genome.fa.s9007.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009007.1 Hibiscus syriacus cultivar Beakdansim tig00112392_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93860

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5194--5290	5	17.8	5	74	16	77	9	22	49	18	1.76
5221--5291	17	3.9	17	89	10	97	9	22	49	18	1.77
5187--5290	39	2.5	39	92	7	163	10	23	48	18	1.79
5187--5273	22	4.0	22	96	0	165	10	22	48	18	1.78
5289--5386	19	5.1	19	80	13	101	28	27	26	17	1.98
5287--5385	9	10.3	9	80	10	90	28	27	28	16	1.97
5288--5385	29	3.4	28	85	5	124	28	27	27	16	1.97
6281--6331	26	2.0	26	88	0	75	31	17	15	35	1.92
8926--8987	20	3.1	20	97	0	115	16	45	9	29	1.79
10555--10599	13	3.5	13	77	17	58	48	0	0	51	1.00
10543--10603	25	2.4	25	100	0	122	47	0	0	52	1.00
10539--10586	6	7.8	6	82	13	62	50	0	0	50	1.00
11749--11797	21	2.3	21	96	0	89	28	8	16	46	1.75
13206--14356	588	2.0	585	98	0	2239	31	10	17	39	1.85
16064--16101	20	1.9	20	94	0	67	52	10	18	18	1.73
16064--16121	20	3.3	17	84	15	66	53	8	18	18	1.70
17420--17493	3	24.7	3	89	5	114	31	0	1	67	0.99
17896--18004	31	3.5	31	96	1	193	59	14	25	0	1.35
18096--18140	19	2.4	19	100	0	90	33	33	24	8	1.86
18955--19015	21	2.9	21	80	7	61	49	0	0	50	1.00
22982--23014	15	2.1	16	88	5	50	24	21	9	45	1.80
30343--30405	23	2.7	23	83	13	85	77	0	22	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30346--30401	12	4.9	11	77	18	53	80	0	19	0	0.71
30345--30403	8	6.6	8	78	17	55	81	0	18	0	0.69
30345--30403	28	2.2	26	87	6	82	81	0	18	0	0.69
30716--30760	16	2.8	16	83	10	56	28	8	6	55	1.56
31549--32100	83	6.7	83	98	0	1050	26	13	22	37	1.91
32979--33503	113	4.7	113	87	3	729	37	13	19	28	1.90
33430--33485	17	3.2	17	69	18	51	50	8	21	19	1.75
33468--33622	84	1.8	84	83	0	202	38	16	16	29	1.91
33816--33876	3	20.7	3	93	3	106	32	0	1	65	1.02
34273--34355	31	2.7	31	92	3	132	60	15	24	0	1.35
35312--35351	12	3.1	13	82	10	55	40	0	0	60	0.97
42854--42880	13	2.1	13	100	0	54	37	14	25	22	1.93
51413--51450	19	2.0	19	100	0	76	26	15	10	47	1.78
52227--52274	23	2.1	23	88	0	69	35	12	18	33	1.89
52692--52743	23	2.3	22	90	6	77	44	19	1	34	1.62
52702--52764	23	2.7	23	90	0	90	38	19	6	36	1.77
53051--53116	25	2.6	25	80	0	87	42	13	9	34	1.76
55577--56469	183	4.9	183	97	0	1621	33	16	14	35	1.89
55577--56469	365	2.4	365	96	0	1626	33	16	14	35	1.89
57884--57925	3	14.0	3	84	0	57	26	33	4	35	1.77
57884--57929	12	3.8	12	94	0	74	26	32	6	34	1.82
57885--57937	12	4.4	12	92	0	70	22	33	7	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59401--60747	197	6.9	198	89	6	2124	31	16	16	35	1.91
60110--60489	184	2.1	184	96	2	710	31	17	15	35	1.91
60293--60753	200	2.3	200	97	1	872	29	16	18	35	1.93
60866--60913	19	2.6	19	93	3	80	56	10	2	31	1.45
62690--62755	33	2.0	33	87	0	96	24	48	0	27	1.51
62788--62829	21	2.0	21	85	0	57	14	30	16	38	1.89
65059--65101	20	2.3	18	85	14	61	20	16	11	51	1.75
65064--65110	20	2.4	19	82	10	67	19	17	10	53	1.72
65233--65292	20	3.0	20	83	13	79	18	15	13	53	1.73
68379--68412	2	17.0	2	100	0	68	50	0	0	50	1.00
68747--68771	3	8.3	3	100	0	50	32	0	0	68	0.90
69281--69394	60	1.9	60	85	0	156	40	12	13	34	1.81
69281--69417	60	2.3	60	82	5	152	37	12	14	35	1.84
70356--70495	5	28.0	5	100	0	280	40	0	0	60	0.97
72523--72574	22	2.4	22	90	0	77	38	23	17	21	1.93
72523--72582	22	2.7	22	80	10	68	40	23	15	21	1.91
73098--73190	32	2.9	31	85	3	114	34	17	17	31	1.93
74935--74985	26	2.0	25	85	11	68	64	0	29	5	1.17
76844--76888	20	2.3	20	88	3	65	46	2	15	35	1.58
76866--77042	90	2.0	90	95	0	318	30	3	28	37	1.73
78819--78977	20	8.0	20	86	0	221	47	6	18	27	1.72
78821--78977	60	2.6	60	91	1	253	48	5	17	28	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87202--87239	20	1.9	19	94	5	67	36	10	28	23	1.88
88476--88508	16	2.1	16	100	0	66	42	12	18	27	1.85
89992--90069	29	2.7	28	71	15	70	33	14	6	46	1.70
93236--93345	31	3.5	31	80	6	116	30	20	17	31	1.96
93328--93406	31	2.5	31	85	2	104	31	16	13	37	1.88

Tables:   1

The End!