Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009012.1 Hibiscus syriacus cultivar Beakdansim tig00112400_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 359633
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
File 1 of 2
Found at i:2275 original size:20 final size:20
Alignment explanation
Indices: 2186--2277 Score: 76
Period size: 20 Copynumber: 4.5 Consensus size: 20
2176 TGCGAATTTG
* *
2186 GAAAATCGCAATGCGATACT
1 GAAAATCGCAACGAGATACT
** *
2206 GACTATCGCAACGAGATAAT
1 GAAAATCGCAACGAGATACT
* *
2226 ACAAAATCGCAACGAGATTCT
1 -GAAAATCGCAACGAGATACT
*** *
2247 GACTTTCGCAACGAGATTCT
1 GAAAATCGCAACGAGATACT
2267 GAAAATCGCAA
1 GAAAATCGCAA
2278 TCATCTTCAA
Statistics
Matches: 54, Mismatches: 17, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
20 39 0.72
21 15 0.28
ACGTcount: A:0.39, C:0.22, G:0.18, T:0.21
Consensus pattern (20 bp):
GAAAATCGCAACGAGATACT
Found at i:2648 original size:18 final size:18
Alignment explanation
Indices: 2603--2648 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
2593 TGATTTCTCG
*
2603 TTGCGATTTTCATTTCGTA
1 TTGCGA-TTTCATTTCGCA
* *
2622 ATGCAATTTCATTTCGCA
1 TTGCGATTTCATTTCGCA
2640 TTGCGATTT
1 TTGCGATTT
2649 TCTCGTTGCG
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
18 18 0.82
19 4 0.18
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.48
Consensus pattern (18 bp):
TTGCGATTTCATTTCGCA
Found at i:4156 original size:19 final size:19
Alignment explanation
Indices: 4129--4264 Score: 85
Period size: 19 Copynumber: 7.6 Consensus size: 19
4119 AAGCAACAAA
*
4129 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
4148 TCGCGTTGCGA-TTT--TG
1 TCGCGTTGCGATTTTCATT
4164 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* *
4181 TCGCATTGCGA-TTT--TG
1 TCGCGTTGCGATTTTCATT
4197 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* ***
4214 TCGCATTGCGATAGCCATT
1 TCGCGTTGCGATTTTCATT
**
4233 TCCGCGTTGCGATAGTCATTT
1 T-CGCGTTGCGATTTTCA-TT
*
4254 TCGTGTTGCGA
1 TCGCGTTGCGA
4265 AAGTAAACTA
Statistics
Matches: 91, Mismatches: 14, Indels: 23
0.71 0.11 0.18
Matches are distributed among these distances:
14 15 0.16
15 6 0.07
16 4 0.04
17 4 0.04
18 6 0.07
19 30 0.33
20 23 0.25
21 3 0.03
ACGTcount: A:0.13, C:0.21, G:0.23, T:0.43
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:4170 original size:14 final size:14
Alignment explanation
Indices: 4151--4209 Score: 64
Period size: 14 Copynumber: 3.9 Consensus size: 14
4141 TTTCATTTCG
4151 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
4165 CGTTGCGATTTTCATTT
1 CGTTGCGA-TTT--TGT
4182 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
4198 CGTTGCGATTTT
1 CGTTGCGATTTT
4210 CATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
14 18 0.47
15 3 0.08
16 4 0.11
17 4 0.11
18 3 0.08
19 6 0.16
ACGTcount: A:0.10, C:0.17, G:0.24, T:0.49
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:4176 original size:33 final size:33
Alignment explanation
Indices: 4134--4225 Score: 175
Period size: 33 Copynumber: 2.8 Consensus size: 33
4124 ACAAATCGCA
*
4134 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
4167 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
4200 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGAT
4226 AGCCATTTCC
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 58 1.00
ACGTcount: A:0.12, C:0.18, G:0.22, T:0.48
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTGTCG
Found at i:4244 original size:20 final size:19
Alignment explanation
Indices: 4210--4264 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
4200 TTGCGATTTT
*
4210 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
4229 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
4249 CATTTTCGTGTTGCGA
1 CA-TTTCGCGTTGCGA
4265 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:4830 original size:18 final size:18
Alignment explanation
Indices: 4807--4852 Score: 92
Period size: 18 Copynumber: 2.6 Consensus size: 18
4797 GGTCGATCAA
4807 GTGATGGCTCTGGGTGAG
1 GTGATGGCTCTGGGTGAG
4825 GTGATGGCTCTGGGTGAG
1 GTGATGGCTCTGGGTGAG
4843 GTGATGGCTC
1 GTGATGGCTC
4853 CCGAAGTGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.11, C:0.13, G:0.48, T:0.28
Consensus pattern (18 bp):
GTGATGGCTCTGGGTGAG
Found at i:6517 original size:22 final size:22
Alignment explanation
Indices: 6490--6533 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
6480 GATGGAGATA
6490 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
6512 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
6534 TGAGAGAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:6751 original size:20 final size:20
Alignment explanation
Indices: 6726--6790 Score: 94
Period size: 20 Copynumber: 3.2 Consensus size: 20
6716 GTATTATCTC
*
6726 GTTGCGAAAGTCAGTATTGA
1 GTTGCGAAAGTCAGTATCGA
* *
6746 GTTGCGAAATTAAGTATCGA
1 GTTGCGAAAGTCAGTATCGA
*
6766 GTTGCGAAAGTCAGTATCGC
1 GTTGCGAAAGTCAGTATCGA
6786 GTTGC
1 GTTGC
6791 AATTTTGTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.29
Consensus pattern (20 bp):
GTTGCGAAAGTCAGTATCGA
Found at i:6819 original size:41 final size:41
Alignment explanation
Indices: 6700--6837 Score: 136
Period size: 41 Copynumber: 3.4 Consensus size: 41
6690 CGCTTTGAAA
* * * *
6700 ATCGCATTGCGATTATGTATTATCTCGTTGCGAAAGTCAGT
1 ATCGCGTTGCAATTTTGTATTATCGCGTTGCGAAAGTCAGT
* * * * * *
6741 ATTGAGTTGCGAA-ATT-AAGTATCGAGTTGCGAAAGTCAGT
1 ATCGCGTTGC-AATTTTGTATTATCGCGTTGCGAAAGTCAGT
*
6781 ATCGCGTTGCAATTTTGTATTATCGCGTTGCGATAGTCAGT
1 ATCGCGTTGCAATTTTGTATTATCGCGTTGCGAAAGTCAGT
* *
6822 ACCGCGTTGCGATTTT
1 ATCGCGTTGCAATTTT
6838 CCAAATTCGC
Statistics
Matches: 75, Mismatches: 19, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
39 2 0.03
40 30 0.40
41 42 0.56
42 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.36
Consensus pattern (41 bp):
ATCGCGTTGCAATTTTGTATTATCGCGTTGCGAAAGTCAGT
Found at i:6853 original size:41 final size:41
Alignment explanation
Indices: 6767--6855 Score: 99
Period size: 41 Copynumber: 2.2 Consensus size: 41
6757 AAGTATCGAG
* * ** * *
6767 TTGCGAAAGTCAGTATCGCGTTGCAATTTTGTATTATCGCG
1 TTGCGATAGTCAGTACCGCGTTGCAATTTTCAAATATCGCA
*
6808 TTGCGATAGTCAGTACCGCGTTGCGATTTTCCAAAT-TCGCA
1 TTGCGATAGTCAGTACCGCGTTGCAATTTT-CAAATATCGCA
6849 TTGCGAT
1 TTGCGAT
6856 TTACTTATTC
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
41 38 0.95
42 2 0.05
ACGTcount: A:0.21, C:0.20, G:0.24, T:0.35
Consensus pattern (41 bp):
TTGCGATAGTCAGTACCGCGTTGCAATTTTCAAATATCGCA
Found at i:6916 original size:21 final size:22
Alignment explanation
Indices: 6868--6916 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
6858 ACTTATTCGT
6868 ATTGCG-AATTGGGAAAATCGC
1 ATTGCGAAATTGGGAAAATCGC
**
6889 AACGCGAAATT-GGAAAATCGC
1 ATTGCGAAATTGGGAAAATCGC
6910 ATTGCGA
1 ATTGCGA
6917 TAGTCATAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.37, C:0.16, G:0.27, T:0.20
Consensus pattern (22 bp):
ATTGCGAAATTGGGAAAATCGC
Found at i:17758 original size:3 final size:3
Alignment explanation
Indices: 17739--17797 Score: 102
Period size: 3 Copynumber: 20.0 Consensus size: 3
17729 ATGTAAAATG
*
17739 TAA TAT TAA TAA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
17786 TAA TAA TAA TAA
1 TAA TAA TAA TAA
17798 ATATATATAA
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
2 2 0.04
3 51 0.96
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:18164 original size:43 final size:42
Alignment explanation
Indices: 18040--18294 Score: 138
Period size: 43 Copynumber: 5.8 Consensus size: 42
18030 CTGGTCAAGG
* * ** *
18040 GTTGACACTGCTCATACGTGATGAAGAGTTCTTGGCCATCTTAAG
1 GTTGACACGGCTCCTACGTGATGAAGAG-TC-TGGTTATC-TAAA
* * * * *
18085 GTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTACA
1 GT--TGACACGGCTCCTACGTGATGAAGA-GTCTGGTTATCTAAA
* ***
18130 GTTGACACAGCTCCTACGTGATGAAGAGATCTGG---TCTGGG
1 GTTGACACGGCTCCTACGTGATGAAGAG-TCTGGTTATCTAAA
* * **
18170 GAATGACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAA
1 G-TTGACACGGCTCCTACGTGATGAAGAG-TCTGGTTATCTAAA
* * * * **
18214 GGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTATG
1 -GT--TGACACGGCTCCTACGTGATGAAGA-GTCTGGTTATCTAAA
*
18260 GTTGACACGGCTCATACGTGATGAAGAGATCTGGT
1 GTTGACACGGCTCCTACGTGATGAAGAG-TCTGGT
18295 CTGGGGATGA
Statistics
Matches: 157, Mismatches: 40, Indels: 28
0.70 0.18 0.12
Matches are distributed among these distances:
40 4 0.03
41 29 0.18
42 2 0.01
43 51 0.32
44 3 0.02
45 9 0.06
46 36 0.23
47 22 0.14
48 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (42 bp):
GTTGACACGGCTCCTACGTGATGAAGAGTCTGGTTATCTAAA
Found at i:18206 original size:130 final size:129
Alignment explanation
Indices: 18011--18340 Score: 482
Period size: 130 Copynumber: 2.5 Consensus size: 129
18001 GTGACATGGT
* * ** * *
18011 TCCTACGTGATGAGGAAATCTGGTCAAGGGTTGACACTGCTCATACGTGATGAAGAGTTCTTGGC
1 TCCTACGTGATGAAGAGATCTGGTCTGGGGATGACACGGCTCATACGTGATGAAGAGTTC-TGGC
18076 CATCTTAAGGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTACAGTTGACACAGC
65 CATCTTAAGGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTACAGTTGACACAGC
18141 TCCTACGTGATGAAGAGATCTGGTCTGGGGAATGACACGGCTCATACGTGATGAAGAGTTCTGGC
1 TCCTACGTGATGAAGAGATCTGGTCTGGGG-ATGACACGGCTCATACGTGATGAAGAGTTCTGGC
* ** *
18206 CATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTATGGTTGACACGGC
65 CATCTTAAGGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTACAGTTGACACAGC
* * * * * *
18271 TCATACGTGATGAAGAGATCTGGTCTGGGGATGACACGGTTCCTACATGATGAGGACG-GCTGGC
1 TCCTACGTGATGAAGAGATCTGGTCTGGGGATGACACGGCTCATACGTGATGAAGA-GTTCTGGC
18335 CATCTT
65 CATCTT
18341 TAGGAGTTAT
Statistics
Matches: 181, Mismatches: 17, Indels: 5
0.89 0.08 0.02
Matches are distributed among these distances:
129 32 0.18
130 121 0.67
131 28 0.15
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.26
Consensus pattern (129 bp):
TCCTACGTGATGAAGAGATCTGGTCTGGGGATGACACGGCTCATACGTGATGAAGAGTTCTGGCC
ATCTTAAGGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTACAGTTGACACAGC
Found at i:18293 original size:89 final size:83
Alignment explanation
Indices: 18173--18333 Score: 232
Period size: 83 Copynumber: 1.9 Consensus size: 83
18163 GTCTGGGGAA
* * *
18173 TGACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGA
1 TGACACGGCTCATACGTGATGAAGAGATCTGG---TCT---GGGGATAACACGGTTCCTACATGA
18238 TGAGGACGGCTGGTTATCTATGGT
60 TGAGGACGGCTGGTTATCTATGGT
*
18262 TGACACGGCTCATACGTGATGAAGAGATCTGGTCTGGGGATGACACGGTTCCTACATGATGAGGA
1 TGACACGGCTCATACGTGATGAAGAGATCTGGTCTGGGGATAACACGGTTCCTACATGATGAGGA
18327 CGGCTGG
66 CGGCTGG
18334 CCATCTTTAG
Statistics
Matches: 68, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
83 34 0.50
86 3 0.04
89 31 0.46
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (83 bp):
TGACACGGCTCATACGTGATGAAGAGATCTGGTCTGGGGATAACACGGTTCCTACATGATGAGGA
CGGCTGGTTATCTATGGT
Found at i:18392 original size:28 final size:28
Alignment explanation
Indices: 18372--18433 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
18362 AAACCAAATT
18372 AAAGATTTGTTTCAAAAGAAACAAACCC
1 AAAGATTTGTTTCAAAAGAAACAAACCC
* *
18400 AAAGATTTGTTTCAAGAA-AAATAAACTC
1 AAAGATTTGTTTCAA-AAGAAACAAACCC
18428 AAAGAT
1 AAAGAT
18434 GATATTTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
28 29 0.94
29 2 0.06
ACGTcount: A:0.52, C:0.13, G:0.11, T:0.24
Consensus pattern (28 bp):
AAAGATTTGTTTCAAAAGAAACAAACCC
Found at i:18794 original size:15 final size:15
Alignment explanation
Indices: 18770--18828 Score: 100
Period size: 15 Copynumber: 3.9 Consensus size: 15
18760 AAGATGATCT
*
18770 TGTTTTAAGAGAAAA
1 TGTTTCAAGAGAAAA
18785 TGTTTCAAGAGAAAA
1 TGTTTCAAGAGAAAA
18800 TGTTTCAAGAGAAAA
1 TGTTTCAAGAGAAAA
*
18815 TGTTTCAAGTGAAA
1 TGTTTCAAGAGAAA
18829 CGACTCAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 42 1.00
ACGTcount: A:0.44, C:0.05, G:0.20, T:0.31
Consensus pattern (15 bp):
TGTTTCAAGAGAAAA
Found at i:19056 original size:63 final size:64
Alignment explanation
Indices: 18985--19109 Score: 189
Period size: 64 Copynumber: 2.0 Consensus size: 64
18975 AAGGTTGGTA
* * *
18985 TTTTCAAAAGAAGTTGTC-TCGAGAGACAAAATTTTGTTTCAAAGGAAACAAACTCAAAGATTT
1 TTTTCAAAAGAAATTGTCTTCAAGAGACAAAATTTTGTTTCAAAAGAAACAAACTCAAAGATTT
* * *
19048 TTTTCAAAAGAAATTGTCTTTAAGAGATAAAATTTTGTTTCAAAAGAAACATACTCAAAGAT
1 TTTTCAAAAGAAATTGTCTTCAAGAGACAAAATTTTGTTTCAAAAGAAACAAACTCAAAGAT
19110 GAATCACATC
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
63 17 0.31
64 38 0.69
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.32
Consensus pattern (64 bp):
TTTTCAAAAGAAATTGTCTTCAAGAGACAAAATTTTGTTTCAAAAGAAACAAACTCAAAGATTT
Found at i:19224 original size:120 final size:119
Alignment explanation
Indices: 19007--19231 Score: 269
Period size: 120 Copynumber: 1.9 Consensus size: 119
18997 GTTGTCTCGA
* *
19007 GAGACAAAATTTTGTTTCAAAGGAAACAAACTCAAAGATTTTTTTCAAAAGAAATTGTCTTTAAG
1 GAGACAAAATTTTGTTTCAAAGGAAACAAACTCAAAGATTTTTTTCAAAAGAAACTGTCTTCAAG
* *
19072 AGATAAAATTTTGTTTCAAAAGAAACATACTCAAAGATGAATCACATCTTAAGT
66 AGAGAAAATTTTGTTTCAAAAGAAACAGACTCAAAGATGAATCACATCTTAAGT
* * * **
19126 GAGACCAAA-TTTGTTTCAAATGAAACAATCTCAAA-AGTTAGTTTTTCATTAGAAACTGTC-TC
1 GAGACAAAATTTTGTTTCAAAGGAAACAAACTCAAAGA-TT--TTTTTCAAAAGAAACTGTCTTC
** *
19188 AAGAGAGACAACA-TTTGTTTTTAAAGAAATAGACTCAAAGATGA
63 AAGAGAGA-AA-ATTTTGTTTCAAAAGAAACAGACTCAAAGATGA
19232 TTTTGTTAAG
Statistics
Matches: 89, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
117 1 0.01
118 26 0.29
119 16 0.18
120 45 0.51
121 1 0.01
ACGTcount: A:0.43, C:0.12, G:0.14, T:0.31
Consensus pattern (119 bp):
GAGACAAAATTTTGTTTCAAAGGAAACAAACTCAAAGATTTTTTTCAAAAGAAACTGTCTTCAAG
AGAGAAAATTTTGTTTCAAAAGAAACAGACTCAAAGATGAATCACATCTTAAGT
Found at i:19398 original size:37 final size:37
Alignment explanation
Indices: 19342--19468 Score: 126
Period size: 37 Copynumber: 3.6 Consensus size: 37
19332 GAAACATATT
*
19342 CAAAGATTTT-TTTCAAAAGAAATTATCTTAAGAGAGA
1 CAAA-ATTTTGTTTCAAAAGAAACTATCTTAAGAGAGA
* * * *
19379 CAAAATTTTGTTTCCAAAGAAACAAAC-TCA-A-AG-
1 CAAAATTTTGTTTCAAAAGAAACTATCTTAAGAGAGA
*
19412 ---ATTTTTGTTTCAAAAGAAACTATCTTAAGAGAGA
1 CAAAATTTTGTTTCAAAAGAAACTATCTTAAGAGAGA
*
19446 CAAAATTTTGTTTCCAAAGAAAC
1 CAAAATTTTGTTTCAAAAGAAAC
19469 AAACTCAAAG
Statistics
Matches: 70, Mismatches: 12, Indels: 16
0.71 0.12 0.16
Matches are distributed among these distances:
30 20 0.29
31 2 0.03
32 1 0.01
33 2 0.03
34 2 0.03
35 1 0.01
36 7 0.10
37 35 0.50
ACGTcount: A:0.45, C:0.13, G:0.12, T:0.31
Consensus pattern (37 bp):
CAAAATTTTGTTTCAAAAGAAACTATCTTAAGAGAGA
Found at i:19438 original size:67 final size:65
Alignment explanation
Indices: 19279--19500 Score: 281
Period size: 67 Copynumber: 3.4 Consensus size: 65
19269 GAACATATTT
** * * * * * * *
19279 AAAGATTTACTTCAAGAGAAACTGTCTCAAGAGATACAAAATTCAT-TTT--AAGAGAAACATAT
1 AAAGATTTTTTTCAAAAGAAACTATCTTAAGAGAGACAAAATT-TTGTTTCCAA-AGAAACAAAC
19341 TC
64 TC
*
19343 AAAGATTTTTTTCAAAAGAAATTATCTTAAGAGAGACAAAATTTTGTTTCCAAAGAAACAAACTC
1 AAAGATTTTTTTCAAAAGAAACTATCTTAAGAGAGACAAAATTTTGTTTCCAAAGAAACAAACTC
19408 AAAGATTTTTGTTTCAAAAGAAACTATCTTAAGAGAGACAAAATTTTGTTTCCAAAGAAACAAAC
1 AAAGA-TTTT-TTTCAAAAGAAACTATCTTAAGAGAGACAAAATTTTGTTTCCAAAGAAACAAAC
19473 TC
64 TC
*
19475 AAAGA-TTTTTTCAAAAGAAACAATCT
1 AAAGATTTTTTTCAAAAGAAACTATCT
19501 CAAAGATTTT
Statistics
Matches: 141, Mismatches: 12, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
63 1 0.01
64 56 0.40
65 18 0.13
66 6 0.04
67 60 0.43
ACGTcount: A:0.46, C:0.13, G:0.11, T:0.30
Consensus pattern (65 bp):
AAAGATTTTTTTCAAAAGAAACTATCTTAAGAGAGACAAAATTTTGTTTCCAAAGAAACAAACTC
Found at i:19521 original size:27 final size:27
Alignment explanation
Indices: 19456--19512 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
19446 CAAAATTTTG
*
19456 TTTCCAAAGAAACAAACTCAAAGATTT
1 TTTCAAAAGAAACAAACTCAAAGATTT
*
19483 TTTCAAAAGAAACAATCTCAAAGATTT
1 TTTCAAAAGAAACAAACTCAAAGATTT
19510 TTT
1 TTT
19513 TTCACGAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.46, C:0.16, G:0.07, T:0.32
Consensus pattern (27 bp):
TTTCAAAAGAAACAAACTCAAAGATTT
Found at i:19552 original size:91 final size:92
Alignment explanation
Indices: 19389--19597 Score: 271
Period size: 91 Copynumber: 2.3 Consensus size: 92
19379 CAAAATTTTG
* * *
19389 TTTCCAAAGAAACAAACTCAAAGATTTTTGTTTCAAAAGAAACTATCTTAAGAGAGACAAAATTT
1 TTTCAAAAGAAAC-AACTCAAAGATTTTTGTTTC-AAAGAAACTATCTCAAGAGAGACAAAACTT
19454 TGTTTCC-AAAGAAACAAACTCAAAGATTT
64 TGTTTCCAAAAGAAACAAACTCAAAGA-TT
* * *
19483 TTTCAAAAGAAACAATCTCAAAGATTTTT-TTTC-ACGAAATTGTCTCAAGAGAGACAAAACTTT
1 TTTCAAAAGAAACAA-CTCAAAGATTTTTGTTTCAAAGAAACTATCTCAAGAGAGACAAAACTTT
* * * *
19546 GTTTCCAAAATAAATAGACTCAAATATT
65 GTTTCCAAAAGAAACAAACTCAAAGATT
19574 TTTCAAAAGAAACAACTCAAAGAT
1 TTTCAAAAGAAACAACTCAAAGAT
19598 ATTTATTTAA
Statistics
Matches: 103, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
90 9 0.09
91 48 0.47
92 15 0.15
93 6 0.06
94 25 0.24
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.29
Consensus pattern (92 bp):
TTTCAAAAGAAACAACTCAAAGATTTTTGTTTCAAAGAAACTATCTCAAGAGAGACAAAACTTTG
TTTCCAAAAGAAACAAACTCAAAGATT
Found at i:19626 original size:29 final size:29
Alignment explanation
Indices: 19569--19813 Score: 162
Period size: 29 Copynumber: 8.4 Consensus size: 29
19559 ATAGACTCAA
*
19569 ATATTT-TTCAAAAGAAAC-AACTCAAAG
1 ATATTTATTCAAAAGGAACAAACTCAAAG
* *
19596 ATATTTATTTAAAAGGAACAAACTCCAAG
1 ATATTTATTCAAAAGGAACAAACTCAAAG
* * *
19625 ATTTTTATTCCAATGGAACAAACTCAAAG
1 ATATTTATTCAAAAGGAACAAACTCAAAG
* * ***
19654 AT-TTT-TTCAAGAGAAACTGTCTCAAGAGAG
1 ATATTTATTCAAAAGGAACAAACTC-A-A-AG
* * ** * *
19684 ACAAAACTTTGTTTCAAAATAAATAGACTCAAAG
1 ---ATA-TTT-ATTCAAAAGGAACAAACTCAAAG
* *
19718 AT-TTTTTTCAAAAGAAAC-AACTCAAAG
1 ATATTTATTCAAAAGGAACAAACTCAAAG
*
19745 ATATTTATTCAAAAGGAACAAACTCCAAG
1 ATATTTATTCAAAAGGAACAAACTCAAAG
* *
19774 ATTTTTATTCAAAATGAACAAACTCAAAG
1 ATATTTATTCAAAAGGAACAAACTCAAAG
*
19803 AT-TTTTTTCAA
1 ATATTTATTCAA
19814 GAGAAACTGT
Statistics
Matches: 172, Mismatches: 32, Indels: 27
0.74 0.14 0.12
Matches are distributed among these distances:
27 27 0.16
28 47 0.27
29 74 0.43
30 2 0.01
31 1 0.01
33 1 0.01
34 2 0.01
35 4 0.02
36 1 0.01
37 13 0.08
ACGTcount: A:0.46, C:0.15, G:0.10, T:0.30
Consensus pattern (29 bp):
ATATTTATTCAAAAGGAACAAACTCAAAG
Found at i:19768 original size:149 final size:149
Alignment explanation
Indices: 19461--19839 Score: 574
Period size: 149 Copynumber: 2.6 Consensus size: 149
19451 TTTTGTTTCC
* * * * * *
19461 AAAGAAACAAACTCAAAGA-TTTT-TTCAAAAGAAACAATCTCAAAGATTTTTTTTC-A-CGAAA
1 AAAGGAACAAACTCCAAGATTTTTATTCAAATGGAACAAACTCAAAGA-TTTTTTTCAAGAGAAA
*
19522 TTGTCTCAAGAGAGACAAAACTTTGTTTCCAAAATAAATAGACTCAAATATTTTTCAAAAGAAAC
65 CTGTCTCAAGAGAGACAAAACTTTGTTTCCAAAATAAATAGACTCAAATATTTTTCAAAAGAAAC
*
19587 AACTCAAAGATATTTATTTA
130 AACTCAAAGATATTTATTCA
*
19607 AAAGGAACAAACTCCAAGATTTTTATTCCAATGGAACAAACTCAAAGA-TTTTTTCAAGAGAAAC
1 AAAGGAACAAACTCCAAGATTTTTATTCAAATGGAACAAACTCAAAGATTTTTTTCAAGAGAAAC
*
19671 TGTCTCAAGAGAGACAAAACTTTGTTT-CAAAATAAATAGACTCAAAGATTTTTTTCAAAAGAAA
66 TGTCTCAAGAGAGACAAAACTTTGTTTCCAAAATAAATAGACTC-AA-ATATTTTTCAAAAGAAA
19735 CAACTCAAAGATATTTATTCA
129 CAACTCAAAGATATTTATTCA
19756 AAAGGAACAAACTCCAAGATTTTTATTCAAAAT-GAACAAACTCAAAGATTTTTTTCAAGAGAAA
1 AAAGGAACAAACTCCAAGATTTTTATTC-AAATGGAACAAACTCAAAGATTTTTTTCAAGAGAAA
*
19820 CTGTCTCAAGAGTGACAAAA
65 CTGTCTCAAGAGAGACAAAA
19840 AAAATCGTTT
Statistics
Matches: 213, Mismatches: 12, Indels: 12
0.90 0.05 0.05
Matches are distributed among these distances:
146 24 0.11
147 21 0.10
148 52 0.24
149 79 0.37
150 37 0.17
ACGTcount: A:0.46, C:0.15, G:0.11, T:0.28
Consensus pattern (149 bp):
AAAGGAACAAACTCCAAGATTTTTATTCAAATGGAACAAACTCAAAGATTTTTTTCAAGAGAAAC
TGTCTCAAGAGAGACAAAACTTTGTTTCCAAAATAAATAGACTCAAATATTTTTCAAAAGAAACA
ACTCAAAGATATTTATTCA
Found at i:19828 original size:28 final size:28
Alignment explanation
Indices: 19695--19820 Score: 148
Period size: 28 Copynumber: 4.5 Consensus size: 28
19685 CAAAACTTTG
* * *
19695 TTTCAAAATAAATAGACTCAAAGATTTT
1 TTTCAAAAGAAACAAACTCAAAGATTTT
19723 TTTCAAAAGAAAC-AACTCAAAGATATTT
1 TTTCAAAAGAAACAAACTCAAAGAT-TTT
* * *
19751 ATTCAAAAGGAACAAACTCCAAGATTTT
1 TTTCAAAAGAAACAAACTCAAAGATTTT
19779 TATTCAAAATG-AACAAACTCAAAGATTTT
1 T-TTCAAAA-GAAACAAACTCAAAGATTTT
*
19808 TTTCAAGAGAAAC
1 TTTCAAAAGAAAC
19821 TGTCTCAAGA
Statistics
Matches: 84, Mismatches: 9, Indels: 10
0.82 0.09 0.10
Matches are distributed among these distances:
27 11 0.13
28 37 0.44
29 35 0.42
30 1 0.01
ACGTcount: A:0.48, C:0.14, G:0.09, T:0.29
Consensus pattern (28 bp):
TTTCAAAAGAAACAAACTCAAAGATTTT
Found at i:20146 original size:36 final size:36
Alignment explanation
Indices: 20062--20165 Score: 133
Period size: 36 Copynumber: 3.0 Consensus size: 36
20052 GAGAAAATGA
* *
20062 TGTCTCAAGCGAGACAAAATTTG-CTTTA-AGATAT
1 TGTCTCAAGCGAGACAAAATTTGTTTTTAGAGAAAT
* **
20096 AGTCTCAAATGAGACAAAATTTGTTTTTAGAGAAAT
1 TGTCTCAAGCGAGACAAAATTTGTTTTTAGAGAAAT
*
20132 TGTCTCAAGCGAGACAAAGTTTGTTTTT-GAGAAA
1 TGTCTCAAGCGAGACAAAATTTGTTTTTAGAGAAA
20166 ACGATCTCAA
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
34 20 0.34
35 10 0.17
36 29 0.49
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.33
Consensus pattern (36 bp):
TGTCTCAAGCGAGACAAAATTTGTTTTTAGAGAAAT
Found at i:20193 original size:36 final size:36
Alignment explanation
Indices: 20063--20181 Score: 120
Period size: 36 Copynumber: 3.4 Consensus size: 36
20053 AGAAAATGAT
* * *
20063 GTCTCAAGCGAGACAAAATTTG-CTTTA-AGATATA-
1 GTCTCAAGTGAGACAAAATTTGTTTTTAGAGA-AAAC
* **
20097 GTCTCAAATGAGACAAAATTTGTTTTTAGAGAAATT
1 GTCTCAAGTGAGACAAAATTTGTTTTTAGAGAAAAC
* *
20133 GTCTCAAGCGAGACAAAGTTTGTTTTT-GAGAAAAC
1 GTCTCAAGTGAGACAAAATTTGTTTTTAGAGAAAAC
20168 GATCTCAAGTGAGA
1 G-TCTCAAGTGAGA
20182 TCAACTTTGT
Statistics
Matches: 70, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
34 20 0.29
35 12 0.17
36 38 0.54
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (36 bp):
GTCTCAAGTGAGACAAAATTTGTTTTTAGAGAAAAC
Found at i:20320 original size:105 final size:101
Alignment explanation
Indices: 20133--20365 Score: 267
Period size: 105 Copynumber: 2.3 Consensus size: 101
20123 TAGAGAAATT
*
20133 GTCTCAAGCGAGAC-AAAGTTTGTTTTTGAGAAAACGATCTCAAGTGAGATCAACTTTGTTTAAT
1 GTCTCAAGCGAGACGAAA-TTTG-TTTTGAGAAAACAATCTCAAGTGAGATCAACTTTGTTTAAT
* *
20197 GTGAAACAAATTCGAAATTTAG-ATCTCAAAGGGAAAAG
64 GTGAAACAAATTCAAAATTT-GTATCTCAAAGGAAAAAG
* *
20235 GTCTCAAGCGAGACGAAATTTGTTTTGAAAGAAACAACAATCT-AAGGTGAGATTAATTTTGTTT
1 GTCTCAAGCGAGACGAAATTTGTTTTG--AG-AA-AACAATCTCAA-GTGAGATCAACTTTGTTT
* * * *
20299 -TTAGTGAATCAGATTCAAAATTTGTATCTCAAAGGAAAAAT
61 AAT-GTGAAACAAATTCAAAATTTGTATCTCAAAGGAAAAAG
*
20340 GTCTCAAGCGAGACGCAATTTGTTTT
1 GTCTCAAGCGAGACGAAATTTGTTTT
20366 AAAATTCTCA
Statistics
Matches: 113, Mismatches: 10, Indels: 13
0.83 0.07 0.10
Matches are distributed among these distances:
101 5 0.04
102 18 0.16
103 5 0.04
104 6 0.05
105 79 0.70
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (101 bp):
GTCTCAAGCGAGACGAAATTTGTTTTGAGAAAACAATCTCAAGTGAGATCAACTTTGTTTAATGT
GAAACAAATTCAAAATTTGTATCTCAAAGGAAAAAG
Found at i:20842 original size:4 final size:4
Alignment explanation
Indices: 20833--20878 Score: 60
Period size: 4 Copynumber: 12.0 Consensus size: 4
20823 TTTATGTATC
* *
20833 ATGT ATGT ATG- -TGT ATGT ATGT ATGT ATGT AAGT TTGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
20879 GTATACTTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
2 2 0.06
4 34 0.94
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:22084 original size:12 final size:11
Alignment explanation
Indices: 22056--22093 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
22046 CCTCTTTTTG
*
22056 TTCTTTGCTTT
1 TTCTTTGATTT
22067 TTCTTTGATTT
1 TTCTTTGATTT
22078 TTGCTTTGATTT
1 TT-CTTTGATTT
22090 TTCT
1 TTCT
22094 CTTTGCTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 14 0.56
12 11 0.44
ACGTcount: A:0.05, C:0.13, G:0.11, T:0.71
Consensus pattern (11 bp):
TTCTTTGATTT
Found at i:22097 original size:13 final size:12
Alignment explanation
Indices: 22051--22098 Score: 53
Period size: 12 Copynumber: 3.9 Consensus size: 12
22041 TTTGTCCTCT
22051 TTTTGTTCTTTG-
1 TTTT-TTCTTTGA
*
22063 CTTTTTCTTTGA
1 TTTTTTCTTTGA
*
22075 TTTTTGCTTTGA
1 TTTTTTCTTTGA
22087 TTTTTCTCTTTG
1 TTTTT-TCTTTG
22099 CTCTTTGTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
11 7 0.23
12 18 0.60
13 5 0.17
ACGTcount: A:0.04, C:0.12, G:0.12, T:0.71
Consensus pattern (12 bp):
TTTTTTCTTTGA
Found at i:22098 original size:18 final size:17
Alignment explanation
Indices: 22077--22123 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 17
22067 TTCTTTGATT
22077 TTTGCTTTGATTTTTCTC
1 TTTGCTTTGATTTTT-TC
22095 TTTGCTCTTTG-TTTTTTC
1 TTTG--CTTTGATTTTTTC
*
22113 TTTGGTTTGAT
1 TTTGCTTTGAT
22124 CTTTGCACTC
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
16 4 0.16
17 1 0.04
18 10 0.40
19 5 0.20
20 5 0.20
ACGTcount: A:0.04, C:0.13, G:0.15, T:0.68
Consensus pattern (17 bp):
TTTGCTTTGATTTTTTC
Found at i:22782 original size:20 final size:20
Alignment explanation
Indices: 22701--22775 Score: 62
Period size: 20 Copynumber: 3.5 Consensus size: 20
22691 AAATACAGTG
*
22701 TTTCAAGGT-GGAAAGAATA
1 TTTCAAGGTCGAAAAGAATA
* *
22720 TTTCAAGGTCACAAAGAGAGGGAATG
1 TTTCAAGGT--CGAA-A-A--GAATA
22746 TTTCAAGGTCGAAAAGAATA
1 TTTCAAGGTCGAAAAGAATA
22766 TTTCAAGGTC
1 TTTCAAGGTC
22776 TCAAAGAGAT
Statistics
Matches: 44, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
19 9 0.20
20 14 0.32
22 2 0.05
23 2 0.05
24 4 0.09
26 13 0.30
ACGTcount: A:0.39, C:0.11, G:0.25, T:0.25
Consensus pattern (20 bp):
TTTCAAGGTCGAAAAGAATA
Found at i:22789 original size:26 final size:26
Alignment explanation
Indices: 22711--22790 Score: 73
Period size: 26 Copynumber: 3.3 Consensus size: 26
22701 TTTCAAGGTG
*
22711 GAAAGAATATTTCAAGGTCACAAAGA
1 GAAAGAATATTTCAAGGTCTCAAAGA
** *
22737 GAGGGAATGTTTCAAGG--TC---GA
1 GAAAGAATATTTCAAGGTCTCAAAGA
22758 -AAAGAATATTTCAAGGTCTCAAAGA
1 GAAAGAATATTTCAAGGTCTCAAAGA
*
22783 GATAGAAT
1 GAAAGAAT
22791 GTCAAAAATT
Statistics
Matches: 40, Mismatches: 8, Indels: 12
0.67 0.13 0.20
Matches are distributed among these distances:
20 13 0.32
21 2 0.05
22 2 0.05
24 1 0.03
25 2 0.05
26 20 0.50
ACGTcount: A:0.44, C:0.10, G:0.24, T:0.23
Consensus pattern (26 bp):
GAAAGAATATTTCAAGGTCTCAAAGA
Found at i:22791 original size:46 final size:45
Alignment explanation
Indices: 22699--22792 Score: 143
Period size: 46 Copynumber: 2.1 Consensus size: 45
22689 ATAAATACAG
* *
22699 TGTTTCAAGGTGGAAAGAATATTTCAAGGTCACAAAGAGAGGGAA
1 TGTTTCAAGGTGAAAAGAATATTTCAAGGTCACAAAGAGAGAGAA
* *
22744 TGTTTCAAGGTCGAAAAGAATATTTCAAGGTCTCAAAGAGATAGAA
1 TGTTTCAAGGT-GAAAAGAATATTTCAAGGTCACAAAGAGAGAGAA
22790 TGT
1 TGT
22793 CAAAAATTGG
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
45 11 0.25
46 33 0.75
ACGTcount: A:0.39, C:0.10, G:0.26, T:0.26
Consensus pattern (45 bp):
TGTTTCAAGGTGAAAAGAATATTTCAAGGTCACAAAGAGAGAGAA
Found at i:29137 original size:3 final size:3
Alignment explanation
Indices: 29118--29168 Score: 77
Period size: 3 Copynumber: 17.0 Consensus size: 3
29108 ATGTAAAATG
*
29118 TAA TAT TAA TAA T-A TAA TAA TAAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA
29163 TAA TAA
1 TAA TAA
29169 ATATATATAA
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
2 2 0.05
3 39 0.89
4 3 0.07
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:29145 original size:15 final size:15
Alignment explanation
Indices: 29125--29178 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
29115 ATGTAATATT
29125 AATAATATAATAATA
1 AATAATATAATAATA
29140 AAT-A-ATAATAAT-
1 AATAATATAATAATA
29152 AATAATAATAATAATA
1 AATAAT-ATAATAATA
29168 AATATATATAA
1 AATA-ATATAA
29179 ATAAGACCCG
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
12 3 0.09
13 9 0.26
14 1 0.03
15 11 0.32
16 8 0.24
17 2 0.06
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AATAATATAATAATA
Found at i:37760 original size:21 final size:21
Alignment explanation
Indices: 37735--37776 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
37725 AATTTAAAAT
* *
37735 GTGTATCGATGCACTGCTACA
1 GTGTACCGATACACTGCTACA
37756 GTGTACCGATACACTGCTACA
1 GTGTACCGATACACTGCTACA
37777 ATAATTTCAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (21 bp):
GTGTACCGATACACTGCTACA
Found at i:38316 original size:23 final size:23
Alignment explanation
Indices: 38290--38340 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
38280 TCGTATAAAT
*
38290 TTGCACCGAAGTGTCACGCAGAA
1 TTGCACCGAAGTGCCACGCAGAA
* *
38313 TTGCACCGAAGTGCCGCGTAGAA
1 TTGCACCGAAGTGCCACGCAGAA
38336 TTGCA
1 TTGCA
38341 TCGTAGTTCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.20
Consensus pattern (23 bp):
TTGCACCGAAGTGCCACGCAGAA
Found at i:38506 original size:23 final size:23
Alignment explanation
Indices: 38465--38508 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
38455 AATACATATA
*
38465 TGTCCCGAAGGACTACGTAGAAT
1 TGTCCCGAAGGACCACGTAGAAT
*
38488 TGTCCCGAAGGACCGCGTAGA
1 TGTCCCGAAGGACCACGTAGA
38509 CCCTCTACTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.27, C:0.25, G:0.30, T:0.18
Consensus pattern (23 bp):
TGTCCCGAAGGACCACGTAGAAT
Found at i:43375 original size:15 final size:15
Alignment explanation
Indices: 43355--43385 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
43345 GTGAGCCTTG
43355 TGATCCATATGCAGT
1 TGATCCATATGCAGT
43370 TGATCCATATGCAGT
1 TGATCCATATGCAGT
43385 T
1 T
43386 TGACTTTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (15 bp):
TGATCCATATGCAGT
Found at i:50090 original size:35 final size:34
Alignment explanation
Indices: 50005--50091 Score: 88
Period size: 35 Copynumber: 2.5 Consensus size: 34
49995 AAAATAATTT
* *
50005 TAAATACAACAAACTTACAATAAGTATTAAATGG
1 TAAATACAACAAAATTACAATAAGTATTAAATGA
* *
50039 TAAATGATAACCAAATTACAATAATTGATATTAAATGA
1 TAAAT-ACAACAAAATTACAATAA--G-TATTAAATGA
50077 T-AATA-AACAAAATTA
1 TAAATACAACAAAATTA
50092 ACTGAAATAC
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
34 5 0.11
35 24 0.55
36 1 0.02
37 4 0.09
38 10 0.23
ACGTcount: A:0.55, C:0.09, G:0.07, T:0.29
Consensus pattern (34 bp):
TAAATACAACAAAATTACAATAAGTATTAAATGA
Found at i:50545 original size:25 final size:25
Alignment explanation
Indices: 50491--50542 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
50481 TTATATCTGC
50491 AAAA-AAATTAAATGAGTAAAATTT
1 AAAATAAATTAAATGAGTAAAATTT
*
50515 TAAATAAATTAAAT-A-TAAAATATT
1 AAAATAAATTAAATGAGTAAAAT-TT
50539 AAAA
1 AAAA
50543 ATATAATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
23 6 0.25
24 9 0.38
25 9 0.38
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (25 bp):
AAAATAAATTAAATGAGTAAAATTT
Found at i:50968 original size:30 final size:29
Alignment explanation
Indices: 50906--50968 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 29
50896 TACTGCTAAG
** *
50906 GGTGTTAGATCGAGAAATATAGTATGACC
1 GGTGTTAGATCGAGAAATATACCATCACC
50935 GGTGTTAGATCG-GTAAATATACCAGTCACC
1 GGTGTTAGATCGAG-AAATATACCA-TCACC
50965 GGTG
1 GGTG
50969 ATTTTTTCGA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
28 1 0.03
29 20 0.69
30 8 0.28
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (29 bp):
GGTGTTAGATCGAGAAATATACCATCACC
Found at i:54015 original size:44 final size:44
Alignment explanation
Indices: 53884--54115 Score: 349
Period size: 44 Copynumber: 5.2 Consensus size: 44
53874 GATTTCTTGT
* *
53884 CAATATACATACCATTTAATCCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCA-TTATTCCATAAGCTCGTAAGCTTATTTTAC
* *
53929 CAATATACTTACCATTAAATCTC-TAAGCTTGTAAGCTTATTTTAC
1 CAATATACTTACCATT-ATTC-CATAAGCTCGTAAGCTTATTTTAC
*
53974 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTTC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
* *
54018 CAATATACTTACCATTATTCTATAAACTCGTAAGCTTATTTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
*
54062 CAATATACTTACCATTATTCTATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
*
54106 CAACATACTT
1 CAATATACTT
54116 TCTATAATTT
Statistics
Matches: 174, Mismatches: 10, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
43 1 0.01
44 118 0.68
45 54 0.31
46 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.06, T:0.39
Consensus pattern (44 bp):
CAATATACTTACCATTATTCCATAAGCTCGTAAGCTTATTTTAC
Found at i:55087 original size:23 final size:23
Alignment explanation
Indices: 55061--55109 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
55051 ATAAAGAACC
*
55061 AAAATAAACT-TAAATATACCATT
1 AAAATAAACTCTAAACAT-CCATT
*
55084 AAAATAAAGTCTAAACATCCATT
1 AAAATAAACTCTAAACATCCATT
55107 AAA
1 AAA
55110 CCAACCACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.57, C:0.14, G:0.02, T:0.27
Consensus pattern (23 bp):
AAAATAAACTCTAAACATCCATT
Found at i:60563 original size:23 final size:23
Alignment explanation
Indices: 60537--60585 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
60527 ATAAAGAACC
* *
60537 AAAATAAACT-TAAATATACCATT
1 AAAATAAAATCTAAACAT-CCATT
60560 AAAATAAAATCTAAACATCCATT
1 AAAATAAAATCTAAACATCCATT
60583 AAA
1 AAA
60586 CCAACCACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.59, C:0.14, G:0.00, T:0.27
Consensus pattern (23 bp):
AAAATAAAATCTAAACATCCATT
Found at i:61511 original size:60 final size:61
Alignment explanation
Indices: 61435--61549 Score: 169
Period size: 60 Copynumber: 1.9 Consensus size: 61
61425 TTCCTCCTCA
* *
61435 TTTTAGCACACGAAGTGCCCTATGCGAGAATCCATACCATTAGTATGA-TTCTTTTACCAT
1 TTTTAGCACACGAAGTGCCCTATACGAAAATCCATACCATTAGTATGATTTCTTTTACCAT
* * **
61495 TTTTAGCACATGAAGTGCCCTATATGAAAATCCATATTATTAGTATGATTTCTTT
1 TTTTAGCACACGAAGTGCCCTATACGAAAATCCATACCATTAGTATGATTTCTTT
61550 ATCCTTGTAG
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
60 42 0.88
61 6 0.12
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (61 bp):
TTTTAGCACACGAAGTGCCCTATACGAAAATCCATACCATTAGTATGATTTCTTTTACCAT
Found at i:61601 original size:59 final size:59
Alignment explanation
Indices: 61578--61977 Score: 563
Period size: 59 Copynumber: 6.8 Consensus size: 59
61568 GTGCTTTTTC
* * ** * * *
61578 TGGAAATCCATACACTCAATATGATCCCCTTACCATTTTAGCACA-TATAATGC-CCTATC
1 TGGAAATTCATACACTCAGTATGATTTCCTTACCATTTTAGCACACT-CAGTGCTCC-ATA
* * * * *
61637 TGGAAATCCATATATTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATA
1 TGGAAATTCATACACTCAGTATGATTTCCTTACCATTTTAGCACACTCAGTGCTCCATA
* *
61696 TGGAAATTCATACACTCAGTATAATTTCATTACCATTTTAGCACACTCAGTGCTCCATA
1 TGGAAATTCATACACTCAGTATGATTTCCTTACCATTTTAGCACACTCAGTGCTCCATA
*
61755 TGGAAATTCATACACTCAATATGA-TTCTCTTACCATTTTAGCACACTCAGTGCTCCATA
1 TGGAAATTCATACACTCAGTATGATTTC-CTTACCATTTTAGCACACTCAGTGCTCCATA
*
61814 TGGAAATTCATACACTCAGTATGATTCCCTTACCATTTTAGCACACTCAGTGCTCCATA
1 TGGAAATTCATACACTCAGTATGATTTCCTTACCATTTTAGCACACTCAGTGCTCCATA
* * *
61873 TGGAAATTCATACACTCAGTATGATTCCCTTACCATTTTAGCACACTTAGTACTCCATA
1 TGGAAATTCATACACTCAGTATGATTTCCTTACCATTTTAGCACACTCAGTGCTCCATA
* *
61932 TGGAAATTCATACACTCAGTATGATTTCTTTATCATTTTAGCACAC
1 TGGAAATTCATACACTCAGTATGATTTCCTTACCATTTTAGCACAC
61978 ATAGAGCCAT
Statistics
Matches: 312, Mismatches: 25, Indels: 8
0.90 0.07 0.02
Matches are distributed among these distances:
58 3 0.01
59 304 0.97
60 5 0.02
ACGTcount: A:0.31, C:0.25, G:0.10, T:0.34
Consensus pattern (59 bp):
TGGAAATTCATACACTCAGTATGATTTCCTTACCATTTTAGCACACTCAGTGCTCCATA
Found at i:61670 original size:118 final size:117
Alignment explanation
Indices: 61395--61976 Score: 540
Period size: 118 Copynumber: 4.9 Consensus size: 117
61385 TCTCAGTACT
* ** * **
61395 CTATCTGGAATAT-CATATACTT-AATATGATTTCCTCCTCATTTTAGCACACGAAGTGC-CC-T
1 CTATATGGAA-ATCCATATA-TTCAATATGATTTCCTTATCCTTTTAGCACACTCAGTGCTCCAT
* * **
61456 ATGCGAGAATCCATAC-CATTAGTATGATTCTTTTACCATTTTTAGCACATGAAGTGCC
64 ATG-GA-AATTCATACAC-TCAGTATGATTCCCTTACCA-TTTTAGCACAT-AAGTGCC
* * * * * ***
61514 CTATATGAAAATCCATATTATT-AGTATGATTTCTTTATCCTTGTAGCAGC-CTTAGTGCTTTTT
1 CTATATGGAAATCCATA-TATTCAATATGATTTCCTTATCCTTTTAGCA-CACTCAGTGCTCCAT
* * * * *
61577 CTGGAAATCCATACACTCAATATGATCCCCTTACCATTTTAGCACATATAATGCC
64 ATGGAAATTCATACACTCAGTATGATTCCCTTACCATTTTAGCACATA-AGTGCC
* *
61632 CTATCTGGAAATCCATATATTCAATATGATTTCCTTATCATTTTAGCACACTCAGTGCTCCATAT
1 CTATATGGAAATCCATATATTCAATATGATTTCCTTATCCTTTTAGCACACTCAGTGCTCCATAT
* * * *
61697 GGAAATTCATACACTCAGTATAATTTCATTACCATTTTAGCACACTCAGTGCTC
66 GGAAATTCATACACTCAGTATGATTCCCTTACCATTTTAGCACA-TAAGTGC-C
* * *
61751 C-ATATGGAAATTCATACACTCAATATGA-TTCTCTTA-CCATTTTAGCACACTCAGTGCTCCAT
1 CTATATGGAAATCCATATATTCAATATGATTTC-CTTATCC-TTTTAGCACACTCAGTGCTCCAT
*
61813 ATGGAAATTCATACACTCAGTATGATTCCCTTACCATTTTAGCACACTCAGTGCTC
64 ATGGAAATTCATACACTCAGTATGATTCCCTTACCATTTTAGCACA-TAAGTGC-C
* * * * * * *
61869 C-ATATGGAAATTCATACACTCAGTATGATTCCCTTA-CCATTTTAGCACACTTAGTACTCCATA
1 CTATATGGAAATCCATATATTCAATATGATTTCCTTATCC-TTTTAGCACACTCAGTGCTCCATA
* * *
61932 TGGAAATTCATACACTCAGTATGATTTCTTTATCATTTTAGCACA
65 TGGAAATTCATACACTCAGTATGATTCCCTTACCATTTTAGCACA
61977 CATAGAGCCA
Statistics
Matches: 396, Mismatches: 53, Indels: 29
0.83 0.11 0.06
Matches are distributed among these distances:
117 10 0.03
118 308 0.78
119 69 0.17
120 6 0.02
121 3 0.01
ACGTcount: A:0.30, C:0.23, G:0.11, T:0.36
Consensus pattern (117 bp):
CTATATGGAAATCCATATATTCAATATGATTTCCTTATCCTTTTAGCACACTCAGTGCTCCATAT
GGAAATTCATACACTCAGTATGATTCCCTTACCATTTTAGCACATAAGTGCC
Found at i:61831 original size:28 final size:28
Alignment explanation
Indices: 61797--61892 Score: 77
Period size: 28 Copynumber: 3.3 Consensus size: 28
61787 CCATTTTAGC
61797 ACACTCAGTGCTCCATATGGAAATTCAT
1 ACACTCAGTGCTCCATATGGAAATTCAT
* * *** * * *
61825 ACACTCAGTATGATTCCCT-TACCATTTTAGC
1 ACACTCAG--TG-CTCCATATGGAAATTCA-T
61856 ACACTCAGTGCTCCATATGGAAATTCAT
1 ACACTCAGTGCTCCATATGGAAATTCAT
61884 ACACTCAGT
1 ACACTCAGT
61893 ATGATTCCCT
Statistics
Matches: 47, Mismatches: 16, Indels: 10
0.64 0.22 0.14
Matches are distributed among these distances:
28 21 0.45
29 7 0.15
30 7 0.15
31 12 0.26
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.30
Consensus pattern (28 bp):
ACACTCAGTGCTCCATATGGAAATTCAT
Found at i:61863 original size:31 final size:31
Alignment explanation
Indices: 61825--61924 Score: 82
Period size: 31 Copynumber: 3.3 Consensus size: 31
61815 GGAAATTCAT
61825 ACACTCAGTATGATTCCCTTACCATTTTAGC
1 ACACTCAGTATGATTCCCTTACCATTTTAGC
* * *** * * *
61856 ACACTCAG--TG-CTCCATATGGAAATTCA-T
1 ACACTCAGTATGATTCCCT-TACCATTTTAGC
61884 ACACTCAGTATGATTCCCTTACCATTTTAGC
1 ACACTCAGTATGATTCCCTTACCATTTTAGC
*
61915 ACACTTAGTA
1 ACACTCAGTA
61925 CTCCATATGG
Statistics
Matches: 47, Mismatches: 17, Indels: 10
0.64 0.23 0.14
Matches are distributed among these distances:
28 12 0.26
29 7 0.15
30 7 0.15
31 21 0.45
ACGTcount: A:0.29, C:0.27, G:0.11, T:0.33
Consensus pattern (31 bp):
ACACTCAGTATGATTCCCTTACCATTTTAGC
Found at i:62998 original size:17 final size:17
Alignment explanation
Indices: 62976--63013 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
62966 AGAATTGTTT
62976 ATTCAATTCAATAGGAA
1 ATTCAATTCAATAGGAA
62993 ATTCAATTCAATAGGAA
1 ATTCAATTCAATAGGAA
63010 ATTC
1 ATTC
63014 CATTTTTGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.45, C:0.13, G:0.11, T:0.32
Consensus pattern (17 bp):
ATTCAATTCAATAGGAA
Found at i:67339 original size:21 final size:21
Alignment explanation
Indices: 67313--67356 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
67303 AATTAACATT
67313 GTGCATCGATGCACTGCTACA
1 GTGCATCGATGCACTGCTACA
*
67334 GTGCATCGATGCACTGTTACA
1 GTGCATCGATGCACTGCTACA
67355 GT
1 GT
67357 ACATGCTACA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.27
Consensus pattern (21 bp):
GTGCATCGATGCACTGCTACA
Found at i:67816 original size:45 final size:44
Alignment explanation
Indices: 67764--67954 Score: 267
Period size: 45 Copynumber: 4.3 Consensus size: 44
67754 GATTTCTTGT
*
67764 CAATATACATACCATTTAATCCATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCA-TTAATCCATAAGCTCGTAAGCTTATTTTAC
*
67809 CAATATACTTACCATTAAATCTC-TAAGCTTGTAAGCTTATTTTAC
1 CAATATACTTACCATT-AATC-CATAAGCTCGTAAGCTTATTTTAC
* *
67854 CAATATACTTACCATTATTCTATAAGCTTCGTAAGCTTATTTTAC
1 CAATATACTTACCATTAATCCATAAGC-TCGTAAGCTTATTTTAC
* * *
67899 CAATATACTTACTATTATTCTATAAGCTCGTAAGCTTATTTTAC
1 CAATATACTTACCATTAATCCATAAGCTCGTAAGCTTATTTTAC
*
67943 CAACATACTTAC
1 CAATATACTTAC
67955 TATAATTTAC
Statistics
Matches: 135, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
44 38 0.28
45 96 0.71
46 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.06, T:0.39
Consensus pattern (44 bp):
CAATATACTTACCATTAATCCATAAGCTCGTAAGCTTATTTTAC
Found at i:67886 original size:90 final size:89
Alignment explanation
Indices: 67764--67954 Score: 285
Period size: 89 Copynumber: 2.1 Consensus size: 89
67754 GATTTCTTGT
*
67764 CAATATACATACCATTTAATCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTAAAT
1 CAATATACTTACCATTTAATCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATT-AAT
* *
67829 CTCTAAGCTTGTAAGCTTATTTTAC
65 CTATAAGCTCGTAAGCTTATTTTAC
* * * *
67854 CAATATACTTACCA-TTATTCTATAAGCTTCGTAAGCTTATTTTACCAATATACTTACTATTATT
1 CAATATACTTACCATTTAATCCATAAGC-TCGTAAGCTTATTTTACCAATATACTTACCATTAAT
67918 CTATAAGCTCGTAAGCTTATTTTAC
65 CTATAAGCTCGTAAGCTTATTTTAC
*
67943 CAACATACTTAC
1 CAATATACTTAC
67955 TATAATTTAC
Statistics
Matches: 92, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
89 47 0.51
90 45 0.49
ACGTcount: A:0.34, C:0.21, G:0.06, T:0.39
Consensus pattern (89 bp):
CAATATACTTACCATTTAATCCATAAGCTCGTAAGCTTATTTTACCAATATACTTACCATTAATC
TATAAGCTCGTAAGCTTATTTTAC
Found at i:68300 original size:59 final size:59
Alignment explanation
Indices: 68258--68656 Score: 577
Period size: 59 Copynumber: 6.8 Consensus size: 59
68248 GTGCTATTTT
* * * *
68258 TGGAAATCCATACACTCAGTATGATTCCCTTACCATTTTAGCACA-TATAATGC-CCTATC
1 TGGAAATTCATACACTCAGTATGATTCCCTTACCATTTTAGCACACT-CAGTGCTCC-ATA
* * * * * * *
68317 TGGAAATCCATATATTCAATATGATTTCCTTATCATATTAGCACACTCAGTGCTCCATA
1 TGGAAATTCATACACTCAGTATGATTCCCTTACCATTTTAGCACACTCAGTGCTCCATA
* * *
68376 TGGAAATTCATACACTCAGTATAATTCCATTACCATTTTAGCACACTCAGTGTTCCATA
1 TGGAAATTCATACACTCAGTATGATTCCCTTACCATTTTAGCACACTCAGTGCTCCATA
68435 TGGAAATTCATACACTCAGTATGATTCCCTTACCATTTTAGCACACTCAGTGCTCCATA
1 TGGAAATTCATACACTCAGTATGATTCCCTTACCATTTTAGCACACTCAGTGCTCCATA
* * * *
68494 TGAAAATTTATACACTCAGTATAATTCTCTTACCATTTTAGCACACTCAGTGCTCCATA
1 TGGAAATTCATACACTCAGTATGATTCCCTTACCATTTTAGCACACTCAGTGCTCCATA
*
68553 TGGAAATTCATACACTCAGTATGATTCCCTTACCATTTTAGCACACTCAATGCTCCATA
1 TGGAAATTCATACACTCAGTATGATTCCCTTACCATTTTAGCACACTCAGTGCTCCATA
* *
68612 TGGAAATTCATACACTCAGTATGATTTCCTTATCATTTTAGCACA
1 TGGAAATTCATACACTCAGTATGATTCCCTTACCATTTTAGCACA
68657 TATAGTGCCA
Statistics
Matches: 305, Mismatches: 33, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
59 302 0.99
60 3 0.01
ACGTcount: A:0.31, C:0.25, G:0.10, T:0.34
Consensus pattern (59 bp):
TGGAAATTCATACACTCAGTATGATTCCCTTACCATTTTAGCACACTCAGTGCTCCATA
Found at i:68349 original size:118 final size:117
Alignment explanation
Indices: 68113--68665 Score: 559
Period size: 118 Copynumber: 4.7 Consensus size: 117
68103 ATTTCCTCCT
** * * **
68113 CATTTTAGCACACGAAGTGC-CC-TATGCGAGAATCCATAC-CATTAGTATGATTCTTTTACCAG
1 CATTTTAGCACACTCAGTGCTCCATATG-GA-AATTCATACAC-TCAGTATGATTCCCTTACCA-
* * *
68175 TTTTAGCACATGA-AGTGCCCTATATGAAAATCCATACTA-TTAGTATGATAT-ACTTATC
62 TTTTAGCACAT-ACAGTGCCC-ATATGGAAATCCATAC-ACTCAGTATGAT-TCCCTTA-C
* * *** * *
68233 C-TTGTAGCAGC-CTTAGTGCTATTTTTGGAAATCCATACACTCAGTATGATTCCCTTACCATTT
1 CATTTTAGCA-CACTCAGTGCTCCATATGGAAATTCATACACTCAGTATGATTCCCTTACCATTT
* * * * * * * *
68296 TAGCACATATAATGCCCTATCTGGAAATCCATATATTCAATATGATTTCCTTAT
65 TAGCACATACAGTGCCC-ATATGGAAATCCATACACTCAGTATGATTCCCTTAC
* * *
68350 CATATTAGCACACTCAGTGCTCCATATGGAAATTCATACACTCAGTATAATTCCATTACCATTTT
1 CATTTTAGCACACTCAGTGCTCCATATGGAAATTCATACACTCAGTATGATTCCCTTACCATTTT
* *
68415 AGCACACT-CAGTGTTCCATATGGAAATTCATACACTCAGTATGATTCCCTTAC
66 AGCACA-TACAGTG-CCCATATGGAAATCCATACACTCAGTATGATTCCCTTAC
* * * *
68468 CATTTTAGCACACTCAGTGCTCCATATGAAAATTTATACACTCAGTATAATTCTCTTACCATTTT
1 CATTTTAGCACACTCAGTGCTCCATATGGAAATTCATACACTCAGTATGATTCCCTTACCATTTT
*
68533 AGCACACT-CAGTGCTCCATATGGAAATTCATACACTCAGTATGATTCCCTTAC
66 AGCACA-TACAGTGC-CCATATGGAAATCCATACACTCAGTATGATTCCCTTAC
* * *
68586 CATTTTAGCACACTCAATGCTCCATATGGAAATTCATACACTCAGTATGATTTCCTTATCATTTT
1 CATTTTAGCACACTCAGTGCTCCATATGGAAATTCATACACTCAGTATGATTCCCTTACCATTTT
*
68651 AGCACATATAGTGCC
66 AGCACATACAGTGCC
68666 ATTTGGTAAT
Statistics
Matches: 369, Mismatches: 51, Indels: 29
0.82 0.11 0.06
Matches are distributed among these distances:
117 7 0.02
118 312 0.85
119 42 0.11
120 5 0.01
121 3 0.01
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.34
Consensus pattern (117 bp):
CATTTTAGCACACTCAGTGCTCCATATGGAAATTCATACACTCAGTATGATTCCCTTACCATTTT
AGCACATACAGTGCCCATATGGAAATCCATACACTCAGTATGATTCCCTTAC
Found at i:68422 original size:31 final size:30
Alignment explanation
Indices: 68387--68544 Score: 80
Period size: 31 Copynumber: 5.3 Consensus size: 30
68377 GGAAATTCAT
68387 ACACTCAGTATAATTCCATTACCATTTTAGC
1 ACACTCAGTAT-ATTCCATTACCATTTTAGC
* *** * * *
68418 ACACTCAG--TGTTCCATATGGAAATTCA-T
1 ACACTCAGTATATTCCAT-TACCATTTTAGC
*
68446 ACACTCAGTATGATTCCCTTACCATTTTAGC
1 ACACTCAGTAT-ATTCCATTACCATTTTAGC
** * * *
68477 ACACTCAG--TGCTCCATATGA-AAATTTA-T
1 ACACTCAGTATATTCCAT-T-ACCATTTTAGC
68505 ACACTCAGTATAATTCTC-TTACCATTTTAGC
1 ACACTCAGTAT-ATTC-CATTACCATTTTAGC
68536 ACACTCAGT
1 ACACTCAGT
68545 GCTCCATATG
Statistics
Matches: 88, Mismatches: 26, Indels: 26
0.63 0.19 0.19
Matches are distributed among these distances:
28 26 0.30
29 14 0.16
30 14 0.16
31 33 0.38
32 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.09, T:0.34
Consensus pattern (30 bp):
ACACTCAGTATATTCCATTACCATTTTAGC
Found at i:68449 original size:28 final size:28
Alignment explanation
Indices: 68359--68454 Score: 77
Period size: 28 Copynumber: 3.3 Consensus size: 28
68349 TCATATTAGC
*
68359 ACACTCAGTGCTCCATATGGAAATTCAT
1 ACACTCAGTGTTCCATATGGAAATTCAT
* *** * * *
68387 ACACTCAGTATAATTCCAT-TACCATTTTAGC
1 ACACTCAG--T-GTTCCATATGGAAATTCA-T
68418 ACACTCAGTGTTCCATATGGAAATTCAT
1 ACACTCAGTGTTCCATATGGAAATTCAT
68446 ACACTCAGT
1 ACACTCAGT
68455 ATGATTCCCT
Statistics
Matches: 48, Mismatches: 15, Indels: 10
0.66 0.21 0.14
Matches are distributed among these distances:
28 23 0.48
29 6 0.12
30 6 0.12
31 13 0.27
ACGTcount: A:0.32, C:0.25, G:0.11, T:0.31
Consensus pattern (28 bp):
ACACTCAGTGTTCCATATGGAAATTCAT
Found at i:71829 original size:19 final size:18
Alignment explanation
Indices: 71805--71881 Score: 64
Period size: 19 Copynumber: 4.1 Consensus size: 18
71795 TTTGAATCAG
*
71805 AACTTATTTACAGATTCAT
1 AACTTATTT-CAAATTCAT
* *
71824 AACTTATTTTCATACTCAT
1 AACTTA-TTTCAAATTCAT
* *
71843 AGCTTACTGTCAAATTCAT
1 AACTTA-TTTCAAATTCAT
*
71862 AACTTATTTTCTAATTCAT
1 AACTTA-TTTCAAATTCAT
71881 A
1 A
71882 GTCCAATGTA
Statistics
Matches: 46, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
19 43 0.93
20 3 0.07
ACGTcount: A:0.34, C:0.18, G:0.04, T:0.44
Consensus pattern (18 bp):
AACTTATTTCAAATTCAT
Found at i:79522 original size:56 final size:55
Alignment explanation
Indices: 79421--79527 Score: 169
Period size: 56 Copynumber: 1.9 Consensus size: 55
79411 AAGGTAATGT
**
79421 ACTAACACATGATTTGCTAATTACAATTTCACTTGAAAGTTTCTACACTTTTCTGA
1 ACTAACACATGATTTGCTAATTACAATTTCACTTGAAAGCATCTACA-TTTTCTGA
* *
79477 ACTAACGCATGATTTGTTAATTACAATTTCACTTGAAAGCATCTACATTTT
1 ACTAACACATGATTTGCTAATTACAATTTCACTTGAAAGCATCTACATTTT
79528 ATTGCTTGTC
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
55 4 0.09
56 43 0.91
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.39
Consensus pattern (55 bp):
ACTAACACATGATTTGCTAATTACAATTTCACTTGAAAGCATCTACATTTTCTGA
Found at i:82611 original size:11 final size:11
Alignment explanation
Indices: 82595--82625 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
82585 ATATTTAAAG
82595 TTATATTTTAT
1 TTATATTTTAT
*
82606 TTATATCTTAT
1 TTATATTTTAT
82617 TTATATTTT
1 TTATATTTT
82626 GGTCTGTTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (11 bp):
TTATATTTTAT
Found at i:82760 original size:23 final size:22
Alignment explanation
Indices: 82710--82766 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 22
82700 TATTTACAAT
*
82710 AAATTAT--TATTATTTTTGTT
1 AAATTATAATATTATTTTTGTA
82730 AAATTATAATATTATTTTTG-A
1 AAATTATAATATTATTTTTGTA
82751 AAATGATATAATATTA
1 AAAT--TATAATATTA
82767 CATATATGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
20 7 0.22
21 4 0.12
22 11 0.34
23 10 0.31
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (22 bp):
AAATTATAATATTATTTTTGTA
Found at i:89596 original size:18 final size:18
Alignment explanation
Indices: 89575--89635 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 18
89565 TTAATAAAAT
*
89575 AATATATATTAAAAATAA
1 AATATATATTAAAATTAA
* *
89593 AATA-ATAATACTAATTAA
1 AATATATATTA-AAATTAA
89611 AATAT-TATATAAAATTAA
1 AATATATAT-TAAAATTAA
89629 AATATAT
1 AATATAT
89636 TAAACAATAA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
17 5 0.15
18 26 0.76
19 3 0.09
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
AATATATATTAAAATTAA
Found at i:90497 original size:23 final size:23
Alignment explanation
Indices: 90471--90516 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
90461 TAAGCTTTCC
*
90471 TTTCTTTCTTTT-TTTTTTCTGTT
1 TTTC-TTCTTTTCTGTTTTCTGTT
90494 TTTCTTCTTTTCTGTTTTCTGTT
1 TTTCTTCTTTTCTGTTTTCTGTT
90517 CTCCCCCCCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 7 0.33
23 14 0.67
ACGTcount: A:0.00, C:0.15, G:0.07, T:0.78
Consensus pattern (23 bp):
TTTCTTCTTTTCTGTTTTCTGTT
Found at i:90930 original size:12 final size:12
Alignment explanation
Indices: 90913--90969 Score: 50
Period size: 12 Copynumber: 4.9 Consensus size: 12
90903 TTATTTAATG
90913 ATAATAATATAT
1 ATAATAATATAT
90925 ATAATAATATAT
1 ATAATAATATAT
* *
90937 TTATTTAATA-AT
1 ATA-ATAATATAT
90949 AATAATAAT-TA-
1 -ATAATAATATAT
90960 A-AATAATATA
1 ATAATAATATA
90970 ATGAAAAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
9 6 0.16
10 3 0.08
12 21 0.57
13 7 0.19
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
ATAATAATATAT
Found at i:90941 original size:34 final size:34
Alignment explanation
Indices: 90902--90969 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 34
90892 TTATTATTTT
* *
90902 TTTATTTAATGATAATAAT-ATATATAATAATATA
1 TTTATTTAATAATAATAATAAT-TAAAATAATATA
90936 TTTATTTAATAATAATAATAATTAAAATAATATA
1 TTTATTTAATAATAATAATAATTAAAATAATATA
90970 ATGAAAAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
34 29 0.94
35 2 0.06
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (34 bp):
TTTATTTAATAATAATAATAATTAAAATAATATA
Found at i:91217 original size:76 final size:76
Alignment explanation
Indices: 91091--92867 Score: 3238
Period size: 76 Copynumber: 23.4 Consensus size: 76
91081 GAAATATTGA
91091 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
91156 AGGCTTTTTGG
66 AGGCTTTTTGG
91167 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
91232 AGGCTTTTTGG
66 AGGCTTTTTGG
91243 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
91308 AGGCTTTTTGG
66 AGGCTTTTTGG
91319 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
91384 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
91395 AAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
91460 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
91471 AAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAATATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
91536 AGGCTTTTTGG
66 AGGCTTTTTGG
*
91547 AAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTT-AAGAACATCAAAAAGCTCCCG
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAA-AACATCAAAAAGCTCCCG
91611 AAGGCTTTTTGG
65 AAGGCTTTTTGG
* *
91623 AAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGATTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
91688 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
91699 AAACACCATGCACTGAAGGACTTACAGATGACCCGAAGGATTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
91764 AGGCTTTTTGG
66 AGGCTTTTTGG
*
91775 AAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
91840 AGGCTTTTTGG
66 AGGCTTTTTGG
*
91851 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGATTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
91916 AGGCTTTTTGG
66 AGGCTTTTTGG
*
91927 AAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
91992 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
92003 AAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGATCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
92068 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
92079 AAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAATATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
92144 AGGCTTTTTGG
66 AGGCTTTTTGG
*
92155 AAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTT-AAGAACATC-AAAAGCTCCCG
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAA-AACATCAAAAAGCTCCCG
92218 AAGGCTTTTTGG
65 AAGGCTTTTTGG
* *
92230 AAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGATTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
92295 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
92306 AAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAATATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
92371 AGGCTTTTTGG
66 AGGCTTTTTGG
*
92382 AAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTT-AAGAACATCAAAAAGCTCCCG
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAA-AACATCAAAAAGCTCCCG
92446 AAGGCTTTTTGG
65 AAGGCTTTTTGG
* *
92458 AAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGATTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
92523 AGGCTTTTTGG
66 AGGCTTTTTGG
* *
92534 AAACACCATGCACTGAAGGACTTACAGATGACCCGAAGGATTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
92599 AGGCTTTTTGG
66 AGGCTTTTTGG
*
92610 AAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
92675 AGGCTTTTTGG
66 AGGCTTTTTGG
*
92686 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGATTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
92751 AGGCTTTTTGG
66 AGGCTTTTTGG
*
92762 AAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
92827 AGGCTTTTTGG
66 AGGCTTTTTGG
92838 AAACATCATGCACTGAAGGACTTACAGATG
1 AAACATCATGCACTGAAGGACTTACAGATG
92868 TGGGAAATAG
Statistics
Matches: 1650, Mismatches: 44, Indels: 14
0.97 0.03 0.01
Matches are distributed among these distances:
75 77 0.05
76 1569 0.95
77 4 0.00
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (76 bp):
AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
AGGCTTTTTGG
Found at i:94018 original size:54 final size:54
Alignment explanation
Indices: 93936--94091 Score: 258
Period size: 54 Copynumber: 2.9 Consensus size: 54
93926 AGAATAGCAG
** *
93936 GTTCGTAAAACATTTGACAGTACGTTCATCCTTTCCTGTGGCTTCTGCTCAGAT
1 GTTCGTAAAACATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCTCAGAT
* *
93990 GTTCGTAAAACATTTGACAACACATTCATCCTTTCCTGTGGTTTCTGTTCAGAT
1 GTTCGTAAAACATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCTCAGAT
*
94044 GTTCGTAAAACATTTGACAACACATTCATCCTTTACTGTGGCTTCTGC
1 GTTCGTAAAACATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGC
94092 CAAGATTTCT
Statistics
Matches: 94, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 94 1.00
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.37
Consensus pattern (54 bp):
GTTCGTAAAACATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCTCAGAT
Found at i:96308 original size:83 final size:83
Alignment explanation
Indices: 96169--96507 Score: 565
Period size: 83 Copynumber: 4.1 Consensus size: 83
96159 CTTATTTCTC
* * *
96169 CTATGAGCAAATTCATCTTCTAAATTCAATGATCGGTTCTGCCAAATCAGATCAGATAACTCAAA
1 CTATGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGCCAAACCAGATCAGATAACTCAAA
96234 GAACACTTCCAAAAGATG
66 GAACACTTCCAAAAGATG
* * *
96252 CTATGAGCACATTCATCTTCTAAATTCAATGATTGGTTCTGTCC-AACCAAATCAGATAACTCAA
1 CTATGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTG-CCAAACCAGATCAGATAACTCAA
96316 AGAACACTTCCAAAAGATG
65 AGAACACTTCCAAAAGATG
*
96335 CTATGAGCACATTCATCTTCCAAATTCAATGATTGGTTCTGTCC-AACCAGATCAGATAACTCAA
1 CTATGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTG-CCAAACCAGATCAGATAACTCAA
*
96399 AGAACACTTCCAGAAGATG
65 AGAACACTTCCAAAAGATG
*
96418 CTATGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGCCAAATCAGATCAGATAACTCAAA
1 CTATGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGCCAAACCAGATCAGATAACTCAAA
96483 GAACACTTCCAAAAGATG
66 GAACACTTCCAAAAGATG
96501 CTATGAG
1 CTATGAG
96508 TCTCTTTCAG
Statistics
Matches: 244, Mismatches: 10, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
82 2 0.01
83 240 0.98
84 2 0.01
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (83 bp):
CTATGAGCAAATTCATCTTCCAAATTCAATGATTGGTTCTGCCAAACCAGATCAGATAACTCAAA
GAACACTTCCAAAAGATG
Found at i:103402 original size:11 final size:11
Alignment explanation
Indices: 103374--103407 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
103364 AAATACTTGC
*
103374 AAATAAAATAAA
1 AAATAAAA-AAT
103386 AAATAAAAAAT
1 AAATAAAAAAT
103397 AAATAAAAAAT
1 AAATAAAAAAT
103408 TTGAAAGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 13 0.62
12 8 0.38
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (11 bp):
AAATAAAAAAT
Found at i:103421 original size:39 final size:39
Alignment explanation
Indices: 103344--103421 Score: 95
Period size: 39 Copynumber: 2.0 Consensus size: 39
103334 TCTTAACAGA
* * * *
103344 AAAAAATAAATAATGAAATAAAATACTTGCAAATAAAAT
1 AAAAAATAAAAAATGAAATAAAAAACTTGAAAAAAAAAT
*
103383 AAAAAATAAAAAAT-AAATAAAAAATTTGAAAGAAAAAAT
1 AAAAAATAAAAAATGAAATAAAAAACTTGAAA-AAAAAAT
103422 TAAATATAGA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
38 14 0.42
39 19 0.58
ACGTcount: A:0.72, C:0.03, G:0.05, T:0.21
Consensus pattern (39 bp):
AAAAAATAAAAAATGAAATAAAAAACTTGAAAAAAAAAT
Found at i:104143 original size:21 final size:21
Alignment explanation
Indices: 104114--104188 Score: 54
Period size: 21 Copynumber: 3.8 Consensus size: 21
104104 TAAACATTAT
*
104114 TAATTTATAAAATTAATAAAA
1 TAATATATAAAATTAATAAAA
104135 TAATATATATTAAA--AATAAAA
1 TAATATATA--AAATTAATAAAA
* *
104156 TAATA-AT---ACTAATTAAA
1 TAATATATAAAATTAATAAAA
*
104173 TATTATATAAAATTAA
1 TAATATATAAAATTAA
104189 AATATTTAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 16
0.68 0.06 0.26
Matches are distributed among these distances:
15 1 0.02
17 10 0.24
18 2 0.05
20 2 0.05
21 24 0.57
23 3 0.07
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.37
Consensus pattern (21 bp):
TAATATATAAAATTAATAAAA
Found at i:105500 original size:16 final size:17
Alignment explanation
Indices: 105479--105520 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
105469 TTATTTAATG
105479 ATAATAATATA-TATAT
1 ATAATAATATATTATAT
*
105495 ATAATAATATATTTTAT
1 ATAATAATATATTATAT
*
105512 TTAATAATA
1 ATAATAATA
105521 ATAATAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 11 0.48
17 12 0.52
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
ATAATAATATATTATAT
Found at i:105510 original size:39 final size:35
Alignment explanation
Indices: 105467--105540 Score: 103
Period size: 39 Copynumber: 2.0 Consensus size: 35
105457 ATTATTATTT
*
105467 TTTTATTTAATGATAATAATATATATATATAATAATATA
1 TTTTATTTAATAATAATAATA-AT-TA-A-AATAATATA
105506 TTTTATTTAATAATAATAATAATTAAAATAATATA
1 TTTTATTTAATAATAATAATAATTAAAATAATATA
105541 ATGAAAAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
35 9 0.26
36 1 0.03
37 2 0.06
38 2 0.06
39 20 0.59
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (35 bp):
TTTTATTTAATAATAATAATAATTAAAATAATATA
Found at i:109197 original size:21 final size:21
Alignment explanation
Indices: 109172--109214 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
109162 GAAACTGTTA
*
109172 AAAAATATTAATATTTTAAAT
1 AAAAATAATAATATTTTAAAT
109193 AAAAATAATAATATTTTAAAT
1 AAAAATAATAATATTTTAAAT
109214 A
1 A
109215 TTTTTTACCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
AAAAATAATAATATTTTAAAT
Found at i:113034 original size:4 final size:4
Alignment explanation
Indices: 113025--113052 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
113015 GAATATGCAC
113025 GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT
113053 ATATATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
GTAT
Found at i:113057 original size:2 final size:2
Alignment explanation
Indices: 113050--113077 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
113040 TGTATGTATG
113050 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
113078 ATCTATTGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:129070 original size:5 final size:5
Alignment explanation
Indices: 129040--129068 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
129030 GAGAGGAAGC
129040 CTTTT CTTTT CTTTT CTTTT CTTTT -TTTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT
129069 TTAGGGAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.17
5 20 0.83
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (5 bp):
CTTTT
Found at i:130552 original size:32 final size:31
Alignment explanation
Indices: 130498--130560 Score: 74
Period size: 32 Copynumber: 2.0 Consensus size: 31
130488 TCTAAAATTT
* *
130498 TTATTTTAAATTCAATTAATTTTATTTTTAAA
1 TTATTTTAAATTAAATTAATTTT-TCTTTAAA
*
130530 TTATTTTAATTTGAAATT-ATTTTTCTTTAAA
1 TTATTTTAAATT-AAATTAATTTTTCTTTAAA
130561 AAAATAAATC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
31 7 0.26
32 16 0.59
33 4 0.15
ACGTcount: A:0.35, C:0.03, G:0.02, T:0.60
Consensus pattern (31 bp):
TTATTTTAAATTAAATTAATTTTTCTTTAAA
Found at i:130553 original size:17 final size:16
Alignment explanation
Indices: 130498--130552 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
130488 TCTAAAATTT
* *
130498 TTATTTTAAATT-CAA
1 TTATTTTAATTTGAAA
* *
130513 TTAATTTTATTTTTAAA
1 TT-ATTTTAATTTGAAA
130530 TTATTTTAATTTGAAA
1 TTATTTTAATTTGAAA
130546 TTATTTT
1 TTATTTT
130553 TCTTTAAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
15 2 0.06
16 27 0.82
17 4 0.12
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (16 bp):
TTATTTTAATTTGAAA
Found at i:144620 original size:75 final size:75
Alignment explanation
Indices: 144497--144648 Score: 286
Period size: 75 Copynumber: 2.0 Consensus size: 75
144487 GCCGAAAACG
144497 GGGTGTCGAAGGGATTGCTAATGAGGTTAGGAAATACTTAACCTCTAGGAAGGCAGTGAGAAAGG
1 GGGTGTCGAAGGGATTGCTAATGAGGTTAGGAAATACTTAACCTCTAGGAAGGCAGTGAGAAAGG
144562 CCATCTGCAA
66 CCATCTGCAA
* *
144572 GGGTGTCGAAGGGATTGTTAATGAGGTTAGGAAATACTTAACCTCTAGGAAGGCAGTGTGAAAGG
1 GGGTGTCGAAGGGATTGCTAATGAGGTTAGGAAATACTTAACCTCTAGGAAGGCAGTGAGAAAGG
144637 CCATCTGCAA
66 CCATCTGCAA
144647 GG
1 GG
144649 CCTTGAAGAA
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.31, C:0.14, G:0.33, T:0.22
Consensus pattern (75 bp):
GGGTGTCGAAGGGATTGCTAATGAGGTTAGGAAATACTTAACCTCTAGGAAGGCAGTGAGAAAGG
CCATCTGCAA
Found at i:154828 original size:16 final size:16
Alignment explanation
Indices: 154807--154838 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
154797 ATCAAGATAT
154807 ATTATGAGTTCACTAA
1 ATTATGAGTTCACTAA
154823 ATTATGAGTTCACTAA
1 ATTATGAGTTCACTAA
154839 TTAAAAGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (16 bp):
ATTATGAGTTCACTAA
Found at i:156539 original size:79 final size:79
Alignment explanation
Indices: 156421--156578 Score: 307
Period size: 79 Copynumber: 2.0 Consensus size: 79
156411 AACAAACGGT
156421 TTTTCACTGCCTTCTAGGTCTTGCATAACATATTTGCATCCTCAACACCAGGAGCAACTTAAGTC
1 TTTTCACTGCCTTCTAGGTCTTGCATAACATATTTGCATCCTCAACACCAGGAGCAACTTAAGTC
156486 AGACAAAGTAAACC
66 AGACAAAGTAAACC
*
156500 TTTTCACTGCCTTCTAGGTCTTGCATAACATATTTGCATCCTCAACACCAGGAGCAGCTTAAGTC
1 TTTTCACTGCCTTCTAGGTCTTGCATAACATATTTGCATCCTCAACACCAGGAGCAACTTAAGTC
156565 AGACAAAGTAAACC
66 AGACAAAGTAAACC
156579 AGATATCAGG
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 78 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.28
Consensus pattern (79 bp):
TTTTCACTGCCTTCTAGGTCTTGCATAACATATTTGCATCCTCAACACCAGGAGCAACTTAAGTC
AGACAAAGTAAACC
Found at i:161726 original size:2 final size:2
Alignment explanation
Indices: 161719--161754 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
161709 TAAAGAGGTT
*
161719 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC CC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
161755 CCTGTTCCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (2 bp):
TC
Found at i:165348 original size:17 final size:17
Alignment explanation
Indices: 165326--165364 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
165316 ACAAGAATCT
*
165326 TCTTCCGCCTTACTGCC
1 TCTTCCGCCTAACTGCC
165343 TCTTCCGCCTAACTGCC
1 TCTTCCGCCTAACTGCC
165360 TCTTC
1 TCTTC
165365 TAGCTCGACT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.08, C:0.46, G:0.10, T:0.36
Consensus pattern (17 bp):
TCTTCCGCCTAACTGCC
Found at i:165990 original size:18 final size:18
Alignment explanation
Indices: 165963--165997 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
165953 TTTAATTGTT
*
165963 AGAAATGGAGAGAGAGAG
1 AGAAAAGGAGAGAGAGAG
165981 AGAAAAGGAGAGAGAGA
1 AGAAAAGGAGAGAGAGA
165998 AGGAGAGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.43, T:0.03
Consensus pattern (18 bp):
AGAAAAGGAGAGAGAGAG
Found at i:165993 original size:12 final size:12
Alignment explanation
Indices: 165976--166005 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
165966 AATGGAGAGA
165976 GAGAGAGAAAAG
1 GAGAGAGAAAAG
*
165988 GAGAGAGAGAAG
1 GAGAGAGAAAAG
166000 GAGAGA
1 GAGAGA
166006 AAGAAAAGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (12 bp):
GAGAGAGAAAAG
Found at i:165993 original size:14 final size:14
Alignment explanation
Indices: 165974--166013 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
165964 GAAATGGAGA
165974 GAGAGAGAGAAAAG
1 GAGAGAGAGAAAAG
165988 GAGAGAGAG--AAG
1 GAGAGAGAGAAAAG
*
166000 GAGAGAAAGAAAAG
1 GAGAGAGAGAAAAG
166014 CTGAAAGGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
12 11 0.48
14 12 0.52
ACGTcount: A:0.57, C:0.00, G:0.42, T:0.00
Consensus pattern (14 bp):
GAGAGAGAGAAAAG
Found at i:178430 original size:2 final size:2
Alignment explanation
Indices: 178418--178451 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
178408 ATCTTCCTGC
*
178418 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
178452 GGAGTTAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:178628 original size:57 final size:59
Alignment explanation
Indices: 178527--178663 Score: 161
Period size: 58 Copynumber: 2.3 Consensus size: 59
178517 AATGTTCTAT
* * *
178527 TTTCATCCCTAAAATATAACTATCATTCTAAATTAATCCTCAAAC-CCTTGAACATTTCAA
1 TTTCATCCCCAAAATATAAC--TCATTCTAAATTAATCCCCAAACTCCTTGAACATTCCAA
* ** **
178587 TTTCATCCCCAAAATATGAC-CATTCTAAATTGGTCCCCAAACTTTTTGAACATTCCAA
1 TTTCATCCCCAAAATATAACTCATTCTAAATTAATCCCCAAACTCCTTGAACATTCCAA
178645 TTTCATCCCCAAATATATA
1 TTTCATCCCCAAA-ATATA
178664 TATTAATCAC
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
57 19 0.29
58 25 0.38
59 4 0.06
60 18 0.27
ACGTcount: A:0.36, C:0.26, G:0.04, T:0.34
Consensus pattern (59 bp):
TTTCATCCCCAAAATATAACTCATTCTAAATTAATCCCCAAACTCCTTGAACATTCCAA
Found at i:178654 original size:30 final size:28
Alignment explanation
Indices: 178574--178657 Score: 78
Period size: 30 Copynumber: 2.9 Consensus size: 28
178564 CCTCAAACCC
*
178574 TTGAACATTTCAATTTCATCCCCAAAAT
1 TTGAACATTCCAATTTCATCCCCAAAAT
* * * * ** *
178602 ATGACCATTCTAAATTGGTCCCCAAACTTT
1 TTGAACATTCCAATTTCATCCCCAAA--AT
178632 TTGAACATTCCAATTTCATCCCCAAA
1 TTGAACATTCCAATTTCATCCCCAAA
178658 TATATATATT
Statistics
Matches: 40, Mismatches: 14, Indels: 2
0.71 0.25 0.04
Matches are distributed among these distances:
28 19 0.47
30 21 0.52
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.33
Consensus pattern (28 bp):
TTGAACATTCCAATTTCATCCCCAAAAT
Found at i:180044 original size:34 final size:35
Alignment explanation
Indices: 179959--180052 Score: 109
Period size: 34 Copynumber: 2.7 Consensus size: 35
179949 ATTTTTCAAC
* * * * *
179959 AAACATCTACAAAACTTTGAAAAATTATTTTTCAAAG
1 AAACATTTACCAAACTTTG-AAAACTA-TTTTAAAAA
*
179996 AAACGTTTACCAAACTTTGAAAACTA-TTTAAAAA
1 AAACATTTACCAAACTTTGAAAACTATTTTAAAAA
180030 AAACATTTACCAAACTTTGAAAA
1 AAACATTTACCAAACTTTGAAAA
180053 TCATTTTTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
34 28 0.56
36 6 0.12
37 16 0.32
ACGTcount: A:0.50, C:0.15, G:0.05, T:0.30
Consensus pattern (35 bp):
AAACATTTACCAAACTTTGAAAACTATTTTAAAAA
Found at i:180518 original size:275 final size:277
Alignment explanation
Indices: 180027--180578 Score: 1056
Period size: 275 Copynumber: 2.0 Consensus size: 277
180017 AACTATTTAA
180027 AAAAAACATTTACCAAACTTTGAAAATCATTTTTTTCAAAGTTGGTTACCAAACCTTGAACTTAA
1 AAAAAACATTTACCAAACTTTGAAAATCATTTTTTTCAAAGTTGGTTACCAAACCTTGAACTTAA
180092 CTTTTAACAATACTTTCAACAGTCTCCCACTTGAAGACTGATATTAATATGTCTCACACCTCGAT
66 CTTTTAACAATACTTTCAACAGTCTCCCACTTGAAGACTGATATTAATATGTCTCACACCTCGAT
180157 CAATGCAGCAGCATTTCTGGTCCTGTTATTCTAGCAGTGCCAACTGAAGTTGAACACAACTTCAG
131 CAATGCAGCAGCATTTCTGGTCCTGTTATTCTAGCAGTGCCAACTGAAGTTGAACACAACTTCAG
180222 TTTGTCAATGGTCACCGTCTTTGTCAACATGTCTGCTGGA-TTTGAGCTCCACT-ATCTTTTAAA
196 TTTGTCAATGGTCACCGTCTTTGTCAACATGTCTGCTGGATTTTGAGCTCCACTAATCTTTTAAA
180285 GCTTCAAAATCCCTTCT
261 GCTTCAAAATCCCTTCT
*
180302 AAAAAACATTTACCAAACTTTGAAAATCATTTTTTTCAAAGTTGGTTACCAAACTTTGAACTTAA
1 AAAAAACATTTACCAAACTTTGAAAATCATTTTTTTCAAAGTTGGTTACCAAACCTTGAACTTAA
180367 CTTTTAACAATACTTTCAACAGTCTCCCACTTGAAGACTGATATTAATATGTCTTCACACCTCGA
66 CTTTTAACAATACTTTCAACAGTCTCCCACTTGAAGACTGATATTAATATGTC-TCACACCTCGA
180432 TCAATGCAGCAGCATTTCTGGTCCTGTTATTCTAGCA-TGCCAACTGAAGTTGAACACAACTTCA
130 TCAATGCAGCAGCATTTCTGGTCCTGTTATTCTAGCAGTGCCAACTGAAGTTGAACACAACTTCA
*
180496 GTTTGTCAATGGTCACCGTCTTTGTCAACATGTCTGCTGGATTTTGAGCTCCACTAATCTTTTTA
195 GTTTGTCAATGGTCACCGTCTTTGTCAACATGTCTGCTGGATTTTGAGCTCCACTAATCTTTTAA
180561 AGCTTCAAAATCCCTTCT
260 AGCTTCAAAATCCCTTCT
180579 TCCAGAAGAG
Statistics
Matches: 272, Mismatches: 2, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
275 185 0.68
276 61 0.22
277 26 0.10
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.34
Consensus pattern (277 bp):
AAAAAACATTTACCAAACTTTGAAAATCATTTTTTTCAAAGTTGGTTACCAAACCTTGAACTTAA
CTTTTAACAATACTTTCAACAGTCTCCCACTTGAAGACTGATATTAATATGTCTCACACCTCGAT
CAATGCAGCAGCATTTCTGGTCCTGTTATTCTAGCAGTGCCAACTGAAGTTGAACACAACTTCAG
TTTGTCAATGGTCACCGTCTTTGTCAACATGTCTGCTGGATTTTGAGCTCCACTAATCTTTTAAA
GCTTCAAAATCCCTTCT
Found at i:187069 original size:20 final size:19
Alignment explanation
Indices: 187042--187102 Score: 68
Period size: 21 Copynumber: 3.0 Consensus size: 19
187032 CATTTTGGTG
187042 CAGAGGGAATCGATCCCCC
1 CAGAGGGAATCGATCCCCC
*
187061 CATGAGGGAACCGATTCCCCC
1 CA-GAGGGAATCGA-TCCCCC
*
187082 CACAGGGGAATCGATACCCCC
1 CAGA-GGGAATCGAT-CCCCC
187103 TTGGGGTACT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
19 2 0.06
20 12 0.34
21 21 0.60
ACGTcount: A:0.26, C:0.38, G:0.25, T:0.11
Consensus pattern (19 bp):
CAGAGGGAATCGATCCCCC
Found at i:187081 original size:21 final size:20
Alignment explanation
Indices: 187044--187083 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
187034 TTTTGGTGCA
*
187044 GAGGGAATCGATCCCCCCAT
1 GAGGGAACCGATCCCCCCAT
187064 GAGGGAACCGATTCCCCCCA
1 GAGGGAACCGA-TCCCCCCA
187084 CAGGGGAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.25, C:0.38, G:0.25, T:0.12
Consensus pattern (20 bp):
GAGGGAACCGATCCCCCCAT
Found at i:198587 original size:33 final size:33
Alignment explanation
Indices: 198550--198617 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
198540 ATTTTTTATT
198550 AATTTGAGATAAATACAAGATAATATCCTTTTA
1 AATTTGAGATAAATACAAGATAATATCCTTTTA
*
198583 AATTTGGGATAAATACAAGATAATATCCTTTTA
1 AATTTGAGATAAATACAAGATAATATCCTTTTA
198616 AA
1 AA
198618 GATAACTCTC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.46, C:0.09, G:0.10, T:0.35
Consensus pattern (33 bp):
AATTTGAGATAAATACAAGATAATATCCTTTTA
Found at i:198692 original size:35 final size:35
Alignment explanation
Indices: 198653--198723 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
198643 AACGTTCATA
* *
198653 ACCCTAATATTCATGATGTTCAAATCGGAGACTTC
1 ACCCTAATATTCATGATATTCAAATCAGAGACTTC
* *
198688 ACCCTAATATTTATGGTATTCAAATCAGAGACTTC
1 ACCCTAATATTCATGATATTCAAATCAGAGACTTC
198723 A
1 A
198724 AGGAACAACA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.32
Consensus pattern (35 bp):
ACCCTAATATTCATGATATTCAAATCAGAGACTTC
Found at i:209536 original size:29 final size:28
Alignment explanation
Indices: 209494--209649 Score: 87
Period size: 29 Copynumber: 5.3 Consensus size: 28
209484 CATTTTACAC
* **
209494 AAATAACACCTTTTTTAAATAATTACCA
1 AAATAGCACCTTTTCGAAATAATTACCA
* * *
209522 CAATAGCACCTTTTTCGAATTAATTCCCA
1 AAATAGCACC-TTTTCGAAATAATTACCA
* * *
209551 AAATAGCACCAATTTCGAATTAATTCCCA
1 AAATAGCACC-TTTTCGAAATAATTACCA
* * * * *
209580 GAATATCACTTTTTTTTCAAAAAAAATTACCA
1 AAATAGCAC---CTTTTC-GAAATAATTACCA
* * * *
209612 AAATAGCACCCATTTCGAATTAATTCCCC
1 AAATAGCA-CCTTTTCGAAATAATTACCA
209641 AAATAGCAC
1 AAATAGCAC
209650 TAAACCAAAT
Statistics
Matches: 96, Mismatches: 26, Indels: 12
0.72 0.19 0.09
Matches are distributed among these distances:
28 9 0.09
29 63 0.66
30 4 0.04
31 4 0.04
32 15 0.16
33 1 0.01
ACGTcount: A:0.40, C:0.23, G:0.05, T:0.31
Consensus pattern (28 bp):
AAATAGCACCTTTTCGAAATAATTACCA
Found at i:209704 original size:13 final size:13
Alignment explanation
Indices: 209686--209744 Score: 72
Period size: 13 Copynumber: 4.8 Consensus size: 13
209676 ACCTGTCAAC
*
209686 GGTCAACGAGTCG
1 GGTCAACGGGTCG
209699 GGTCAACGGGTCG
1 GGTCAACGGGTCG
209712 GGT---CGGGTCG
1 GGTCAACGGGTCG
*
209722 TGTCAAC-GGTCG
1 GGTCAACGGGTCG
209734 GGTCAACGGGT
1 GGTCAACGGGT
209745 AAACGGGTCG
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
10 9 0.23
12 11 0.28
13 19 0.49
ACGTcount: A:0.15, C:0.22, G:0.44, T:0.19
Consensus pattern (13 bp):
GGTCAACGGGTCG
Found at i:209726 original size:23 final size:22
Alignment explanation
Indices: 209695--209737 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
209685 CGGTCAACGA
209695 GTCGGGTCAACGGGTCGGGTCGG
1 GTCGGGTCAAC-GGTCGGGTCGG
*
209718 GTCGTGTCAACGGTCGGGTC
1 GTCGGGTCAACGGTCGGGTC
209738 AACGGGTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.09, C:0.23, G:0.47, T:0.21
Consensus pattern (22 bp):
GTCGGGTCAACGGTCGGGTCGG
Found at i:209778 original size:11 final size:10
Alignment explanation
Indices: 209757--209800 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
209747 ACGGGTCGTG
209757 ACCGGTCAAA
1 ACCGGTCAAA
209767 ACCGGTTCAAA
1 ACCGG-TCAAA
* *
209778 ATCGGT-TAA
1 ACCGGTCAAA
209787 ACCGGTCAAA
1 ACCGGTCAAA
209797 ACCG
1 ACCG
209801 ATTTCCAGCG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
9 7 0.25
10 12 0.43
11 9 0.32
ACGTcount: A:0.36, C:0.27, G:0.20, T:0.16
Consensus pattern (10 bp):
ACCGGTCAAA
Found at i:216897 original size:29 final size:29
Alignment explanation
Indices: 216871--216945 Score: 78
Period size: 29 Copynumber: 2.6 Consensus size: 29
216861 ACTTTTTTTT
216871 AAATAATTACCAAAATAACACCCTTTTCG
1 AAATAATTACCAAAATAACACCCTTTTCG
* * * **
216900 AATTAATTCCCAAAATAGCACCAATTTCG
1 AAATAATTACCAAAATAACACCCTTTTCG
* * *
216929 AATTAATTCCCAGAATA
1 AAATAATTACCAAAATA
216946 TAACCTTTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.44, C:0.23, G:0.05, T:0.28
Consensus pattern (29 bp):
AAATAATTACCAAAATAACACCCTTTTCG
Found at i:217034 original size:28 final size:29
Alignment explanation
Indices: 216970--217039 Score: 72
Period size: 28 Copynumber: 2.4 Consensus size: 29
216960 AAAAAAAATA
***
216970 CCAAAATAGCACCTATTTCGAATTAATTC
1 CCAAAATAGCACCTAAACCGAATTAATTC
*
216999 CTC-GAATAGCA-CTAAACCGAATTAATTC
1 C-CAAAATAGCACCTAAACCGAATTAATTC
*
217027 CCAAAATAACACC
1 CCAAAATAGCACC
217040 GGTCAACGGT
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
27 1 0.03
28 21 0.66
29 9 0.28
30 1 0.03
ACGTcount: A:0.41, C:0.27, G:0.07, T:0.24
Consensus pattern (29 bp):
CCAAAATAGCACCTAAACCGAATTAATTC
Found at i:217065 original size:13 final size:13
Alignment explanation
Indices: 217047--217076 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
217037 ACCGGTCAAC
217047 GGTCAACGAGTCG
1 GGTCAACGAGTCG
*
217060 GGTCAACGGGTCG
1 GGTCAACGAGTCG
217073 GGTC
1 GGTC
217077 GGGTCAACGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.23, G:0.43, T:0.17
Consensus pattern (13 bp):
GGTCAACGAGTCG
Found at i:217090 original size:17 final size:17
Alignment explanation
Indices: 217056--217106 Score: 84
Period size: 17 Copynumber: 2.9 Consensus size: 17
217046 CGGTCAACGA
217056 GTCGGGTCAACGGGTCGG
1 GTCGGGTCAAC-GGTCGG
217074 GTCGGGTCAACGGTCGG
1 GTCGGGTCAACGGTCGG
*
217091 GTCGGATCAACGGTCG
1 GTCGGGTCAACGGTCG
217107 TGTCAACGGG
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
17 21 0.66
18 11 0.34
ACGTcount: A:0.14, C:0.24, G:0.45, T:0.18
Consensus pattern (17 bp):
GTCGGGTCAACGGTCGG
Found at i:218432 original size:22 final size:23
Alignment explanation
Indices: 218398--218444 Score: 71
Period size: 22 Copynumber: 2.1 Consensus size: 23
218388 TACATATAAT
218398 AATACTATATCTACTTG-ATACTA
1 AATACTATATCTA-TTGTATACTA
218421 AATACT-TATCTATTGTATACTA
1 AATACTATATCTATTGTATACTA
218443 AA
1 AA
218445 GACATCGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 3 0.13
22 14 0.61
23 6 0.26
ACGTcount: A:0.40, C:0.15, G:0.04, T:0.40
Consensus pattern (23 bp):
AATACTATATCTATTGTATACTA
Found at i:218707 original size:47 final size:47
Alignment explanation
Indices: 218656--218753 Score: 178
Period size: 47 Copynumber: 2.1 Consensus size: 47
218646 TTTAAAATAG
* *
218656 AAATGGATCAAAACATATATGAAACTAAATTGAAGGGGCTCAAACAT
1 AAATGGATCAAAACATATATGAAACTAAATTGAAAGGGCTCAAACAA
218703 AAATGGATCAAAACATATATGAAACTAAATTGAAAGGGCTCAAACAA
1 AAATGGATCAAAACATATATGAAACTAAATTGAAAGGGCTCAAACAA
218750 AAAT
1 AAAT
218754 AAAACAAGCT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.52, C:0.12, G:0.15, T:0.20
Consensus pattern (47 bp):
AAATGGATCAAAACATATATGAAACTAAATTGAAAGGGCTCAAACAA
Found at i:219654 original size:515 final size:511
Alignment explanation
Indices: 218711--219662 Score: 1188
Period size: 515 Copynumber: 1.8 Consensus size: 511
218701 ATAAATGGAT
*
218711 CAAAACATATATGAAACTAAATTGAAAGGGCTCAAACAAAAATAAAACAAGCTTCGATTAAGGAC
1 CAAAACATATATGAAACTAAATTGAAAGGGCTCAAACAAAAATAAAACAAGCTTCGATTAAGAAC
* * * * * *
218776 CAAAACATATATGTGAGCCTCTGCCATGCCAGTCACCGTTTATTAGCGTCGGTCGCCGCTTTTCG
66 CAAAAAATATATGCGAGCCTCTACCACGCCAGCCACCGTTTATT---GTCGGTCGCCGCTTGTCG
** * *
218841 GTGGTGGAGAAGAGGGAAGGCAACACCAAATGATGCGCCTCCGAGCCCCCAGTACAAAGTTTACC
128 ACGGTAGAGAAGAGGGAAGGCAACACCAAATGATGCGCCTCCGAACCCCCAGTACAAAGTTTACC
* * * **
218906 TTAGAAAGGGTTAGATCAGCGTAGATATGATGGCAAAGCTTCGAAAAGAATCCTCCTCCGACGAC
193 TTAAAAAGGGTCAGATCAGCGTAGATATGATGGCAAAGCTTCAAAAAGAATCCTCCGACGACGAC
* * *
218971 ACTGAATAAGATAAGTTTTTTTTCTCTTTCTCTTTTTCTTCTCACAGTTTTTGTTTAATGGCTAA
258 ACTGAAGAAGATAAG-------T-TCTTTCTCTCTTTCTTCCCACAGTTTTTGTTTAATGGCTAA
* *
219036 TGTGAGCTCGTTTTGGTTTTCAAAAATGGTTTGGATGATTTCTCTCTTTTCTGGGTTTGCTTTTT
315 TGTGAGCTCGTTTTGGTTTTCAAAAATGGTTTGGATGATTGCTCTCTTTTCTGGGTTTGCCTTTT
* * *
219101 TTCTTTTCTTTCAAATATCCTTTTTTCTCCCCTATTTTCTCTTTTTTTTATGTTTTGAATAAGAT
380 TTCTTTTCTCTCAAATATCCTTTTTTCTCCACTATTTTCTATTTTTTTTATGTTTTGAATAAGAT
219166 CAAATATGTGAATAACCCAACATCACATATATAGCAAATTAAAATAACATTTAAAATAGATATGG
445 CAAATATGTGAATAACCCAACATCACATATATAGCAAATTAAAATAACATTTAAAATAGATATGG
219231 TC
510 TC
* *
219233 CAAAACATATATGAAGCTAAATTG-AAGGGCTCAAACAAAAATAAAACAAGCTTTG-TTCAAGAA
1 CAAAACATATATGAAACTAAATTGAAAGGGCTCAAACAAAAATAAAACAAGCTTCGATT-AAGAA
* * *
219296 CCAAAAAATATATGCGAGCCTCTATCGCGTCAGCCACCGTTTA-T-T-GGT-GCCGCTTGTCGAC
65 CCAAAAAATATATGCGAGCCTCTACCACGCCAGCCACCGTTTATTGTCGGTCGCCGCTTGTCGAC
* * *
219357 GGTAGAGAAGAGGGAAGGCAACACCAAATGATGTC-CCTCCGAATCCTCGGTACAAATTCGAGAT
130 GGTAGAGAAGAGGGAAGGCAACACCAAATGATG-CGCCTCCGAACCCCCAGTAC-AA----AG-T
* *
219421 CCGATTACCTTAAAAAGGGTCAGATC-GATGTAGATATGATGGCGAAGCTTCAAAAAGAATCCTC
188 ----TTACCTTAAAAAGGGTCAGATCAG-CGTAGATATGATGGCAAAGCTTCAAAAAGAATCCTC
* **
219485 CGATGACGACACTGAAGAAGATAAG-TCTTTCTCTCTTTCTTCCCATTGTTTTTGTTTAATGGCT
248 CGACGACGACACTGAAGAAGATAAGTTCTTTCTCTCTTTCTTCCCACAGTTTTTGTTTAATGGCT
* * ** * *
219549 ACTGTGAGTTCGTTTTGGTTTTTGAAAATGGTTTGGATGATTGCTCTCTTTTTTGGTTTTTGCCT
313 AATGTGAGCTCGTTTTGGTTTTCAAAAATGGTTTGGATGATTGCTCTCTTTTCTGG-GTTTGCCT
* *
219614 TTTTT-TTTTCTCTCTAAATCTCC-TTTTTCTCCATTATTTTCTATTTTTT
377 TTTTTCTTTTCTCTC-AAATATCCTTTTTTCTCCACTATTTTCTATTTTTT
219663 ATCTGTTTCA
Statistics
Matches: 370, Mismatches: 45, Indels: 37
0.82 0.10 0.08
Matches are distributed among these distances:
514 56 0.15
515 122 0.33
516 19 0.05
519 2 0.01
520 4 0.01
521 69 0.19
522 23 0.06
523 1 0.00
524 74 0.20
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (511 bp):
CAAAACATATATGAAACTAAATTGAAAGGGCTCAAACAAAAATAAAACAAGCTTCGATTAAGAAC
CAAAAAATATATGCGAGCCTCTACCACGCCAGCCACCGTTTATTGTCGGTCGCCGCTTGTCGACG
GTAGAGAAGAGGGAAGGCAACACCAAATGATGCGCCTCCGAACCCCCAGTACAAAGTTTACCTTA
AAAAGGGTCAGATCAGCGTAGATATGATGGCAAAGCTTCAAAAAGAATCCTCCGACGACGACACT
GAAGAAGATAAGTTCTTTCTCTCTTTCTTCCCACAGTTTTTGTTTAATGGCTAATGTGAGCTCGT
TTTGGTTTTCAAAAATGGTTTGGATGATTGCTCTCTTTTCTGGGTTTGCCTTTTTTCTTTTCTCT
CAAATATCCTTTTTTCTCCACTATTTTCTATTTTTTTTATGTTTTGAATAAGATCAAATATGTGA
ATAACCCAACATCACATATATAGCAAATTAAAATAACATTTAAAATAGATATGGTC
Found at i:220713 original size:31 final size:34
Alignment explanation
Indices: 220669--220731 Score: 87
Period size: 31 Copynumber: 1.9 Consensus size: 34
220659 TAATATTTAC
* *
220669 TTCAAACTATATATATAATA-AA-ATATACTATT
1 TTCAAAATATATATACAATATAATATATACTATT
220701 TTCAAAAT-TATATACAATATAATATATACTA
1 TTCAAAATATATATACAATATAATATATACTA
220732 CTATATATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
31 10 0.37
32 9 0.33
33 8 0.30
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.40
Consensus pattern (34 bp):
TTCAAAATATATATACAATATAATATATACTATT
Found at i:224176 original size:33 final size:33
Alignment explanation
Indices: 224133--224198 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
224123 TTCCATATCA
224133 TTCCAGCAGGGTTCCAATCGCCACCGAAACTGC
1 TTCCAGCAGGGTTCCAATCGCCACCGAAACTGC
* * *
224166 TTCCATCAGGGTTCCAATTGCCACTGAAACTGC
1 TTCCAGCAGGGTTCCAATCGCCACCGAAACTGC
224199 CTCACCTGCA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (33 bp):
TTCCAGCAGGGTTCCAATCGCCACCGAAACTGC
Found at i:234449 original size:16 final size:17
Alignment explanation
Indices: 234428--234461 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
234418 GGAGGCAACC
234428 CATTTTTAA-TTTTATT
1 CATTTTTAATTTTTATT
234444 CATTTTTAATTTTTATT
1 CATTTTTAATTTTTATT
234461 C
1 C
234462 GTTATTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.68
Consensus pattern (17 bp):
CATTTTTAATTTTTATT
Found at i:240444 original size:21 final size:21
Alignment explanation
Indices: 240418--240468 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
240408 ATGAATAGGG
*
240418 AAATGTGAACTTTGGATCAGT
1 AAATGTGAACTTTGAATCAGT
*
240439 AAATGTCAACTTTGAATCAGT
1 AAATGTGAACTTTGAATCAGT
*
240460 GAATGTGAA
1 AAATGTGAA
240469 TAGACTCTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.37, C:0.10, G:0.22, T:0.31
Consensus pattern (21 bp):
AAATGTGAACTTTGAATCAGT
Found at i:240723 original size:21 final size:22
Alignment explanation
Indices: 240602--240724 Score: 107
Period size: 21 Copynumber: 5.7 Consensus size: 22
240592 GTCGAGGGTC
240602 TATGTGGTC-CTTCGGGATAAA
1 TATGTGGTCACTTCGGGATAAA
*
240623 TATGTGGTCA-TTCGAGATAAA
1 TATGTGGTCACTTCGGGATAAA
*
240644 TATGTGG-CACTTCGGTGAAAAA
1 TATGTGGTCACTTCGG-GATAAA
*
240666 CCTATGTGG-CACTTCGGTGCA-AAC
1 --TATGTGGTCACTTCGG-G-ATAAA
* *
240690 TAAGTGGTC-CTTCGGGATAAT
1 TATGTGGTCACTTCGGGATAAA
240711 TATGTGG-CACTTCG
1 TATGTGGTCACTTCG
240725 ATGCAAATTA
Statistics
Matches: 86, Mismatches: 7, Indels: 18
0.77 0.06 0.16
Matches are distributed among these distances:
20 4 0.05
21 44 0.51
22 17 0.20
23 1 0.01
24 19 0.22
25 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (22 bp):
TATGTGGTCACTTCGGGATAAA
Found at i:244242 original size:21 final size:21
Alignment explanation
Indices: 244216--244255 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
244206 ATGAATAGGG
*
244216 AAATGTGAACTTTGGATCAGT
1 AAATGTGAACTTTGAATCAGT
244237 AAATGTGAACTTTGAATCA
1 AAATGTGAACTTTGAATCA
244256 ATGAATATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.33
Consensus pattern (21 bp):
AAATGTGAACTTTGAATCAGT
Found at i:244266 original size:21 final size:21
Alignment explanation
Indices: 244216--244267 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
244206 ATGAATAGGG
* * *
244216 AAATGTGAACTTTGGATCAGT
1 AAATATGAACTTTGAATCAAT
*
244237 AAATGTGAACTTTGAATCAAT
1 AAATATGAACTTTGAATCAAT
*
244258 GAATATGAAC
1 AAATATGAAC
244268 AGACTCTTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.40, C:0.10, G:0.19, T:0.31
Consensus pattern (21 bp):
AAATATGAACTTTGAATCAAT
Found at i:244432 original size:21 final size:22
Alignment explanation
Indices: 244398--244498 Score: 61
Period size: 21 Copynumber: 4.6 Consensus size: 22
244388 AGTCGAGGGT
244398 CTATGTGGTC-CTTCTGGATAAA
1 CTATGTGG-CACTTCTGGATAAA
*
244420 -TATGTGGCACTTCGGTGCA-AAA
1 CTATGTGGCACTTC--TGGATAAA
*
244442 CTTATGTGGCACTTC-GGTGTAAA
1 C-TATGTGGCACTTCTGG-ATAAA
* *
244465 CTATATGGTC-CTTCGGGAT-AA
1 CTATGTGG-CACTTCTGGATAAA
*
244486 TTATGTGGCACTT
1 CTATGTGGCACTT
244499 TAGTGCAAAT
Statistics
Matches: 62, Mismatches: 7, Indels: 21
0.69 0.08 0.23
Matches are distributed among these distances:
20 2 0.03
21 23 0.37
22 14 0.23
23 10 0.16
24 13 0.21
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.35
Consensus pattern (22 bp):
CTATGTGGCACTTCTGGATAAA
Done.