genome.fa.s9009.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009009.1 Hibiscus syriacus cultivar Beakdansim tig00112395_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  196393

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
430--480	17	3.0	17	91	8	86	11	23	47	17	1.81
458--507	13	3.8	13	94	0	91	14	22	48	16	1.81
2544--2623	35	2.3	35	86	4	108	42	22	1	33	1.62
2785--3233	148	3.0	149	90	3	681	36	6	9	46	1.62
3733--3845	35	3.2	35	88	0	163	31	2	23	42	1.68
9753--9782	2	15.0	2	100	0	60	50	0	0	50	1.00
15718--15770	23	2.4	22	81	12	63	35	0	3	60	1.15
19877--19916	14	3.1	14	82	13	50	45	0	0	55	0.99
27929--28370	235	1.9	234	90	2	701	27	11	19	41	1.86
37334--37525	95	2.0	95	88	2	287	43	10	13	32	1.78
39753--39821	29	2.3	30	80	9	79	39	7	15	37	1.76
42785--42847	22	2.9	22	95	2	110	31	0	25	42	1.55
51051--51111	5	12.6	5	94	1	54	0	40	31	27	1.57
51062--51110	10	4.9	10	94	0	62	0	40	32	26	1.56
51059--51110	15	3.5	15	91	0	68	0	40	32	26	1.57
51108--51246	6	23.2	6	98	0	206	5	16	49	28	1.68
51524--51578	22	2.5	22	75	0	56	29	9	23	38	1.85
57114--57152	5	7.8	5	91	0	51	2	41	33	23	1.68
57150--57228	6	13.2	6	97	0	140	2	16	49	31	1.59
57505--57559	22	2.5	22	75	0	56	29	9	23	38	1.85
65268--65318	24	2.2	24	82	10	61	43	1	1	52	1.23
65459--65523	22	3.0	22	81	4	60	49	1	3	46	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78586--78650	2	33.0	2	96	3	123	49	0	0	50	1.00
78759--78853	30	3.2	29	82	4	120	21	24	35	18	1.95
78841--78867	14	1.9	14	100	0	54	22	22	29	25	1.99
79003--79082	34	2.3	34	93	2	133	41	12	10	36	1.76
79492--79537	11	3.8	11	81	18	56	63	0	36	0	0.95
79477--79539	14	4.6	14	83	16	78	61	0	38	0	0.96
80931--80964	14	2.5	13	86	9	50	52	0	0	47	1.00
80941--80978	20	1.9	19	89	5	58	50	0	0	50	1.00
82176--82215	17	2.5	15	88	8	53	52	2	0	45	1.14
85707--85760	15	3.5	15	87	5	72	0	44	0	55	0.99
86153--86233	34	2.4	34	93	2	135	37	7	12	43	1.70
86353--86490	29	4.8	29	77	5	145	19	34	23	21	1.96
87123--87200	40	2.0	40	97	0	147	32	10	16	41	1.82
87618--87713	35	2.7	35	88	3	140	39	28	2	30	1.68
87879--88166	147	2.0	147	93	2	490	36	5	9	48	1.59
87879--88176	146	2.0	147	90	3	476	36	5	9	48	1.58
88706--88779	35	2.1	35	92	5	123	35	0	21	43	1.53
100445--100500	27	2.1	27	86	0	76	41	28	1	28	1.66
101683--101729	2	23.5	2	100	0	94	51	0	0	48	1.00
104680--104751	15	4.9	15	82	3	101	41	6	19	31	1.78
104680--104751	30	2.4	30	97	2	137	41	6	19	31	1.78
104734--104803	20	3.5	20	94	0	122	41	10	12	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104969--105072	28	3.5	28	76	22	90	51	1	0	45	1.18
105022--105116	28	3.2	28	72	14	75	47	1	1	50	1.15
105086--105129	22	2.0	23	86	4	63	54	0	0	45	0.99
105090--105146	21	2.6	22	81	10	64	52	0	0	47	1.00
105027--105146	54	2.3	50	76	20	122	50	0	0	48	1.12
105335--105454	42	2.9	42	94	0	204	45	18	19	17	1.86
105859--106005	60	2.5	60	84	2	179	30	27	5	36	1.79
106224--106385	60	2.7	59	78	6	159	43	4	19	32	1.73
107271--107344	31	2.4	31	88	0	112	31	5	8	55	1.52
107394--107426	14	2.4	14	94	0	57	39	18	6	36	1.75
108890--108929	20	2.0	20	90	0	62	22	27	2	47	1.64
108910--109301	42	9.2	41	76	11	299	26	19	6	47	1.74
108923--109276	129	2.7	128	77	12	352	25	19	6	47	1.74
108959--109247	85	3.4	83	76	12	248	26	19	6	47	1.73
108923--109161	127	1.9	129	83	8	319	25	19	7	48	1.74
111527--111562	2	18.0	2	100	0	72	50	0	0	50	1.00
117862--118013	60	2.5	60	82	6	166	32	21	3	42	1.71
118139--118321	60	3.1	60	80	7	160	37	5	24	32	1.78
118178--118321	59	2.4	60	85	1	191	38	4	22	34	1.74
123218--123283	14	4.6	14	80	16	73	42	18	0	39	1.50
123224--123277	21	2.6	21	79	5	56	44	14	0	40	1.46
123218--123283	28	2.3	28	89	2	96	42	18	0	39	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125198--125269	35	2.1	35	89	0	108	27	9	13	48	1.74
125810--125846	3	12.7	3	94	5	67	67	0	0	32	0.91
133725--133837	3	37.7	3	92	0	181	33	4	0	61	1.16
133836--133871	13	2.8	13	87	4	56	63	0	0	36	0.94
135031--135073	22	2.0	21	86	4	59	37	2	2	58	1.24
137402--137455	14	3.8	14	82	4	63	24	14	9	51	1.71
143037--143226	94	2.0	94	90	2	301	30	14	20	35	1.92
145896--145949	23	2.4	23	87	3	83	35	12	12	38	1.82
146391--147481	113	9.7	113	89	2	1557	38	14	18	28	1.90
147796--147903	3	36.0	3	96	0	198	33	1	0	64	1.04
147902--147936	14	2.4	15	95	4	63	62	0	0	37	0.95
148345--148386	22	1.9	22	100	0	84	66	4	28	0	1.12
151505--151543	19	2.0	21	85	14	57	33	0	2	64	1.08
152622--152682	23	2.6	24	81	2	79	59	18	8	14	1.60
152868--152901	14	2.4	14	90	0	59	55	14	11	17	1.68
153568--153593	3	8.7	3	100	0	52	30	0	0	69	0.89
153696--153732	17	2.2	18	85	9	51	40	0	0	59	0.97
164301--164365	34	1.9	34	93	0	112	43	13	15	27	1.85
166989--167039	23	2.2	23	89	0	75	39	5	17	37	1.74
166998--167041	23	1.9	23	100	0	88	40	4	15	38	1.68
167113--167163	23	2.2	22	89	0	66	35	5	21	37	1.78
166989--167237	124	2.0	124	94	0	435	44	9	14	31	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
170335--170657	142	2.2	144	93	2	551	25	20	16	37	1.93
170335--170660	145	2.3	142	92	3	456	26	20	16	36	1.94
183280--183314	15	2.3	15	90	0	52	5	8	34	51	1.56
184558--184648	24	3.8	23	75	13	69	42	2	2	52	1.25
184601--184667	23	2.9	22	84	6	71	46	0	1	52	1.09
184627--184716	31	2.9	31	75	17	87	46	2	2	48	1.26
184652--184700	23	2.1	23	85	7	64	53	4	0	42	1.20
190309--190333	10	2.5	10	100	0	50	20	0	8	72	1.10

Tables:   1

The End!