Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009004.1 Hibiscus syriacus cultivar Beakdansim tig00112388_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81171

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1079--1117
19
2.1
19
85
0
51
5
10
2
82
0.93
1088--1136
19
2.5
20
83
6
55
4
14
2
79
0.97
1073--1147
34
2.2
33
85
4
96
5
13
4
77
1.09
1074--1155
17
4.7
18
71
15
57
4
13
4
76
1.11
1861--1910
19
2.5
20
87
3
66
44
6
18
32
1.74
3136--3187
21
2.6
20
90
6
79
46
5
15
32
1.70
4090--4149
30
2.0
31
83
3
77
55
10
8
26
1.61
5885--5944
19
3.1
19
92
2
93
0
11
10
78
0.97
8502--8646
31
4.7
31
92
0
229
27
20
26
24
1.99
8652--8691
20
1.9
22
85
10
57
42
12
22
22
1.87
9398--9448
26
2.0
26
92
0
84
37
29
5
27
1.80
9670--9719
26
1.9
26
84
8
66
68
16
10
6
1.38
14626--14736
35
3.2
35
87
2
152
27
36
3
32
1.74
15876--15915
19
2.0
20
85
4
55
62
0
15
22
1.32
20095--20132
13
2.9
13
88
0
58
0
21
0
78
0.74
20418--20457
19
2.0
20
85
4
55
62
0
15
22
1.32
24258--24350
35
2.7
35
87
0
141
34
3
35
26
1.73
25868--25901
17
2.0
17
100
0
68
29
23
17
29
1.97
28991--29020
15
2.1
15
93
6
53
0
20
3
76
0.92
34449--34508
22
2.7
22
80
10
59
6
5
6
81
0.98
34471--34508
11
3.4
11
92
3
58
0
5
7
86
0.69
38513--38572
25
2.4
24
75
22
61
73
5
13
8
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39770--39821
19
2.6
21
90
6
81
46
5
13
34
1.67
40730--40788
29
2.0
30
83
3
75
54
10
8
27
1.63
46983--47038
18
3.1
19
76
19
57
78
5
16
0
0.92
47251--47291
16
2.5
17
81
18
52
19
9
2
68
1.29
50191--50247
19
3.0
18
82
10
69
80
1
17
0
0.79
50192--50238
15
3.3
14
85
11
60
80
2
17
0
0.80
50191--50247
10
5.8
10
75
19
57
80
1
17
0
0.79
54775--54826
13
3.8
13
78
12
59
80
1
17
0
0.80
54774--54825
18
2.8
18
86
11
70
80
1
17
0
0.80
54775--54825
5
10.8
5
76
19
56
80
1
17
0
0.81
54774--54829
24
2.3
24
87
6
78
80
1
17
0
0.80
54774--54829
19
3.0
19
80
17
64
80
1
17
0
0.80
74383--74417
16
2.1
17
89
5
54
60
0
34
5
1.21
74625--74657
9
3.8
9
88
8
50
0
15
0
84
0.61
74620--74672
17
3.1
17
86
0
61
1
18
1
77
0.96

Tables:   1

The End!