Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009006.1 Hibiscus syriacus cultivar Beakdansim tig00112390_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52364

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2189--2233
18
2.5
18
92
0
72
17
35
15
31
1.92
7724--7765
22
2.0
22
95
4
77
54
16
0
28
1.42
9608--9641
17
1.9
18
94
5
61
0
11
0
88
0.52
9608--9650
9
4.7
9
88
11
61
0
11
2
86
0.67
9613--9651
17
2.3
17
86
8
53
0
12
2
84
0.72
12370--12409
18
2.2
19
86
4
55
45
2
2
50
1.28
15014--15162
76
1.9
77
87
1
219
51
2
6
38
1.42
20095--20127
13
2.5
13
95
0
57
63
0
3
33
1.10
22066--22113
25
2.0
23
84
8
60
29
25
14
31
1.95
22206--22238
2
16.5
2
87
12
50
45
3
0
51
1.16
22206--22238
17
1.9
17
93
0
57
45
3
0
51
1.16
22230--22279
24
2.0
23
85
11
64
38
8
0
54
1.30
22283--22384
20
5.0
20
81
12
86
48
6
0
45
1.29
22289--22342
2
27.5
2
96
3
101
48
0
0
51
1.00
24605--24634
3
10.0
3
100
0
60
33
0
0
66
0.92
25107--25180
37
2.0
37
97
0
139
64
2
17
14
1.40
25107--25164
18
3.2
18
68
22
57
65
1
18
13
1.35
25297--25329
15
2.1
16
88
5
50
75
0
0
24
0.80
28559--28656
36
2.7
35
82
3
106
20
54
4
21
1.61
28986--29026
21
2.0
21
85
0
55
21
58
4
14
1.55
28990--29047
27
2.1
27
87
0
80
22
58
5
13
1.55
30634--30661
14
2.0
14
100
0
56
7
14
21
57
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30621--30685
24
2.6
24
85
4
76
15
12
15
56
1.67
33357--33453
5
17.8
5
76
16
86
8
22
50
18
1.73
33362--33454
17
5.9
17
80
12
101
9
22
49
18
1.76
33350--33436
22
4.0
22
100
0
174
9
22
49
18
1.76
33450--33547
9
10.3
9
77
12
81
28
27
27
16
1.97
33452--33548
19
5.1
19
78
15
92
28
27
25
17
1.98
33451--33547
29
3.4
28
78
14
92
28
27
26
16
1.97
40688--40767
5
14.8
5
75
14
70
8
22
50
18
1.74
40681--40767
22
4.0
22
96
0
165
10
22
48
18
1.78
40715--40780
17
3.6
17
86
13
80
9
22
50
18
1.75
40693--40780
39
2.3
38
84
9
108
10
22
48
18
1.77
40737--40780
17
2.6
17
96
3
81
9
22
50
18
1.75
40778--40874
9
10.4
9
79
6
86
28
28
25
16
1.97
40778--40874
27
3.5
27
82
4
104
28
28
25
16
1.97
40837--40875
21
1.9
21
89
5
62
33
23
25
17
1.96
41758--41808
26
2.0
26
88
0
75
31
17
15
35
1.92
44362--44423
20
3.1
20
97
0
115
16
45
9
29
1.79
45961--46023
6
10.5
6
77
19
69
47
0
0
52
1.00
45965--46023
25
2.5
23
94
5
100
47
0
0
52
1.00
45986--46031
11
4.2
10
82
17
56
43
0
2
54
1.12
46175--46224
15
3.6
14
74
17
50
40
4
4
52
1.39
46543--46598
29
1.9
29
85
0
76
42
7
17
32
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47158--47205
21
2.3
21
92
3
80
29
8
16
45
1.76
51400--51437
20
1.9
20
94
0
67
52
10
18
18
1.73

Tables:   1

The End!