 -TATTATCTTCTTTATTT
1 ATA-TAT-AT-TTTATTT
*
854524 -TATGTATTTTATTT
1 ATATATATTTTATTT
854538 ATATATATTTT-TTT
1 ATATATATTTTATTT
854552 ATAT
1 ATAT
854556 TTGTTTTTGT
Statistics
Matches: 125, Mismatches: 13, Indels: 41
0.70 0.07 0.23
Matches are distributed among these distances:
13 5 0.04
14 35 0.28
15 33 0.26
16 18 0.14
17 24 0.19
18 9 0.07
19 1 0.01
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.67
Consensus pattern (15 bp):
ATATATATTTTATTT
Found at i:854553 original size:32 final size:32
Alignment explanation
Indices: 854483--854559 Score: 88
Period size: 32 Copynumber: 2.4 Consensus size: 32
854473 TTATCTTCTA
854483 TTTTTATTTTTGTATTGTTATTGTTATTATCT
1 TTTTTATTTTTGTATTGTTATTGTTATTATCT
*
854515 TCTTTATTTTATGTATT-TTATT-TATATATAT-T
1 TTTTTATTTT-TGTATTGTTATTGT-TAT-TATCT
*
854547 TTTTTATATTTGT
1 TTTTTATTTTTGT
854560 TTTTGTGCGT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
31 4 0.10
32 26 0.67
33 9 0.23
ACGTcount: A:0.19, C:0.03, G:0.06, T:0.71
Consensus pattern (32 bp):
TTTTTATTTTTGTATTGTTATTGTTATTATCT
Found at i:867850 original size:16 final size:15
Alignment explanation
Indices: 867813--867886 Score: 60
Period size: 16 Copynumber: 4.7 Consensus size: 15
867803 ATTCTTTTTC
*
867813 ATATATCATTATTATTT
1 ATATAT-ATTTTTA-TT
867830 ATATATATTTTTATT
1 ATATATATTTTTATT
* *
867845 ACTATA-ATTATATGTT
1 A-TATATATT-TTTATT
867861 ATATATATTTATTATT
1 ATATATATTT-TTATT
*
867877 TTATATATTT
1 ATATATATTT
867887 CATTTTATCT
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
15 11 0.23
16 30 0.64
17 6 0.13
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (15 bp):
ATATATATTTTTATT
Found at i:867909 original size:15 final size:15
Alignment explanation
Indices: 867889--867920 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
867879 ATATATTTCA
*
867889 TTTTATCTTTTATTT
1 TTTTATCTTCTATTT
867904 TTTTATCTTCTATTT
1 TTTTATCTTCTATTT
867919 TT
1 TT
867921 ATTTTTGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.12, C:0.09, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTATCTTCTATTT
Found at i:867937 original size:20 final size:20
Alignment explanation
Indices: 867890--867943 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 20
867880 TATATTTCAT
*
867890 TTTATCTTTTATTTTTTTATC
1 TTTAT-TTTTATTTTTGTATC
867911 TTCTATTTTTATTTTTGTAT-
1 TT-TATTTTTATTTTTGTATC
*
867931 TGTTATTGTTATT
1 T-TTATTTTTATT
867944 ATCTTCTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
20 10 0.34
21 16 0.55
22 3 0.10
ACGTcount: A:0.15, C:0.06, G:0.06, T:0.74
Consensus pattern (20 bp):
TTTATTTTTATTTTTGTATC
Found at i:867987 original size:33 final size:32
Alignment explanation
Indices: 867916--867993 Score: 88
Period size: 32 Copynumber: 2.4 Consensus size: 32
867906 TTATCTTCTA
*
867916 TTTTTATTTTTGTATTGTTATTGTTATTATCT
1 TTTTTATTTTTGTATTGTTATTGTTATTATAT
*
867948 TCTTTATTTTATGTATT-TTATT-TATATATATAT
1 TTTTTATTTT-TGTATTGTTATTGT-TAT-TATAT
*
867981 TTTTTATATTTGT
1 TTTTTATTTTTGT
867994 TTTTGTGCCT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
31 1 0.03
32 20 0.51
33 18 0.46
ACGTcount: A:0.21, C:0.03, G:0.06, T:0.71
Consensus pattern (32 bp):
TTTTTATTTTTGTATTGTTATTGTTATTATAT
Found at i:873822 original size:25 final size:25
Alignment explanation
Indices: 873773--873823 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
873763 CAGCTCGTAT
* * *
873773 AAATTGCACCGAAGTGCCGCGTAGA
1 AAATAGCACCGAAGTGCCACATAGA
873798 AAATAGCACCGAAGTGCCACATAGA
1 AAATAGCACCGAAGTGCCACATAGA
873823 A
1 A
873824 TGTCCCAAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.39, C:0.24, G:0.24, T:0.14
Consensus pattern (25 bp):
AAATAGCACCGAAGTGCCACATAGA
Found at i:873896 original size:23 final size:23
Alignment explanation
Indices: 873806--873914 Score: 62
Period size: 23 Copynumber: 4.8 Consensus size: 23
873796 GAAAATAGCA
*
873806 CCGAAGTG-CCACATAGAA-TGTC
1 CCGAA-TGACCACGTAGAATTGTC
* * * * * *
873828 CCAAAGGACCACATGGTATTGTT
1 CCGAATGACCACGTAGAATTGTC
* *
873851 CCGAATGA-CAGCGTAAAAATGTC
1 CCGAATGACCA-CGTAGAATTGTC
873874 CCGAATGACCACGTAGAATTGTC
1 CCGAATGACCACGTAGAATTGTC
** * *
873897 TTGAAGGACCGCGTAGAA
1 CCGAATGACCACGTAGAA
873915 CCTTCGACTC
Statistics
Matches: 64, Mismatches: 19, Indels: 7
0.71 0.21 0.08
Matches are distributed among these distances:
21 1 0.02
22 14 0.22
23 47 0.73
24 2 0.03
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.20
Consensus pattern (23 bp):
CCGAATGACCACGTAGAATTGTC
Found at i:878955 original size:23 final size:23
Alignment explanation
Indices: 878855--878947 Score: 107
Period size: 23 Copynumber: 4.1 Consensus size: 23
878845 CACTGAAGTG
878855 CCACATAGAA-TGTCCCGAAGGA
1 CCACATAGAATTGTCCCGAAGGA
* *
878877 CCACATAGTATTGTCTCGAAGGA
1 CCACATAGAATTGTCCCGAAGGA
* * * *
878900 CCGCATAAAAATATCCCGAAGGA
1 CCACATAGAATTGTCCCGAAGGA
* *
878923 CCACGTAGAATTGTCCCGAATGA
1 CCACATAGAATTGTCCCGAAGGA
878946 CC
1 CC
878948 GCGTAGAACC
Statistics
Matches: 56, Mismatches: 14, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
22 9 0.16
23 47 0.84
ACGTcount: A:0.34, C:0.27, G:0.20, T:0.18
Consensus pattern (23 bp):
CCACATAGAATTGTCCCGAAGGA
Found at i:884993 original size:81 final size:81
Alignment explanation
Indices: 884858--885013 Score: 294
Period size: 81 Copynumber: 1.9 Consensus size: 81
884848 TCCATCCTCC
884858 ACTAACTGCAACAGCTAGAATAATAATATTCATCTATATTGTAATGATTTTAGCAAGGGCTCAAT
1 ACTAACTGCAACAGCTAGAATAATAATATTCATCTATATTGTAATGATTTTAGCAAGGGCTCAAT
*
884923 TTATATATATATATAT
66 ATATATATATATATAT
*
884939 ACTAACTGCAACAGCTAGCATAATAATATTCATCTATATTGTAATGATTTTAGCAAGGGCTCAAT
1 ACTAACTGCAACAGCTAGAATAATAATATTCATCTATATTGTAATGATTTTAGCAAGGGCTCAAT
885004 ATATATATAT
66 ATATATATAT
885014 TGAAAACAAA
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
81 73 1.00
ACGTcount: A:0.39, C:0.13, G:0.12, T:0.36
Consensus pattern (81 bp):
ACTAACTGCAACAGCTAGAATAATAATATTCATCTATATTGTAATGATTTTAGCAAGGGCTCAAT
ATATATATATATATAT
Found at i:890820 original size:134 final size:134
Alignment explanation
Indices: 890317--891227 Score: 960
Period size: 134 Copynumber: 6.8 Consensus size: 134
890307 GCTGTCACTC
* * * * *
890317 AGGGAATATAAGATCT--GGGATGTTGATTCATTCAGCTGTCACTCAGTGAAGATTGAATCGGGG
1 AGGGAATATCAGATCTGGGGGA-GTTGATCCATTCCGCTGTCACTCAGGGAAGATTGAATCGGGA
* * *
890380 CAGACTTGTTCCGCTGTCACTCAAGGAATATCAAATCATGGGAAAGAGGGACATGTTCTGCTTTC
65 CAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGGAAAAGAGGGACATGTTCTGCTTTC
*
890445 TCTAA
130 TCTGA
* * * * *
890450 AGGGAATATCATATCCTGGGGGAGTTGATCCATTCCGTTGTCACTCAAGTAAAATTGAATCAGGG
1 AGGGAATATCAGAT-CTGGGGGAGTTGATCCATTCCGCTGTCACTCAGGGAAGATTGAATC-GGG
* * * * * * *
890515 A-AAACGTT-TTTCGCTGTCACTCAGGGAATATCAAATCTTGGAAAATAGAGACTTGTTATGTTT
64 ACAGAC-TTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGGAAAAGAGGGACATGTTCTGCTT
890578 TCTCTGA
128 TCTCTGA
* * * *
890585 AGGGAATATCAGATCCGGGGGGAAGTTGATCCATTCCTCTGTCACTTAGAGAAGATTGAATCGGG
1 AGGGAATATCAGAT-CTGGGGG-AGTTGATCCATTCCGCTGTCACTCAGGGAAGATTGAATCGGG
* * * * *
890650 GCAAACTTGTTCCGCTGTCACTTAGGGAATATCAAGTCTTGGAAAAGAGGGACTTGTTCTGCTTT
64 ACAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGGAAAAGAGGGACATGTTCTGCTTT
*
890715 CTTTGA
129 CTCTGA
* * * * * * * *
890721 AGTGAATATCAGATTTGGGGGTGTTGATCCATTCCGCTGTCACTTAGGGAAGACTGAATTGTGAT
1 AGGGAATATCAGATCTGGGGGAGTTGATCCATTCCGCTGTCACTCAGGGAAGATTGAATCGGGAC
* * * * ** * *
890786 AGACTTCTTCTGATGTCACTCAGGGAATATCAAGTCTTGGAAAAGATAGATATGTTCCGCTTTCT
66 AGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGGAAAAGAGGGACATGTTCTGCTTTCT
890851 CTGA
131 CTGA
* * * * * *
890855 AGGGAATATCATAACCGGGGGGAGTTGATCCATTCAGTTGTCACTCAGGGAAGATTGAATCGGGG
1 AGGGAATATCA-GATCTGGGGGAGTTGATCCATTCCGCTGTCACTCAGGGAAGATTGAATCGGGA
* *
890920 CAGACTTGTTCTGCTTTCACTCAGGGAATATCAAATCTTGGAAAAGAGGGACATGTT-TCGCTTT
65 CAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGGAAAAGAGGGACATGTTCT-GCTTT
890984 CTCTGA
129 CTCTGA
* * * * * * *
890990 AGGGAATATCAGATAT-AGGGATATTGATCCATTCCACTATTACTCA-GGAATGATTGAATCATG
1 AGGGAATATCAGATCTGGGGGA-GTTGATCCATTCCGCTGTCACTCAGGGAA-GATTGAATC-GG
* * * ** * **
891053 GA-AGACTTGTTCTGCTGTTACTCAGAGAATATTC-GGTCTTGGAAAAGAAGGACATGTTCCACT
63 GACAGACTTGTTCCGCTGTCACTCAGGGAATA-TCAAATCTTGGAAAAGAGGGACATGTTCTGCT
891116 TTCTCTGA
127 TTCTCTGA
*
891124 AGGGAATATCAGATCTGGGGGAGTTGATCCATTCCGCTGTCACTCAGGGAAGATTGAATC-AGAG
1 AGGGAATATCAGATCTGGGGGAGTTGATCCATTCCGCTGTCACTCAGGGAAGATTGAATCGGGA-
* * * *
891188 TAGACTTGTTCCGTTCTCACTAAGGGAATATCAAATCTTG
65 CAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTG
891228 AAAGAGATAT
Statistics
Matches: 639, Mismatches: 119, Indels: 39
0.80 0.15 0.05
Matches are distributed among these distances:
132 2 0.00
133 22 0.03
134 263 0.41
135 240 0.38
136 112 0.18
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (134 bp):
AGGGAATATCAGATCTGGGGGAGTTGATCCATTCCGCTGTCACTCAGGGAAGATTGAATCGGGAC
AGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGGAAAAGAGGGACATGTTCTGCTTTCT
CTGA
Found at i:890985 original size:269 final size:265
Alignment explanation
Indices: 890333--891227 Score: 1044
Period size: 269 Copynumber: 3.3 Consensus size: 265
890323 TATAAGATCT
* *
890333 GGGATGTTGATTCATTCAGCTGTCACTCAGTGAAGATTGAATCGGGGCAGACTTGTTCCGCTGTC
1 GGGA-GTTGATCCATTCAGCTGTCACTCAGGGAAGATTGAATCGGGGCAGACTTGTTCCGCTGTC
* * * * *
890398 ACTCAAGGAATATCAAATCATGGGAAAGAGGGACATGTTCTGCTTTCTCTAAAGGGAATATCATA
65 ACTCAGGGAATATCAAATCTTGGAAAAGAGGGACATGTTCTGCTTTCTCTGAAGGGAATATCAGA
* * * * * * * *
890463 TCCTGGGGGAGTTGATCCATTCCGTTGTCACTCAAGTAAAATTGAATCAGGGAAAACGTTTTTC-
130 T-ATGGGGGTGTTGATCCATTCCGCTGTCACTC-AGGAAGATTGAATC-TGGAAGAC-TTCTTCT
* * ** *
890527 GCTGTCACTCAGGGAATATCAAATCTTGGAAAATAGAGACT-TGTTATGTTTTCTCTGAAGGGAA
191 GCTGTCACTCAGGGAATATCAAGTCTTGGAAAAGA-AGA-TATGTTCCGCTTTCTCTGAAGGGAA
*
890591 TATCAGATCCGGG
254 TATCA-AACCGGG
** * * *
890604 GGGAAGTTGATCCATTCCTCTGTCACTTAGAGAAGATTGAATCGGGGCAAACTTGTTCCGCTGTC
1 GGG-AGTTGATCCATTCAGCTGTCACTCAGGGAAGATTGAATCGGGGCAGACTTGTTCCGCTGTC
* * * * *
890669 ACTTAGGGAATATCAAGTCTTGGAAAAGAGGGACTTGTTCTGCTTTCTTTGAAGTGAATATCAGA
65 ACTCAGGGAATATCAAATCTTGGAAAAGAGGGACATGTTCTGCTTTCTCTGAAGGGAATATCAGA
* * *
890734 TTTGGGGGTGTTGATCCATTCCGCTGTCACTTAGGGAAGACTGAAT-TGTGATAGACTTCTTCTG
130 TATGGGGGTGTTGATCCATTCCGCTGTCACTCA-GGAAGATTGAATCTG-GA-AGACTTCTTCTG
*
890798 ATGTCACTCAGGGAATATCAAGTCTTGGAAAAGATAGATATGTTCCGCTTTCTCTGAAGGGAATA
192 CTGTCACTCAGGGAATATCAAGTCTTGGAAAAGA-AGATATGTTCCGCTTTCTCTGAAGGGAATA
890863 TCATAACCGGG
256 TCA-AACCGGG
* * *
890874 GGGAGTTGATCCATTCAGTTGTCACTCAGGGAAGATTGAATCGGGGCAGACTTGTTCTGCTTTCA
1 GGGAGTTGATCCATTCAGCTGTCACTCAGGGAAGATTGAATCGGGGCAGACTTGTTCCGCTGTCA
890939 CTCAGGGAATATCAAATCTTGGAAAAGAGGGACATGTT-TCGCTTTCTCTGAAGGGAATATCAGA
66 CTCAGGGAATATCAAATCTTGGAAAAGAGGGACATGTTCT-GCTTTCTCTGAAGGGAATATCAGA
* * * * * * *
891003 TATAGGGATATTGATCCATTCCACTATTACTCAGGAATGATTGAATCATGGAAGACTTGTTCTGC
130 TATGGGGGTGTTGATCCATTCCGCTGTCACTCAGGAA-GATTGAATC-TGGAAGACTTCTTCTGC
* * * * *
891068 TGTTACTCAGAGAATATTC-GGTCTTGGAAAAGAAGGACATGTTCCACTTTCTCTGAAGGGAATA
193 TGTCACTCAGGGAATA-TCAAGTCTTGGAAAAGAA-GATATGTTCCGCTTTCTCTGAAGGGAATA
* * *
891132 TCAGATCTGG
256 TCAAACCGGG
* * * * * *
891142 GGGAGTTGATCCATTCCGCTGTCACTCAGGGAAGATTGAATCAGAGTAGACTTGTTCCGTTCTCA
1 GGGAGTTGATCCATTCAGCTGTCACTCAGGGAAGATTGAATCGGGGCAGACTTGTTCCGCTGTCA
*
891207 CTAAGGGAATATCAAATCTTG
66 CTCAGGGAATATCAAATCTTG
891228 AAAGAGATAT
Statistics
Matches: 536, Mismatches: 76, Indels: 27
0.84 0.12 0.04
Matches are distributed among these distances:
268 88 0.16
269 220 0.41
270 112 0.21
271 115 0.21
272 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (265 bp):
GGGAGTTGATCCATTCAGCTGTCACTCAGGGAAGATTGAATCGGGGCAGACTTGTTCCGCTGTCA
CTCAGGGAATATCAAATCTTGGAAAAGAGGGACATGTTCTGCTTTCTCTGAAGGGAATATCAGAT
ATGGGGGTGTTGATCCATTCCGCTGTCACTCAGGAAGATTGAATCTGGAAGACTTCTTCTGCTGT
CACTCAGGGAATATCAAGTCTTGGAAAAGAAGATATGTTCCGCTTTCTCTGAAGGGAATATCAAA
CCGGG
Found at i:896664 original size:12 final size:12
Alignment explanation
Indices: 896647--896673 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
896637 TTTAGTGGTT
896647 AATCCAAATGCA
1 AATCCAAATGCA
896659 AATCCAAATGCA
1 AATCCAAATGCA
896671 AAT
1 AAT
896674 AAAAGTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.22, G:0.07, T:0.19
Consensus pattern (12 bp):
AATCCAAATGCA
Found at i:901031 original size:24 final size:25
Alignment explanation
Indices: 901001--901059 Score: 66
Period size: 29 Copynumber: 2.2 Consensus size: 25
900991 CTTATGCCCG
*
901001 TTTTTTC-AGTTTAGTGTCTAATGT
1 TTTTTTCTAGTTTAGTGTCTAACGT
901025 TTTTTTCATTATAGTTTAGTGTCTAACGT
1 TTTTTTC----TAGTTTAGTGTCTAACGT
901054 TTTTTT
1 TTTTTT
901060 TTATTCCAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
24 7 0.24
29 22 0.76
ACGTcount: A:0.17, C:0.08, G:0.14, T:0.61
Consensus pattern (25 bp):
TTTTTTCTAGTTTAGTGTCTAACGT
Found at i:901071 original size:30 final size:30
Alignment explanation
Indices: 901007--901085 Score: 97
Period size: 30 Copynumber: 2.7 Consensus size: 30
900997 CCCGTTTTTT
901007 CAGTTTAGTGTCTAATG-TTTTTTTCATTA
1 CAGTTTAGTGTCTAATGTTTTTTTTCATTA
* * * *
901036 TAGTTTAGTGTCTAACGTTTTTTTTTATTC
1 CAGTTTAGTGTCTAATGTTTTTTTTCATTA
* *
901066 CAGTTTGGTGCCTAATGTTT
1 CAGTTTAGTGTCTAATGTTT
901086 CATTCCGTAA
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
29 15 0.37
30 26 0.63
ACGTcount: A:0.18, C:0.11, G:0.16, T:0.54
Consensus pattern (30 bp):
CAGTTTAGTGTCTAATGTTTTTTTTCATTA
Found at i:908198 original size:20 final size:20
Alignment explanation
Indices: 908162--908199 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
908152 ATCTTATTCC
**
908162 CTGGTAATCTTTTATTCCCA
1 CTGGTAATCTTACATTCCCA
908182 CTGGTAATCTTACATTCC
1 CTGGTAATCTTACATTCC
908200 GTGAACCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (20 bp):
CTGGTAATCTTACATTCCCA
Found at i:911873 original size:43 final size:42
Alignment explanation
Indices: 911782--911882 Score: 123
Period size: 43 Copynumber: 2.4 Consensus size: 42
911772 ACAGAACCTC
* *
911782 ACTTTTTGCGGCATTTTTAAAAAAACATCGCTAAATAATCTT
1 ACTTTTTGCGGCATTTATAAAAAAACATCGCTAAATAATCTG
* * *
911824 AATTTTTGTGGCGTTTATATAAAAAACATCGCTAAATAGAT-TG
1 ACTTTTTGCGGCATTTATA-AAAAAACATCGCTAAATA-ATCTG
*
911867 ACTTTTTGCGGTATTT
1 ACTTTTTGCGGCATTT
911883 GTGAACATAA
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
42 15 0.31
43 31 0.65
44 2 0.04
ACGTcount: A:0.33, C:0.13, G:0.14, T:0.41
Consensus pattern (42 bp):
ACTTTTTGCGGCATTTATAAAAAAACATCGCTAAATAATCTG
Found at i:915208 original size:28 final size:28
Alignment explanation
Indices: 915174--915227 Score: 83
Period size: 28 Copynumber: 1.9 Consensus size: 28
915164 CGGTGTCTGG
*
915174 TATATTTACC-GATCTAACACCGGTAGAT
1 TATATTT-CCTGATCTAACACCCGTAGAT
915202 TATATTTCCTGATCTAACACCCGTAG
1 TATATTTCCTGATCTAACACCCGTAG
915228 CAGTAAAGCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 2 0.08
28 22 0.92
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.33
Consensus pattern (28 bp):
TATATTTCCTGATCTAACACCCGTAGAT
Found at i:915580 original size:17 final size:18
Alignment explanation
Indices: 915544--915584 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
915534 ATATTATGTA
*
915544 TTTAATTTATTTAAGCAT
1 TTTACTTTATTTAAGCAT
*
915562 TTTACTTTATTTAA-TAT
1 TTTACTTTATTTAAGCAT
915579 TTTACT
1 TTTACT
915585 AATATAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.61
Consensus pattern (18 bp):
TTTACTTTATTTAAGCAT
Found at i:918786 original size:972 final size:969
Alignment explanation
Indices: 916652--920213 Score: 5647
Period size: 965 Copynumber: 3.7 Consensus size: 969
916642 TGAATGAGTG
* * * * *
916652 TCATATTGTATTGATGACGTTAGGGCGGTGATCCCACCTGAGTTGGGGGGGCCATCAGATGTTTG
1 TCATATTGTACTGATGATGTGAGGGCGGTGATCCCACCTGAGTTGAGGGGCCCATCAGATGTTTG
* *
916717 GATGGCGATGGTCCCTCTGATCTGTTATGCGACCATCGAGTGGCACTTTACTAATCACGTGCTTC
66 GATGGCGATGGTCCCTCTGATCTGTTATGCGACCGTCGAGTGGCACTTTACTAATCACGTGCTCC
*
916782 GGCAGTTTGGTTGTTTTCAACCAATTCCGGAAGCACCTCGCAATATGGACGAGTTGTATAGCTTA
131 GGCAGTTTGGTTGTTTTCAACCAATTCCGGAAGCACCTCGCAATATGGACGAGTTGCATAGCTTA
* * *
916847 GATAGATGCGGCAAGACAGATACAGATTGGCTAGTGAGGCATCATGAGTGGGTCGTGTTGTGGGA
196 GATAGACGCGGCAAGACAGATACAGATTGGCTGGTGAGGCATCATGAGTGGGTCGTGTTATGGGA
916912 GGATCGACATCGGCGCCTTCCCCGTAGAGAGCCCATTTTTATGACCTCTTGATGGTTGCTGACGG
261 GGATCGACATCGGCGCCTTCCCCGTAGAGAGCCCATTTTTATGACCTCTTGATGGTTGCTGACGG
*
916977 TTATTATGAGTGGTTCAACAGTAACGGGAAACCGTTTTTGCTTCCCGAGGATGCACGAGGACAGA
326 TTATTATGAGTGGTTCAACAGTAACGGGAAACCGTTTCTGCTTCCCGAGGATGCACGAGGACAGA
* * * * *
917042 CATTTTCGTGACGTCGACAGAGACGTTCACCGACAAAACATCATCGTCCCCCGACTCGTGGACGG
391 CATTTCCGCGACGTCGACAGAGACGTTCACCGACACAGCACCATCGTCCCCCGACTCGTGGACGG
* * *
917107 AGAGTAAGTGCTTCCGGTTCATCCTCAGCTGCACCAGCAGGAACTTCATAGCAGCCACCGTAGCC
456 AGAGCAAGTGCTTCCGGTTCATCCTCAGCTGCACCAGCAGGAACTTCACAGCAGCCACCGCAGCC
* * * *
917172 ATTTATGATACGGTCGCCTTTCCATTACCAGATGACGTCGCCGCCTTCACCTGGTTTTATGACCC
521 ATTTATGATACCGCCGCCTTTCCATTACCAGATGCCGCCGCCGCCTTCACCTGGTTTTATGACCC
* * *
917237 CGCCGCCGCCACCGTCACAGATGACCCCTCCTGGAGGCTATTTATGGGTCTATGTTTGTAGATCA
586 CGCCGCCACCACCGTCACAGATGACCCCTCCTGGAGGCTA-TTATGGGTCTATGTTTGCAGATCT
*
917302 GACTTGGGGTTCATATACTGGATATCTGGCGGGTTCAGCCTCATCACCCATGGCCGTAGCACAGA
650 GACTTGGGGTTCATATACTGGATATCTGGCGGGTTCAGCCTCATCACCCATGGCCGCAGCACAGA
* *
917367 CACCTCCTGTACAGTTTTCACACTCAGTGATGTATGAGTTTTATGAGTTTTTCCAGTTTTCGCAG
715 CACCTCCTGTACAGTTTTCACACTCAGTGATGTCTGAGTTTTATGAGTTTTCCCAGTTTTCGCAG
* *
917432 GCCGGTGGGATATTCAATCATACACCTCCAGGGTCCTTATTTTATGGTCACCGAGATGAGGTATA
780 GCCGGTGGGATATTCAGTCATACACCTCCAGGGTCCTTATTTTATGGTCACCGAGATGAGGCATA
*
917497 TCCGCAAATTCTAGCCCGTACATTGCACC---ATCAGCTTCATACATGTGTGCAGGAGGGTCAGT
845 TCCGCAAATTCTGGCCCGTACATTGCACCATAATCAGCTTCATACATGTGTGCAGGAGGGTCAGT
* * *
917559 TTGTGCCACATTTCCTGGTTCTTCATCATCATCAGAGTTGAATTGCGGTGAATCTAGGAT
910 TTGTGCCACATTTCCAGGTTCTTCATCATCATCAGAGTTGAATTGCGGTGAATCTGGGGT
* *
917619 TCATATTGCACTGATGATGTGAGAGCGGTGATCCCACCTGAGTTGAGGGGCCCATCAGATGTTTG
1 TCATATTGTACTGATGATGTGAGGGCGGTGATCCCACCTGAGTTGAGGGGCCCATCAGATGTTTG
* * * *
917684 GATGGCGATGGTCCCTCTGATTTATTATGTGACCGTCGAGTGGAACTTTACTAATCACGTGCTCC
66 GATGGCGATGGTCCCTCTGATCTGTTATGCGACCGTCGAGTGGCACTTTACTAATCACGTGCTCC
* * *
917749 GGCAGTTTGGTTGTTTTCAACCAATTTCGGAAGTACCTCACAATATGGACGAGTTGCATAGCTTA
131 GGCAGTTTGGTTGTTTTCAACCAATTCCGGAAGCACCTCGCAATATGGACGAGTTGCATAGCTTA
917814 GATAGACGCGGCAAGACAGATACAGATTGGCTGGTGAGGCATCATGAGTGGGTCGTGTTATGGGA
196 GATAGACGCGGCAAGACAGATACAGATTGGCTGGTGAGGCATCATGAGTGGGTCGTGTTATGGGA
* * *
917879 GGATCAACATCGGCGCCTTTCCCGTAGAGAGCGCATTTTTTATGACCTCTTGATGGTTGCTGACG
261 GGATCGACATCGGCGCCTTCCCCGTAGAGAGCCCA-TTTTTATGACCTCTTGATGGTTGCTGACG
*
917944 GTTATTATGAGTGGTTCAACAGTAACGGGAAACCGTTTCTGCTTCTCGAGGATGCACGAGGACAG
325 GTTATTATGAGTGGTTCAACAGTAACGGGAAACCGTTTCTGCTTCCCGAGGATGCACGAGGACAG
* * * * * *
918009 ACATTTCCACGAAGTCGATAGAGACATTCACCGACACAGCACTATGGTCCCCCGACTCGTGGACG
390 ACATTTCCGCGACGTCGACAGAGACGTTCACCGACACAGCACCATCGTCCCCCGACTCGTGGACG
* *
918074 GAGAGCAAGTGCTTCCTGTTCATCCTCAGTTGCACCAGCAGGAACTTCACAGCAGCCACCGCAGC
455 GAGAGCAAGTGCTTCCGGTTCATCCTCAGCTGCACCAGCAGGAACTTCACAGCAGCCACCGCAGC
* *
918139 CATTTATGATGCCGCCGCCTTTCTATTACCAGATGCCGCCGCCGCCGCCTTCACCTGG-TTTATG
520 CATTTATGATACCGCCGCCTTTCCATTACCAGAT---GCCGCCGCCGCCTTCACCTGGTTTTATG
* *
918203 ACCACGCCGCCACCACCGTCACAGATGACCCCTCCTGGAGGCTATTATGGGTCTATATTTGCAGA
582 ACCCCGCCGCCACCACCGTCACAGATGACCCCTCCTGGAGGCTATTATGGGTCTATGTTTGCAGA
* * * *
918268 TCCGACTTGGGGTTCATATACTGGATATCTGGCGGGTTCAG-CTATATCACCAATGGCCGCAACA
647 TCTGACTTGGGGTTCATATACTGGATATCTGGCGGGTTCAGCCT-CATCACCCATGGCCGCAGCA
* *
918332 CAGACACCTCCTGTACAGTTTTCATACTCAGCGATGTCTGAGTTTTATGAGTTTTCCCAGTTTTC
711 CAGACACCTCCTGTACAGTTTTCACACTCAGTGATGTCTGAGTTTTATGAGTTTTCCCAGTTTTC
* *
918397 GCAGGCCGGTGGGATATTCAGTCATACACCTCTAGGGTCCTTATTTTATAGTCACCGAGATGAGG
776 GCAGGCCGGTGGGATATTCAGTCATACACCTCCAGGGTCCTTATTTTATGGTCACCGAGATGAGG
*
918462 CATATCCGCAAATTCTGGCTCGTACATTGCACCATAATCAGCTTCATACATGTGTGCAGGAGGGT
841 CATATCCGCAAATTCTGGCCCGTACATTGCACCATAATCAGCTTCATACATGTGTGCAGGAGGGT
** * * *
918527 CAGTTTGTGCCACATTTCCAGGAACTTCATCATCATCAGAGTTGAATTGCGATGATTATGGGGT
906 CAGTTTGTGCCACATTTCCAGGTTCTTCATCATCATCAGAGTTGAATTGCGGTGAATCTGGGGT
918591 TCATATTGTACTGATGATGTGAGGGCGGTGATCCCACCTGAGTTGAGGGGCCCATCAGATGTTTG
1 TCATATTGTACTGATGATGTGAGGGCGGTGATCCCACCTGAGTTGAGGGGCCCATCAGATGTTTG
* *
918656 GATGGCGATGGTCCCTCTGATCTGTTATGCGACCGTTGAGTGGCACTTTACTAATCACGTGCTCT
66 GATGGCGATGGTCCCTCTGATCTGTTATGCGACCGTCGAGTGGCACTTTACTAATCACGTGCTCC
* * * *
918721 GACAGTTTTGTTGTTTTCAACTAATTCCGGAAGCACCTCGCAATATGGACAAGTTGCATAGCTTA
131 GGCAGTTTGGTTGTTTTCAACCAATTCCGGAAGCACCTCGCAATATGGACGAGTTGCATAGCTTA
* *
918786 GATAGACGCGGCAAGACATATACAGATTGGCTGGTGAGGCATCATGAGTGGGTCGTGTTATAGGA
196 GATAGACGCGGCAAGACAGATACAGATTGGCTGGTGAGGCATCATGAGTGGGTCGTGTTATGGGA
*
918851 GGATCGACATCGGCGCCTTCCCCGTAGAGTGCCCATTTTTATGACCTCTTGATGGTTGCTGACGG
261 GGATCGACATCGGCGCCTTCCCCGTAGAGAGCCCATTTTTATGACCTCTTGATGGTTGCTGACGG
* * * *
918916 TTATTATGAGTGGTTCAACAGTAATGGGAAACCGTTTCTACTTCCCGAGGATACACGAGGATAGA
326 TTATTATGAGTGGTTCAACAGTAACGGGAAACCGTTTCTGCTTCCCGAGGATGCACGAGGACAGA
* * *
918981 CATTTCCGCGACGTCGATAGAGACGTTCACCGACACATCACCATCATCCCCCGACTCGTGGACGG
391 CATTTCCGCGACGTCGACAGAGACGTTCACCGACACAGCACCATCGTCCCCCGACTCGTGGACGG
* * * *
919046 AGAGTAGGTGCTTCCGGTTCATCCTCAGCTGCACCAGCAGGAACTTCACAGCAACCACCACAGCC
456 AGAGCAAGTGCTTCCGGTTCATCCTCAGCTGCACCAGCAGGAACTTCACAGCAGCCACCGCAGCC
* * * * *
919111 ATTTATGATACTGCTGCATTTCCATTACCAGAT---ACCGCCTCCTTCACCTGGTTTTATGACCC
521 ATTTATGATACCGCCGCCTTTCCATTACCAGATGCCGCCGCCGCCTTCACCTGGTTTTATGACCC
* * * *
919173 AGCCTCCGCCACCGTCACAGATGACCCCTCCTGGAGGCTATTATGGGTCTATGTTTACAGATCTG
586 CGCCGCCACCACCGTCACAGATGACCCCTCCTGGAGGCTATTATGGGTCTATGTTTGCAGATCTG
** * *
919238 ACTTGGGGTTCATATGTTGGATATCTAGCGGGTTCAGCCTCATCACCCATGGCAGCAGCA-AGGA
651 ACTTGGGGTTCATATACTGGATATCTGGCGGGTTCAGCCTCATCACCCATGGCCGCAGCACA-GA
* *
919302 CACCTCCTGTACAGTTTTCACACTCAGTGATTTCTGAGTTTTATGAGTTTTCCTAGTTTTCGCAG
715 CACCTCCTGTACAGTTTTCACACTCAGTGATGTCTGAGTTTTATGAGTTTTCCCAGTTTTCGCAG
919367 G-CGGTGGGATATTCAGTCATACACCTCCAGGGTCCTTATTTTATGGTCACCGAGATGAGGCATA
780 GCCGGTGGGATATTCAGTCATACACCTCCAGGGTCCTTATTTTATGGTCACCGAGATGAGGCATA
* * * *
919431 TTCGCATATTCTGGCCCGTACATTGCACCATAATCAGCTTCATACATGTGTACAAGAGGGTCAGT
845 TCCGCAAATTCTGGCCCGTACATTGCACCATAATCAGCTTCATACATGTGTGCAGGAGGGTCAGT
* *
919496 TTGTGCCACATTT-CATGGTTCTTCATCATCATCGGAGTTGAATTGCGGTGACTCTGGGGT
910 TTGTGCCACATTTCCA-GGTTCTTCATCATCATCAGAGTTGAATTGCGGTGAATCTGGGGT
* * *
919556 TCATATTATACTGATGATGTGAGGGCGATGATCCCACCTGAGTTGAGGGGCCCATCTGATGTTTG
1 TCATATTGTACTGATGATGTGAGGGCGGTGATCCCACCTGAGTTGAGGGGCCCATCAGATGTTTG
* * * *
919621 GATGGCGATTGTCCCTCTGATCTGTTATACGACTGTCGAGTGGTACTTTACTAATCACGTGCTCC
66 GATGGCGATGGTCCCTCTGATCTGTTATGCGACCGTCGAGTGGCACTTTACTAATCACGTGCTCC
919686 GGCAGTTTGGTTGTTTTCAACCAATTCCGGAAGCACCTCGCAATATGGACGAGTTGCATAGCTTA
131 GGCAGTTTGGTTGTTTTCAACCAATTCCGGAAGCACCTCGCAATATGGACGAGTTGCATAGCTTA
* * *
919751 GATATACGCGGTAAGACAGATACAGATTGGCTGGTGAGGCATCATGAGTGGGTCGTGTTGTGGGA
196 GATAGACGCGGCAAGACAGATACAGATTGGCTGGTGAGGCATCATGAGTGGGTCGTGTTATGGGA
* * * *
919816 GGATCGACATCGGTGCCTTCCCCGTAGAGTGCCCATTTTTATTACCTCTTGATGGTTACTGACGG
261 GGATCGACATCGGCGCCTTCCCCGTAGAGAGCCCATTTTTATGACCTCTTGATGGTTGCTGACGG
* * * * *
919881 TTATTATTAGTGGTTCAACAGTAATGGGAAACTGTTTCTTCTTCCCGAGGATGCACGAGGACAAA
326 TTATTATGAGTGGTTCAACAGTAACGGGAAACCGTTTCTGCTTCCCGAGGATGCACGAGGACAGA
*
919946 CATTTCCGCGACCTCGACAGAGACGTTCACCGACACAGCACCATCGTCCCCCGACTCGTGGACGG
391 CATTTCCGCGACGTCGACAGAGACGTTCACCGACACAGCACCATCGTCCCCCGACTCGTGGACGG
* *
920011 AGAGCAGGTGCTTCCGGTTCATCCTCAACTGCACCAGCAGGAACTTCACAGCAGCCACCGCAGCC
456 AGAGCAAGTGCTTCCGGTTCATCCTCAGCTGCACCAGCAGGAACTTCACAGCAGCCACCGCAGCC
* *
920076 ATTTATGATGCCGTCGCCTTTCCATTACCAGATGCCGCCGCCGCCTTCACCTGG-TTTATGACCC
521 ATTTATGATACCGCCGCCTTTCCATTACCAGATGCCGCCGCCGCCTTCACCTGGTTTTATGACCC
* * * *
920140 CGTCGCCACCACTGTCACAGATGACCACTCTTGGAGGCTATTATGGGTCTATGTTT-CTAGATCT
586 CGCCGCCACCACCGTCACAGATGACCCCTCCTGGAGGCTATTATGGGTCTATGTTTGC-AGATCT
*
920204 GACTTAGGGT
650 GACTTGGGGT
920214 ACAGACACCT
Statistics
Matches: 2378, Mismatches: 201, Indels: 32
0.91 0.08 0.01
Matches are distributed among these distances:
964 2 0.00
965 702 0.30
966 183 0.08
967 348 0.15
968 254 0.11
969 228 0.10
970 48 0.02
971 254 0.11
972 359 0.15
ACGTcount: A:0.22, C:0.25, G:0.25, T:0.28
Consensus pattern (969 bp):
TCATATTGTACTGATGATGTGAGGGCGGTGATCCCACCTGAGTTGAGGGGCCCATCAGATGTTTG
GATGGCGATGGTCCCTCTGATCTGTTATGCGACCGTCGAGTGGCACTTTACTAATCACGTGCTCC
GGCAGTTTGGTTGTTTTCAACCAATTCCGGAAGCACCTCGCAATATGGACGAGTTGCATAGCTTA
GATAGACGCGGCAAGACAGATACAGATTGGCTGGTGAGGCATCATGAGTGGGTCGTGTTATGGGA
GGATCGACATCGGCGCCTTCCCCGTAGAGAGCCCATTTTTATGACCTCTTGATGGTTGCTGACGG
TTATTATGAGTGGTTCAACAGTAACGGGAAACCGTTTCTGCTTCCCGAGGATGCACGAGGACAGA
CATTTCCGCGACGTCGACAGAGACGTTCACCGACACAGCACCATCGTCCCCCGACTCGTGGACGG
AGAGCAAGTGCTTCCGGTTCATCCTCAGCTGCACCAGCAGGAACTTCACAGCAGCCACCGCAGCC
ATTTATGATACCGCCGCCTTTCCATTACCAGATGCCGCCGCCGCCTTCACCTGGTTTTATGACCC
CGCCGCCACCACCGTCACAGATGACCCCTCCTGGAGGCTATTATGGGTCTATGTTTGCAGATCTG
ACTTGGGGTTCATATACTGGATATCTGGCGGGTTCAGCCTCATCACCCATGGCCGCAGCACAGAC
ACCTCCTGTACAGTTTTCACACTCAGTGATGTCTGAGTTTTATGAGTTTTCCCAGTTTTCGCAGG
CCGGTGGGATATTCAGTCATACACCTCCAGGGTCCTTATTTTATGGTCACCGAGATGAGGCATAT
CCGCAAATTCTGGCCCGTACATTGCACCATAATCAGCTTCATACATGTGTGCAGGAGGGTCAGTT
TGTGCCACATTTCCAGGTTCTTCATCATCATCAGAGTTGAATTGCGGTGAATCTGGGGT
Found at i:922369 original size:972 final size:970
Alignment explanation
Indices: 920214--925318 Score: 7939
Period size: 966 Copynumber: 5.3 Consensus size: 970
920204 GACTTAGGGT
*
920214 ACAGACACCTCCTGTACAGTTTTCACACTCAGCGATGTCTGAGTTTTATGAGTTTTCCCAGTTTT
1 ACAGACACCTCCTGTACAGTTTTCACACTCAGCGATGTCTGAGTTTTATGAGTTTTCCCAATTTT
* * ** * *
920279 CGCAGGCCGGTGGGATATTCAGTGATATACCTCCAGGGTGTTTATTTTATGGTAACCGAGATTAG
66 CGCAGGCCGGTGGGATATTCAGTCATACACCTCCAGGGTCCTTATTTTATGGTCACCGAGATGAG
* * *
920344 GCATATCCGCAAATTCTGGCCCGTACATTGCACCATAATCAGCTTCATACATGTATGCATGAGCG
131 GCATATCCGCAAATTCTGGCCCGTACATTGCACCATAATCAGCTTCATACATGTGTGCAGGAGGG
* *
920409 TCAGTTTGTGCCAAATTTCCTGGAACTTCATCATCATCGGAGTTGAATTGCGATGATTCTGGGGT
196 TCAGTTTGTGCCACATTTCCTGGAACTTCATCATCATCGGAGTTGAATTGCGGTGATTCTGGGGT
* *
920474 TCATATTATACTGATGATGTGAGGGCGGTGATCCCACCTGAGTTGAGGGGCCTATCAGATGTTTG
261 TCATATTGTACTGATGATGTGAGGGCGGTGATCCCACCTGAGTTGAGGGGCCCATCAGATGTTTG
*
920539 GATGGCGATGGTCCCTCTTATCTGTTATGCGACCGTCGAGTGGCACTTTACTAATCACGTGCTCC
326 GATGGCGATGGTCCCTCTGATCTGTTATGCGACCGTCGAGTGGCACTTTACTAATCACGTGCTCC
* *
920604 GGCAGTTTGGTTGTTTTCAACCAATTTCGGAAGTACCTCGCAATATGGACGAGTTGCATAGCTTA
391 GACAGTTTGGTTGTTTTCAACCAATTCCGGAAGTACCTCGCAATATGGACGAGTTGCATAGCTTA
** * *
920669 GATAGACGATGCAAGACAGATACAAATTGGCTAGTGAGGCATCATGAGTGGGTCGTGTTGTGGGA
456 GATAGACGCGGCAAGACAGATACAGATTGGCTGGTGAGGCATCATGAGTGGGTCGTGTTGTGGGA
920734 GGATCAACATCGGCGCCTTCCCCGTAGAGAGCCCATTTTTTATGACCTC-TGATGGTTGCTGACG
521 GGATCAACATCGGCGCCTTCCCCGTAGAGAGCCCATTTTTTATGACCTCTTGATGGTTGCTGACG
*
920798 GTTATTATGAGTGGTTCAACAGTAACGGGAAACCGTTTCTAATTCCCGAGGATGCACGAGGACAG
586 GTTATTATGAGTGGTTCAACAGTAACGGGAAACCGTTTCTACTTCCCGAGGATGCACGAGGACAG
* ** * * * * *
920863 ACATTTCCGCGACGTCGACAGAGATATTCACTGACACAACACCATTGTCCCCAGACTCGTGAACG
651 ACATTTCCGTGACGTCGACAGAGACGTTCACCGACACAGCACCATCGTCCCCCGACTCGTGGACG
* * *
920928 AAGAGCAGGTTTTTCCGGTTCATCCAT-AGCTGCACCAGCAGGAACTTCACAGCAGCCACCGCAG
716 GAGAGCAGGTGTTTCCGGTTCATCC-TCAGCTGCACCAGCAGGAACTTCACAGCAGCCACCGCAA
* * *
920992 CCATTTATGATGCCGCCACCTTTCCATTACCAGATACCG--CCGCCGCCTTCACCTAGTTTATGA
780 CCATTTATGATG-CGCCGCCTTTCCATTACCAGATGCCGCACCGCCGCCTTCACCTGGTTTATGA
* * * *
921055 CCCCGCTGCCACCATCGTCACAGATGACCACTCCTGGAGGCTATTATAGGTCTATGTTTGCAGAT
844 CCCCGCCGCCACCACCGTCACAGATGACCCCTCCTGGAGGCTATTATGGGTCTATGTTTGCAGAT
* * *
921120 CTGACTTGGGGTTCATATGCTAGATATCTGGCGGGTTCAGCCTCATCACCCATGGTCGCAAC
909 CTGACTTGGGGTTCATATACTGGATATCTGGCGGGTTCAGCCTCATCACCCATGGCCGCAAC
* * *
921182 ATAGACACCTTCTATACAGTTTTCACACTCAGCGATGTCTGAGTTTTATGAGTTTTCCCAATTTT
1 ACAGACACCTCCTGTACAGTTTTCACACTCAGCGATGTCTGAGTTTTATGAGTTTTCCCAATTTT
* ** *
921247 CGCAGACCGGTGGGATATTCAGTCATACACCTCTTGGGTCCTTATTTTATGGTAACCGAGATGAG
66 CGCAGGCCGGTGGGATATTCAGTCATACACCTCCAGGGTCCTTATTTTATGGTCACCGAGATGAG
921312 GCATATCCGCAAATTCTGGCCCGTACATTGCACCATAATCAGCTTCATACATGTGTGCAGGAGGG
131 GCATATCCGCAAATTCTGGCCCGTACATTGCACCATAATCAGCTTCATACATGTGTGCAGGAGGG
* * **
921377 TCAGTTTGTGCCACATTTCCTGGAACTTCATCATCATCAGAGTTTAATTATGGTGATTCTGGGGT
196 TCAGTTTGTGCCACATTTCCTGGAACTTCATCATCATCGGAGTTGAATTGCGGTGATTCTGGGGT
921442 TCATATTGTACTGATGATGTGAGGGCGGTGATCCCACCTGAGTTGAGGGGCCCATCAGATGTTTG
261 TCATATTGTACTGATGATGTGAGGGCGGTGATCCCACCTGAGTTGAGGGGCCCATCAGATGTTTG
*
921507 GATGGCGATGGTCCCTCTGATCTGTTATACGACCGTCGAGTGGCACTTTACTAATCACGTGCTCC
326 GATGGCGATGGTCCCTCTGATCTGTTATGCGACCGTCGAGTGGCACTTTACTAATCACGTGCTCC
* * *
921572 GACTGTTTGGTTGTTTTCAACCAATCCCAGAAGTACCTCGCAATATGGACGAGTTGCATAGCTTA
391 GACAGTTTGGTTGTTTTCAACCAATTCCGGAAGTACCTCGCAATATGGACGAGTTGCATAGCTTA
* *
921637 GATAGACGCGGTAAGACAGATACAGATTGGCTAGTGAGGCATCATGAGTGGGTCGTGTTGTGGGA
456 GATAGACGCGGCAAGACAGATACAGATTGGCTGGTGAGGCATCATGAGTGGGTCGTGTTGTGGGA
*
921702 GGATCAACATCTGCGCCTTCCCCGTAGAGAGCCCATTTTTTATGACCTCTTGATGGTTGCTGACG
521 GGATCAACATCGGCGCCTTCCCCGTAGAGAGCCCATTTTTTATGACCTCTTGATGGTTGCTGACG
* * * **
921767 GCTATTATGAGTAGTTCAACAGTAACGGGAAACCATTTCTGTTTCCCGAGGATGCACGAGGACAG
586 GTTATTATGAGTGGTTCAACAGTAACGGGAAACCGTTTCTACTTCCCGAGGATGCACGAGGACAG
* *
921832 ACATTTCCGTGACGTCGACTGAGACGTTCACCGACACAGCACCATCGTCCCCCAACTCGTGGACG
651 ACATTTCCGTGACGTCGACAGAGACGTTCACCGACACAGCACCATCGTCCCCCGACTCGTGGACG
* *
921897 GAGAGCAGGTGTTTCCGGTTCATCCTCAACTGTACCAGCAGGAACTTCACAGCAGCCACCGCAAC
716 GAGAGCAGGTGTTTCCGGTTCATCCTCAGCTGCACCAGCAGGAACTTCACAGCAGCCACCGCAAC
* *
921962 CATTTATGACGACGCCGCCTTTCCATTACCAGATGCCGCCACCGCCGCCATCACCTGGTTTATGA
781 CATTTATGATG-CGCCGCCTTTCCATTACCAGATGCCG-CACCGCCGCCTTCACCTGGTTTATGA
* *
922027 CCCCGCCGCTACCACCGTCACAGATGACCCCTCCTGGAGGCTATTATGGGTCTATGTTTGCATAT
844 CCCCGCCGCCACCACCGTCACAGATGACCCCTCCTGGAGGCTATTATGGGTCTATGTTTGCAGAT
*
922092 CTGACTTGGGGTTCATATACTGGATATCTGGCGGTTTCAGCCTCATCACCCATGGCCGCAAC
909 CTGACTTGGGGTTCATATACTGGATATCTGGCGGGTTCAGCCTCATCACCCATGGCCGCAAC
* *
922154 ACAGACACCTCCTATACAGTTTTCACACTCAGCGATGTATGAGTTTTATGAGTTTTCCCAATTTT
1 ACAGACACCTCCTGTACAGTTTTCACACTCAGCGATGTCTGAGTTTTATGAGTTTTCCCAATTTT
*
922219 CGCAGGCCGGTGGGATATTCAGTCATACACCTCCAGGGTCCTTATTTTATGGTCAGCGAGATGAG
66 CGCAGGCCGGTGGGATATTCAGTCATACACCTCCAGGGTCCTTATTTTATGGTCACCGAGATGAG
* * *
922284 TCATATCCGCAAATTCTGGCCCGTATATTGCACCATAATCAGCTTCATACATGTGTGTAGGAGGG
131 GCATATCCGCAAATTCTGGCCCGTACATTGCACCATAATCAGCTTCATACATGTGTGCAGGAGGG
*
922349 TCAGTTTGTGCCACATTTCCTGGAACTTCATTATCATCGGAGTTGAATTGCGGTGATTCTGGGGT
196 TCAGTTTGTGCCACATTTCCTGGAACTTCATCATCATCGGAGTTGAATTGCGGTGATTCTGGGGT
* *
922414 TCATATTGTACTGATGATGTGAGGGCGGTGATCCCACCTGAGTTGAGGGGTCTATCAGATGTTTG
261 TCATATTGTACTGATGATGTGAGGGCGGTGATCCCACCTGAGTTGAGGGGCCCATCAGATGTTTG
* *
922479 GATGGCGATGGTCCCTCTGAT-TCGTTATGCGACCGTCGAGTGGCACTTTACGAATCATGTGCTC
326 GATGGCGATGGTCCCTCTGATCT-GTTATGCGACCGTCGAGTGGCACTTTACTAATCACGTGCTC
* * * *
922543 C-AGCAGTTTTGTTGTTTTCAACCAATTCTGGAAGTACCTCACAATATGGATGAGTTGCATAGCT
390 CGA-CAGTTTGGTTGTTTTCAACCAATTCCGGAAGTACCTCGCAATATGGACGAGTTGCATAGCT
* * * *
922607 TAGATAGACGCGGCAAGACAGATACAGACTGGCTGGAGAGGCATCATGAGTTGGTCGTGTTGTGA
454 TAGATAGACGCGGCAAGACAGATACAGATTGGCTGGTGAGGCATCATGAGTGGGTCGTGTTGTGG
* *
922672 GAGGATCGACATCAGCGCCTTCCCCGTAGAGAGCCCATTTTTTATGACCTCTTGATGGTTGCTGA
519 GAGGATCAACATCGGCGCCTTCCCCGTAGAGAGCCCATTTTTTATGACCTCTTGATGGTTGCTGA
* * * * * *
922737 CAGTTATTATGAGTGGTTCAACAGTAACAGAAAACCATTTTTACTTCCCGAGGATGCACGAGGAT
584 CGGTTATTATGAGTGGTTCAACAGTAACGGGAAACCGTTTCTACTTCCCGAGGATGCACGAGGAC
* * *
922802 AGACATTTCTGCGACGTCGACAGAGACGTTCATCGACACAGCACCATCGTCCCCCGACTCGTGGA
649 AGACATTTCCGTGACGTCGACAGAGACGTTCACCGACACAGCACCATCGTCCCCCGACTCGTGGA
* *
922867 TGGAGAGCAGGTGCTTCCGGTTCATCCTCAGCTGCACCAGCAGGAACTTCACAGCAGCCACCGCA
714 CGGAGAGCAGGTGTTTCCGGTTCATCCTCAGCTGCACCAGCAGGAACTTCACAGCAGCCACCGCA
* *
922932 TCCATTTATGATGCTGTCGCCTTTCCATTACCAGAT---G--CCGCCGCCTTCACCTGGTTTATG
779 ACCATTTATGATGC-GCCGCCTTTCCATTACCAGATGCCGCACCGCCGCCTTCACCTGGTTTATG
*** * *
922992 AGATCACCGCCACCACCGTCACAGATGACCCCTCCTGGAGGTTATTATGGGTCTATGTTTGCAGA
843 ACCCCGCCGCCACCACCGTCACAGATGACCCCTCCTGGAGGCTATTATGGGTCTATGTTTGCAGA
923057 TCTGACTTGGGGTTCATATACTGGATATCTGGCGGGTTCAGCCTCATCACCCATGGCCGCAAC
908 TCTGACTTGGGGTTCATATACTGGATATCTGGCGGGTTCAGCCTCATCACCCATGGCCGCAAC
* *
923120 ACAGACACCTCCTGTACAGTTTTCACACTCAGCGATGTCTGAGTTTTATGAGTTTTTCCAGTTTT
1 ACAGACACCTCCTGTACAGTTTTCACACTCAGCGATGTCTGAGTTTTATGAGTTTTCCCAATTTT
* * *
923185 CGTAGGCCGGTGGGATATTCAGTCATACACCTGCAGGGTCATTATTTTATGGTCACCGAGATGAG
66 CGCAGGCCGGTGGGATATTCAGTCATACACCTCCAGGGTCCTTATTTTATGGTCACCGAGATGAG
*
923250 GCATATCCGTAAATTCTGGCCCGTACATTGCACCATAATCAGCTTCATACATGTGTGCAGGAGGG
131 GCATATCCGCAAATTCTGGCCCGTACATTGCACCATAATCAGCTTCATACATGTGTGCAGGAGGG
* * * * **
923315 TCAATTTTTGTCACATTTCCTGGAATTTCATCATCATTAGAGTTGAATTGCGGTGATTCTGGGGT
196 TCAGTTTGTGCCACATTTCCTGGAACTTCATCATCATCGGAGTTGAATTGCGGTGATTCTGGGGT
*
923380 TCATATTGTACTGATGATGTGAGGGCGGTGATCCCACTTGAGTTGAGGGG-CCATTCAGATGTTT
261 TCATATTGTACTGATGATGTGAGGGCGGTGATCCCACCTGAGTTGAGGGGCCCA-TCAGATGTTT
* * *
923444 GGATGGCGATGGTCCCTCTGATCTATTATGCGACCATCGAGTGGCACTTTATTAATCACGTGCTC
325 GGATGGCGATGGTCCCTCTGATCTGTTATGCGACCGTCGAGTGGCACTTTACTAATCACGTGCTC
*
923509 CGACAGTTTGGTTGTTTTCAACCAATTCCGGAAGCACCTCGCAATATGGACGAGTTGCATAGCTT
390 CGACAGTTTGGTTGTTTTCAACCAATTCCGGAAGTACCTCGCAATATGGACGAGTTGCATAGCTT
* *
923574 AGATAGACGTGGCAAGACAGATACAGATTGGCTGGTGAGGCATCATGAGTGGGTCGTGTTTTGGG
455 AGATAGACGCGGCAAGACAGATACAGATTGGCTGGTGAGGCATCATGAGTGGGTCGTGTTGTGGG
*
923639 AGGATCAACATCGGCGCCTTCCCCGTAGAGAGCCCATTTTTTATGACCTATTGATGGTTGCTGAC
520 AGGATCAACATCGGCGCCTTCCCCGTAGAGAGCCCATTTTTTATGACCTCTTGATGGTTGCTGAC
* * *
923704 GGTTATTATGAGTGGTTCAACAGTAACGGGAAACCGTTTTTGCTTCCCGAGGATGTACGAGGACA
585 GGTTATTATGAGTGGTTCAACAGTAACGGGAAACCGTTTCTACTTCCCGAGGATGCACGAGGACA
* * * * * ** *
923769 GATATTTCCTTGACGTCGACAGAGACGTTGACCGACACAGTACTATTATCCCCCGACTCGTGGAT
650 GACATTTCCGTGACGTCGACAGAGACGTTCACCGACACAGCACCATCGTCCCCCGACTCGTGGAC
** * * * * * *
923834 GGAGAGCATATGCTTCCGGTTCATCTTCAACTGCACCAGCATGAACTTCACAGCAGCCACCGTAG
715 GGAGAGCAGGTGTTTCCGGTTCATCCTCAGCTGCACCAGCAGGAACTTCACAGCAGCCACCGCAA
* *
923899 CCATTTATGATGGCGCCGCCTTTCCATTACTAGATGCCGCAGCCGCTGCCTTCACCTGGTTTATG
780 CCATTTATGAT-GCGCCGCCTTTCCATTACCAGATGCCGCA-CCGCCGCCTTCACCTGGTTTATG
* *
923964 ACCCCGCCGCCGCCACCACCTTCACAGATGACCCCTCCTGGAGGCTATTATGGGTCTATGTTTGT
843 A--CC-CCGCCGCCACCACCGTCACAGATGACCCCTCCTGGAGGCTATTATGGGTCTATGTTTGC
924029 AGATCTGACTTGGGGTTCATATACTGGATATCTGGCGGGTTCAGCCTCATCACCCATGGCCGCAA
905 AGATCTGACTTGGGGTTCATATACTGGATATCTGGCGGGTTCAGCCTCATCACCCATGGCCGCAA
*
924094 T
970 C
* * * * * *
924095 ATAGACACCTCTTGTACAGTTTTCACACTCAGTGATGTATGAGTTTTATAAGTTTTCCCAGTTTT
1 ACAGACACCTCCTGTACAGTTTTCACACTCAGCGATGTCTGAGTTTTATGAGTTTTCCCAATTTT
* *
924160 CGCAGGCTGGTGGGATATTCAGTCATACACCTCCAGGGTCCTTATTTTATGGTCACCGATATGAG
66 CGCAGGCCGGTGGGATATTCAGTCATACACCTCCAGGGTCCTTATTTTATGGTCACCGAGATGAG
* *
924225 GCATATCCGAAAATTCTGGCCCGTACATTGCACCATAATCAGCTTCATACATGTGTGTAGGAGGG
131 GCATATCCGCAAATTCTGGCCCGTACATTGCACCATAATCAGCTTCATACATGTGTGCAGGAGGG
* *
924290 TCAGTTTGTGCCACATTTCCTAGAACTTCATCAACATCGGAGTTGAATTGTC-GTGATTCTGGGG
196 TCAGTTTGTGCCACATTTCCTGGAACTTCATCATCATCGGAGTTGAATTG-CGGTGATTCTGGGG
*
924354 TTCATATTGTACTGATGATGTGAGGGCGTTGATCCCACCTGAGTTGAGGGGCCCATCAGATGTTT
260 TTCATATTGTACTGATGATGTGAGGGCGGTGATCCCACCTGAGTTGAGGGGCCCATCAGATGTTT
924419 GGATGGCGATGGTCCCTCTGATCTGTTATGCGACCGTCGAGTGGCACTTTACTAATCACGTGCTC
325 GGATGGCGATGGTCCCTCTGATCTGTTATGCGACCGTCGAGTGGCACTTTACTAATCACGTGCTC
924484 CGACAGTTTGGTTGTTTTCAACCAATTCCGGAAGTACCTCGCAATATGGACGAGTTGCATAGCTT
390 CGACAGTTTGGTTGTTTTCAACCAATTCCGGAAGTACCTCGCAATATGGACGAGTTGCATAGCTT
* * * *
924549 AGATAGACGCGGTAAGACAGATACAGATTGGCTGGTGAGGCATTATTAGTGGGTCGTGTTGTGAG
455 AGATAGACGCGGCAAGACAGATACAGATTGGCTGGTGAGGCATCATGAGTGGGTCGTGTTGTGGG
* * *
924614 AGGAT-ATACATCGACGCCTTTCCCGTAGAGAGCCCATTTTTTATGACCTCTTGATGGTTGCTAA
520 AGGATCA-ACATCGGCGCCTTCCCCGTAGAGAGCCCATTTTTTATGACCTCTTGATGGTTGCTGA
* * *
924678 CGGTTATTATGAGTGGTTCAACAGTAACGGGAAACTGTTTCTTCTTTCCACTTTCCGAGGATGCT
584 CGGTTATTATGAGTGGTTCAACAGTAACGGGAAACCG--T-TTC--T--ACTTCCCGAGGATGCA
* * * * *
924743 CGAGGACAGATATTTCCATGACGTCGATAGAGACGTTCACCGACACAGCACCATCATGCCCCGAC
642 CGAGGACAGACATTTCCGTGACGTCGACAGAGACGTTCACCGACACAGCACCATCGTCCCCCGAC
*
924808 TCGTGGACGGAGAGCAGGTGCTTT-CGGTTCATCCTCAGCTACACCAGCAGGAACTTCACAGCAG
707 TCGTGGACGGAGAGCAGGTG-TTTCCGGTTCATCCTCAGCTGCACCAGCAGGAACTTCACAGCAG
*
924872 CCACCGCAACCATTTATGATGC-CCTTGCCTTTCCATTACCAGATGCCG--CCACCGCCTTCACC
771 CCACCGCAACCATTTATGATGCGCC--GCCTTTCCATTACCAGATGCCGCACCGCCGCCTTCACC
* * * * * *
924934 TGGTTTTATGACCCCACCGCCGCCACCGTTAGAGATGACCCCTCTTGGAGGCTATTATGGGTTTA
834 TGG-TTTATGACCCCGCCGCCACCACCGTCACAGATGACCCCTCCTGGAGGCTATTATGGGTCTA
* * * * *
924999 TGTTTGCAGAT-TCGACTTGGGGTTCATATGCTAGATATCTAGCGGGTTCAACCTCATCACCTAT
898 TGTTTGCAGATCT-GACTTGGGGTTCATATACTGGATATCTGGCGGGTTCAGCCTCATCACCCAT
*
925063 GGCCGCAGC
962 GGCCGCAAC
925072 ACAGACACCTCCTGTACAGTTTTCACACTCAGCGATGTCTGAGTTTTATGAGTTTTCCCAATTTT
1 ACAGACACCTCCTGTACAGTTTTCACACTCAGCGATGTCTGAGTTTTATGAGTTTTCCCAATTTT
* *
925137 CGCAGGCCGGTGGGATATTTAGTCAT--A----CA---T-C-TATTTTATGGTCACCGAGATAAG
66 CGCAGGCCGGTGGGATATTCAGTCATACACCTCCAGGGTCCTTATTTTATGGTCACCGAGATGAG
925191 GCATATCCGCAAATTCTGGCCCGTACATTGCACCATAATCAGCTTCATACATGTGTGCAGGAGGG
131 GCATATCCGCAAATTCTGGCCCGTACATTGCACCATAATCAGCTTCATACATGTGTGCAGGAGGG
925256 TCAGTTTGTGCCACATTTCCTGGAACTTCATCATCATCGGAGTTGAATTGCGGTGATTCTGGG
196 TCAGTTTGTGCCACATTTCCTGGAACTTCATCATCATCGGAGTTGAATTGCGGTGATTCTGGG
925319 TAAATAAATA
Statistics
Matches: 3796, Mismatches: 304, Indels: 76
0.91 0.07 0.02
Matches are distributed among these distances:
965 3 0.00
966 1023 0.27
967 5 0.00
968 536 0.14
969 224 0.06
971 5 0.00
972 913 0.24
974 1 0.00
975 694 0.18
976 5 0.00
977 192 0.05
978 4 0.00
979 15 0.00
980 10 0.00
981 2 0.00
982 162 0.04
983 2 0.00
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.29
Consensus pattern (970 bp):
ACAGACACCTCCTGTACAGTTTTCACACTCAGCGATGTCTGAGTTTTATGAGTTTTCCCAATTTT
CGCAGGCCGGTGGGATATTCAGTCATACACCTCCAGGGTCCTTATTTTATGGTCACCGAGATGAG
GCATATCCGCAAATTCTGGCCCGTACATTGCACCATAATCAGCTTCATACATGTGTGCAGGAGGG
TCAGTTTGTGCCACATTTCCTGGAACTTCATCATCATCGGAGTTGAATTGCGGTGATTCTGGGGT
TCATATTGTACTGATGATGTGAGGGCGGTGATCCCACCTGAGTTGAGGGGCCCATCAGATGTTTG
GATGGCGATGGTCCCTCTGATCTGTTATGCGACCGTCGAGTGGCACTTTACTAATCACGTGCTCC
GACAGTTTGGTTGTTTTCAACCAATTCCGGAAGTACCTCGCAATATGGACGAGTTGCATAGCTTA
GATAGACGCGGCAAGACAGATACAGATTGGCTGGTGAGGCATCATGAGTGGGTCGTGTTGTGGGA
GGATCAACATCGGCGCCTTCCCCGTAGAGAGCCCATTTTTTATGACCTCTTGATGGTTGCTGACG
GTTATTATGAGTGGTTCAACAGTAACGGGAAACCGTTTCTACTTCCCGAGGATGCACGAGGACAG
ACATTTCCGTGACGTCGACAGAGACGTTCACCGACACAGCACCATCGTCCCCCGACTCGTGGACG
GAGAGCAGGTGTTTCCGGTTCATCCTCAGCTGCACCAGCAGGAACTTCACAGCAGCCACCGCAAC
CATTTATGATGCGCCGCCTTTCCATTACCAGATGCCGCACCGCCGCCTTCACCTGGTTTATGACC
CCGCCGCCACCACCGTCACAGATGACCCCTCCTGGAGGCTATTATGGGTCTATGTTTGCAGATCT
GACTTGGGGTTCATATACTGGATATCTGGCGGGTTCAGCCTCATCACCCATGGCCGCAAC
Found at i:926432 original size:13 final size:12
Alignment explanation
Indices: 926399--926432 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
926389 AATAAGTATA
*
926399 ATAAAAAAATTT
1 ATAACAAAATTT
926411 ATAACAAAATTT
1 ATAACAAAATTT
926423 ATAACGAAAA
1 ATAAC-AAAA
926433 ATCGCACAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 16 0.80
13 4 0.20
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (12 bp):
ATAACAAAATTT
Found at i:926798 original size:51 final size:51
Alignment explanation
Indices: 926714--926874 Score: 209
Period size: 51 Copynumber: 3.2 Consensus size: 51
926704 CTACGTGGCG
*
926714 TATAGCGTGGATCAGGGGGCACACTATACCCACGTGTAAGCCATGTCAGCA
1 TATAGCGCGGATCAGGGGGCACACTATACCCACGTGTAAGCCATGTCAGCA
* *
926765 TATATCGCGGATCAGGGGGCACACTATACCCACGTGTAAGCTATGTCAGCA
1 TATAGCGCGGATCAGGGGGCACACTATACCCACGTGTAAGCCATGTCAGCA
* * * * **
926816 TATAGCGCGG-TACAAGGGGCGCACTATACCCCACGTG-ACGTCAAATCAGCA
1 TATAGCGCGGAT-CAGGGGGCACACTATA-CCCACGTGTAAGCCATGTCAGCA
926867 TATAGCGC
1 TATAGCGC
926875 AGTGCATGGA
Statistics
Matches: 97, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
50 1 0.01
51 88 0.91
52 8 0.08
ACGTcount: A:0.28, C:0.27, G:0.26, T:0.19
Consensus pattern (51 bp):
TATAGCGCGGATCAGGGGGCACACTATACCCACGTGTAAGCCATGTCAGCA
Found at i:926949 original size:29 final size:29
Alignment explanation
Indices: 926903--926973 Score: 108
Period size: 29 Copynumber: 2.4 Consensus size: 29
926893 TACTGCTACG
926903 GGTGTTAGATCGGAAAATAGAATCTGACC
1 GGTGTTAGATCGGAAAATAGAATCTGACC
* *
926932 GGTGTTAGATCAGG-AAATATAATCTGATC
1 GGTGTTAGATC-GGAAAATAGAATCTGACC
926961 GGTGTTAGATCGG
1 GGTGTTAGATCGG
926974 TATATATATC
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
28 2 0.05
29 35 0.90
30 2 0.05
ACGTcount: A:0.31, C:0.11, G:0.30, T:0.28
Consensus pattern (29 bp):
GGTGTTAGATCGGAAAATAGAATCTGACC
Found at i:930048 original size:22 final size:22
Alignment explanation
Indices: 930023--930064 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
930013 ATATTTAATA
930023 ATATTTCTAATAATATAATATT
1 ATATTTCTAATAATATAATATT
* *
930045 ATATTTTTAATATTATAATA
1 ATATTTCTAATAATATAATA
930065 AAATAATTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (22 bp):
ATATTTCTAATAATATAATATT
Found at i:930089 original size:34 final size:33
Alignment explanation
Indices: 929998--930091 Score: 95
Period size: 32 Copynumber: 2.8 Consensus size: 33
929988 TATTAATTAT
* * * *
929998 TAAAATATTTAAAATATATTTAATAATATTTCTAA
1 TAAAATAATT-AATTATATTTATTAATA-TTATAA
*
930033 TAATATAA-T-ATTATATTT-TTAATATTATAA
1 TAAAATAATTAATTATATTTATTAATATTATAA
930063 TAAAATAATTAATTATATTATATTAATAT
1 TAAAATAATTAATTATATT-TATTAATAT
930092 AAGATATTAT
Statistics
Matches: 49, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
30 12 0.24
31 6 0.12
32 16 0.33
33 1 0.02
34 8 0.16
35 6 0.12
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (33 bp):
TAAAATAATTAATTATATTTATTAATATTATAA
Found at i:930093 original size:28 final size:29
Alignment explanation
Indices: 930054--930136 Score: 73
Period size: 28 Copynumber: 2.9 Consensus size: 29
930044 TATATTTTTA
*
930054 ATATT-ATAATAAAATAATTA-ATTATATT
1 ATATTAAT-ATAAAATAATTATAATATATT
*
930082 ATATTAATATAAGAT-ATTATAATATATT
1 ATATTAATATAAAATAATTATAATATATT
* * *
930110 TTAATAATATATAATATATTATTAATA
1 ATATTAATATAAAATA-ATTA-TAATA
930137 AAATTTAAAT
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
27 4 0.09
28 29 0.66
29 2 0.05
30 4 0.09
31 5 0.11
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (29 bp):
ATATTAATATAAAATAATTATAATATATT
Found at i:930124 original size:20 final size:21
Alignment explanation
Indices: 930099--930137 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
930089 TATAAGATAT
930099 TATAATATATT-TTAATAATA
1 TATAATATATTATTAATAATA
930119 TATAATATATTATTAATAA
1 TATAATATATTATTAATAA
930138 AATTTAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
TATAATATATTATTAATAATA
Found at i:930129 original size:30 final size:30
Alignment explanation
Indices: 930001--930136 Score: 84
Period size: 30 Copynumber: 4.5 Consensus size: 30
929991 TAATTATTAA
* *
930001 AATAT-TTAAAATATA-TTTAATAATATTTCT
1 AATATATTATAATATATTTTAATAATA--TAT
* * *
930031 AATAATATAATATTATATTTTTAATATTATAAT
1 AAT-ATATTATAATATA-TTTTAATAATAT-AT
* * * *
930064 AAAATAAT-TAAT-TATATT-ATATTAATAT
1 AATATATTATAATATATTTTAATAAT-ATAT
*
930092 AAGATATTATAATATATTTTAATAATATAT
1 AATATATTATAATATATTTTAATAATATAT
930122 AATATATTATTAATA
1 AATATATTA-TAATA
930137 AAATTTAAAT
Statistics
Matches: 81, Mismatches: 15, Indels: 19
0.70 0.13 0.17
Matches are distributed among these distances:
28 13 0.16
29 9 0.11
30 22 0.27
31 14 0.17
32 11 0.14
33 3 0.04
34 9 0.11
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.49
Consensus pattern (30 bp):
AATATATTATAATATATTTTAATAATATAT
Found at i:930185 original size:8 final size:9
Alignment explanation
Indices: 930168--930274 Score: 87
Period size: 9 Copynumber: 11.6 Consensus size: 9
930158 TTCATAGAAA
930168 TAATATTAT
1 TAATATTAT
930177 TAA-ATTAT
1 TAATATTAT
*
930185 TAATATTGAA
1 TAATATT-AT
930195 TAATATTAT
1 TAATATTAT
930204 TAA-ATTAT
1 TAATATTAT
*
930212 TAATATTGAA
1 TAATATT-AT
930222 TAATATTAT
1 TAATATTAT
*
930231 TTATA-TATT
1 TAATATTA-T
930240 TAATATTAAT
1 TAATATT-AT
*
930250 ATAATAATCTAA
1 -TAAT-AT-TAT
930262 TAATATT-T
1 TAATATTAT
930270 TAATA
1 TAATA
930275 AATATATTTA
Statistics
Matches: 80, Mismatches: 8, Indels: 21
0.73 0.07 0.19
Matches are distributed among these distances:
8 23 0.29
9 24 0.30
10 20 0.25
11 9 0.11
12 3 0.04
13 1 0.01
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.50
Consensus pattern (9 bp):
TAATATTAT
Found at i:930200 original size:10 final size:9
Alignment explanation
Indices: 930166--930250 Score: 61
Period size: 8 Copynumber: 9.4 Consensus size: 9
930156 ATTTCATAGA
930166 AATAATATT
1 AATAATATT
*
930175 ATTAA-ATT
1 AATAATATT
*
930183 ATTAATATT
1 AATAATATT
930192 GAATAATATT
1 -AATAATATT
*
930202 ATTAA-ATT
1 AATAATATT
*
930210 ATTAATATT
1 AATAATATT
930219 GAATAATATT
1 -AATAATATT
*
930229 ATTTATATATT
1 A-ATA-ATATT
930240 --TAATATT
1 AATAATATT
930247 AATA
1 AATA
930251 TAATAATCTA
Statistics
Matches: 63, Mismatches: 5, Indels: 16
0.75 0.06 0.19
Matches are distributed among these distances:
7 5 0.08
8 18 0.29
9 17 0.27
10 18 0.29
11 5 0.08
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.49
Consensus pattern (9 bp):
AATAATATT
Found at i:930250 original size:27 final size:27
Alignment explanation
Indices: 930166--930231 Score: 132
Period size: 27 Copynumber: 2.4 Consensus size: 27
930156 ATTTCATAGA
930166 AATAATATTATTAAATTATTAATATTG
1 AATAATATTATTAAATTATTAATATTG
930193 AATAATATTATTAAATTATTAATATTG
1 AATAATATTATTAAATTATTAATATTG
930220 AATAATATTATT
1 AATAATATTATT
930232 TATATATTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (27 bp):
AATAATATTATTAAATTATTAATATTG
Found at i:930289 original size:23 final size:23
Alignment explanation
Indices: 930242--930314 Score: 76
Period size: 23 Copynumber: 3.1 Consensus size: 23
930232 TATATATTTA
*
930242 ATATTAATATAATA-ATCTAATAAT
1 ATATTAATA-AATATATTTAA-AAT
*
930266 ATTTTAATAAATATATTTAAAAT
1 ATATTAATAAATATATTTAAAAT
* * *
930289 ATACTAATTAATATTTTTAAAAT
1 ATATTAATAAATATATTTAAAAT
930312 ATA
1 ATA
930315 ATATGACACT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
23 29 0.69
24 13 0.31
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (23 bp):
ATATTAATAAATATATTTAAAAT
Found at i:932986 original size:2 final size:2
Alignment explanation
Indices: 932981--933009 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
932971 TCAACAAATA
932981 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
933010 CTCTTATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:935984 original size:32 final size:33
Alignment explanation
Indices: 935947--936032 Score: 106
Period size: 32 Copynumber: 2.7 Consensus size: 33
935937 TTCAGTATAG
* * *
935947 CATTCAAATAATACATAGA-AAACTCAACATTG
1 CATTCAGATAATGCATAGACAAACTCAACATTA
* *
935979 TATTCAGATAATGCATA-ACAGACTCAACATTA
1 CATTCAGATAATGCATAGACAAACTCAACATTA
936011 CATTCAGATAATGCATAG-CAAA
1 CATTCAGATAATGCATAGACAAA
936033 GTTAGTAATG
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
31 1 0.02
32 44 0.98
ACGTcount: A:0.47, C:0.19, G:0.09, T:0.26
Consensus pattern (33 bp):
CATTCAGATAATGCATAGACAAACTCAACATTA
Found at i:936047 original size:32 final size:32
Alignment explanation
Indices: 935975--936156 Score: 211
Period size: 32 Copynumber: 5.7 Consensus size: 32
935965 AAAACTCAAC
* * * **
935975 ATTGTATTCAGATAATGCATAACAGACTCAAC
1 ATTGCATTCAGATAATGCACAACAGAGTCAGT
* * * * *
936007 ATTACATTCAGATAATGCATAGCAAAGTTAGT
1 ATTGCATTCAGATAATGCACAACAGAGTCAGT
* * *
936039 AATGCATTCAGATAATGCCCAATAGAGTCAGT
1 ATTGCATTCAGATAATGCACAACAGAGTCAGT
*
936071 ATTACATTCAGATAATGCACAACAGAGTCAGT
1 ATTGCATTCAGATAATGCACAACAGAGTCAGT
* * *
936103 ATTGCATTCAAATAATGCACAACATAGTCAAT
1 ATTGCATTCAGATAATGCACAACAGAGTCAGT
936135 ATTGCATTCAGATAATGCACAA
1 ATTGCATTCAGATAATGCACAA
936157 TAAGTTAATT
Statistics
Matches: 125, Mismatches: 25, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 125 1.00
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.27
Consensus pattern (32 bp):
ATTGCATTCAGATAATGCACAACAGAGTCAGT
Found at i:936080 original size:96 final size:96
Alignment explanation
Indices: 935980--936158 Score: 241
Period size: 96 Copynumber: 1.9 Consensus size: 96
935970 TCAACATTGT
* * * * * *
935980 ATTCAGATAATGCATAACAGACTCAACATTACATTCAGATAATGCATAGCAAAGTTAGTAATGCA
1 ATTCAGATAATGCACAACAGACTCAACATTACATTCAAATAATGCACAACAAAGTCAATAATGCA
*
936045 TTCAGATAATGCCCAATAGAGTCAGTATTAC
66 TTCAGATAATGCACAATAGAGTCAGTATTAC
* ** * * *
936076 ATTCAGATAATGCACAACAGAGTCAGTATTGCATTCAAATAATGCACAACATAGTCAATATTGCA
1 ATTCAGATAATGCACAACAGACTCAACATTACATTCAAATAATGCACAACAAAGTCAATAATGCA
936141 TTCAGATAATGCACAATA
66 TTCAGATAATGCACAATA
936159 AGTTAATTTT
Statistics
Matches: 70, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
96 70 1.00
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.27
Consensus pattern (96 bp):
ATTCAGATAATGCACAACAGACTCAACATTACATTCAAATAATGCACAACAAAGTCAATAATGCA
TTCAGATAATGCACAATAGAGTCAGTATTAC
Found at i:938383 original size:19 final size:20
Alignment explanation
Indices: 938352--938389 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
938342 CCTTATTCAA
938352 ACCTTTGAAAATCCAAATAT
1 ACCTTTGAAAATCCAAATAT
938372 ACCTTT-AAAATCCAAATA
1 ACCTTTGAAAATCCAAATA
938390 CTAATCAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.47, C:0.21, G:0.03, T:0.29
Consensus pattern (20 bp):
ACCTTTGAAAATCCAAATAT
Found at i:944227 original size:24 final size:24
Alignment explanation
Indices: 944200--944246 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
944190 GCCGCGTAGA
*
944200 ATTTGCACTGAAGTGCCACATAGC
1 ATTTGCACCGAAGTGCCACATAGC
944224 ATTTGCACCGAAGTGCCACATAG
1 ATTTGCACCGAAGTGCCACATAG
944247 AATTGTCCCG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (24 bp):
ATTTGCACCGAAGTGCCACATAGC
Found at i:954936 original size:12 final size:12
Alignment explanation
Indices: 954919--954944 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
954909 ATAACTCCAA
954919 GGAATTAGTATT
1 GGAATTAGTATT
954931 GGAATTAGTATT
1 GGAATTAGTATT
954943 GG
1 GG
954945 TTGAAGAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.31, T:0.38
Consensus pattern (12 bp):
GGAATTAGTATT
Found at i:957987 original size:320 final size:320
Alignment explanation
Indices: 957398--958029 Score: 1138
Period size: 320 Copynumber: 2.0 Consensus size: 320
957388 TGGGTAGACG
* *
957398 GTGAAGAAGCACTGCAGTTGCTCGCTCACACCTTGGATAAAGTTTTTCTCTCTTTTTCCTTGCCT
1 GTGAAGAAGCACTGCAGTTGCTCGCTCACACCTTGGATAAAGCTCTTCTCTCTTTTTCCTTGCCT
957463 CTTTTCTTTGGCGGCTACAACTGGTTATTTATAAGGAAAGATCTCGTAGGACTTTGCATGCTTTT
66 CTTTTCTTTGGCGGCTACAACTGGTTATTTATAAGGAAAGATCTCGTAGGACTTTGCATGCTTTT
* *
957528 GGAGTTTCCTTAAATAACCGTTATTAAATGCCAAACTTAAAAGGAAAGGCAGCTGTCAGAATAAT
131 GGAGTTTCCTTAAATAACCGTTATTAAATGCCAAAATTAAAAGGAAAGACAGCTGTCAGAATAAT
**
957593 TAAGGCTTACTTGCACGTGAAGTAGGTCATCCAAGTGGCGTGTGGCATAGGTGGTTTCATCACAC
196 TAAGGCTTACTTGCACGTGAAGTAGGTCATCCAAGTGGCGTGTGAAATAGGTGGTTTCATCACAC
*
957658 CTGCTTCAGACTTCTTTAGATAAACCTTGCCTTGACGAGATAAATATGCTCCAAAAGCAT
261 CTGCTTCAGACTTCTTCAGATAAACCTTGCCTTGACGAGATAAATATGCTCCAAAAGCAT
*
957718 GTGAAGCAGCACTGCAGTTGCTCGCTCACACCTTGGATAAAGCTCTTCTCTCTTTTTCCTTGCCT
1 GTGAAGAAGCACTGCAGTTGCTCGCTCACACCTTGGATAAAGCTCTTCTCTCTTTTTCCTTGCCT
*
957783 CTTTTCTTTGGCGGCTACGACTGGTTATTTATAAGGAAAGATCTCGTAGGACTTTGCATGCTTTT
66 CTTTTCTTTGGCGGCTACAACTGGTTATTTATAAGGAAAGATCTCGTAGGACTTTGCATGCTTTT
* * *
957848 GGAGTTTCCTTAAATAGCCGTTATTAAATGCCAAAATTAAAAGGAAATACGGCTGTCAGAATAAT
131 GGAGTTTCCTTAAATAACCGTTATTAAATGCCAAAATTAAAAGGAAAGACAGCTGTCAGAATAAT
* *
957913 TAAGGCTTACTTGCACGTGAAGTAGGTCATCCATGTGGCGTGTGAAATAGGTGGTTTCATCACAT
196 TAAGGCTTACTTGCACGTGAAGTAGGTCATCCAAGTGGCGTGTGAAATAGGTGGTTTCATCACAC
957978 CTGCTTCAGACTTCTTCAGATAAACCTTGCCTTGACGAGATAAATATGCTCC
261 CTGCTTCAGACTTCTTCAGATAAACCTTGCCTTGACGAGATAAATATGCTCC
958030 TAACGTTCTC
Statistics
Matches: 298, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
320 298 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (320 bp):
GTGAAGAAGCACTGCAGTTGCTCGCTCACACCTTGGATAAAGCTCTTCTCTCTTTTTCCTTGCCT
CTTTTCTTTGGCGGCTACAACTGGTTATTTATAAGGAAAGATCTCGTAGGACTTTGCATGCTTTT
GGAGTTTCCTTAAATAACCGTTATTAAATGCCAAAATTAAAAGGAAAGACAGCTGTCAGAATAAT
TAAGGCTTACTTGCACGTGAAGTAGGTCATCCAAGTGGCGTGTGAAATAGGTGGTTTCATCACAC
CTGCTTCAGACTTCTTCAGATAAACCTTGCCTTGACGAGATAAATATGCTCCAAAAGCAT
Found at i:961396 original size:17 final size:17
Alignment explanation
Indices: 961376--961408 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
961366 GATGAATGGA
*
961376 AAATGATTTTGATTTGG
1 AAATGATTCTGATTTGG
961393 AAATGATTCTGATTTG
1 AAATGATTCTGATTTG
961409 AATTGCATGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.30, C:0.03, G:0.21, T:0.45
Consensus pattern (17 bp):
AAATGATTCTGATTTGG
Found at i:961513 original size:5 final size:5
Alignment explanation
Indices: 961503--961551 Score: 98
Period size: 5 Copynumber: 9.8 Consensus size: 5
961493 CAGGAAGTTG
961503 AGTAA AGTAA AGTAA AGTAA AGTAA AGTAA AGTAA AGTAA AGTAA AGTA
1 AGTAA AGTAA AGTAA AGTAA AGTAA AGTAA AGTAA AGTAA AGTAA AGTA
961552 TGGTACATTC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 44 1.00
ACGTcount: A:0.59, C:0.00, G:0.20, T:0.20
Consensus pattern (5 bp):
AGTAA
Found at i:967294 original size:20 final size:20
Alignment explanation
Indices: 967269--967306 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
967259 CAGAATGCCC
967269 TATGGGTA-CTGATACCCCCT
1 TATGGGTATC-GATACCCCCT
967289 TATGGGTATCGATACCCC
1 TATGGGTATCGATACCCC
967307 TAATTAGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (20 bp):
TATGGGTATCGATACCCCCT
Found at i:973537 original size:14 final size:13
Alignment explanation
Indices: 973500--973526 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
973490 AACTACATAT
973500 TTATTTTCAAACA
1 TTATTTTCAAACA
973513 TTATTTTCAAACA
1 TTATTTTCAAACA
973526 T
1 T
973527 AGTTTTTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.15, G:0.00, T:0.48
Consensus pattern (13 bp):
TTATTTTCAAACA
Found at i:978697 original size:138 final size:139
Alignment explanation
Indices: 978441--978698 Score: 324
Period size: 138 Copynumber: 1.9 Consensus size: 139
978431 ACCGAAGTGC
* * *
978441 CGAAATAGAAATTCATAGACTCATTATGAATTCCATGGATGCACTCATAGTGTCAAAAAGTACAC
1 CGAAATAGAAATTCATAAACTCAGTATGAATACCATGGATGCACTCATAGTGTCAAAAAGTACAC
* * * * *
978506 ATAGTACTGATACGGAAATGCACCATTATGCATTAAACAAAATCGATTGATAACTTTTTTATATA
66 ATAATACTAATACGAAAATGCACCATTATGAATTAAACAAAATCGATCGATAACTTTTTTATATA
978571 ATTTTATAT
131 ATTTTATAT
* * **
978580 CGAAATGGTAATTCATAAACTCAGTATGAATACCAT-GATTGCACATC-TAGTG-CCGAAAGTAC
1 CGAAATAGAAATTCATAAACTCAGTATGAATACCATGGA-TGCAC-TCATAGTGTCAAAAAGTAC
* * * * *
978642 ACATAATACTAATATGAAAATGCATCGTTATGAATTAATCAAAATTGATCGATAACT
64 ACATAATACTAATACGAAAATGCACCATTATGAATTAAACAAAATCGATCGATAACT
978699 ATCATACATG
Statistics
Matches: 100, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
138 57 0.57
139 41 0.41
140 2 0.02
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.31
Consensus pattern (139 bp):
CGAAATAGAAATTCATAAACTCAGTATGAATACCATGGATGCACTCATAGTGTCAAAAAGTACAC
ATAATACTAATACGAAAATGCACCATTATGAATTAAACAAAATCGATCGATAACTTTTTTATATA
ATTTTATAT
Found at i:980753 original size:32 final size:32
Alignment explanation
Indices: 980713--980910 Score: 285
Period size: 32 Copynumber: 6.3 Consensus size: 32
980703 AGAGTCGAGT
* **
980713 ATTACCTATGTCTTTCGGGACATATGGATAAT
1 ATTACCTATGTCTTTCGGGACATATGGACAGG
*
980745 ATTACCTATGTC-TTCCGGACATATGGACAGG
1 ATTACCTATGTCTTTCGGGACATATGGACAGG
**
980776 ATTACCTATGTCTTTCGGGACATATGGACAAT
1 ATTACCTATGTCTTTCGGGACATATGGACAGG
*
980808 ATTATCTATGTCTTTCGGGACATATGGACAGG
1 ATTACCTATGTCTTTCGGGACATATGGACAGG
*
980840 ATTACATATGTCTTTCGGGACATATGGACAGG
1 ATTACCTATGTCTTTCGGGACATATGGACAGG
* *
980872 ATTACCTATGTCTTTTGGGACATATAGACA-G
1 ATTACCTATGTCTTTCGGGACATATGGACAGG
980903 -TTACCTAT
1 ATTACCTAT
980911 ATTTTTAGGA
Statistics
Matches: 150, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
30 8 0.05
31 28 0.19
32 114 0.76
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (32 bp):
ATTACCTATGTCTTTCGGGACATATGGACAGG
Found at i:987528 original size:19 final size:19
Alignment explanation
Indices: 987504--987555 Score: 104
Period size: 19 Copynumber: 2.7 Consensus size: 19
987494 AATATCCTGA
987504 GTGCATCGATGCATGGCTG
1 GTGCATCGATGCATGGCTG
987523 GTGCATCGATGCATGGCTG
1 GTGCATCGATGCATGGCTG
987542 GTGCATCGATGCAT
1 GTGCATCGATGCAT
987556 CAAATGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.17, C:0.21, G:0.35, T:0.27
Consensus pattern (19 bp):
GTGCATCGATGCATGGCTG
Found at i:988085 original size:2 final size:2
Alignment explanation
Indices: 988078--988108 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
988068 AATTGATTAA
988078 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
988109 GCTTAAGCTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:995856 original size:26 final size:26
Alignment explanation
Indices: 995825--995882 Score: 116
Period size: 26 Copynumber: 2.2 Consensus size: 26
995815 ATAGCCTGAG
995825 TGCATCGATGCATGGCTGGTGCATCA
1 TGCATCGATGCATGGCTGGTGCATCA
995851 TGCATCGATGCATGGCTGGTGCATCA
1 TGCATCGATGCATGGCTGGTGCATCA
995877 TGCATC
1 TGCATC
995883 AAATGCATTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.19, C:0.24, G:0.29, T:0.28
Consensus pattern (26 bp):
TGCATCGATGCATGGCTGGTGCATCA
Found at i:998500 original size:137 final size:137
Alignment explanation
Indices: 998247--998502 Score: 343
Period size: 137 Copynumber: 1.9 Consensus size: 137
998237 ACAGAAGTGC
* *
998247 CGAAATGGAAATTCACAAACTCATTATGAATTCCATGGATACACTTATAGTGCCAAAAGTACACA
1 CGAAATGGAAATTCACAAACTCATTATGAATACCATGGATACACATATAGTGCCAAAAGTACACA
* * * * *
998312 TAGCACTGATACGAAAATGCATCGTTATGCATTAAAAAAAATCGATCGATAACTTTTCTAATAAT
66 TAACACTAATACGAAAATGCACCATTATGCATTAAAAAAAATCAATCGATAACTTTTCTAATAAT
998377 TGTAAAT
131 TGTAAAT
* * * * *
998384 CGAAATGGTAATTCATAAACTCATTATGAATACCAT-GATTGCACATCTAGTGTCAAAAGTACAC
1 CGAAATGGAAATTCACAAACTCATTATGAATACCATGGA-TACACATATAGTGCCAAAAGTACAC
* * ** *
998448 ATAATACTAATACGAAAATGTACCATTATGCATTAATCAAAATCAATTGATAACT
65 ATAACACTAATACGAAAATGCACCATTATGCATTAAAAAAAATCAATCGATAACT
998503 ATCATACACG
Statistics
Matches: 101, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
136 2 0.02
137 99 0.98
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (137 bp):
CGAAATGGAAATTCACAAACTCATTATGAATACCATGGATACACATATAGTGCCAAAAGTACACA
TAACACTAATACGAAAATGCACCATTATGCATTAAAAAAAATCAATCGATAACTTTTCTAATAAT
TGTAAAT
Found at i:1001098 original size:28 final size:27
Alignment explanation
Indices: 1001064--1001144 Score: 94
Period size: 28 Copynumber: 2.9 Consensus size: 27
1001054 TTAAAGGATT
1001064 TTTATTTTTATAATTATTAAAATTATAA
1 TTTATTTTTATAATTATTAAAATT-TAA
*
1001092 TTTATTTTTATCATCT-TTAAAGATTTAA
1 TTTATTTTTATAAT-TATTAAA-ATTTAA
*
1001120 TATATTTTT-TAATTATTAATAATTT
1 TTTATTTTTATAATTATTAA-AATTT
1001145 TGAAGGAAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
26 1 0.02
27 11 0.24
28 30 0.65
29 4 0.09
ACGTcount: A:0.37, C:0.02, G:0.01, T:0.59
Consensus pattern (27 bp):
TTTATTTTTATAATTATTAAAATTTAA
Found at i:1001863 original size:29 final size:29
Alignment explanation
Indices: 1001830--1001893 Score: 128
Period size: 29 Copynumber: 2.2 Consensus size: 29
1001820 TGAATATTGT
1001830 TAGTTTTATGATGTGACTCATTAGTAAAA
1 TAGTTTTATGATGTGACTCATTAGTAAAA
1001859 TAGTTTTATGATGTGACTCATTAGTAAAA
1 TAGTTTTATGATGTGACTCATTAGTAAAA
1001888 TAGTTT
1 TAGTTT
1001894 AATTTTTATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.33, C:0.06, G:0.17, T:0.44
Consensus pattern (29 bp):
TAGTTTTATGATGTGACTCATTAGTAAAA
Found at i:1007792 original size:42 final size:42
Alignment explanation
Indices: 1007728--1007812 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
1007718 TGAAATCAAG
*
1007728 TTTTGAAATTACTCCCCTTTACTCTAACACTTAACACTTATC
1 TTTTGAAATTACTCCCCCTTACTCTAACACTTAACACTTATC
*
1007770 TTTTGAAATTACTCCCCCTTACTCTAACATTTAACACTTATC
1 TTTTGAAATTACTCCCCCTTACTCTAACACTTAACACTTATC
1007812 T
1 T
1007813 CTTTTCCCCC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.28, C:0.28, G:0.02, T:0.41
Consensus pattern (42 bp):
TTTTGAAATTACTCCCCCTTACTCTAACACTTAACACTTATC
Found at i:1010117 original size:23 final size:23
Alignment explanation
Indices: 1010087--1010141 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
1010077 ACCCTCATAT
*
1010087 GGGGGTATCAGTACCCATTC-AA
1 GGGGGTATCAGTACCCATGCAAA
*
1010109 GGAGGGTATCAGTGCCCATGCAAA
1 GG-GGGTATCAGTACCCATGCAAA
1010133 GGGGGTATC
1 GGGGGTATC
1010142 GATACATATC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 2 0.07
23 23 0.79
24 4 0.14
ACGTcount: A:0.25, C:0.20, G:0.35, T:0.20
Consensus pattern (23 bp):
GGGGGTATCAGTACCCATGCAAA
Found at i:1014000 original size:22 final size:21
Alignment explanation
Indices: 1013958--1013997 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
1013948 AAGACTGTTT
1013958 TCATTTTTCAATTTTGAAATA
1 TCATTTTTCAATTTTGAAATA
1013979 TCATTTTT-ATATTTTGAAA
1 TCATTTTTCA-ATTTTGAAA
1013998 ATAAAGTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (21 bp):
TCATTTTTCAATTTTGAAATA
Found at i:1015925 original size:20 final size:19
Alignment explanation
Indices: 1015871--1015922 Score: 86
Period size: 19 Copynumber: 2.7 Consensus size: 19
1015861 TTATAAGACT
*
1015871 GGGGTATCGGTACCTCTTG
1 GGGGTATAGGTACCTCTTG
1015890 GGGGTATAGGTACCTCTTG
1 GGGGTATAGGTACCTCTTG
*
1015909 GGGGTATTGGTACC
1 GGGGTATAGGTACC
1015923 CTCCGAGCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.13, C:0.17, G:0.38, T:0.31
Consensus pattern (19 bp):
GGGGTATAGGTACCTCTTG
Found at i:1016004 original size:19 final size:20
Alignment explanation
Indices: 1015964--1016001 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
1015954 ATCTTATATA
1015964 GGGGTATCGGTACCCTCTTG
1 GGGGTATCGGTACCCTCTTG
1015984 GGGGTATCGGTACCCTCT
1 GGGGTATCGGTACCCTCT
1016002 GGGCAATCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.11, C:0.26, G:0.34, T:0.29
Consensus pattern (20 bp):
GGGGTATCGGTACCCTCTTG
Found at i:1016873 original size:54 final size:54
Alignment explanation
Indices: 1016306--1016856 Score: 854
Period size: 54 Copynumber: 10.2 Consensus size: 54
1016296 TATATGTTGC
*
1016306 AATTACCATATTGGCACTATGTGTGCAACCTAAGTAATTCATAATTAGTTTGTG
1 AATTACCGTATTGGCACTATGTGTGCAACCTAAGTAATTCATAATTAGTTTGTG
* *
1016360 AATTACCGTATTGGCACTATGTGTGTAACCTAAGTAATTCGTAATTAGTTTGTG
1 AATTACCGTATTGGCACTATGTGTGCAACCTAAGTAATTCATAATTAGTTTGTG
* * *
1016414 AATTACCGTATTGGCACTATGTGTACAGCCTACGTAATTCATAATTAGTTTGTG
1 AATTACCGTATTGGCACTATGTGTGCAACCTAAGTAATTCATAATTAGTTTGTG
* * *
1016468 AATTACCATATTGGCACTATGTGTACAACCTAAGTAATTCATAATTAGTATGTG
1 AATTACCGTATTGGCACTATGTGTGCAACCTAAGTAATTCATAATTAGTTTGTG
*
1016522 AATTACCGTATTTGCACTATGTGTGCAACCTAAGTAATTCATAATTAGTTTGTG
1 AATTACCGTATTGGCACTATGTGTGCAACCTAAGTAATTCATAATTAGTTTGTG
*
1016576 AATTACCGTATTGGCACTGTGTGTGCAACCTAAGTAATTCATAATTAGTTTGTG
1 AATTACCGTATTGGCACTATGTGTGCAACCTAAGTAATTCATAATTAGTTTGTG
* *
1016630 AATTATCGTATTGGTACTATGTGTGCAACCTAAGTAATTCATAATTAGTTTGTG
1 AATTACCGTATTGGCACTATGTGTGCAACCTAAGTAATTCATAATTAGTTTGTG
* *
1016684 AATTACCATATTGGCACTATGTGTGCAACCTAAGTAATTCATAATGAGTTTGTG
1 AATTACCGTATTGGCACTATGTGTGCAACCTAAGTAATTCATAATTAGTTTGTG
** * * *
1016738 AATTATTGTATCGGCACTATGTGTGCAACCCACA-TAATTCATAATTAGTTTATG
1 AATTACCGTATTGGCACTATGTGTGCAACCTA-AGTAATTCATAATTAGTTTGTG
* * * *
1016792 AATTACTGTATCGGCACTATGTGTGCAACCCACA-TAATTCATAATGAGTTTGTG
1 AATTACCGTATTGGCACTATGTGTGCAACCTA-AGTAATTCATAATTAGTTTGTG
1016846 AATTACCGTAT
1 AATTACCGTAT
1016857 CAGCACCATG
Statistics
Matches: 460, Mismatches: 36, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
54 459 1.00
55 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37
Consensus pattern (54 bp):
AATTACCGTATTGGCACTATGTGTGCAACCTAAGTAATTCATAATTAGTTTGTG
Done.