genome.fa.s9008.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009008.1 Hibiscus syriacus cultivar Beakdansim tig00112393_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86904

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7627--7751	60	2.1	60	86	3	171	36	15	14	34	1.88
8544--8727	60	3.1	59	77	3	181	33	20	6	40	1.78
11432--11499	31	2.2	31	89	2	100	30	5	4	58	1.41
17600--17631	13	2.5	13	100	0	64	46	6	0	46	1.27
27455--27500	21	2.2	21	92	0	74	39	21	34	4	1.73
30795--30993	93	2.1	93	85	5	265	19	22	13	44	1.85
30919--30983	34	1.9	34	87	0	94	20	21	13	44	1.86
44754--45290	177	3.0	177	98	0	1011	27	21	15	35	1.94
46741--46779	2	19.5	2	83	0	51	41	0	5	53	1.23
46745--46783	12	3.2	12	85	0	51	38	0	5	56	1.22
49301--49342	14	3.0	14	100	0	84	35	7	14	42	1.73
58934--59042	48	2.3	48	75	0	110	48	16	11	22	1.79
61528--61567	7	5.4	7	88	11	62	25	27	35	12	1.92
61529--61627	8	13.5	8	72	24	76	19	23	42	15	1.88
61529--61567	15	2.6	15	100	0	78	25	25	35	12	1.92
61557--61632	13	5.5	13	82	14	98	14	22	47	15	1.82
61557--61619	31	2.0	31	96	0	117	14	22	47	15	1.81
61564--61636	31	2.4	29	84	13	85	13	20	49	16	1.79
61551--61605	18	2.9	18	91	8	83	14	21	47	16	1.82
63763--63871	48	2.3	48	75	0	110	48	16	11	22	1.79
66355--66425	8	9.5	8	70	23	57	16	23	43	15	1.87
66368--66430	13	4.5	13	81	18	81	12	23	47	15	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66368--66434	31	2.2	31	100	0	134	11	22	49	16	1.78
66362--66417	18	2.9	18	92	7	85	14	23	46	16	1.83
68556--68664	48	2.3	48	75	0	110	48	16	11	22	1.79
71168--71235	13	4.8	13	80	16	82	13	22	48	16	1.80
71149--71239	44	2.1	42	88	12	130	14	20	48	16	1.81
71155--71239	31	2.7	31	78	20	113	12	21	49	16	1.79
71155--71208	18	3.0	18	100	0	108	11	22	50	16	1.77
73289--73368	35	2.3	35	86	4	108	42	22	1	33	1.62
73530--73978	148	3.0	149	90	3	681	36	6	9	46	1.62
74478--74590	35	3.2	35	88	0	163	31	2	23	42	1.68
80485--80515	2	15.5	2	100	0	62	48	0	0	51	1.00

Tables:   1

The End!