genome.fa.s9010.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009010.1 Hibiscus syriacus cultivar Beakdansim tig00112396_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114646

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6185--6229	23	2.0	23	90	0	72	48	8	8	33	1.65
8498--8620	45	2.8	45	84	1	167	41	8	20	30	1.81
11138--11194	26	2.2	26	93	0	96	36	5	19	38	1.74
18324--18363	19	2.1	19	100	0	80	32	17	25	25	1.97
19062--19120	20	3.1	19	72	16	50	25	20	27	27	1.99
19372--19412	2	20.5	2	94	0	73	46	0	0	53	1.00
19972--20048	39	2.0	39	86	0	109	28	9	20	41	1.83
20762--20808	22	2.2	20	82	14	58	72	14	0	12	1.13
25015--25119	31	3.5	30	82	7	133	40	9	11	38	1.74
25015--25120	28	3.6	28	83	7	106	40	9	11	38	1.74
25203--25302	29	3.4	29	78	5	101	40	10	9	41	1.70
25406--25487	43	1.9	42	87	7	121	50	20	2	26	1.61
26536--26608	2	35.5	2	77	10	58	39	4	4	52	1.40
27064--27102	4	9.8	4	100	0	78	23	0	0	76	0.78
40064--40110	20	2.4	21	80	16	57	42	6	0	51	1.27
40036--40128	42	2.2	41	81	5	107	46	4	1	48	1.29
40777--40901	67	1.9	67	86	5	182	30	17	9	42	1.81
41946--42439	258	1.9	258	83	4	631	48	6	12	32	1.67
44216--44392	64	2.8	64	91	1	266	33	20	18	27	1.96
45049--45111	31	2.0	31	87	6	92	19	19	23	38	1.93
48267--48473	64	3.2	64	87	4	267	33	19	17	28	1.95
49910--49955	23	2.1	21	88	8	65	58	0	2	39	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50151--50600	124	3.6	123	90	2	686	27	16	24	31	1.96
50443--51424	253	3.9	249	76	11	988	25	18	23	32	1.97
55164--55197	7	5.0	7	85	7	52	67	0	0	32	0.91
55166--55190	13	1.9	13	100	0	50	64	0	0	36	0.94
55164--55207	20	2.2	20	95	0	79	65	0	0	34	0.93
55573--55628	28	2.0	28	89	0	85	17	7	25	50	1.72
55601--55760	41	3.8	41	81	4	160	25	17	16	41	1.89
55610--55760	43	3.6	43	82	5	184	25	18	15	39	1.91
58994--59038	23	2.0	23	86	0	63	24	24	26	24	2.00
59006--59318	149	2.1	147	95	2	556	34	20	15	28	1.94
60316--60346	16	1.9	16	93	0	53	51	16	0	32	1.44
60651--60753	44	2.3	44	84	0	125	29	15	20	34	1.93
63958--64002	23	2.0	23	90	0	72	24	26	26	22	2.00
63970--64284	149	2.1	149	97	1	596	34	20	16	28	1.94
65282--65312	16	1.9	16	93	0	53	51	16	0	32	1.44
65602--65756	63	2.5	63	85	0	193	27	21	19	31	1.97
66772--66823	22	2.4	22	100	0	104	38	0	3	57	1.17
66784--66848	11	6.1	11	75	5	62	47	1	1	49	1.20
67258--67716	41	11.2	41	81	4	471	34	18	18	28	1.95
69179--69215	2	18.5	2	94	0	65	51	0	0	48	1.00
78102--78208	39	2.6	41	76	16	105	32	12	16	38	1.86
79931--79958	4	7.0	4	100	0	56	25	0	25	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82652--82691	11	3.8	11	80	12	57	42	2	0	55	1.13
82651--82699	20	2.5	20	93	6	82	38	4	2	55	1.31
84338--84380	18	2.7	15	76	16	50	55	0	0	44	0.99
100049--100110	21	2.9	21	87	2	88	17	24	37	20	1.94
106711--106843	63	2.1	63	91	0	221	27	15	28	28	1.96
112908--112982	38	2.0	37	82	10	91	49	4	1	45	1.29

Tables:   1

The End!