genome.fa.s901.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000901.1 Hibiscus syriacus cultivar Beakdansim tig00001769_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118845

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454--491	11	3.5	11	89	7	60	73	5	0	21	1.02
455--488	10	3.3	10	91	4	50	73	5	0	20	1.04
446--491	21	2.2	21	88	0	65	73	4	0	21	1.00
522--593	34	2.1	34	87	5	101	51	2	0	45	1.15
594--641	24	2.0	24	88	8	71	35	10	10	43	1.73
619--719	37	2.8	36	82	7	107	42	8	3	44	1.54
684--747	29	2.2	29	86	8	85	43	9	4	42	1.57
740--860	35	3.5	34	78	11	120	43	9	3	43	1.52
1480--2617	83	13.7	83	77	6	1018	25	18	24	31	1.98
1483--2617	166	6.8	168	79	7	1138	25	18	24	31	1.98
3739--3964	82	2.6	87	77	15	239	30	20	19	29	1.97
3796--3976	94	1.9	94	88	4	276	29	20	18	32	1.96
5875--5905	14	2.2	14	94	0	53	45	22	9	22	1.81
6496--6530	12	2.9	12	84	16	54	74	0	8	17	1.06
6503--6587	39	2.2	40	78	6	93	72	2	4	20	1.13
7902--7941	17	2.5	17	88	8	57	77	2	0	20	0.88
8000--8084	29	2.9	29	77	13	93	44	3	3	48	1.37
8065--8113	24	2.0	25	84	11	66	38	10	8	42	1.68
8102--8298	36	5.7	34	74	17	126	43	9	3	44	1.51
8374--8429	2	28.5	2	96	3	105	50	0	0	50	1.00
8589--8639	24	2.1	24	85	7	68	41	5	1	50	1.37
8422--9181	379	2.0	378	92	4	1275	34	10	9	45	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18927--19045	56	2.1	57	95	3	215	54	7	11	26	1.63
37070--37115	22	2.1	22	100	0	92	54	21	8	15	1.68
48295--48334	14	2.8	14	92	3	62	62	2	5	30	1.29
51922--51954	16	2.1	16	94	0	57	42	21	3	33	1.68
53052--53101	17	2.9	17	77	17	59	40	2	4	54	1.31
54483--54523	21	1.9	22	85	5	57	53	2	31	12	1.51
56712--56767	29	2.0	27	93	6	94	25	7	23	44	1.78
69047--69143	15	6.5	15	90	2	151	37	7	19	36	1.80
69042--69143	30	3.4	30	93	1	179	39	6	19	34	1.79
69126--69195	20	3.5	20	96	0	131	40	10	14	35	1.79
69362--69427	28	2.3	27	82	12	78	51	1	1	45	1.19
69421--69481	23	2.7	23	82	12	65	44	1	1	52	1.20
69474--69517	22	2.0	23	86	4	63	54	0	0	45	0.99
69478--69534	21	2.6	22	81	10	64	52	0	0	47	1.00
69418--69548	52	2.5	53	79	12	142	48	0	0	50	1.11
69696--69816	42	2.8	43	92	1	190	46	19	16	18	1.85
69900--69985	31	2.9	29	71	19	86	38	8	2	51	1.45
69888--70057	60	2.8	60	80	3	173	34	17	4	43	1.69
70046--70129	29	2.9	29	96	0	150	33	25	5	35	1.80
73049--73110	19	3.2	19	69	13	54	37	1	1	59	1.17
73301--73343	16	2.7	16	92	0	77	41	4	18	34	1.71
74511--74544	8	4.2	8	92	0	50	29	11	23	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74539--74563	8	3.1	8	100	0	50	36	24	12	28	1.91
77151--77175	2	12.5	2	100	0	50	52	0	0	48	1.00
80919--80960	14	3.1	15	83	16	56	54	0	0	45	0.99
80932--80960	2	15.0	2	92	7	51	51	0	0	48	1.00
88416--88443	2	14.0	2	100	0	56	50	0	0	50	1.00
89751--89777	12	2.2	12	100	0	54	66	18	0	14	1.25
96285--96735	39	11.7	39	87	2	513	28	18	15	37	1.91
96603--96710	36	3.0	35	83	5	135	24	17	15	42	1.88
96660--96827	75	2.3	74	79	5	178	30	19	13	36	1.90
100274--100323	25	2.0	25	92	0	82	46	22	8	24	1.78
103003--103049	24	2.0	24	91	0	76	36	17	19	27	1.93
103009--103058	24	2.1	24	84	0	64	38	20	18	24	1.93
103786--103823	16	2.5	15	88	12	60	68	0	2	28	1.03
103960--104006	18	2.6	18	82	3	58	31	14	23	29	1.95
104000--104058	21	2.8	21	84	0	73	35	10	20	33	1.86
103981--104058	42	1.9	40	89	5	120	34	10	20	34	1.87
105937--105973	5	7.4	5	100	0	74	40	0	40	18	1.51
114853--114923	36	2.0	36	91	2	117	33	7	5	53	1.51
114972--115242	141	1.9	139	87	7	395	41	7	9	42	1.64
116225--116266	17	2.4	18	80	4	50	71	2	4	21	1.16
116263--116287	10	2.5	10	100	0	50	52	0	0	48	1.00

Tables:   1

The End!