Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009014.1 Hibiscus syriacus cultivar Beakdansim tig00112402_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3470424
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 13
Found at i:7515 original size:43 final size:43
Alignment explanation
Indices: 7467--7553 Score: 165
Period size: 43 Copynumber: 2.0 Consensus size: 43
7457 GGCCTCCAAA
*
7467 GAACTTGTGTTGGATGAAGATGTCATTCACTTGTTAGAATTAT
1 GAACTTGTGTTGGATGAAGATGACATTCACTTGTTAGAATTAT
7510 GAACTTGTGTTGGATGAAGATGACATTCACTTGTTAGAATTAT
1 GAACTTGTGTTGGATGAAGATGACATTCACTTGTTAGAATTAT
7553 G
1 G
7554 CCATGGCATA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.29, C:0.09, G:0.24, T:0.38
Consensus pattern (43 bp):
GAACTTGTGTTGGATGAAGATGACATTCACTTGTTAGAATTAT
Found at i:10990 original size:3 final size:3
Alignment explanation
Indices: 10982--11020 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
10972 TTGTCCTAAC
10982 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
11021 GTGCAGGCCT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:11877 original size:17 final size:18
Alignment explanation
Indices: 11843--11877 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
11833 ATATGATTGA
11843 GTGTATCGGTACACACTAG
1 GTGTATCGGTA-ACACTAG
11862 GTGTATCGGT-ACACTA
1 GTGTATCGGTAACACTA
11878 ATTACATTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
19 10 0.62
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (18 bp):
GTGTATCGGTAACACTAG
Found at i:16292 original size:18 final size:19
Alignment explanation
Indices: 16254--16298 Score: 67
Period size: 18 Copynumber: 2.4 Consensus size: 19
16244 TTCTTGAGTA
16254 TAGCCTTGAGCAACAAGTC
1 TAGCCTTGAGCAACAAGTC
16273 TAGCCTTGAG-AA-ATAGTC
1 TAGCCTTGAGCAACA-AGTC
16291 TAGCCTTG
1 TAGCCTTG
16299 TTCCTCACTA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 1 0.04
18 14 0.56
19 10 0.40
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (19 bp):
TAGCCTTGAGCAACAAGTC
Found at i:20432 original size:17 final size:18
Alignment explanation
Indices: 20398--20432 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
20388 ATATAACTGA
20398 GTGTATCGGTAAACACTAG
1 GTGTATCGGT-AACACTAG
20417 GTGTATCGGT-ACACTA
1 GTGTATCGGTAACACTA
20433 ATTACATTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
19 10 0.62
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.29
Consensus pattern (18 bp):
GTGTATCGGTAACACTAG
Found at i:25850 original size:24 final size:25
Alignment explanation
Indices: 25803--25851 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
25793 ATTCATGAAG
25803 ATGGACATTCGATGAATGAAGAAAT
1 ATGGACATTCGATGAATGAAGAAAT
*
25828 ATGGACA-TCTGAT-AATGATGAAAT
1 ATGGACATTC-GATGAATGAAGAAAT
25852 TTGAACCTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 12 0.55
25 10 0.45
ACGTcount: A:0.43, C:0.08, G:0.22, T:0.27
Consensus pattern (25 bp):
ATGGACATTCGATGAATGAAGAAAT
Found at i:25858 original size:79 final size:80
Alignment explanation
Indices: 25753--25909 Score: 307
Period size: 79 Copynumber: 2.0 Consensus size: 80
25743 TGAAAAAGGG
25753 CATCTGATTAATGATGAAATTTGAACCTGATTGAAGAACGATTCATGAAGATGGACATTCGATGA
1 CATCTGATTAATGATGAAATTTGAACCTGATTGAAGAACGATTCATGAAGATGGACATTCGATGA
25818 ATGAAGAAATATGGA
66 ATGAAGAAATATGGA
25833 CATCTGA-TAATGATGAAATTTGAACCTGATTGAAGAACGATTCATGAAGATGGACATTCGATGA
1 CATCTGATTAATGATGAAATTTGAACCTGATTGAAGAACGATTCATGAAGATGGACATTCGATGA
25897 ATGAAGAAATATG
66 ATGAAGAAATATG
25910 AAATTGATTT
Statistics
Matches: 77, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
79 70 0.91
80 7 0.09
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.27
Consensus pattern (80 bp):
CATCTGATTAATGATGAAATTTGAACCTGATTGAAGAACGATTCATGAAGATGGACATTCGATGA
ATGAAGAAATATGGA
Found at i:25918 original size:55 final size:54
Alignment explanation
Indices: 25828--25937 Score: 123
Period size: 55 Copynumber: 2.0 Consensus size: 54
25818 ATGAAGAAAT
* * * * *
25828 ATGGACATCTGATAATGATGAAATTTGAACCTGATTGAAGAACGATTCATGAAG
1 ATGGACATCTGATAATGAAGAAATATGAAACTGATTGAAGAACAATCCATGAAG
* * *
25882 ATGGACAT-TCGATGAATGAAGAAATATGAAATTGATTTAAGACCAATCCATGAAG
1 ATGGACATCT-GAT-AATGAAGAAATATGAAACTGATTGAAGAACAATCCATGAAG
25937 A
1 A
25938 AAGATAACCG
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
53 1 0.02
54 11 0.24
55 34 0.74
ACGTcount: A:0.42, C:0.11, G:0.21, T:0.26
Consensus pattern (54 bp):
ATGGACATCTGATAATGAAGAAATATGAAACTGATTGAAGAACAATCCATGAAG
Found at i:26318 original size:6 final size:6
Alignment explanation
Indices: 26307--26365 Score: 73
Period size: 6 Copynumber: 9.3 Consensus size: 6
26297 ATTAACACCT
* *
26307 TTTGCA TTTGCA TTTTGCA TTTACA TTTAGCA TTTACA TTTAGCA TTTGCA
1 TTTGCA TTTGCA -TTTGCA TTTGCA TTT-GCA TTTGCA TTT-GCA TTTGCA
26358 TTTGCA TT
1 TTTGCA TT
26366 GTATGTTTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
6 30 0.65
7 16 0.35
ACGTcount: A:0.22, C:0.15, G:0.12, T:0.51
Consensus pattern (6 bp):
TTTGCA
Found at i:26324 original size:13 final size:13
Alignment explanation
Indices: 26306--26365 Score: 77
Period size: 13 Copynumber: 4.7 Consensus size: 13
26296 AATTAACACC
*
26306 TTTTGCATTTGCA
1 TTTTGCATTTACA
26319 TTTTGCATTTACA
1 TTTTGCATTTACA
*
26332 TTTAGCATTTACA
1 TTTTGCATTTACA
* *
26345 TTTAGCATTTGCA
1 TTTTGCATTTACA
26358 -TTTGCATT
1 TTTTGCATT
26366 GTATGTTTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
12 7 0.16
13 36 0.84
ACGTcount: A:0.22, C:0.15, G:0.12, T:0.52
Consensus pattern (13 bp):
TTTTGCATTTACA
Found at i:26346 original size:19 final size:19
Alignment explanation
Indices: 26310--26365 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
26300 AACACCTTTT
26310 GCATTTGCATTTTGCATTTA
1 GCATTTGCA-TTTGCATTTA
*
26330 -CATTTAGCATTTACATTTA
1 GCATTT-GCATTTGCATTTA
26349 GCATTTGCATTTGCATT
1 GCATTTGCATTTGCATT
26366 GTATGTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
19 24 0.75
20 8 0.25
ACGTcount: A:0.23, C:0.16, G:0.12, T:0.48
Consensus pattern (19 bp):
GCATTTGCATTTGCATTTA
Found at i:28696 original size:23 final size:23
Alignment explanation
Indices: 28670--28713 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
28660 AGAAATGTAG
28670 AAAGA-GAAAAAGAAAAGAAAATA
1 AAAGATGAAAAA-AAAAGAAAATA
*
28693 AAAGATGAAAAAAAGAGAAAA
1 AAAGATGAAAAAAAAAGAAAA
28714 AAATTGGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.77, C:0.00, G:0.18, T:0.05
Consensus pattern (23 bp):
AAAGATGAAAAAAAAAGAAAATA
Found at i:31613 original size:36 final size:37
Alignment explanation
Indices: 31518--31641 Score: 151
Period size: 37 Copynumber: 3.4 Consensus size: 37
31508 GGGTAAAGTT
* *
31518 AATCTTAAGCCTTCACTGATGAGTAGTGAAGCAAATC
1 AATCTTAAGTCTTCACTGAAGAGTAGTGAAGCAAATC
* **
31555 AATCTCAAGTCTTCACCAAAGAGTAGTGAAGCAAA-C
1 AATCTTAAGTCTTCACTGAAGAGTAGTGAAGCAAATC
* * *
31591 CATCTTAAGTTTTCACTGAAGAGAAGTGAAGCAAATC
1 AATCTTAAGTCTTCACTGAAGAGTAGTGAAGCAAATC
* *
31628 AATTTTAAGCCTTC
1 AATCTTAAGTCTTC
31642 TCAGGACAGT
Statistics
Matches: 71, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
36 30 0.42
37 41 0.58
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (37 bp):
AATCTTAAGTCTTCACTGAAGAGTAGTGAAGCAAATC
Found at i:31658 original size:73 final size:73
Alignment explanation
Indices: 31519--31667 Score: 176
Period size: 73 Copynumber: 2.0 Consensus size: 73
31509 GGTAAAGTTA
* * * *
31519 ATCTTAAGCCTTCACTGATGAGTAGTGAAGCAAATCAATCTCAAGTCTTCACCAAAGAGTAGTGA
1 ATCTTAAGCCTTCACTGAAGAGAAGTGAAGCAAATCAATCTCAAGCCTTCACCAAACAGTAGTGA
31584 AGCAAACC
66 AGCAAACC
** * * * *
31592 ATCTTAAGTTTTCACTGAAGAGAAGTGAAGCAAATCAATTTTAAGCCTTC-TCAGGACAGT-GTT
1 ATCTTAAGCCTTCACTGAAGAGAAGTGAAGCAAATCAATCTCAAGCCTTCACCA-AACAGTAG-T
31655 GAAGCAAACC
64 GAAGCAAACC
31665 ATC
1 ATC
31668 AGACCATAAG
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
72 3 0.05
73 61 0.95
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (73 bp):
ATCTTAAGCCTTCACTGAAGAGAAGTGAAGCAAATCAATCTCAAGCCTTCACCAAACAGTAGTGA
AGCAAACC
Found at i:32106 original size:54 final size:54
Alignment explanation
Indices: 32046--32607 Score: 693
Period size: 54 Copynumber: 10.5 Consensus size: 54
32036 AGTGAAGCAA
* * *
32046 AAGAAGATGTTCAAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCATTTG
1 AAGAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTG
* * *
32100 AAGAAGATGTTCGAGTTCTATACTCCATAAAGGAAGAGGGAGCGAACTCGTTTG
1 AAGAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTG
* * * * *
32154 TAGAAGATTGTTCGAGTTCTATACT-TCTGAAGAAACA-GGAGTGAACCCG--T-
1 AAGAAGA-TGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTG
* ** *
32204 AAGAAGATGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGAAAACCCATTTG
1 AAGAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTG
* * *
32258 AAGACGATGTTTGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCAGTTTG
1 AAGAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTG
* * * * * **
32312 CAGAAGATTGTTTGAGTTATATACTCCCTGAACAAAGAGGGAGCGAACCCGTAAG
1 AAGAAGA-TGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTG
* * ***
32367 AAGAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGTGAACCCATAAA
1 AAGAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTG
* * **
32421 AAGAAGTTGTTCGAGTTCTATACTCCCTAAAGAAAGAGAGAGCGAACCCGTAAG
1 AAGAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTG
* * * **
32475 AAGAAGATGTTCGACTTCCATGCTCCCTAAAGAAAGAGGGAGCGAACCCGTAAG
1 AAGAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTG
*
32529 AAGAAGTTGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTG
1 AAGAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTG
* *
32583 AAGAAGATGTTTGAGTTTTATACTC
1 AAGAAGATGTTCGAGTTCTATACTC
32608 TTTGAAAGAA
Statistics
Matches: 439, Mismatches: 62, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
49 17 0.04
50 16 0.04
51 10 0.02
53 11 0.03
54 321 0.73
55 64 0.15
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTG
Found at i:32242 original size:158 final size:159
Alignment explanation
Indices: 32046--32607 Score: 734
Period size: 158 Copynumber: 3.5 Consensus size: 159
32036 AGTGAAGCAA
* *
32046 AAGAAGATGTTCAAGTTCCATACTCCCTAAAGAAAGAGGGAGCGAACCCATTTGAAGAAGATGTT
1 AAGAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCCATTTGAAGAAGATGTT
* * *
32111 CGAGTTCTATACTCCATAAAGGAAGAGGGAGCGAACTCGTTTGTAGAAGATTGTTCGAGTTCTAT
66 CGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAAC-CGTTTGAAGAAGATTGTTCGAGTTCTAT
* * *
32176 ACT-TCTGAAGAAACA-GGAGTGAACCCGT
130 ACTCCCTGAAGAAAGAGGGAGCGAACCCGT
* ** *
32204 AAGAAGATGTTCGAGTTCTATACTCCCTGAAGAAAGAGGGAGAAAACCCATTTGAAGACGATGTT
1 AAGAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCCATTTGAAGAAGATGTT
* * * *
32269 TGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCAGTTTGCAGAAGATTGTTTGAGTTATAT
66 CGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACC-GTTTGAAGAAGATTGTTCGAGTTCTAT
*
32334 ACTCCCTGAACAAAGAGGGAGCGAACCCGT
130 ACTCCCTGAAGAAAGAGGGAGCGAACCCGT
* *** *
32364 AAGAAGAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGTGAACCCATAAAAAGAAGTT
1 ---AAGAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCCATTTGAAGAAGAT
* ** *
32429 GTTCGAGTTCTATACTCCCTAAAGAAAGAGAGAGCGAACCCGTAAGAAGAAGA-TGTTCGACTTC
63 GTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAA-CCGTTTGAAGAAGATTGTTCGAGTTC
* * *
32493 CATGCTCCCTAAAGAAAGAGGGAGCGAACCCGT
127 TATACTCCCTGAAGAAAGAGGGAGCGAACCCGT
*
32526 AAGAAGAAGTTGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCCGTTTGAAGAAGAT
1 AAGAAG-A--TGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCCATTTGAAGAAGAT
* *
32591 GTTTGAGTTTTATACTC
63 GTTCGAGTTCTATACTC
32608 TTTGAAAGAA
Statistics
Matches: 350, Mismatches: 44, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
157 1 0.00
158 119 0.34
159 15 0.04
160 13 0.04
162 101 0.29
163 99 0.28
164 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (159 bp):
AAGAAGATGTTCGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCCATTTGAAGAAGATGTT
CGAGTTCTATACTCCCTAAAGAAAGAGGGAGCGAACCGTTTGAAGAAGATTGTTCGAGTTCTATA
CTCCCTGAAGAAAGAGGGAGCGAACCCGT
Found at i:32623 original size:54 final size:54
Alignment explanation
Indices: 32046--32874 Score: 590
Period size: 54 Copynumber: 15.3 Consensus size: 54
32036 AGTGAAGCAA
* * *
32046 AAGAAGATGTTCAAGTTCCATACTCCCT-AAAGAAAGAGGGAGCGAACCCATTTG
1 AAGAAGATGTTCGAGTTCTATACTCCCTGAAAG-AAGAGGGAGCGAACCCGTTTG
* *
32100 AAGAAGATGTTCGAGTTCTATACTCCAT-AAAGGAAGAGGGAGCGAACTCGTTTG
1 AAGAAGATGTTCGAGTTCTATACTCCCTGAAA-GAAGAGGGAGCGAACCCGTTTG
* * * *
32154 TAGAAGATTGTTCGAGTTCTATACT-TCTG-AAGAA-ACAGGAGTGAACCCG--T-
1 AAGAAGA-TGTTCGAGTTCTATACTCCCTGAAAGAAGA-GGGAGCGAACCCGTTTG
** *
32204 AAGAAGATGTTCGAGTTCTATACTCCCTG-AAGAAAGAGGGAGAAAACCCATTTG
1 AAGAAGATGTTCGAGTTCTATACTCCCTGAAAG-AAGAGGGAGCGAACCCGTTTG
* * *
32258 AAGACGATGTTTGAGTTCTATACTCCCT-AAAGAAAGAGGGAGCGAACCAGTTTG
1 AAGAAGATGTTCGAGTTCTATACTCCCTGAAAG-AAGAGGGAGCGAACCCGTTTG
* * * **
32312 CAGAAGATTGTTTGAGTTATATACTCCCTGAACA-AAGAGGGAGCGAACCCGTAAG
1 AAGAAGA-TGTTCGAGTTCTATACTCCCTGAA-AGAAGAGGGAGCGAACCCGTTTG
* * ***
32367 AAGAAGATGTTCGAGTTCTATACTCCCT-AAAGAAAGAGGGAGTGAACCCATAAA
1 AAGAAGATGTTCGAGTTCTATACTCCCTGAAAG-AAGAGGGAGCGAACCCGTTTG
* * **
32421 AAGAAGTTGTTCGAGTTCTATACTCCCT-AAAGAAAGAGAGAGCGAACCCGTAAG
1 AAGAAGATGTTCGAGTTCTATACTCCCTGAAAG-AAGAGGGAGCGAACCCGTTTG
* * * **
32475 AAGAAGATGTTCGACTTCCATGCTCCCT-AAAGAAAGAGGGAGCGAACCCGTAAG
1 AAGAAGATGTTCGAGTTCTATACTCCCTGAAAG-AAGAGGGAGCGAACCCGTTTG
*
32529 AAGAAGTTGTTCGAGTTCTATACTCCCT-AAAGAAAGAGGGAGCGAACCCGTTTG
1 AAGAAGATGTTCGAGTTCTATACTCCCTGAAAG-AAGAGGGAGCGAACCCGTTTG
* * ** * * *
32583 AAGAAGATGTTTGAGTTTTATACTCTTTGAAAGAATAGGGAGC-AGACACGATTG
1 AAGAAGATGTTCGAGTTCTATACTCCCTGAAAGAAGAGGGAGCGA-ACCCGTTTG
** * ** ** * ** *
32637 TTGAAGATTATTCGAG-TCTTATACTCTATGAGGGAATAGGGAGC-AGACATGATTG
1 AAGAAGA-TGTTCGAGTTC-TATACTCCCTGAAAGAAGAGGGAGCGA-ACCCGTTTG
* * * * * * *
32692 TTA-AATATTGTTCGAG-TCTTATACTCTCTGAAGGAATAGGGAGC-AGACACGATTG
1 -AAGAAGA-TGTTCGAGTTC-TATACTCCCTGAAAGAAGAGGGAGCGA-ACCCGTTTG
** ** * *
32747 TTGAAGATTGTTCGAG-TCTTATACTCTTTGAAAGAATAGGGAGC-AGACAC-TATTG
1 AAGAAGA-TGTTCGAGTTC-TATACTCCCTGAAAGAAGAGGGAGCGA-ACCCGT-TTG
** * * *
32802 TTGAAGATTGTTCGAGTTCTATACTCCCTGAAAGAAAGAGGGAACGAACCTGTTGG
1 AAGAAGA-TGTTCGAGTTCTATACTCCCTGAAAG-AAGAGGGAGCGAACCCGTTTG
* *
32858 CAGAAGATTTCTCGAGT
1 AAGAAGATGT-TCGAGT
32875 CTGATATCCC
Statistics
Matches: 658, Mismatches: 89, Indels: 54
0.82 0.11 0.07
Matches are distributed among these distances:
49 17 0.03
50 12 0.02
51 12 0.02
52 3 0.00
53 17 0.03
54 337 0.51
55 229 0.35
56 28 0.04
57 3 0.00
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (54 bp):
AAGAAGATGTTCGAGTTCTATACTCCCTGAAAGAAGAGGGAGCGAACCCGTTTG
Found at i:32661 original size:55 final size:55
Alignment explanation
Indices: 32585--32837 Score: 357
Period size: 55 Copynumber: 4.6 Consensus size: 55
32575 CCCGTTTGAA
* * *
32585 GAAGA-TGTTTGAGTTTTATACTCTTTGAAAGAATAGGGAGCAGACACGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAAGAATAGGGAGCAGACACGATTGTT
* * ** *
32639 GAAGATTATTCGAGTCTTATACTCTATGAGGGAATAGGGAGCAGACATGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAAGAATAGGGAGCAGACACGATTGTT
* * *
32694 AAATATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAAGAATAGGGAGCAGACACGATTGTT
* *
32749 GAAGATTGTTCGAGTCTTATACTCTTTGAAAGAATAGGGAGCAGACACTATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAAGAATAGGGAGCAGACACGATTGTT
*
32804 GAAGATTGTTCGAGT-TCTATACTCCCTGAAAGAA
1 GAAGATTGTTCGAGTCT-TATACTCTCTGAAAGAA
32838 AGAGGGAACG
Statistics
Matches: 177, Mismatches: 20, Indels: 3
0.88 0.10 0.01
Matches are distributed among these distances:
54 6 0.03
55 171 0.97
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.32
Consensus pattern (55 bp):
GAAGATTGTTCGAGTCTTATACTCTCTGAAAGAATAGGGAGCAGACACGATTGTT
Found at i:33211 original size:2 final size:2
Alignment explanation
Indices: 33204--33243 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
33194 TGCATGTGAT
33204 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
33244 CATACATACA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:33636 original size:36 final size:37
Alignment explanation
Indices: 33535--33638 Score: 138
Period size: 37 Copynumber: 2.8 Consensus size: 37
33525 CATTTTCGTC
33535 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
* * * *
33572 TTGCTAGGATTCAAACTCCTAAAAATAGGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
* * *
33609 CTACTA-GATTTAAATTCCTAAAGATAGGAT
1 CTACTAGGATTCAAACTCCTAAAAATAGGAT
33639 CCACAAGCAC
Statistics
Matches: 58, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
36 21 0.36
37 37 0.64
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.30
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
Found at i:34303 original size:13 final size:13
Alignment explanation
Indices: 34210--34312 Score: 61
Period size: 13 Copynumber: 8.0 Consensus size: 13
34200 TCTTTTCGTC
* *
34210 ATTTAATTTATTA
1 ATTTTATTTATTT
*
34223 ATTTATATATATTT
1 ATTT-TATTTATTT
*
34237 ACTTT-TTTATTT
1 ATTTTATTTATTT
* *
34249 ATTTTATATATAT
1 ATTTTATTTATTT
* *
34262 ATATTATTCGTACTT
1 ATTTTATT--TATTT
*
34277 -TGTTA-TTA-TT
1 ATTTTATTTATTT
*
34287 ATTTTGTTTATTT
1 ATTTTATTTATTT
34300 ATTTTATTTATTT
1 ATTTTATTTATTT
34313 TCTTTTTCTT
Statistics
Matches: 67, Mismatches: 16, Indels: 14
0.69 0.16 0.14
Matches are distributed among these distances:
10 2 0.03
11 5 0.07
12 13 0.19
13 31 0.46
14 13 0.19
15 3 0.04
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.67
Consensus pattern (13 bp):
ATTTTATTTATTT
Found at i:38533 original size:29 final size:30
Alignment explanation
Indices: 38476--38541 Score: 98
Period size: 29 Copynumber: 2.2 Consensus size: 30
38466 TAAAGTTTGA
*
38476 AAAATTTTAGGGACTAAAAGGGTAATTTTC
1 AAAATTTTAGGGAATAAAAGGGTAATTTTC
* *
38506 AAAATTTTA-GGAATAAAAGTGTATTTTTC
1 AAAATTTTAGGGAATAAAAGGGTAATTTTC
38535 AAAATTT
1 AAAATTT
38542 AGGCTTTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
29 24 0.73
30 9 0.27
ACGTcount: A:0.42, C:0.05, G:0.15, T:0.38
Consensus pattern (30 bp):
AAAATTTTAGGGAATAAAAGGGTAATTTTC
Found at i:43710 original size:12 final size:13
Alignment explanation
Indices: 43693--43721 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
43683 TATAACATAG
43693 ATATATT-CATCT
1 ATATATTACATCT
43705 ATATATTACATCT
1 ATATATTACATCT
43718 ATAT
1 ATAT
43722 CTATGATGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.38, C:0.14, G:0.00, T:0.48
Consensus pattern (13 bp):
ATATATTACATCT
Found at i:57586 original size:20 final size:20
Alignment explanation
Indices: 57545--57586 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
57535 AAGAGGTATC
57545 GATACCCTGCTACAGGGTACT
1 GATACCCTGCTACA-GGTACT
57566 GATACCCTTGCTACA-GTACT
1 GATACCC-TGCTACAGGTACT
57586 G
1 G
57587 CTACAGTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 6 0.30
21 7 0.35
22 7 0.35
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (20 bp):
GATACCCTGCTACAGGTACT
Found at i:60514 original size:162 final size:161
Alignment explanation
Indices: 60230--60941 Score: 768
Period size: 162 Copynumber: 4.5 Consensus size: 161
60220 TATAATTCCT
* * ** * * * * *
60230 TTATTCTTCTACTTCAAC-GTATTTAGCTTTTCATTTAACTTGCATATTTGACACTTTTCTGTCA
1 TTATTCTTTTAC-TCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCA
* * * * * ** * * * *
60294 AATACACAGCTAATCCATTATTCTTTTACTCAATAGTGTTTAACCGTTCACCTAACTGGCATAAT
65 ATTGCACAG-TTAGCTATTATTCTTTTACTCAACGGTATTTAACCATTCATCTAACTGGCATAAA
* *
60359 TGACACCTTTCTACCAATTGCACAGTTAGGCTA
129 TGACATCTTTCTGCCAATTGCACAGTTAGGCTA
* * ** **
60392 TTATTTTTTTACTCAACCGTATTTAATTGTTCATCTATTTGGCATAATTGACACCTTTCTGCCAA
1 TTATTCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAA
* *
60457 TTGCACAGTTAGACTATTATTCTTTTACTCGACGGTATTTAACCGTTCATCTAACTGGCATAAAT
66 TTGCACAGTTAG-CTATTATTCTTTTACTCAACGGTATTTAACCATTCATCTAACTGGCATAAAT
** * *
60522 GACATCTTTCTGTTAATTGTACAGTTAGGTTA
130 GACATCTTTCTGCCAATTGCACAGTTAGGCTA
* *
60554 CTATTCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGACATAATTGACACCTTTCTGCCAA
1 TTATTCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAA
* * * * * *
60619 TTGCACAGTTAG-------GC-----CTCAAAGGCACTTAGCCATTCATCTAACTCGCATAAATG
66 TTGCACAGTTAGCTATTATTCTTTTACTCAACGGTATTTAACCATTCATCTAACTGGCATAAATG
* * * *
60672 ACAGCTTTCTGTCAAATGCACAATTAGGCTA
131 ACATCTTTCTGCCAATTGCACAGTTAGGCTA
* * * *
60703 TTATTCTTTTACTCAAGGGTATTTAACAGTTCATCTAACTGGCATAATTGACATCTTTCTACCAA
1 TTATTCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAA
* * * *
60768 TTGTACAGTTAGGCTATTATTCTTTTACTTAACGGTATTTAACCATTCATCTAACTAGCATAATT
66 TTGCACAGTTA-GCTATTATTCTTTTACTCAACGGTATTTAACCATTCATCTAACTGGCATAAAT
60833 GACATCTTTCTGCCAATTGCACAGTTAGGCTA
130 GACATCTTTCTGCCAATTGCACAGTTAGGCTA
* * *
60865 TTATTCTTTTACTCAACAGTATTTAATCATTCATCTAA-TGAGCATAATTGACACCTTTCTGCCA
1 TTATTCTTTTACTCAACGGTATTTAACCGTTCATCTAACTG-GCATAATTGACACCTTTCTGCCA
60929 ATTGCACAGTTAG
65 ATTGCACAGTTAG
60942 GACTCAAAGG
Statistics
Matches: 456, Mismatches: 78, Indels: 33
0.80 0.14 0.06
Matches are distributed among these distances:
149 126 0.28
150 1 0.00
154 1 0.00
157 1 0.00
161 10 0.02
162 317 0.70
ACGTcount: A:0.28, C:0.21, G:0.12, T:0.39
Consensus pattern (161 bp):
TTATTCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAA
TTGCACAGTTAGCTATTATTCTTTTACTCAACGGTATTTAACCATTCATCTAACTGGCATAAATG
ACATCTTTCTGCCAATTGCACAGTTAGGCTA
Found at i:60631 original size:81 final size:81
Alignment explanation
Indices: 60230--60942 Score: 651
Period size: 81 Copynumber: 9.0 Consensus size: 81
60220 TATAATTCCT
* * ** * * * *
60230 TTATTCTTCTACTTCAAC-GTATTTAGCTTTTCATTTAACTTG-CATATTTGACACTTTTCTGTC
1 TTATTCTTTTAC-TCAACGGTATTTAACCGTTCATCTAAC-TGACATAATTGACACCTTTCTGCC
* * * ** *
60293 AAATACACAGCTAATCCA
64 AATTGCACAGTTAGGCTA
** * * * *
60311 TTATTCTTTTACTCAATAGTGTTTAACCGTTCACCTAACTGGCATAATTGACACCTTTCTACCAA
1 TTATTCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGACATAATTGACACCTTTCTGCCAA
60376 TTGCACAGTTAGGCTA
66 TTGCACAGTTAGGCTA
* * ** ** *
60392 TTATTTTTTTACTCAACCGTATTTAATTGTTCATCTATTTGGCATAATTGACACCTTTCTGCCAA
1 TTATTCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGACATAATTGACACCTTTCTGCCAA
*
60457 TTGCACAGTTAGACTA
66 TTGCACAGTTAGGCTA
* * * * **
60473 TTATTCTTTTACTCGACGGTATTTAACCGTTCATCTAACTGGCATAAATGACATCTTTCTGTTAA
1 TTATTCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGACATAATTGACACCTTTCTGCCAA
* *
60538 TTGTACAGTTAGGTTA
66 TTGCACAGTTAGGCTA
*
60554 CTATTCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGACATAATTGACACCTTTCTGCCAA
1 TTATTCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGACATAATTGACACCTTTCTGCCAA
60619 TTGCACAGTTAGGCCTCA
66 TTGCACAGTTAGG-CT-A
* ** ** * * * *
60637 -AAGGCACTTAGC-C-A--TTCATCTAACTCG--CA--TAAATGAC---A--G----CTTTCTGT
1 TTATTCTTTTA-CTCAACGGT-ATTTAAC-CGTTCATCTAACTGACATAATTGACACCTTTCTGC
* *
60684 CAAATGCACAATTAGGCTA
63 CAATTGCACAGTTAGGCTA
* * * * *
60703 TTATTCTTTTACTCAAGGGTATTTAACAGTTCATCTAACTGGCATAATTGACATCTTTCTACCAA
1 TTATTCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGACATAATTGACACCTTTCTGCCAA
*
60768 TTGTACAGTTAGGCTA
66 TTGCACAGTTAGGCTA
* * *
60784 TTATTCTTTTACTTAACGGTATTTAACCATTCATCTAACT-AGCATAATTGACATCTTTCTGCCA
1 TTATTCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGA-CATAATTGACACCTTTCTGCCA
60848 ATTGCACAGTTAGGCTA
65 ATTGCACAGTTAGGCTA
* * *
60865 TTATTCTTTTACTCAACAGTATTTAATCATTCATCTAA-TGAGCATAATTGACACCTTTCTGCCA
1 TTATTCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGA-CATAATTGACACCTTTCTGCCA
60929 ATTGCACAGTTAGG
65 ATTGCACAGTTAGG
60943 ACTCAAAGGC
Statistics
Matches: 516, Mismatches: 89, Indels: 54
0.78 0.14 0.08
Matches are distributed among these distances:
66 2 0.00
67 8 0.02
68 23 0.04
69 6 0.01
70 3 0.01
72 7 0.01
74 1 0.00
75 1 0.00
77 8 0.02
79 3 0.01
80 13 0.03
81 432 0.84
82 7 0.01
83 2 0.00
ACGTcount: A:0.28, C:0.21, G:0.12, T:0.39
Consensus pattern (81 bp):
TTATTCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGACATAATTGACACCTTTCTGCCAA
TTGCACAGTTAGGCTA
Found at i:60832 original size:230 final size:230
Alignment explanation
Indices: 60433--60862 Score: 682
Period size: 230 Copynumber: 1.9 Consensus size: 230
60423 CATCTATTTG
* * * *
60433 GCATAATTGACACCTTTCTGCCAATTGCACAGTTAGACTATTATTCTTTTACTCGACGGTATTTA
1 GCATAAATGACACCTTTCTGCCAAATGCACAATTAGACTATTATTCTTTTACTCAACGGTATTTA
* *** *
60498 ACCGTTCATCTAACTGGCATAAATGACATCTTTCTGTTAATTGTACAGTTAGGTTACTATTCTTT
66 ACAGTTCATCTAACTGGCATAAATGACATCTTTCTACCAATTGTACAGTTAGGCTACTATTCTTT
*
60563 TACTCAACGGTATTTAACCGTTCATCTAACTGACATAATTGACACCTTTCTGCCAATTGCACAGT
131 TACTCAACGGTATTTAACCATTCATCTAACTGACATAATTGACACCTTTCTGCCAATTGCACAGT
60628 TAGGCCTCAAAGGCACTTAGCCATTCATCTAACTC
196 TAGGCCTCAAAGGCACTTAGCCATTCATCTAACTC
* * * *
60663 GCATAAATGACAGCTTTCTGTCAAATGCACAATTAGGCTATTATTCTTTTACTCAAGGGTATTTA
1 GCATAAATGACACCTTTCTGCCAAATGCACAATTAGACTATTATTCTTTTACTCAACGGTATTTA
* *
60728 ACAGTTCATCTAACTGGCATAATTGACATCTTTCTACCAATTGTACAGTTAGGCTATTATTCTTT
66 ACAGTTCATCTAACTGGCATAAATGACATCTTTCTACCAATTGTACAGTTAGGCTACTATTCTTT
* *
60793 TACTTAACGGTATTTAACCATTCATCTAACT-AGCATAATTGACATCTTTCTGCCAATTGCACAG
131 TACTCAACGGTATTTAACCATTCATCTAACTGA-CATAATTGACACCTTTCTGCCAATTGCACAG
60857 TTAGGC
195 TTAGGC
60863 TATTATTCTT
Statistics
Matches: 181, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
229 1 0.01
230 180 0.99
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.36
Consensus pattern (230 bp):
GCATAAATGACACCTTTCTGCCAAATGCACAATTAGACTATTATTCTTTTACTCAACGGTATTTA
ACAGTTCATCTAACTGGCATAAATGACATCTTTCTACCAATTGTACAGTTAGGCTACTATTCTTT
TACTCAACGGTATTTAACCATTCATCTAACTGACATAATTGACACCTTTCTGCCAATTGCACAGT
TAGGCCTCAAAGGCACTTAGCCATTCATCTAACTC
Found at i:60950 original size:311 final size:310
Alignment explanation
Indices: 60340--61011 Score: 995
Period size: 311 Copynumber: 2.2 Consensus size: 310
60330 TGTTTAACCG
* * ** * *
60340 TTCACCTAACTGGCATAATTGACACCTTTCTACCAATTGCACAGTTAGGCTATTATTTTTTTACT
1 TTCATCTAACTGGCATAAATGACACCTTTCTGTCAAATGCACAGTTAGGCTATTATTCTTTTACT
** ** *
60405 CAACCGTATTTAATTGTTCATCTATTTGGCATAATTGACACCTTTCTGCCAATTGCACAGTTAGA
66 CAACCGTATTTAACAGTTCATCTAACTGGCATAATTGACACCTTTCTACCAATTGCACAGTTAGA
* * * *
60470 CTATTATTCTTTTACTCGACGGTATTTAACCGTTCATCTAACTGGCATAAATGACATCTTTCTGT
131 CTATTATTCTTTTACTCAACGGTATTTAACCATTCATCTAACTAGCATAAATGACATCTTTCTGC
* * * * *
60535 TAATTGTACAGTTAGGTTACTATTCTTTTACTCAACGGTATTTAACCGTTCATCTAACTGACATA
196 CAATTGCACAGTTAGGCTACTATTCTTTTACTCAACAGTATTTAACCATTCATCTAACTGACATA
*
60600 ATTGACACCTTTCTGCCAATTGCACAGTTAGGCCTCAAAGGCACTTAGCC
261 ATTGACACCTTTCTGCCAATTGCACAGTTAGGACTCAAAGGCACTTAGCC
* * *
60650 ATTCATCTAACTCGCATAAATGACAGCTTTCTGTCAAATGCACAATTAGGCTATTATTCTTTTAC
1 -TTCATCTAACTGGCATAAATGACACCTTTCTGTCAAATGCACAGTTAGGCTATTATTCTTTTAC
** * *
60715 TCAAGGGTATTTAACAGTTCATCTAACTGGCATAATTGACATCTTTCTACCAATTGTACAGTTAG
65 TCAACCGTATTTAACAGTTCATCTAACTGGCATAATTGACACCTTTCTACCAATTGCACAGTTAG
* * *
60780 GCTATTATTCTTTTACTTAACGGTATTTAACCATTCATCTAACTAGCATAATTGACATCTTTCTG
130 ACTATTATTCTTTTACTCAACGGTATTTAACCATTCATCTAACTAGCATAAATGACATCTTTCTG
* *
60845 CCAATTGCACAGTTAGGCTATTATTCTTTTACTCAACAGTATTTAATCATTCATCTAA-TGAGCA
195 CCAATTGCACAGTTAGGCTACTATTCTTTTACTCAACAGTATTTAACCATTCATCTAACTGA-CA
60909 TAATTGACACCTTTCTGCCAATTGCACAGTTAGGACTCAAAGGCACTTAGCC
259 TAATTGACACCTTTCTGCCAATTGCACAGTTAGGACTCAAAGGCACTTAGCC
* *
60961 TTAGATCTAACTGGCATAAATGACACCTTTCTGTCAAATGAACAGTTAGGC
1 TT-CATCTAACTGGCATAAATGACACCTTTCTGTCAAATGCACAGTTAGGC
61012 CTCAAAGGAA
Statistics
Matches: 321, Mismatches: 38, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
310 5 0.02
311 316 0.98
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.36
Consensus pattern (310 bp):
TTCATCTAACTGGCATAAATGACACCTTTCTGTCAAATGCACAGTTAGGCTATTATTCTTTTACT
CAACCGTATTTAACAGTTCATCTAACTGGCATAATTGACACCTTTCTACCAATTGCACAGTTAGA
CTATTATTCTTTTACTCAACGGTATTTAACCATTCATCTAACTAGCATAAATGACATCTTTCTGC
CAATTGCACAGTTAGGCTACTATTCTTTTACTCAACAGTATTTAACCATTCATCTAACTGACATA
ATTGACACCTTTCTGCCAATTGCACAGTTAGGACTCAAAGGCACTTAGCC
Found at i:60985 original size:68 final size:68
Alignment explanation
Indices: 60896--61076 Score: 256
Period size: 68 Copynumber: 2.7 Consensus size: 68
60886 TTTAATCATT
* * * *
60896 CATCTAA-TGAGCATAATTGACACCTTTCTGCCAATTGCACAGTTAGGACTCAAAGGCACTTAGC
1 CATCTAACTG-GCATAAATGACACCTTTCTGTCAAATGCACAGTTAGGACTCAAAGGAACTTAGC
60960 CTTA
65 CTTA
* * * *
60964 GATCTAACTGGCATAAATGACACCTTTCTGTCAAATGAACAGTTAGGCCTCAAAGGAACTTAGCG
1 CATCTAACTGGCATAAATGACACCTTTCTGTCAAATGCACAGTTAGGACTCAAAGGAACTTAGCC
*
61029 TTT
66 TTA
*
61032 CATCTAACTGGCATAAATGACACATTTCTGTCAAATGCACAGTTA
1 CATCTAACTGGCATAAATGACACCTTTCTGTCAAATGCACAGTTA
61077 AGTTATTATT
Statistics
Matches: 100, Mismatches: 12, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
68 98 0.98
69 2 0.02
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.28
Consensus pattern (68 bp):
CATCTAACTGGCATAAATGACACCTTTCTGTCAAATGCACAGTTAGGACTCAAAGGAACTTAGCC
TTA
Found at i:61211 original size:217 final size:217
Alignment explanation
Indices: 60813--61228 Score: 584
Period size: 217 Copynumber: 1.9 Consensus size: 217
60803 TATTTAACCA
* * *
60813 TTCATCTAACTAGCATAATTGACATCTTTCTGCCAATTGCACAGTTAGGCTATTATTCTTTTACT
1 TTCATCTAACTAGCATAAATGACATCTTTCTGCCAAATGCACAGTTAAGCTATTATTCTTTTACT
* * * *
60878 CAACAGTATTTAATCATTCATCTAATGAGCATAATTGACACCTTTCTGCCAATTGCACAGTTAGG
66 CAACAGTATTTAACCATTCATCGAATGAGAATAATTGACACATTTCTGCCAATTGCACAGTTAGG
* * *
60943 ACTCAAAGGCACTTAGCCTTAGATCTAACTGGCATAAATGACACCTTTCTGTCAAATGAACAGTT
131 ACTCAAAGGCACTTAGCCTTACATCTAACTAGCATAAATGACACATTTCTGTCAAATGAACAGTT
61008 AGGCCTCAAAGGAACTTAGCGT
196 AGGCCTCAAAGGAACTTAGCGT
* * *
61030 TTCATCTAACTGGCATAAATGACA-CATTTCTGTCAAATGCACAGTTAAGTTATTATTCTTTTAC
1 TTCATCTAACTAGCATAAATGACATC-TTTCTGCCAAATGCACAGTTAAGCTATTATTCTTTTAC
** * * *
61094 TCAATGGTATTTAACCGTTCATCGAACTG-GAATAATTGACACATTTTTTCCAATTGCACAGTTA
65 TCAACAGTATTTAACCATTCATCGAA-TGAGAATAATTGACACATTTCTGCCAATTGCACAGTTA
* * * * * *
61158 GGCCTCAAAGGCACTTAGCCTTTCTTCTATCTAGCATAAGTGACACATTTCTGTCAAATGCACAG
129 GGACTCAAAGGCACTTAGCCTTACATCTAACTAGCATAAATGACACATTTCTGTCAAATGAACAG
61223 TTAGGC
194 TTAGGC
61229 TATTATTCTT
Statistics
Matches: 173, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
216 1 0.01
217 170 0.98
218 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (217 bp):
TTCATCTAACTAGCATAAATGACATCTTTCTGCCAAATGCACAGTTAAGCTATTATTCTTTTACT
CAACAGTATTTAACCATTCATCGAATGAGAATAATTGACACATTTCTGCCAATTGCACAGTTAGG
ACTCAAAGGCACTTAGCCTTACATCTAACTAGCATAAATGACACATTTCTGTCAAATGAACAGTT
AGGCCTCAAAGGAACTTAGCGT
Found at i:62116 original size:95 final size:96
Alignment explanation
Indices: 61929--62150 Score: 274
Period size: 95 Copynumber: 2.3 Consensus size: 96
61919 AAGCTCAATA
* * * *
61929 GTATCGATACCAC-TACCCTGGTACCGATACT-TCTATACTATGGTACTGATACCCTATTTTGGT
1 GTATCGATACC-CTTACCATGGTATCGATACTAACTATACTATGGTACTGATACCCTATTTCGGT
* * *
61992 ATCGATACCAATTTTAGTTTCGATGTTTCCTG
65 ATCGATACCAACTTTAGATTCGATGTTTCCAG
* *
62024 GTATCGATACCCTTATCATGGTATCGATACTAAC-ATACTATGGTA-TCGATACCC-CTTTCGGT
1 GTATCGATACCCTTACCATGGTATCGATACTAACTATACTATGGTACT-GATACCCTATTTCGGT
* *
62086 ATCGATACTAGCTTTAGATTCGATGTTTTCCAG
65 ATCGATACCAACTTTAGATTCGATG-TTTCCAG
*
62119 GTATCGATACCCTTACCATGTTATCGATACTA
1 GTATCGATACCCTTACCATGGTATCGATACTA
62151 CCTAGTCGGT
Statistics
Matches: 110, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
94 29 0.26
95 80 0.73
96 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (96 bp):
GTATCGATACCCTTACCATGGTATCGATACTAACTATACTATGGTACTGATACCCTATTTCGGTA
TCGATACCAACTTTAGATTCGATGTTTCCAG
Found at i:62628 original size:21 final size:21
Alignment explanation
Indices: 62594--62633 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
62584 TAACTTAGTT
* *
62594 TTAATCTAATATAATATTTCC
1 TTAATCTAACATAACATTTCC
*
62615 TTAATCTTACATAACATTT
1 TTAATCTAACATAACATTT
62634 AAGTTTGCAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.47
Consensus pattern (21 bp):
TTAATCTAACATAACATTTCC
Found at i:64923 original size:20 final size:20
Alignment explanation
Indices: 64895--64934 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
64885 CGTTGGGCTT
*
64895 GATATTACTGTAGCAGTATC
1 GATACTACTGTAGCAGTATC
64915 GATACTACTGTAGCAGTATC
1 GATACTACTGTAGCAGTATC
64935 AGTACCCATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (20 bp):
GATACTACTGTAGCAGTATC
Found at i:67671 original size:20 final size:20
Alignment explanation
Indices: 67643--67710 Score: 57
Period size: 20 Copynumber: 3.5 Consensus size: 20
67633 TACTGTTCAT
* * **
67643 TACTGTTCACACCGTATTGA
1 TACTATTCACACAGTATAAA
*
67663 TACTATTCATACAGTATAAA
1 TACTATTCACACAGTATAAA
* * *
67683 TACTATTCATATAGTA-CAA
1 TACTATTCACACAGTATAAA
67702 TACTATTCA
1 TACTATTCA
67711 TAAAAAAATT
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
19 11 0.27
20 30 0.73
ACGTcount: A:0.37, C:0.19, G:0.07, T:0.37
Consensus pattern (20 bp):
TACTATTCACACAGTATAAA
Found at i:67705 original size:19 final size:20
Alignment explanation
Indices: 67662--67712 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
67652 CACCGTATTG
67662 ATACTATTCATACAGTATAA
1 ATACTATTCATACAGTATAA
* *
67682 ATACTATTCATATAGTA-CA
1 ATACTATTCATACAGTATAA
67701 ATACTATTCATA
1 ATACTATTCATA
67713 AAAAAATTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 13 0.45
20 16 0.55
ACGTcount: A:0.43, C:0.16, G:0.04, T:0.37
Consensus pattern (20 bp):
ATACTATTCATACAGTATAA
Found at i:68432 original size:19 final size:17
Alignment explanation
Indices: 68410--68455 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 17
68400 TGAAACGAAT
68410 ATAAAAAAAATGAAATTGA
1 ATAAAAAAAAT-AAA-TGA
68429 ATAAAATAAAATAAATGA
1 ATAAAA-AAAATAAATGA
*
68447 AGAAAAAAA
1 ATAAAAAAA
68456 TATATATACA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 3 0.12
18 8 0.32
19 9 0.36
20 5 0.20
ACGTcount: A:0.74, C:0.00, G:0.09, T:0.17
Consensus pattern (17 bp):
ATAAAAAAAATAAATGA
Found at i:68555 original size:9 final size:9
Alignment explanation
Indices: 68532--68583 Score: 59
Period size: 9 Copynumber: 5.4 Consensus size: 9
68522 AAAAGAAACT
*
68532 AAAAACATA
1 AAAAAAATA
*
68541 ATAAAAATA
1 AAAAAAATA
68550 AAAAAATAGTA
1 AAAAAA-A-TA
68561 TAAAAAAATA
1 -AAAAAAATA
68571 AAAAAAATA
1 AAAAAAATA
68580 AAAA
1 AAAA
68584 TATATAAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
9 25 0.68
10 3 0.08
11 3 0.08
12 6 0.16
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.15
Consensus pattern (9 bp):
AAAAAAATA
Found at i:68556 original size:8 final size:8
Alignment explanation
Indices: 68496--68612 Score: 51
Period size: 8 Copynumber: 14.1 Consensus size: 8
68486 AGTGTTTTTT
68496 TAAAAAAA
1 TAAAAAAA
*
68504 GAAAAATAA
1 TAAAAA-AA
* *
68513 TAATAAGA
1 TAAAAAAA
*
68521 GAAAAGAAA
1 TAAAA-AAA
*
68530 CTAAAAACA
1 -TAAAAAAA
68539 TAATAAAAA
1 TAA-AAAAA
68548 TAAAAAAA
1 TAAAAAAA
**
68556 T---AGTA
1 TAAAAAAA
68561 TAAAAAAA
1 TAAAAAAA
68569 TAAAAAAAA
1 T-AAAAAAA
68578 TAAAAATATA
1 TAAAAA-A-A
* *
68588 TAAATATA
1 TAAAAAAA
*
68596 TATAAAAA
1 TAAAAAAA
*
68604 TATAAAAA
1 TAAAAAAA
68612 T
1 T
68613 GTATGTATAA
Statistics
Matches: 80, Mismatches: 19, Indels: 20
0.67 0.16 0.17
Matches are distributed among these distances:
5 3 0.04
8 41 0.51
9 26 0.32
10 10 0.12
ACGTcount: A:0.74, C:0.02, G:0.04, T:0.20
Consensus pattern (8 bp):
TAAAAAAA
Found at i:69419 original size:37 final size:37
Alignment explanation
Indices: 69321--69422 Score: 123
Period size: 37 Copynumber: 2.8 Consensus size: 37
69311 ATGCTTGTGG
* ** * *
69321 ATCCTATCTTTAGGAGTTTAAATAATAGTAGAACTCT
1 ATCCTATTTTTAGGAGTTTAAATCCTAGCAAAACTCT
* * *
69358 ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAATTTT
1 ATCCTATTTTTAGGAGTTTAAATCCTAGCAAAACTCT
*
69395 ATCCTATTTTTAAGAGTTTAAATCCTAG
1 ATCCTATTTTTAGGAGTTTAAATCCTAG
69423 TAGGACGAAA
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 55 1.00
ACGTcount: A:0.32, C:0.14, G:0.13, T:0.41
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTAAATCCTAGCAAAACTCT
Found at i:70358 original size:106 final size:106
Alignment explanation
Indices: 70174--71224 Score: 1593
Period size: 106 Copynumber: 9.9 Consensus size: 106
70164 GCATTGTTCT
* * * * *
70174 GAGTCCAATATCCTCCG-TCGTGAAGTTAAAATTGGCTCTGGAACTGGGAAGTTATTTATTGACA
1 GAGTCCAATATCCTTCGCT-GTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACA
** *
70238 ACCAGTAGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
65 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
70280 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
*
70345 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
70386 GAGTCAAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATTGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
* * * * *
70451 CCAACGGTCCCTTCATCGCGAAGTTAAACTTGCATTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
70492 GAGTCCAATATCCTTCGTTGTGAAGTTGGAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
70557 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
70598 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
* *
70663 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * * *
70704 GAGTCCAATAGCCTTCGTTGTGAAGTTGAAATTGACTCTAAAATTGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
* * * *
70769 CCAGCTGTCCCTTCATCGCGAAGTTGAACTTGCATTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
70810 GAGTCCAATATCCTTCGTTGTGAAGTT-AGAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGA-AATTGGCTCTGAAATTGGGAAGTTGTTTATTGACA
*
70874 ACCAACGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
65 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
70916 GAGTCCAATATCCTTCGATGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTAACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
* *
70981 CTAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
71022 GAGTCCAATATCCTTTGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
* *
71087 CCAGTGGTCCCTTCTTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
71128 GAGTCCAATATCCTTCACTGTGAAGTTGAAATTAGCTATGAAATTGGGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
** *
71193 CCAGCCATCCCTTCGTTGTGAAGTTGAACTTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTG
71225 TGTTATCTCG
Statistics
Matches: 862, Mismatches: 80, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
105 1 0.00
106 859 1.00
107 2 0.00
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (106 bp):
GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:72855 original size:16 final size:16
Alignment explanation
Indices: 72834--72902 Score: 59
Period size: 16 Copynumber: 4.1 Consensus size: 16
72824 TTTTGTCCCC
72834 TTTTC-TTTTTTATTT
1 TTTTCTTTTTTTATTT
*
72849 TTATTCTTTCTTTTTTGTT
1 TT-TTCTTT-TTTTAT-TT
** *
72868 TTCTTCTTTTTTGCTTC
1 TT-TTCTTTTTTTATTT
72885 TTTTCTTTTTTTATTT
1 TTTTCTTTTTTTATTT
72901 TT
1 TT
72903 GTCCTTTTTG
Statistics
Matches: 42, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
15 2 0.05
16 16 0.38
17 5 0.12
18 9 0.21
19 10 0.24
ACGTcount: A:0.04, C:0.12, G:0.03, T:0.81
Consensus pattern (16 bp):
TTTTCTTTTTTTATTT
Found at i:72862 original size:19 final size:20
Alignment explanation
Indices: 72835--72876 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 20
72825 TTTGTCCCCT
72835 TTTCTTTTTTAT-TTTTATTC
1 TTTCTTTTTT-TGTTTTATTC
*
72855 TTTC-TTTTTTGTTTTCTTC
1 TTTCTTTTTTTGTTTTATTC
72874 TTT
1 TTT
72877 TTTGCTTCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 15 0.75
20 4 0.20
ACGTcount: A:0.05, C:0.12, G:0.02, T:0.81
Consensus pattern (20 bp):
TTTCTTTTTTTGTTTTATTC
Found at i:76285 original size:18 final size:19
Alignment explanation
Indices: 76262--76297 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
76252 TGCTGATGAT
76262 GGAAAAAAAT-AAAAGAGA
1 GGAAAAAAATGAAAAGAGA
76280 GGAAAAAAATGAAAAGAG
1 GGAAAAAAATGAAAAGAG
76298 TTAGTAAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.69, C:0.00, G:0.25, T:0.06
Consensus pattern (19 bp):
GGAAAAAAATGAAAAGAGA
Found at i:77439 original size:20 final size:19
Alignment explanation
Indices: 77407--77444 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
77397 TGGATGAAAC
77407 GAATATAAAAAAATGAAATT
1 GAATATAAAAAAAT-AAATT
77427 GAATA-AAATAAAATAAAT
1 GAATATAAA-AAAATAAAT
77445 GAAGAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (19 bp):
GAATATAAAAAAATAAATT
Found at i:77572 original size:22 final size:22
Alignment explanation
Indices: 77547--77593 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 22
77537 AACATAATGA
77547 AAATAAATAA-ATAGTAAAAAT-T
1 AAATAAA-AATATA-TAAAAATAT
77569 AAATAAAAATATATAAAAATAT
1 AAATAAAAATATATAAAAATAT
77591 AAA
1 AAA
77594 AATGTATGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 9 0.39
22 14 0.61
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (22 bp):
AAATAAAAATATATAAAAATAT
Found at i:80062 original size:81 final size:81
Alignment explanation
Indices: 79797--80197 Score: 493
Period size: 81 Copynumber: 5.0 Consensus size: 81
79787 TATAATTCCT
* * * * * * * *
79797 TTATTCTTTTACTTCAA-AGTATTTAGCTTTTCATTTAACTTGCATATTTGACACTTTTCTGTCA
1 TTATTCTTTTAC-TCAATGGTATTTAACTGTTCATCTAACTGGCATAATTGACACCTTTCTGCCA
* * ** ** *
79861 AATACACAACTAATCGA
65 ATTGCACAGTTAGGCTA
*** * * *
79878 TTATT-TTTTACTCAACAATGTTTAACTGTTCACCTAACTGGCATAATTGACACTTTTCTG-CAA
1 TTATTCTTTTACTCAATGGTATTTAACTGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAA
79941 TTGCACAGTTAGGCTA
66 TTGCACAGTTAGGCTA
* * *
79957 ATATTCTTTTACTCAATGGTATTTAACTGTTTATCTAACTGTCATAATTGACACCTTTCTGCCAA
1 TTATTCTTTTACTCAATGGTATTTAACTGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAA
*
80022 TTGCACAGTTAGACTA
66 TTGCACAGTTAGGCTA
* * **
80038 TTATTCTTTTACTCAATGGCATTTAACCGTTTTTCTAACTGGCATAATTGACACCTTTCTGCCAA
1 TTATTCTTTTACTCAATGGTATTTAACTGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAA
*
80103 TTGCAAAGTTAGGCTA
66 TTGCACAGTTAGGCTA
*
80119 TTATTCTTTTACTCAATGGTATTTAATTGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAA
1 TTATTCTTTTACTCAATGGTATTTAACTGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAA
80184 TTGCACAGTTAGGC
66 TTGCACAGTTAGGC
80198 CTCAAAGGCA
Statistics
Matches: 279, Mismatches: 38, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
79 20 0.07
80 89 0.32
81 170 0.61
ACGTcount: A:0.27, C:0.20, G:0.12, T:0.41
Consensus pattern (81 bp):
TTATTCTTTTACTCAATGGTATTTAACTGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAA
TTGCACAGTTAGGCTA
Found at i:80239 original size:68 final size:68
Alignment explanation
Indices: 80148--80333 Score: 309
Period size: 68 Copynumber: 2.7 Consensus size: 68
80138 TATTTAATTG
* * *
80148 TTCATCTAACTGGCATAATTGACACCTTTCTGCCAATTGCACAGTTAGGCCTCAAAGGCACTTAG
1 TTCATCTAACTGGCATAAATGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAG
80213 CCT
66 CCT
* * *
80216 TTTATCTAACTGGCATAAATGACACATTTCTGTCAAATGCACAGTTAGGCTTCAAAGGCACTTAG
1 TTCATCTAACTGGCATAAATGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAG
80281 CCT
66 CCT
*
80284 TTCATCTAACTGGCATAAATGACACCTTTCTGTCAAATGCACAATTAGGC
1 TTCATCTAACTGGCATAAATGACACCTTTCTGTCAAATGCACAGTTAGGC
80334 AATTATTCTT
Statistics
Matches: 109, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
68 109 1.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (68 bp):
TTCATCTAACTGGCATAAATGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAG
CCT
Found at i:80427 original size:81 final size:81
Alignment explanation
Indices: 80284--80495 Score: 264
Period size: 81 Copynumber: 2.6 Consensus size: 81
80274 CACTTAGCCT
* * * * *
80284 TTCATCTAACTGGCATAAATGACACCTTTCTG-TCAAATGCACAATTAGGCAATTATTCTTTTAC
1 TTCATCTAACTGGCATAATTGACACCTTTCTGCT-AATTGCACAGTTAGGCAATTACTATTTTAC
*
80348 TCAACGGTATTTAACCG
65 TCAACGATATTTAACCG
* ** *
80365 TTCATCTAACTGGCATAATTGACATCTTTCTGCTAATTATACAGTTAGGCTATTACTATTTTACT
1 TTCATCTAACTGGCATAATTGACACCTTTCTGCTAATTGCACAGTTAGGCAATTACTATTTTACT
80430 CAACGATATTTAACCG
66 CAACGATATTTAACCG
* * * * * *
80446 TTAATATAATTGACATAATTGACACCTTTCTACCAATTGCACAGTTAGGC
1 TTCATCTAACTGGCATAATTGACACCTTTCTGCTAATTGCACAGTTAGGC
80496 CTCAAAGGCA
Statistics
Matches: 111, Mismatches: 19, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 110 0.99
82 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.36
Consensus pattern (81 bp):
TTCATCTAACTGGCATAATTGACACCTTTCTGCTAATTGCACAGTTAGGCAATTACTATTTTACT
CAACGATATTTAACCG
Found at i:80532 original size:298 final size:296
Alignment explanation
Indices: 79989--80697 Score: 1103
Period size: 298 Copynumber: 2.4 Consensus size: 296
79979 TTAACTGTTT
* * * * *
79989 ATCTAACTGTCATAATTGACACCTTTCTGCCAATTGCACAGTTAGACTATTATTCTTTTACTCAA
1 ATCTAACTGGCATAAATGACACCTTTCTGTCAAATGCACAGTTAGGCTATTATTCTTTTACTCAA
* * ** * *
80054 TGGCATTTAACCGTTTTTCTAACTGGCATAATTGACACCTTTCTGCCAATTGCAAAGTTAGGCTA
66 CGGTATTTAACCGTTCATCTAACTGGCATAATTGACATCTTTCTGCCAATTACAAAGTTAGGCTA
* * * * ** * * * *
80119 TTATTCTTTTACTCAATGGTATTTAATTGTTCATCTAACTGGCATAATTGACACCTTTCTGCCAA
131 TTACTATTTTACTCAACGATATTTAACCGTTAATATAACTGACATAATTGACACCTTTCTACCAA
* *
80184 TTGCACAGTTAGGCCTCAAAGGCACTTAGCCTTTTATCTAACTGGCATAAATGACACATTTCTGT
196 TTGCACAGTTAGGCCTCAAAGGCACATAGCCTTTTATCTAACTAGCATAAATGACACATTTCTGT
80249 CAAATGCACAGTTAGGCTTCAAAGGCACTTAGCCTTTC
261 CAAATGCA-AGTTAGGC-TCAAAGGCACTTAGCCTTTC
* *
80287 ATCTAACTGGCATAAATGACACCTTTCTGTCAAATGCACAATTAGGCAATTATTCTTTTACTCAA
1 ATCTAACTGGCATAAATGACACCTTTCTGTCAAATGCACAGTTAGGCTATTATTCTTTTACTCAA
* * *
80352 CGGTATTTAACCGTTCATCTAACTGGCATAATTGACATCTTTCTGCTAATTATACAGTTAGGCTA
66 CGGTATTTAACCGTTCATCTAACTGGCATAATTGACATCTTTCTGCCAATTACAAAGTTAGGCTA
*
80417 TTACTATTTTACTCAACGATATTTAACCGTTAATATAATTGACATAATTGACACCTTTCTACCAA
131 TTACTATTTTACTCAACGATATTTAACCGTTAATATAACTGACATAATTGACACCTTTCTACCAA
* *
80482 TTGCACAGTTAGGCCTCAAAGGCACATAGTCTTTTATCTAACTAGCATAAATGACACCTTTCTGT
196 TTGCACAGTTAGGCCTCAAAGGCACATAGCCTTTTATCTAACTAGCATAAATGACACATTTCTGT
80547 CAAATGCAAGTTAGGCTCAAAGGCACTTAGCCTTTC
261 CAAATGCAAGTTAGGCTCAAAGGCACTTAGCCTTTC
*
80583 ATCTAACTAGCATAAATGACACCTTTCTGTCAAATGCACAGTTAGGCTATTATTCTTTTACTCAA
1 ATCTAACTGGCATAAATGACACCTTTCTGTCAAATGCACAGTTAGGCTATTATTCTTTTACTCAA
*
80648 CGGTATTTAACCGTTCATCTAATTGGCATAATTGACATCTTTCTGCCAAT
66 CGGTATTTAACCGTTCATCTAACTGGCATAATTGACATCTTTCTGCCAAT
80698 GCACAGTTAG
Statistics
Matches: 375, Mismatches: 36, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
296 130 0.35
297 8 0.02
298 237 0.63
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.35
Consensus pattern (296 bp):
ATCTAACTGGCATAAATGACACCTTTCTGTCAAATGCACAGTTAGGCTATTATTCTTTTACTCAA
CGGTATTTAACCGTTCATCTAACTGGCATAATTGACATCTTTCTGCCAATTACAAAGTTAGGCTA
TTACTATTTTACTCAACGATATTTAACCGTTAATATAACTGACATAATTGACACCTTTCTACCAA
TTGCACAGTTAGGCCTCAAAGGCACATAGCCTTTTATCTAACTAGCATAAATGACACATTTCTGT
CAAATGCAAGTTAGGCTCAAAGGCACTTAGCCTTTC
Found at i:80588 original size:66 final size:67
Alignment explanation
Indices: 80459--80630 Score: 265
Period size: 66 Copynumber: 2.6 Consensus size: 67
80449 ATATAATTGA
* ** * * *
80459 CATAATTGACACCTTTCTACCAATTGCACAGTTAGGCCTCAAAGGCACATAGTCTTTTATCTAAC
1 CATAAATGACACCTTTCTGTCAAATGCACAGTTAGG-CTCAAAGGCACATAGCCTTTCATCTAAC
80524 TAG
65 TAG
*
80527 CATAAATGACACCTTTCTGTCAAATGCA-AGTTAGGCTCAAAGGCACTTAGCCTTTCATCTAACT
1 CATAAATGACACCTTTCTGTCAAATGCACAGTTAGGCTCAAAGGCACATAGCCTTTCATCTAACT
80591 AG
66 AG
80593 CATAAATGACACCTTTCTGTCAAATGCACAGTTAGGCT
1 CATAAATGACACCTTTCTGTCAAATGCACAGTTAGGCT
80631 ATTATTCTTT
Statistics
Matches: 96, Mismatches: 7, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
66 56 0.58
67 16 0.17
68 24 0.25
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (67 bp):
CATAAATGACACCTTTCTGTCAAATGCACAGTTAGGCTCAAAGGCACATAGCCTTTCATCTAACT
AG
Found at i:80763 original size:148 final size:145
Alignment explanation
Indices: 80517--80787 Score: 427
Period size: 148 Copynumber: 1.8 Consensus size: 145
80507 ATAGTCTTTT
80517 ATCTAACTAGCATAAATGACACCTTTCTGTCAAATGCAAGTTAGGCTCAAAGGCACTTAGCCTTT
1 ATCTAACTAGCATAAATGACACCTTTCTGTCAAATGCAAGTTAGGCTCAAAGGCACTTAGCCTTT
80582 CATCTAACTAGCATAAATGACACCTTTCTGTCAAATGCACAGTTAGGCTATTATTCTTTTACTCA
66 CATCTAACTAGCATAAATGACACCTTTCTGTCAAATGCACAGTT--GCTATTATTCTTTTACTCA
80647 ACGGTATTTAACCGTTC
129 ACGGTATTTAACCGTTC
* * * * * *
80664 ATCTAATTGGCATAATTGACATCTTTCTG-CCAATGCACAGTTAGGCCTCAAAGGCACTTATCCT
1 ATCTAACTAGCATAAATGACACCTTTCTGTCAAATGCA-AGTTAGG-CTCAAAGGCACTTAGCCT
* *
80728 TTCCTCTAACTGGCATAAATGACACCTTTCTGTCAAATGCACAGTTGCTATTATTCTTTT
64 TTCATCTAACTAGCATAAATGACACCTTTCTGTCAAATGCACAGTTGCTATTATTCTTTT
80788 GCTTTAGAGC
Statistics
Matches: 114, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
146 21 0.18
147 32 0.28
148 61 0.54
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.34
Consensus pattern (145 bp):
ATCTAACTAGCATAAATGACACCTTTCTGTCAAATGCAAGTTAGGCTCAAAGGCACTTAGCCTTT
CATCTAACTAGCATAAATGACACCTTTCTGTCAAATGCACAGTTGCTATTATTCTTTTACTCAAC
GGTATTTAACCGTTC
Found at i:81592 original size:20 final size:20
Alignment explanation
Indices: 81567--81619 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 20
81557 TGTTGCCTGT
*
81567 TATCGATACCCTTACCATGG
1 TATCGATACCCATACCATGG
*
81587 TATCGATACTACCATACTATGG
1 TATCGATAC--CCATACCATGG
*
81609 TACCGATACCC
1 TATCGATACCC
81620 CTTCTGGTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
20 11 0.39
22 17 0.61
ACGTcount: A:0.28, C:0.30, G:0.13, T:0.28
Consensus pattern (20 bp):
TATCGATACCCATACCATGG
Found at i:81666 original size:95 final size:95
Alignment explanation
Indices: 81471--81694 Score: 265
Period size: 95 Copynumber: 2.4 Consensus size: 95
81461 AAGCTCAATA
* * * * * * * *
81471 GTATCGGTACCAC-TACCCTGGTACCGATACTTCTATAATGTGGTATCGATACCTCCTTTTGGTA
1 GTATCGATACC-CTTACCATGGTATCGATACTACCATAATATGGTACCGATACCTCCTTCTGGTA
* *
81535 TCGATACCAATTTTAGTTTCGATGTTGCCTG
65 TCGATACCAATTTTAGATTCAATGTTGCCTG
* *
81566 TTATCGATACCCTTACCATGGTATCGATACTACCATACTATGGTACCGATACC-CCTTCTGGTAT
1 GTATCGATACCCTTACCATGGTATCGATACTACCATAATATGGTACCGATACCTCCTTCTGGTAT
* *
81630 TGATACCAATTTTAGATTCAATGTTTTCCTG
66 CGATACCAATTTTAGATTCAATG-TTGCCTG
*
81661 GTATCGATGA-CCTTACCATGGTATCGATGCTACC
1 GTATCGAT-ACCCTTACCATGGTATCGATACTACC
81695 TAGTTGGTAT
Statistics
Matches: 110, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
94 31 0.28
95 78 0.71
96 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (95 bp):
GTATCGATACCCTTACCATGGTATCGATACTACCATAATATGGTACCGATACCTCCTTCTGGTAT
CGATACCAATTTTAGATTCAATGTTGCCTG
Found at i:84443 original size:25 final size:25
Alignment explanation
Indices: 84415--84487 Score: 137
Period size: 25 Copynumber: 2.9 Consensus size: 25
84405 ATAGAAATAT
*
84415 AAGTATTCGAATACGTATCATACCC
1 AAGTATTCGAATAAGTATCATACCC
84440 AAGTATTCGAATAAGTATCATACCC
1 AAGTATTCGAATAAGTATCATACCC
84465 AAGTATTCGAATAAGTATCATAC
1 AAGTATTCGAATAAGTATCATAC
84488 GCAATACTTA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 47 1.00
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.29
Consensus pattern (25 bp):
AAGTATTCGAATAAGTATCATACCC
Found at i:86962 original size:23 final size:23
Alignment explanation
Indices: 86908--86966 Score: 57
Period size: 23 Copynumber: 2.6 Consensus size: 23
86898 AAATTTTTAT
* * *
86908 ATAAAATTAAAAAATAAAATTAT
1 ATAAATTTCAAAAATAAAATTAC
**
86931 ATATTTTTCTAAAAATAAAA-TAC
1 ATAAATTTC-AAAAATAAAATTAC
86954 ATAAATTTCAAAA
1 ATAAATTTCAAAA
86967 TAACCCCTAA
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
22 4 0.14
23 14 0.50
24 10 0.36
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (23 bp):
ATAAATTTCAAAAATAAAATTAC
Found at i:89019 original size:21 final size:21
Alignment explanation
Indices: 88993--89037 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
88983 AAGCAAAATT
88993 GTGCATTGATGCACTGCTATA
1 GTGCATTGATGCACTGCTATA
*
89014 GTGCATTGATGCACTGTTATA
1 GTGCATTGATGCACTGCTATA
89035 GTG
1 GTG
89038 ACTTTCGTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.22, C:0.16, G:0.27, T:0.36
Consensus pattern (21 bp):
GTGCATTGATGCACTGCTATA
Found at i:89822 original size:63 final size:63
Alignment explanation
Indices: 89725--90067 Score: 521
Period size: 63 Copynumber: 5.5 Consensus size: 63
89715 TCGGCAATTG
* * * * * *
89725 TCCATAGGTCCC-AAAGAACCTAGGTAA-ACTGTCCATATGTTCCTTAGAACAAAGGTATACTG
1 TCCATATGTCCCGAAAG-ACATAGGTAATTCTGTCCATATGTTCCGTAGAACATAGGTATACTA
*
89787 TCAATATGTCCCGAAAGACATAGGTAATTCTGTCCATATGTTCCGTAGAACATAGGTATACTA
1 TCCATATGTCCCGAAAGACATAGGTAATTCTGTCCATATGTTCCGTAGAACATAGGTATACTA
* * *
89850 TCCATATGTCCCGAAAGACATAGGTAATTATGTCCATATGTTTCGTAAAACATAGGTATACTA
1 TCCATATGTCCCGAAAGACATAGGTAATTCTGTCCATATGTTCCGTAGAACATAGGTATACTA
*
89913 TCCATATGTCCCGAAAGACATAGGTAATTCTGTCCATATGTTCCGTAGAACATAGGTATACTG
1 TCCATATGTCCCGAAAGACATAGGTAATTCTGTCCATATGTTCCGTAGAACATAGGTATACTA
* *
89976 TCCATATATCCCGAAAGACATAGGTAATTATGTCCATATGTTCCGTAGAACATAGGTATACTA
1 TCCATATGTCCCGAAAGACATAGGTAATTCTGTCCATATGTTCCGTAGAACATAGGTATACTA
* *
90039 TCCATATGTCCC-AAAAAAATAGGTAATTC
1 TCCATATGTCCCGAAAGACATAGGTAATTC
90068 CTCGACTCTT
Statistics
Matches: 257, Mismatches: 22, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
62 33 0.13
63 224 0.87
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (63 bp):
TCCATATGTCCCGAAAGACATAGGTAATTCTGTCCATATGTTCCGTAGAACATAGGTATACTA
Found at i:90350 original size:2 final size:2
Alignment explanation
Indices: 90345--90377 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
90335 TATATATATA
90345 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
90378 TCACTTTCAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:91917 original size:3 final size:3
Alignment explanation
Indices: 91909--91934 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
91899 GAATAGGGTT
91909 TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TT
91935 TTAAGAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:93837 original size:21 final size:21
Alignment explanation
Indices: 93811--93855 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
93801 GATTTCTGGG
* *
93811 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
93832 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
93853 CAA
1 CAA
93856 ACGAACAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:94791 original size:31 final size:31
Alignment explanation
Indices: 94606--94779 Score: 303
Period size: 31 Copynumber: 5.6 Consensus size: 31
94596 AGGGTCGAGG
*
94606 GTTTACCTATGTCCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
94637 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
*
94668 TTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
94699 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
*
94730 GTTTGCCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
* *
94761 GATTACCTAGGTTCTTCGG
1 GTTTACCTATGTTCTTCGG
94780 AATCTATGGA
Statistics
Matches: 136, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 136 1.00
ACGTcount: A:0.18, C:0.20, G:0.23, T:0.39
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:98531 original size:21 final size:21
Alignment explanation
Indices: 98494--98538 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
98484 GATATTTGGG
*
98494 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAATCGATACCCATT
*
98515 CAAGGGGAA-CTGATACCCCTT
1 CAAGGGGAATC-GATACCCATT
98536 CAA
1 CAA
98539 ACGAACAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 20 0.95
ACGTcount: A:0.31, C:0.27, G:0.24, T:0.18
Consensus pattern (21 bp):
CAAGGGGAATCGATACCCATT
Found at i:99329 original size:31 final size:31
Alignment explanation
Indices: 99291--99477 Score: 313
Period size: 31 Copynumber: 6.0 Consensus size: 31
99281 AGGGTCGAGG
*
99291 GTTTACCTATGTCCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
99322 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
99353 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
99384 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
*
99415 GTTTTCCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
* * *
99446 GATTACCTAGGTTCTTCGGAATC-TATGGACT
1 GTTTACCTATGTTCTTCGGGA-CATATGGACT
99477 G
1 G
99478 GTCCTTCGGG
Statistics
Matches: 149, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
31 148 0.99
32 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.23, T:0.38
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:101696 original size:31 final size:31
Alignment explanation
Indices: 101655--102056 Score: 344
Period size: 31 Copynumber: 13.0 Consensus size: 31
101645 AACCTCGGCA
* * *
101655 ACTGTTCATATGTCCCGAAGAACCTAGGTAA
1 ACTGTCCATATGTCCCGAAGAACATAGGTAT
* **
101686 ACTGTCCATATGTTCCTTAGAACATAGGTAT
1 ACTGTCCATATGTCCCGAAGAACATAGGTAT
* *
101717 ACTGTCCATATGTCTC-AAAAGACATAGGTAATT
1 ACTGTCCATATGTCCCGAAGA-ACATAGGT-A-T
* *
101750 A-TGTCCATATGTTCCGTAGAA-ATAGGTAT
1 ACTGTCCATATGTCCCGAAGAACATAGGTAT
101779 ACTGTCCATATGTCCCGAA-AGACATAGGTA-
1 ACTGTCCATATGTCCCGAAGA-ACATAGGTAT
* * *
101809 ATTTGTCCATATGTTCCGTAGAACATAGGTAT
1 A-CTGTCCATATGTCCCGAAGAACATAGGTAT
* *
101841 ATTGTCCATATGTCCTGAA-AGACATAGGTAGTT
1 ACTGTCCATATGTCCCGAAGA-ACATAGGTA--T
* *
101874 A-TGTCCATATGTTCCGTAGAACATAGGTAT
1 ACTGTCCATATGTCCCGAAGAACATAGGTAT
101904 ACTGTCCATATGTCCCGAA-AGAC--AGGTAATT
1 ACTGTCCATATGTCCCGAAGA-ACATAGGT-A-T
* *
101935 A-TGTCCATATGTTCCGTAGAACATAGGTAT
1 ACTGTCCATATGTCCCGAAGAACATAGGTAT
*
101965 ACTGTCCATATGTCCCGAA-ATACATAGTTAAT
1 ACTGTCCATATGTCCCGAAGA-ACATAGGT-AT
* * * * * *
101997 TCTGTCTATTTATTCCGTAGAACATAGGTAT
1 ACTGTCCATATGTCCCGAAGAACATAGGTAT
**
102028 ACTGTCCATATGTCCAAAAG-ACATAGGTA
1 ACTGTCCATATGTCCCGAAGAACATAGGTA
102057 ATTCCTCGAC
Statistics
Matches: 299, Mismatches: 47, Indels: 51
0.75 0.12 0.13
Matches are distributed among these distances:
29 7 0.02
30 54 0.18
31 165 0.55
32 65 0.22
33 8 0.03
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32
Consensus pattern (31 bp):
ACTGTCCATATGTCCCGAAGAACATAGGTAT
Found at i:101876 original size:124 final size:125
Alignment explanation
Indices: 101655--102059 Score: 597
Period size: 124 Copynumber: 3.3 Consensus size: 125
101645 AACCTCGGCA
* * ** *
101655 ACTGTTCATATGTCCCG-AAGAACCTAGGTAAACTGTCCATATGTTCCTTAGAACATAGGTATAC
1 ACTGTCCATATGTCCCGAAAG-ACATAGGTAATTTGTCCATATGTTCCGTAGAACATAGGTATAC
*
101719 TGTCCATATGT-CTCAAAAGACATAGGTAATTATGTCCATATGTTCCGTAGAA-ATAGGTAT
65 TGTCCATATGTCCT-GAAAGACATAGGTAATTATGTCCATATGTTCCGTAGAACATAGGTAT
*
101779 ACTGTCCATATGTCCCGAAAGACATAGGTAATTTGTCCATATGTTCCGTAGAACATAGGTATATT
1 ACTGTCCATATGTCCCGAAAGACATAGGTAATTTGTCCATATGTTCCGTAGAACATAGGTATACT
*
101844 GTCCATATGTCCTGAAAGACATAGGTAGTTATGTCCATATGTTCCGTAGAACATAGGTAT
66 GTCCATATGTCCTGAAAGACATAGGTAATTATGTCCATATGTTCCGTAGAACATAGGTAT
101904 ACTGTCCATATGTCCCGAAAGAC--AGGTAATTATGTCCATATGTTCCGTAGAACATAGGTATAC
1 ACTGTCCATATGTCCCGAAAGACATAGGTAATT-TGTCCATATGTTCCGTAGAACATAGGTATAC
* * * * * * *
101967 TGTCCATATGTCCCGAAATACATAGTTAATTCTGTCTATTTATTCCGTAGAACATAGGTAT
65 TGTCCATATGTCCTGAAAGACATAGGTAATTATGTCCATATGTTCCGTAGAACATAGGTAT
*
102028 ACTGTCCATATGT-CCAAAAGACATAGGTAATT
1 ACTGTCCATATGTCCCGAAAGACATAGGTAATT
102060 CCTCGACTCT
Statistics
Matches: 257, Mismatches: 18, Indels: 11
0.90 0.06 0.04
Matches are distributed among these distances:
123 16 0.06
124 197 0.77
125 44 0.17
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32
Consensus pattern (125 bp):
ACTGTCCATATGTCCCGAAAGACATAGGTAATTTGTCCATATGTTCCGTAGAACATAGGTATACT
GTCCATATGTCCTGAAAGACATAGGTAATTATGTCCATATGTTCCGTAGAACATAGGTAT
Found at i:101903 original size:63 final size:63
Alignment explanation
Indices: 101655--102059 Score: 601
Period size: 63 Copynumber: 6.5 Consensus size: 63
101645 AACCTCGGCA
* * *
101655 ACTGTTCATATGTCCCG-AAGAACCTAGGTAA--ACTGTCCATATGTTCCTTAGAACATAGGTAT
1 ACTGTCCATATGTCCCGAAAG-ACATAGGTAATTA-TGTCCATATGTTCCGTAGAACATAGGTAT
* *
101717 ACTGTCCATATGTCTCAAAAGACATAGGTAATTATGTCCATATGTTCCGTAGAA-ATAGGTAT
1 ACTGTCCATATGTCCCGAAAGACATAGGTAATTATGTCCATATGTTCCGTAGAACATAGGTAT
101779 ACTGTCCATATGTCCCGAAAGACATAGGTAATT-TGTCCATATGTTCCGTAGAACATAGGTAT
1 ACTGTCCATATGTCCCGAAAGACATAGGTAATTATGTCCATATGTTCCGTAGAACATAGGTAT
* * *
101841 ATTGTCCATATGTCCTGAAAGACATAGGTAGTTATGTCCATATGTTCCGTAGAACATAGGTAT
1 ACTGTCCATATGTCCCGAAAGACATAGGTAATTATGTCCATATGTTCCGTAGAACATAGGTAT
101904 ACTGTCCATATGTCCCGAAAGAC--AGGTAATTATGTCCATATGTTCCGTAGAACATAGGTAT
1 ACTGTCCATATGTCCCGAAAGACATAGGTAATTATGTCCATATGTTCCGTAGAACATAGGTAT
* * * * * *
101965 ACTGTCCATATGTCCCGAAATACATAGTTAATTCTGTCTATTTATTCCGTAGAACATAGGTAT
1 ACTGTCCATATGTCCCGAAAGACATAGGTAATTATGTCCATATGTTCCGTAGAACATAGGTAT
*
102028 ACTGTCCATATGT-CCAAAAGACATAGGTAATT
1 ACTGTCCATATGTCCCGAAAGACATAGGTAATT
102060 CCTCGACTCT
Statistics
Matches: 314, Mismatches: 22, Indels: 14
0.90 0.06 0.04
Matches are distributed among these distances:
61 79 0.25
62 116 0.37
63 118 0.38
64 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32
Consensus pattern (63 bp):
ACTGTCCATATGTCCCGAAAGACATAGGTAATTATGTCCATATGTTCCGTAGAACATAGGTAT
Found at i:101940 original size:155 final size:155
Alignment explanation
Indices: 101655--102059 Score: 404
Period size: 155 Copynumber: 2.6 Consensus size: 155
101645 AACCTCGGCA
* * * *
101655 ACTGTTCATATGTCCCGAAGAACCTAGGTAAACTGTCCATATGTTCCTTAGAACATAGGTATACT
1 ACTGTCCATATGTCCCGAAGAACATAGGTAAACTGTCCATATGTTCCTGAAAACATAGGTATACT
* *
101720 GTCCATATGTCTCAAAAGACATAGGTAATTATGTCCATATGTTCCGTAGAAATAGGTATACTGTC
66 GTCCATATGTCTCAAAAGACATAGGTAATTATGTCCATATGTCCCGTAGAAACAGGTATACTGTC
101785 CATATGTCCCGAA-AGACATAGGTA-
131 CATATGTCCCGAAGA-ACATAGGTAT
* * * * *
101809 ATTTGTCCATATGTTCCGTAGAACATAGGTATATTGTCCATATG-TCCTGAAAGACATAGGTAGT
1 A-CTGTCCATATGTCCCGAAGAACATAGGTAAACTGTCCATATGTTCCTGAAA-ACATAGGTA--
***
101873 TA-TGTCCATATGT-TCCGTAGAACATAGGT-A-TACTGTCCATATGTCCCG-A-AAGACAGGTA
62 TACTGTCCATATGTCTCAAAAG-ACATAGGTAATTA-TGTCCATATGTCCCGTAGAA-ACAGGT-
* *
101932 ATTA-TGTCCATATGTTCCGTAGAACATAGGTAT
123 A-TACTGTCCATATGTCCCGAAGAACATAGGTAT
* * * * * *
101965 ACTGTCCATATGTCCCGAA-ATACATAGTTAATTCTGTCTATTTATTCC-GTAGAACATAGGTAT
1 ACTGTCCATATGTCCCGAAGA-ACATAGGTAA-ACTGTCCATATGTTCCTG-AAAACATAGGTAT
102028 ACTGTCCATATGTC-CAAAAGACATAGGTAATT
63 ACTGTCCATATGTCTCAAAAGACATAGGTAATT
102060 CCTCGACTCT
Statistics
Matches: 202, Mismatches: 30, Indels: 36
0.75 0.11 0.13
Matches are distributed among these distances:
153 2 0.01
154 26 0.13
155 126 0.62
156 41 0.20
157 7 0.03
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32
Consensus pattern (155 bp):
ACTGTCCATATGTCCCGAAGAACATAGGTAAACTGTCCATATGTTCCTGAAAACATAGGTATACT
GTCCATATGTCTCAAAAGACATAGGTAATTATGTCCATATGTCCCGTAGAAACAGGTATACTGTC
CATATGTCCCGAAGAACATAGGTAT
Found at i:102271 original size:20 final size:20
Alignment explanation
Indices: 102246--102283 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
102236 TTTTATTTCC
*
102246 TATCTTCTTGTCATGTATCA
1 TATCTTCTTATCATGTATCA
102266 TATCTTCTTATCATGTAT
1 TATCTTCTTATCATGTAT
102284 TTCATGTCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.18, G:0.08, T:0.53
Consensus pattern (20 bp):
TATCTTCTTATCATGTATCA
Found at i:104467 original size:2 final size:2
Alignment explanation
Indices: 104460--104484 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
104450 TCCTCATTTC
104460 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
104485 ATAGGTAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:107105 original size:2 final size:2
Alignment explanation
Indices: 107098--107150 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
107088 TGAATTGTAT
107098 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
107140 TA TA TA TA TA T
1 TA TA TA TA TA T
107151 TGGCACCCGT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:108419 original size:59 final size:58
Alignment explanation
Indices: 108295--108426 Score: 151
Period size: 60 Copynumber: 2.2 Consensus size: 58
108285 GTCAGATAAT
* * * * *
108295 CATTTGTAACTTTTAATTGTCGGGGGCTTAATAAAATAGCGCTCTATAGTCGAGCGAC
1 CATTTGTAACTTTTAATTATCGGGGACTCAATAAAATAGCACTCCATAGTCGAGCGAC
*
108353 CATTTTGTAACTTTTAATTATCGGAGGACTCAATAAAGTTA-CACTCCATAGTCGGAG-GAC
1 CA-TTTGTAACTTTTAATTATCGG-GGACTCAATAAA-ATAGCACTCCATAGTC-GAGCGAC
108413 CATTTGTATACTTT
1 CATTTGTA-ACTTT
108427 AACCAAAATA
Statistics
Matches: 63, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
58 2 0.03
59 26 0.41
60 30 0.48
61 5 0.08
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (58 bp):
CATTTGTAACTTTTAATTATCGGGGACTCAATAAAATAGCACTCCATAGTCGAGCGAC
Found at i:129405 original size:44 final size:44
Alignment explanation
Indices: 129349--129437 Score: 144
Period size: 44 Copynumber: 2.0 Consensus size: 44
129339 AGGCTTGTAG
129349 AATACTTACTACATAATTTCCAGACCC-TACATAATTTTTCTATA
1 AATACTTACTACATAATTTCCAG-CCCATACATAATTTTTCTATA
* *
129393 AATACTTCCTACATCATTTCCAGCCCATACATAATTTTTCTATA
1 AATACTTACTACATAATTTCCAGCCCATACATAATTTTTCTATA
129437 A
1 A
129438 TTTTTCTCAT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
43 3 0.07
44 39 0.93
ACGTcount: A:0.35, C:0.25, G:0.02, T:0.38
Consensus pattern (44 bp):
AATACTTACTACATAATTTCCAGCCCATACATAATTTTTCTATA
Found at i:142896 original size:42 final size:42
Alignment explanation
Indices: 142832--142943 Score: 179
Period size: 42 Copynumber: 2.7 Consensus size: 42
142822 CTATTATAAA
* *
142832 GCTTTAATTGTTAAAGTCCATGGCTTTGTCTTATTCCATAGT
1 GCTTTAATTATTAAATTCCATGGCTTTGTCTTATTCCATAGT
* *
142874 GCTTTAATTATTAAATTTCATGGCTTTTTCTTATTCCATAGT
1 GCTTTAATTATTAAATTCCATGGCTTTGTCTTATTCCATAGT
*
142916 GCTTTAATTATTAAATTCCATGGATTTG
1 GCTTTAATTATTAAATTCCATGGCTTTG
142944 CCTTCTCCCT
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.24, C:0.14, G:0.13, T:0.48
Consensus pattern (42 bp):
GCTTTAATTATTAAATTCCATGGCTTTGTCTTATTCCATAGT
Found at i:149274 original size:106 final size:106
Alignment explanation
Indices: 149090--150338 Score: 1733
Period size: 106 Copynumber: 11.9 Consensus size: 106
149080 ATATTAAAGA
* * * * *
149090 CAAGTTCAAATTAACAACGAAGGGA-CGACTGGTTGTCAATAAACAACTTCTTAATTTCAGAGCC
1 CAAGTTCAACTTCACGACGAAGGGACCG-CTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCC
* *
149154 AATTTTAACTTCACAACGAAGGATATTGGACTCCAGACAACA
65 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACG
* *
149196 CAAGTTCAACTTCACGACGAAGGGATCGCTAGTTGTCAACAAACAACTTCTCAATTTCAGAGCCA
1 CAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCA
*
149261 ATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACG
66 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACG
* * *
149302 CAAGTTCAACTTCACGATGAAGGGACCGTTGATTGTCAACAAACAACTTCTCAA-TTCAGAGCCA
1 CAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCA
149366 ATTTCAACTTCACAACGAAAGG-TATTGGACTCCA-ACAACG
66 ATTTCAACTTCACAACG-AAGGATATTGGACTCCAGACAACG
* *
149406 CAAGTTCAACTTCATGACGAAGGGACCGCTGGTTGTCAATAAACAA-----C---TTC----CCA
1 CAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCA
149459 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACG
66 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACG
* *
149500 CAAGTTTAACTTCACGACGAAGGGACCACTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCA
1 CAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCA
*
149565 ATTTCAAGTTCACAACGAAGGATATTGGACTCCAGACAACG
66 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACG
* * * * * *
149606 CAAGTTCAACTTCACGACCAGGGGATCGCTGGTTGTCAACAAACAATTTCCCAATTTTAGAGCCA
1 CAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCA
* * * *
149671 ATATCAACTTCA-AAGCGAATGATATTGGACTCGAGACAATG
66 ATTTCAACTTCACAA-CGAAGGATATTGGACTCCAGACAACG
* * * *
149712 CAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAATTTCGGAGCCA
1 CAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCA
* * *
149777 ATTTCAACTTCACAGCGAAAGATATTGGAATCCAGACAACG
66 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACG
* * * * * *
149818 CAAGTTCAACTTCATGACGAAGGGACCGATGGTTGTCAACAAACAATTTCCCAATTTCGGTGCCA
1 CAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCA
* * * * *
149883 TTTTCAACTTCACATCGAAGGATATTGGACTCTAAACAACA
66 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACG
149924 CAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCA
1 CAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCA
**
149989 ATTTCAACTTCACAACGAAGGATATTAAACTCCAGACAACG
66 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACG
* *
150030 CAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCA
1 CAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCA
* * *
150095 ATTTCAACTTCATAGCGAAGGATATTGGACTCGAGACAACG
66 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACG
*
150136 CAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAA-TTTTCCAATTTCAGAGCC
1 CAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCT-CAATTTCAGAGCC
* * * *
150200 AATTTCAACTTCACAACAAAGGATATTGGACTCGAGACAGCA
65 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACG
* * * * * * *
150242 CAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAATAATTTCCCGATTCCAGAGCCA
1 CAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCA
* *
150307 ATTTCAACTTCACGACGGAGGATATTGGACTC
66 ATTTCAACTTCACAACGAAGGATATTGGACTC
150339 GAAACAATGC
Statistics
Matches: 1024, Mismatches: 99, Indels: 40
0.88 0.09 0.03
Matches are distributed among these distances:
92 4 0.00
93 32 0.03
94 48 0.05
97 3 0.00
99 2 0.00
102 3 0.00
104 47 0.05
105 42 0.04
106 838 0.82
107 5 0.00
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (106 bp):
CAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCA
ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACG
Found at i:152196 original size:42 final size:41
Alignment explanation
Indices: 152150--152257 Score: 153
Period size: 42 Copynumber: 2.6 Consensus size: 41
152140 TTATAAAGCC
*
152150 TTAATTGTTAAAGTCCATGGCTTTGTCTTATTCCATAGTCCT
1 TTAATTATTAAA-TCCATGGCTTTGTCTTATTCCATAGTCCT
* * *
152192 TTAATTATTAAATATCATGGCTTTTTCTTATTCCATAGTGCT
1 TTAATTATTAAAT-CCATGGCTTTGTCTTATTCCATAGTCCT
152234 TTAATTATTAAATTCCATGGCTTT
1 TTAATTATTAAA-TCCATGGCTTT
152258 ACCTTCTCCC
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
41 1 0.02
42 57 0.97
43 1 0.02
ACGTcount: A:0.25, C:0.16, G:0.11, T:0.48
Consensus pattern (41 bp):
TTAATTATTAAATCCATGGCTTTGTCTTATTCCATAGTCCT
Found at i:157250 original size:22 final size:20
Alignment explanation
Indices: 157199--157251 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 20
157189 AAAAACCTTC
*
157199 AGTATCGATACTCTTATGGG
1 AGTATCGATACTCCTATGGG
*
157219 AGTATTGATACTCCTATAGGTG
1 AGTATCGATACTCCTAT-GG-G
*
157241 AGTACCGATAC
1 AGTATCGATAC
157252 AAAAAGTGGC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 15 0.56
21 2 0.07
22 10 0.37
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (20 bp):
AGTATCGATACTCCTATGGG
Found at i:164542 original size:24 final size:23
Alignment explanation
Indices: 164515--164564 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 23
164505 TCTTATATTT
164515 TTTTCTTCTTTTGAGTGCTTGCAA
1 TTTTCTTCTTTTGAGTG-TTGCAA
*
164539 TTTTCTTCTTTTGAGTGTTTCAA
1 TTTTCTTCTTTTGAGTGTTGCAA
164562 TTT
1 TTT
164565 CTTTGCTGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
23 8 0.32
24 17 0.68
ACGTcount: A:0.12, C:0.14, G:0.14, T:0.60
Consensus pattern (23 bp):
TTTTCTTCTTTTGAGTGTTGCAA
Found at i:167252 original size:25 final size:25
Alignment explanation
Indices: 167221--167353 Score: 151
Period size: 25 Copynumber: 5.3 Consensus size: 25
167211 ATGCACTTTA
* *
167221 AAAGTGCCTCGTAGTATTGCACTCG
1 AAAGTGCCTCGTAGGATTACACTCG
* *
167246 AAAGTGCCTCGTAGGCTTACAGTCG
1 AAAGTGCCTCGTAGGATTACACTCG
* * * *
167271 TAAGTACCTCGTAGTATTGCACTCG
1 AAAGTGCCTCGTAGGATTACACTCG
* *
167296 AAAGGGCCTCGTAGGGTTACACTC-
1 AAAGTGCCTCGTAGGATTACACTCG
*
167320 ATAAGTGCCTCGTAGAATTACACTCG
1 A-AAGTGCCTCGTAGGATTACACTCG
167346 AAAGTGCC
1 AAAGTGCC
167354 ATATAAACAA
Statistics
Matches: 87, Mismatches: 19, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
24 1 0.01
25 85 0.98
26 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (25 bp):
AAAGTGCCTCGTAGGATTACACTCG
Found at i:167305 original size:50 final size:50
Alignment explanation
Indices: 167222--167349 Score: 193
Period size: 50 Copynumber: 2.6 Consensus size: 50
167212 TGCACTTTAA
* * *
167222 AAGTGCCTCGTAGTATTGCACTCGAAAGTGCCTCGTAGGCTTACAGTCGT
1 AAGTGCCTCGTAGTATTGCACTCGAAAGGGCCTCGTAGGCTTACACTCAT
* *
167272 AAGTACCTCGTAGTATTGCACTCGAAAGGGCCTCGTAGGGTTACACTCAT
1 AAGTGCCTCGTAGTATTGCACTCGAAAGGGCCTCGTAGGCTTACACTCAT
* *
167322 AAGTGCCTCGTAGAATTACACTCGAAAG
1 AAGTGCCTCGTAGTATTGCACTCGAAAG
167350 TGCCATATAA
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 70 1.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (50 bp):
AAGTGCCTCGTAGTATTGCACTCGAAAGGGCCTCGTAGGCTTACACTCAT
Found at i:172515 original size:44 final size:44
Alignment explanation
Indices: 172467--172819 Score: 508
Period size: 44 Copynumber: 8.0 Consensus size: 44
172457 ATACCATGAG
* * *
172467 TGGCACCTTTATGCCAATAATTCACCATTATGCATTTTCATTTA
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
* **
172511 TGGCACCTTTATGCCAATAATGCATAGTTATGCATTTTCATTTA
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
** * *
172555 TGAAACCTTTCTACCAATAATGCACCGTTATGCATTTTTATTTA
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
* *
172599 TGGTACCTTTCTGCCAGTAATGCACCGTTATGCATTTTCATTTA
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
* * * *
172643 TGGCACATTTCTTCCAGTAATGCACTGTTATGCATTTTCATTTA
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
* *
172687 TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTGTCATTTT
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
* * *
172731 TGGCACTTTTCTGCCAATAATGCATCATTATGCATTTTCATTTA
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
*
172775 TGGCACCTTTATGCCAATAATGCACCGTTATGCATTTTCATTTA
1 TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
172819 T
1 T
172820 TTCAGTAATA
Statistics
Matches: 274, Mismatches: 35, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 274 1.00
ACGTcount: A:0.25, C:0.22, G:0.13, T:0.41
Consensus pattern (44 bp):
TGGCACCTTTCTGCCAATAATGCACCGTTATGCATTTTCATTTA
Found at i:172648 original size:25 final size:25
Alignment explanation
Indices: 172620--172693 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 25
172610 TGCCAGTAAT
172620 GCACCGTTATGCATTTTCATTTATG
1 GCACCGTTATGCATTTTCATTTATG
* * * *
172645 GCA-CATT-T-C--TTCCAGTAAT-
1 GCACCGTTATGCATTTTCATTTATG
*
172664 GCACTGTTATGCATTTTCATTTATG
1 GCACCGTTATGCATTTTCATTTATG
172689 GCACC
1 GCACC
172694 TTTCTGCCAA
Statistics
Matches: 33, Mismatches: 10, Indels: 12
0.60 0.18 0.22
Matches are distributed among these distances:
19 3 0.09
20 9 0.27
21 1 0.03
22 2 0.06
23 1 0.03
24 10 0.30
25 7 0.21
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.41
Consensus pattern (25 bp):
GCACCGTTATGCATTTTCATTTATG
Found at i:179431 original size:44 final size:44
Alignment explanation
Indices: 179376--179816 Score: 584
Period size: 44 Copynumber: 10.0 Consensus size: 44
179366 ATACCATGAG
*
179376 TGGCACCTTTCTGCCAATAATGCACTGTTATGCATTTTCATTTA
1 TGGCACATTTCTGCCAATAATGCACTGTTATGCATTTTCATTTA
*
179420 TGGCATATTTCTGCCAATAATGCACTGTTATGCATTTTCATTTA
1 TGGCACATTTCTGCCAATAATGCACTGTTATGCATTTTCATTTA
* *
179464 TGGCACATTTCTGCGAATAATGCACCGTTATGCATTTTCATTTA
1 TGGCACATTTCTGCCAATAATGCACTGTTATGCATTTTCATTTA
* * *
179508 TTGTATC-TTTCTGCCAATAATGCA-TCATTATGCATTTTCATTTA
1 TGGCA-CATTTCTGCCAATAATGCACT-GTTATGCATTTTCATTTA
* **
179552 TTGCACCCTTCTGCCAATAATGCACTGTTATGCATTTTCATTTA
1 TGGCACATTTCTGCCAATAATGCACTGTTATGCATTTTCATTTA
* * **
179596 TGGCACATTTCTTCCAGTAATGCACAATTACT-CATTTTCATTTA
1 TGGCACATTTCTGCCAATAATGCACTGTTA-TGCATTTTCATTTA
* * ** * *
179640 TGGCACCTATCTTTCAATAATGCA-TCGTTATGTATTTTTATTTA
1 TGGCACATTTCTGCCAATAATGCACT-GTTATGCATTTTCATTTA
*
179684 TGGCACATTTCTGTCAATAATGCACTGTTATGCATTTTCATTTA
1 TGGCACATTTCTGCCAATAATGCACTGTTATGCATTTTCATTTA
* *
179728 TGGCACATTTTTTCCAATAATGCACTGTTATGCATTTTCATTTA
1 TGGCACATTTCTGCCAATAATGCACTGTTATGCATTTTCATTTA
* **
179772 TGGCACCTTTCTGCCAATAATGCACCATTATGCATTTTCATTTA
1 TGGCACATTTCTGCCAATAATGCACTGTTATGCATTTTCATTTA
179816 T
1 T
179817 TTCGGTAACA
Statistics
Matches: 348, Mismatches: 41, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
43 2 0.01
44 342 0.98
45 4 0.01
ACGTcount: A:0.25, C:0.20, G:0.12, T:0.43
Consensus pattern (44 bp):
TGGCACATTTCTGCCAATAATGCACTGTTATGCATTTTCATTTA
Found at i:179619 original size:132 final size:132
Alignment explanation
Indices: 179376--179816 Score: 643
Period size: 132 Copynumber: 3.3 Consensus size: 132
179366 ATACCATGAG
* *
179376 TGGCACCTTTCTGCCAATAATGCA-CTGTTATGCATTTTCATTTATGGCATATTTCTGCCAATAA
1 TGGCACCTTTCTGCCAATAATGCATC-ATTATGCATTTTCATTTATGGCACATTTCTGCCAATAA
* * *
179440 TGCACTGTTATGCATTTTCATTTATGGCACATTTCTGCGAATAATGCACCGTTATGCATTTTCAT
65 TGCACTGTTATGCATTTTCATTTATGGCACATTTCTTCCAATAATGCACAGTTATGCATTTTCAT
179505 TTA
130 TTA
* * * * **
179508 TTGTATCTTTCTGCCAATAATGCATCATTATGCATTTTCATTTATTGCACCCTTCTGCCAATAAT
1 TGGCACCTTTCTGCCAATAATGCATCATTATGCATTTTCATTTATGGCACATTTCTGCCAATAAT
* *
179573 GCACTGTTATGCATTTTCATTTATGGCACATTTCTTCCAGTAATGCACAATTACT-CATTTTCAT
66 GCACTGTTATGCATTTTCATTTATGGCACATTTCTTCCAATAATGCACAGTTA-TGCATTTTCAT
179637 TTA
130 TTA
* ** * * * *
179640 TGGCACCTATCTTTCAATAATGCATCGTTATGTATTTTTATTTATGGCACATTTCTGTCAATAAT
1 TGGCACCTTTCTGCCAATAATGCATCATTATGCATTTTCATTTATGGCACATTTCTGCCAATAAT
* *
179705 GCACTGTTATGCATTTTCATTTATGGCACATTTTTTCCAATAATGCACTGTTATGCATTTTCATT
66 GCACTGTTATGCATTTTCATTTATGGCACATTTCTTCCAATAATGCACAGTTATGCATTTTCATT
179770 TA
131 TA
*
179772 TGGCACCTTTCTGCCAATAATGCACCATTATGCATTTTCATTTAT
1 TGGCACCTTTCTGCCAATAATGCATCATTATGCATTTTCATTTAT
179817 TTCGGTAACA
Statistics
Matches: 269, Mismatches: 37, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
131 1 0.00
132 266 0.99
133 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.12, T:0.43
Consensus pattern (132 bp):
TGGCACCTTTCTGCCAATAATGCATCATTATGCATTTTCATTTATGGCACATTTCTGCCAATAAT
GCACTGTTATGCATTTTCATTTATGGCACATTTCTTCCAATAATGCACAGTTATGCATTTTCATT
TA
Found at i:179777 original size:25 final size:25
Alignment explanation
Indices: 179705--179777 Score: 68
Period size: 20 Copynumber: 3.2 Consensus size: 25
179695 TGTCAATAAT
179705 GCACTGTTATGCATTTTCATTTATG
1 GCACTGTTATGCATTTTCATTTATG
* * * *
179730 GCAC-ATT-T---TTTCCAATAAT-
1 GCACTGTTATGCATTTTCATTTATG
179749 GCACTGTTATGCATTTTCATTTATG
1 GCACTGTTATGCATTTTCATTTATG
179774 GCAC
1 GCAC
179778 CTTTCTGCCA
Statistics
Matches: 34, Mismatches: 8, Indels: 12
0.63 0.15 0.22
Matches are distributed among these distances:
19 4 0.12
20 10 0.29
21 1 0.03
23 1 0.03
24 10 0.29
25 8 0.24
ACGTcount: A:0.23, C:0.19, G:0.14, T:0.44
Consensus pattern (25 bp):
GCACTGTTATGCATTTTCATTTATG
Found at i:181883 original size:27 final size:28
Alignment explanation
Indices: 181842--181898 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 28
181832 TTGTTTAAAC
* * *
181842 TTGCTTTTGATTTTG-TCTATTGCTTGA
1 TTGCTCTTGAATTTGATCAATTGCTTGA
181869 TTGCTCTTGAATTTGATCAATTGCTTGA
1 TTGCTCTTGAATTTGATCAATTGCTTGA
181897 TT
1 TT
181899 TTGATTCGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 13 0.50
28 13 0.50
ACGTcount: A:0.16, C:0.12, G:0.18, T:0.54
Consensus pattern (28 bp):
TTGCTCTTGAATTTGATCAATTGCTTGA
Found at i:194337 original size:21 final size:23
Alignment explanation
Indices: 194313--194363 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 23
194303 ATGAATCAAA
*
194313 AAATAGCA-CACAAAAGAAAA-C
1 AAATAGCAGCACAAAAAAAAATC
**
194334 AAAT-GCAGTGCAAAAAAAAATC
1 AAATAGCAGCACAAAAAAAAATC
194356 AAATAGCA
1 AAATAGCA
194364 AAAAAAAGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
20 3 0.12
21 13 0.54
22 5 0.21
23 3 0.12
ACGTcount: A:0.63, C:0.16, G:0.12, T:0.10
Consensus pattern (23 bp):
AAATAGCAGCACAAAAAAAAATC
Found at i:198559 original size:15 final size:15
Alignment explanation
Indices: 198539--198568 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
198529 ATCATCAAAG
198539 GAAGAAACAAAAGAT
1 GAAGAAACAAAAGAT
*
198554 GAAGAAACGAAAGAT
1 GAAGAAACAAAAGAT
198569 CCTCTCGAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.07, G:0.23, T:0.07
Consensus pattern (15 bp):
GAAGAAACAAAAGAT
Found at i:200609 original size:23 final size:22
Alignment explanation
Indices: 200538--200618 Score: 92
Period size: 23 Copynumber: 3.6 Consensus size: 22
200528 TACACTACCT
**
200538 TGTGCATATATGCATCCCTTGAA
1 TGTGCATCGATGCAT-CCTTGAA
* *
200561 TGTGCATCGATTCA-CCATGAA
1 TGTGCATCGATGCATCCTTGAA
*
200582 GGTGCATCGATGCATGCCTTGAA
1 TGTGCATCGATGCAT-CCTTGAA
200605 TGTGCATCGATGCA
1 TGTGCATCGATGCA
200619 CTCTGCTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
21 18 0.38
23 30 0.62
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (22 bp):
TGTGCATCGATGCATCCTTGAA
Found at i:204390 original size:24 final size:25
Alignment explanation
Indices: 204362--204415 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
204352 ATTATGGGAG
204362 TTATCTTTTGC-AATTTAGTAGGAA
1 TTATCTTTTGCTAATTTAGTAGGAA
* **
204386 TTATC-TTTGCTATTTTTTTAGGAA
1 TTATCTTTTGCTAATTTAGTAGGAA
204410 TTATCT
1 TTATCT
204416 CTTAGGATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
23 5 0.20
24 20 0.80
ACGTcount: A:0.24, C:0.09, G:0.13, T:0.54
Consensus pattern (25 bp):
TTATCTTTTGCTAATTTAGTAGGAA
Found at i:205934 original size:15 final size:15
Alignment explanation
Indices: 205914--205943 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
205904 ATTTTCCCAT
*
205914 TTTCATATTCTTTTC
1 TTTCATATACTTTTC
205929 TTTCATATACTTTTC
1 TTTCATATACTTTTC
205944 ATAACTTTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.20, G:0.00, T:0.63
Consensus pattern (15 bp):
TTTCATATACTTTTC
Found at i:206514 original size:174 final size:174
Alignment explanation
Indices: 206224--206572 Score: 655
Period size: 174 Copynumber: 2.0 Consensus size: 174
206214 GGGTTTTCAG
206224 ATCATATTATTTTCAATTAAAGATCACTATTTTCTAAATCAGATTATTTTCCATTCATCATCATA
1 ATCATATTATTTTCAATTAAAGATCACTATTTTCTAAATCAGATTATTTTCCATTCATCATCATA
*
206289 TAAATCTTAACTTGGGCAGTTTATACCCAAAAATAATTTAGATAATATTTCTAAAATCATTAAAG
66 TAAATCTTAACTTGGGCAGTTTATACCCAAAAATAATTCAGATAATATTTCTAAAATCATTAAAG
206354 AAATATTTCATCATTAAAATTTCATATCATTCCTTAATTATTTT
131 AAATATTTCATCATTAAAATTTCATATCATTCCTTAATTATTTT
*
206398 ATCATATTATTTTCAATTAAATATCAAC-ATTTTCTAAATCAGATTATTTTCCATTCATCATCAT
1 ATCATATTATTTTCAATTAAAGATC-ACTATTTTCTAAATCAGATTATTTTCCATTCATCATCAT
*
206462 ATAAATCTTAACTTGGGCAGTTTATACCCTAAAATAATTCAGATAATATTTCTAAAATCATTAAA
65 ATAAATCTTAACTTGGGCAGTTTATACCCAAAAATAATTCAGATAATATTTCTAAAATCATTAAA
206527 GAAATATTTCATCATTAAAATTTCATATCATTCCTTAATTATTTT
130 GAAATATTTCATCATTAAAATTTCATATCATTCCTTAATTATTTT
206572 A
1 A
206573 GAAAATTCAT
Statistics
Matches: 171, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
174 169 0.99
175 2 0.01
ACGTcount: A:0.39, C:0.15, G:0.04, T:0.42
Consensus pattern (174 bp):
ATCATATTATTTTCAATTAAAGATCACTATTTTCTAAATCAGATTATTTTCCATTCATCATCATA
TAAATCTTAACTTGGGCAGTTTATACCCAAAAATAATTCAGATAATATTTCTAAAATCATTAAAG
AAATATTTCATCATTAAAATTTCATATCATTCCTTAATTATTTT
Found at i:208732 original size:30 final size:30
Alignment explanation
Indices: 208698--208763 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 30
208688 AAAATACATT
* *
208698 TTTGGTCCCTT-AACTTTTTAAAACTTATAC
1 TTTGGTCCCTTAAAC-TTTCAAAACTTACAC
* *
208728 TTTGG-CCTTTAAACTTTCAAAACTTACAT
1 TTTGGTCCCTTAAACTTTCAAAACTTACAC
208757 TTTGGTC
1 TTTGGTC
208764 ATTACCCAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
29 21 0.70
30 9 0.30
ACGTcount: A:0.26, C:0.20, G:0.09, T:0.45
Consensus pattern (30 bp):
TTTGGTCCCTTAAACTTTCAAAACTTACAC
Found at i:213059 original size:22 final size:20
Alignment explanation
Indices: 213014--213065 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
213004 AAACCTTCAA
* *
213014 TATCGATAATCTTATGGGAG
1 TATCGATACTCCTATGGGAG
213034 TATCGATACTCCTATAGGAGAG
1 TATCGATACTCCTAT-GG-GAG
213056 TATCGATACT
1 TATCGATACT
213066 ACCTCGAGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 13 0.46
21 2 0.07
22 13 0.46
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (20 bp):
TATCGATACTCCTATGGGAG
Found at i:221066 original size:26 final size:26
Alignment explanation
Indices: 221028--221082 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
221018 AGCATGGTTT
221028 AACATCATCGAACCATAAATAGATTG
1 AACATCATCGAACCATAAATAGATTG
* *
221054 AACATCATTGAACCATAAATAGGTTG
1 AACATCATCGAACCATAAATAGATTG
221080 AAC
1 AAC
221083 CGCTCCTCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.45, C:0.18, G:0.13, T:0.24
Consensus pattern (26 bp):
AACATCATCGAACCATAAATAGATTG
Found at i:228601 original size:21 final size:21
Alignment explanation
Indices: 228577--228616 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
228567 AAAATTTTTC
228577 GAGAAAAACTATCTCGAGTGA
1 GAGAAAAACTATCTCGAGTGA
* *
228598 GAGAAAAATTGTCTCGAGT
1 GAGAAAAACTATCTCGAGT
228617 AATAAAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.12, G:0.25, T:0.23
Consensus pattern (21 bp):
GAGAAAAACTATCTCGAGTGA
Found at i:229088 original size:34 final size:34
Alignment explanation
Indices: 229048--229431 Score: 124
Period size: 34 Copynumber: 11.0 Consensus size: 34
229038 GAGAAAGAGT
229048 TTTCAAGAAAATATCTCAAGTGAGATAAAATTTA
1 TTTCAAGAAAATATCTCAAGTGAGATAAAATTTA
* ** *
229082 TTTCAAGAGAAACTATTTTGAGTGAGACAAAA-TT-
1 TTTCAAGA-AAA-TATCTCAAGTGAGATAAAATTTA
* * * *
229116 TTTCAAGGGAAATATCTCAAGAT-AGATGCAACTTTG
1 TTTCAA-GAAAATATCTCAAG-TGAGAT-AAAATTTA
** * * * *
229152 TTTCGAGAGAAGCTGTCTCGAGTGAAATGAAA-TT-
1 TTTC-A-AGAAAATATCTCAAGTGAGATAAAATTTA
* * * ***
229186 TTTCACGAGAAGATATCTCGAGTGTGATAAAAAAAA
1 TTTCA--AGAAAATATCTCAAGTGAGATAAAATTTA
* * * **
229222 ATTCTAGAAAACTATCTCAAGTGAGACAAAATTGG
1 TTTCAAGAAAA-TATCTCAAGTGAGATAAAATTTA
* * * *
229257 TTTTAAGGAAAACTATCTCGAGCGAGATAAAACTCTA
1 TTTCAA-GAAAA-TATCTCAAGTGAGATAAAA-TTTA
* * * *
229294 TTTTCAGAGAAACTGTCTCAAGCGAGACAAAA---A
1 -TTTCA-AGAAAATATCTCAAGTGAGATAAAATTTA
* * *
229327 TTTCCAAGGAAAAATATCTCAAGTGAGATGAATTTTT
1 TTT-CAA-G-AAAATATCTCAAGTGAGATAAAATTTA
* * **
229364 TTTGAGAGAAAATGTCTTGAGTGAGATGAAAA---A
1 TTTCA-AGAAAATATCTCAAGTGAGAT-AAAATTTA
*
229397 TTTCAAGAGAAAATATCTCAAGTGAGATGAAATTT
1 TTTC-A-AGAAAATATCTCAAGTGAGATAAAATTT
229432 TGGTTTCAAG
Statistics
Matches: 251, Mismatches: 69, Indels: 58
0.66 0.18 0.15
Matches are distributed among these distances:
32 4 0.02
33 20 0.08
34 87 0.35
35 45 0.18
36 51 0.20
37 34 0.14
38 9 0.04
39 1 0.00
ACGTcount: A:0.41, C:0.11, G:0.19, T:0.29
Consensus pattern (34 bp):
TTTCAAGAAAATATCTCAAGTGAGATAAAATTTA
Found at i:229269 original size:36 final size:34
Alignment explanation
Indices: 229228--229354 Score: 103
Period size: 37 Copynumber: 3.6 Consensus size: 34
229218 AAAAATTCTA
*
229228 GAAAACTATCTCAAGTGAGACAAAATTGGTTTTAAG
1 GAAAACTATCTCAAGCGAGACAAAATT--TTTTAAG
* * *
229264 GAAAACTATCTCGAGCGAGATAAAACTCTATTTTCA-
1 GAAAACTATCTCAAGCGAGACAAAA-T-T-TTTTAAG
* * **
229300 GAGAAACTGTCTCAAGCGAGACAAAAATTTCCAAG
1 GA-AAACTATCTCAAGCGAGACAAAATTTTTTAAG
* *
229335 GAAAAATATCTCAAGTGAGA
1 GAAAACTATCTCAAGCGAGA
229355 TGAATTTTTT
Statistics
Matches: 72, Mismatches: 15, Indels: 10
0.74 0.15 0.10
Matches are distributed among these distances:
34 18 0.25
35 3 0.04
36 24 0.33
37 26 0.36
38 1 0.01
ACGTcount: A:0.43, C:0.16, G:0.18, T:0.24
Consensus pattern (34 bp):
GAAAACTATCTCAAGCGAGACAAAATTTTTTAAG
Found at i:229581 original size:72 final size:72
Alignment explanation
Indices: 229030--229731 Score: 323
Period size: 69 Copynumber: 9.8 Consensus size: 72
229020 TGGAAAGTTT
* * * *
229030 TCTCGAGTGAGA--AAGAGTTTTCAA--GAAAATATCTCAAGTGAGAT-AAA-ATTTATTTCAAG
1 TCTCGAGTGAGATGAA-AATTTTCAAGGGAAAATATCTCAAGTGAGATGAAATTTTTGTTTCGAG
229089 AGAAACTA-
65 AGAAA-TAG
* * * * *
229097 TTTTGAGTGAGA-CAAAATTTTTCAAGGG-AAATATCTCAAGAT-AGATGCAA-CTTTGTTTCGA
1 TCTCGAGTGAGATGAAAA-TTTTCAAGGGAAAATATCTCAAG-TGAGATGAAATTTTTGTTTCGA
*
229158 GAGAAGCT-G
64 GAGAA-ATAG
* * * * * * * ****** *
229167 TCTCGAGTGAAATGAAATTTTTCACGAGAAGATATCTCGAGTGTGAT-AAA-AAAAAATTCTAGA
1 TCTCGAGTGAGATGAAAATTTTCAAGGGAAAATATCTCAAGTGAGATGAAATTTTTGTTTCGAGA
229230 -AAACTA-
66 GAAA-TAG
* * * * * * * *
229236 TCTCAAGTGAGA-CAAAATTGGTTTTAA-GGAAAACTATCTCGAGCGAGATAAAACTCTAT-TTT
1 TCTCGAGTGAGATGAAAA-T--TTTCAAGGGAAAA-TATCTCAAGTGAGATGAAA-TTTTTGTTT
229298 C-AGAGAAACT-G
61 CGAGAGAAA-TAG
* * ** * *
229309 TCTCAAGCGAGACAAAAATTTCCAAGGAAAAATATCTCAAGTGAGATG-AATTTTT-TTT-GAGA
1 TCTCGAGTGAGATGAAAATTTTCAAGGGAAAATATCTCAAGTGAGATGAAATTTTTGTTTCGAGA
229371 GAAA-ATG
66 GAAATA-G
* * * * * *
229378 TCTTGAGTGAGATGAAAAATTTCAAGAGAAAATATCTCAAGTGAGATGAAATTTTGGTTTCAAGG
1 TCTCGAGTGAGATGAAAATTTTCAAGGGAAAATATCTCAAGTGAGATGAAATTTTTGTTTCGAGA
229443 GAAACT-G
66 GAAA-TAG
* * * *
229450 TATCAAGTGAGACGAAAAAACTTTTAAAGGG-AAATATCTCAAGTGAGATGAAA-TTTTGTTTCG
1 TCTCGAGTGAGATG--AAAA-TTTTCAAGGGAAAATATCTCAAGTGAGATGAAATTTTTGTTTCG
* *
229513 AGTGAAATAA
63 AGAGAAATAG
* *
229523 TCTCGAGTGAGATGAAAATTTTCAAGGGAAAACTATCTCAAGCGAGAT-AAATTTTTGTTTTGAG
1 TCTCGAGTGAGATGAAAATTTTCAAGGGAAAA-TATCTCAAGTGAGATGAAATTTTTGTTTCGAG
**
229587 AGAAACCG
65 AGAAATAG
* * * ** * **
229595 ACTCGAGTGAGA-CACAAATTACTTCTAGAAAAAATATCTCAAGTGAGATAAAAAATTTGTTTCG
1 TCTCGAGTGAGATGA-AAATT--TTCAAGGGAAAATATCTCAAGTGAGATGAAATTTTTGTTTCG
* *
229659 AGAGAATTTG
63 AGAGAAATAG
* ** ***
229669 TCTCAAGTGA-AACAAAATTATTTTTGAGGAAAATTATCTCAAGTGAGATAGAAAATTTTTGTT
1 TCTCGAGTGAGATGAAAATT-TTCAAG-GGAAAA-TATCTCAAGTGAGAT-G-AAATTTTTGTT
229732 CCAAGAAAAA
Statistics
Matches: 481, Mismatches: 106, Indels: 87
0.71 0.16 0.13
Matches are distributed among these distances:
67 11 0.02
68 12 0.02
69 83 0.17
70 65 0.14
71 64 0.13
72 78 0.16
73 69 0.14
74 83 0.17
75 7 0.01
76 9 0.02
ACGTcount: A:0.40, C:0.11, G:0.20, T:0.29
Consensus pattern (72 bp):
TCTCGAGTGAGATGAAAATTTTCAAGGGAAAATATCTCAAGTGAGATGAAATTTTTGTTTCGAGA
GAAATAG
Found at i:229592 original size:145 final size:144
Alignment explanation
Indices: 229263--229664 Score: 408
Period size: 145 Copynumber: 2.8 Consensus size: 144
229253 TTGGTTTTAA
* ** * * * * *
229263 GGAAAACTATCTCGAGCGAGATAAAACTCTATTTTCAGAGAAACTGTCTCAAGCGAGAC-AAAAA
1 GGAAAACTATCTCAAGCGAGATAAATTTTTGTTTTAAGAGAAACTGTATCAAGTGAGACAAAAAA
** * * *
229327 -TTTCCAAGGAAAAATATCTCAAGTGAGATG-AATTTT-TTTTGAGAGAAAATGTCTTGAGTGAG
66 CTTTTAAAGG-AAAATATCTCAAGTGAGATGAAATTTTGTTTCGAGAGAAAATATCTCGAGTGAG
229389 ATGAAAAATTTCAAG
130 ATGAAAAATTTCAAG
* * * * *
229404 AGAAAA-TATCTCAAGTGAGATGAAATTTTGGTTTCAAGGGAAACTGTATCAAGTGAGACGAAAA
1 GGAAAACTATCTCAAGCGAGAT-AAATTTTTGTTTTAAGAGAAACTGTATCAAGTGAGAC-AAAA
* *
229468 AACTTTTAAAGGGAAATATCTCAAGTGAGATGAAATTTTGTTTCGAGTG-AAATAATCTCGAGTG
64 AACTTTTAAAGGAAAATATCTCAAGTGAGATGAAATTTTGTTTCGAGAGAAAAT-ATCTCGAGTG
*
229532 AGATGAAAATTTTCAAG
128 AGATGAAAAATTTCAAG
* * *
229549 GGAAAACTATCTCAAGCGAGATAAATTTTTGTTTTGAGAGAAACCG-ACTCGAGTGAGACACAAA
1 GGAAAACTATCTCAAGCGAGATAAATTTTTGTTTTAAGAGAAACTGTA-TCAAGTGAGACA-AAA
* * * *
229613 TTACTTCTAGAA--AAAATATCTCAAGTGAGATAAAAAATTTGTTTCGAGAGAA
64 -AACTTTTA-AAGGAAAATATCTCAAGTGAGAT-GAAATTTTGTTTCGAGAGAA
229665 TTTGTCTCAA
Statistics
Matches: 212, Mismatches: 35, Indels: 22
0.79 0.13 0.08
Matches are distributed among these distances:
140 13 0.06
141 32 0.15
143 24 0.11
144 19 0.09
145 86 0.41
146 35 0.17
147 3 0.01
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.28
Consensus pattern (144 bp):
GGAAAACTATCTCAAGCGAGATAAATTTTTGTTTTAAGAGAAACTGTATCAAGTGAGACAAAAAA
CTTTTAAAGGAAAATATCTCAAGTGAGATGAAATTTTGTTTCGAGAGAAAATATCTCGAGTGAGA
TGAAAAATTTCAAG
Found at i:229675 original size:38 final size:37
Alignment explanation
Indices: 229624--229728 Score: 108
Period size: 36 Copynumber: 2.8 Consensus size: 37
229614 TACTTCTAGA
*
229624 AAAAATATCTCAAGTGAGATAAAAAATTTGTTTCGA-G
1 AAAATTATCTCAAGTGAGATAAAAAATTT-TTTCGAGG
* * * *
229661 AGAATTTGTCTCAAGTGA-A-ACAAAATTATTTTTGAGG
1 A-AAATTATCTCAAGTGAGATAAAAAATT-TTTTCGAGG
*
229698 AAAATTATCTCAAGTGAGATAGAAAATTTTT
1 AAAATTATCTCAAGTGAGATAAAAAATTTTT
229729 GTTCCAAGAA
Statistics
Matches: 55, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
36 26 0.47
37 9 0.16
38 20 0.36
ACGTcount: A:0.43, C:0.08, G:0.16, T:0.33
Consensus pattern (37 bp):
AAAATTATCTCAAGTGAGATAAAAAATTTTTTCGAGG
Found at i:229678 original size:74 final size:71
Alignment explanation
Indices: 229055--229726 Score: 290
Period size: 74 Copynumber: 9.4 Consensus size: 71
229045 AGTTTTCAAG
* * * * *
229055 AAAATATCTCAAGTGAGAT-AAAATTTATTTCAAGAGAAACTA-TTTTGAGTGAGACAAAATTTT
1 AAAATATCTCAAGTGAGATAAAAATTTGTTTCGAGAGAAA-TAGTCTCGAGTGAGACAAAATTAT
*
229118 TCAAGG-
65 TCTAGGA
* ** * * * ** *
229124 GAAATATCTCAAGAT-AGATGCAACTTTGTTTCGAGAGAAGCT-GTCTCGAGTGAAATGAAATTT
1 AAAATATCTCAAG-TGAGATAAAAATTTGTTTCGAGAGAA-ATAGTCTCGAGTGAGACAAAATTA
*
229187 TTC-ACGA
64 TTCTAGGA
* * * **** * *
229194 GAAGATATCTCGAGTGTGATAAAAA-AAAATTCTAGA-AAACTA-TCTCAAGTGAGACAAAATTG
1 -AAAATATCTCAAGTGAGATAAAAATTTGTTTCGAGAGAAA-TAGTCTCGAGTGAGACAAAATT-
* *
229256 GTTTTAAGGA
63 ATTCT-AGGA
* * * * * *
229266 AAACTATCTCGAGCGAGATAAAACTCTAT-TTTC-AGAGAAACT-GTCTCAAGCGAGACAAAAAT
1 AAAATATCTCAAGTGAGATAAAAAT-T-TGTTTCGAGAGAAA-TAGTCTCGAGTGAGAC-AAAAT
* *
229328 T-TCCAAGGA
62 TATTCTAGGA
* * * * * *
229337 AAAATATCTCAAGTGAGAT--GAATTTTTTTTGAGAGAAA-ATGTCTTGAGTGAGATGAAAAAT-
1 AAAATATCTCAAGTGAGATAAAAATTTGTTTCGAGAGAAATA-GTCTCGAGTGAGA-CAAAATTA
*
229398 TTC-AAGA
64 TTCTAGGA
* * * * * *
229405 GAAAATATCTCAAGTGAGATGAAATTTTGGTTTCAAGGGAAACT-GTATCAAGTGAGACGAAAAA
1 -AAAATATCTCAAGTGAGATAAAAATTT-GTTTCGAGAGAAA-TAGTCTCGAGTGAGAC---AAA
**
229469 ACTT-TTAAAGG-
60 A-TTATTCTAGGA
* * * * * *
229480 GAAATATCTCAAGTGAGATGAAATTTTGTTTCGAGTGAAATAATCTCGAGTGAGATGAAAATT-T
1 AAAATATCTCAAGTGAGATAAAAATTTGTTTCGAGAGAAATAGTCTCGAGTGAGA-CAAAATTAT
*
229544 TCAAGGGA
65 TCTA-GGA
* * ** * ** *
229552 AAACTATCTCAAGCGAGATAAATTTTTGTTTTGAGAGAAACCGACTCGAGTGAGACACAAATTAC
1 AAAATATCTCAAGTGAGATAAAAATTTGTTTCGAGAGAAATAGTCTCGAGTGAGACA-AAATTA-
*
229617 TTCTAGAA
64 TTCTAGGA
* * * *
229625 AAAATATCTCAAGTGAGATAAAAAATTTGTTTCGAGAGAATTTGTCTCAAGTGAAACAAAATTAT
1 AAAATATCTCAAGTGAGAT-AAAAATTTGTTTCGAGAGAAATAGTCTCGAGTGAGACAAAATTA-
*
229690 TTTTGAGGA
64 TTCT-AGGA
*
229699 AAATTATCTCAAGTGAGATAGAAAATTT
1 AAAATATCTCAAGTGAGATA-AAAATTT
229727 TTGTTCCAAG
Statistics
Matches: 452, Mismatches: 107, Indels: 83
0.70 0.17 0.13
Matches are distributed among these distances:
67 1 0.00
68 7 0.02
69 81 0.18
70 50 0.11
71 65 0.14
72 76 0.17
73 70 0.15
74 97 0.21
75 3 0.01
76 2 0.00
ACGTcount: A:0.41, C:0.11, G:0.19, T:0.29
Consensus pattern (71 bp):
AAAATATCTCAAGTGAGATAAAAATTTGTTTCGAGAGAAATAGTCTCGAGTGAGACAAAATTATT
CTAGGA
Found at i:231070 original size:12 final size:12
Alignment explanation
Indices: 231038--231071 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
231028 ATGTAGAATC
**
231038 ATTCTAATATCA
1 ATTCTAATCCCA
231050 ATTCTAATCCCA
1 ATTCTAATCCCA
231062 ATTCTAATCC
1 ATTCTAATCC
231072 ATGGGAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.35, C:0.26, G:0.00, T:0.38
Consensus pattern (12 bp):
ATTCTAATCCCA
Found at i:232125 original size:18 final size:18
Alignment explanation
Indices: 232098--232132 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
232088 CGGAATGTAA
232098 GATTACCAGTGGGAATAG
1 GATTACCAGTGGGAATAG
*
232116 GATTATCAGTGGGAATA
1 GATTACCAGTGGGAATA
232133 AAATTACTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (18 bp):
GATTACCAGTGGGAATAG
Found at i:232138 original size:18 final size:18
Alignment explanation
Indices: 232099--232139 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
232089 GGAATGTAAG
**
232099 ATTACCAGTGGGAATAGG
1 ATTACCAGTGGGAATAAA
*
232117 ATTATCAGTGGGAATAAA
1 ATTACCAGTGGGAATAAA
232135 ATTAC
1 ATTAC
232140 TGGGAATGTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.39, C:0.10, G:0.24, T:0.27
Consensus pattern (18 bp):
ATTACCAGTGGGAATAAA
Found at i:233835 original size:45 final size:45
Alignment explanation
Indices: 233775--233862 Score: 115
Period size: 45 Copynumber: 2.0 Consensus size: 45
233765 ATTTAAGCAT
* *
233775 TAATTATCCGTTAATAATATC-AATAGGTTGGTGGTTTGTGGTTAA
1 TAATTATCCGTTAATAA-ATCGAATAGGTTAGTGGTTGGTGGTTAA
* * *
233820 TAATTATCCTTTAATAACTCGAGTAGGTTAGTGGTTGGTGGTT
1 TAATTATCCGTTAATAAATCGAATAGGTTAGTGGTTGGTGGTT
233863 GTAGAGGAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
44 2 0.05
45 35 0.95
ACGTcount: A:0.26, C:0.08, G:0.24, T:0.42
Consensus pattern (45 bp):
TAATTATCCGTTAATAAATCGAATAGGTTAGTGGTTGGTGGTTAA
Found at i:236809 original size:14 final size:14
Alignment explanation
Indices: 236790--236856 Score: 70
Period size: 14 Copynumber: 5.1 Consensus size: 14
236780 TTAATGAATT
236790 TAATGATTTAATAA
1 TAATGATTTAATAA
**
236804 TAATGATTTAATGC
1 TAATGATTTAATAA
*
236818 TATTGATTTAATAA
1 TAATGATTTAATAA
*
236832 T-A--A-TTACTAA
1 TAATGATTTAATAA
236842 TAATGATTTAATAA
1 TAATGATTTAATAA
236856 T
1 T
236857 GATTACAACT
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
10 7 0.17
11 2 0.05
13 1 0.02
14 31 0.76
ACGTcount: A:0.45, C:0.03, G:0.07, T:0.45
Consensus pattern (14 bp):
TAATGATTTAATAA
Found at i:237105 original size:22 final size:22
Alignment explanation
Indices: 237080--237125 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
237070 TACTAATGAT
*
237080 ATGATTTATTAATAATGATTTA
1 ATGATTTAATAATAATGATTTA
*
237102 ATGATTTAATACTAATGATTTA
1 ATGATTTAATAATAATGATTTA
237124 AT
1 AT
237126 AATAATAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.02, G:0.09, T:0.48
Consensus pattern (22 bp):
ATGATTTAATAATAATGATTTA
Found at i:237117 original size:14 final size:14
Alignment explanation
Indices: 237100--237139 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
237090 AATAATGATT
*
237100 TAATGATTTAATAC
1 TAATGATTTAATAA
237114 TAATGATTTAATAA
1 TAATGATTTAATAA
*
237128 TAATAATTTAAT
1 TAATGATTTAAT
237140 GAGTTGAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (14 bp):
TAATGATTTAATAA
Found at i:237120 original size:36 final size:36
Alignment explanation
Indices: 237080--237164 Score: 127
Period size: 36 Copynumber: 2.4 Consensus size: 36
237070 TACTAATGAT
* * *
237080 ATGATTTATTAATAATGATTTAATGA-TTTAATACTA
1 ATGATTTAATAATAATAATTTAATGAGTTGAA-ACTA
237116 ATGATTTAATAATAATAATTTAATGAGTTGAAACTA
1 ATGATTTAATAATAATAATTTAATGAGTTGAAACTA
237152 ATGATTTAATAAT
1 ATGATTTAATAAT
237165 GATTACTAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
36 41 0.91
37 4 0.09
ACGTcount: A:0.45, C:0.02, G:0.09, T:0.44
Consensus pattern (36 bp):
ATGATTTAATAATAATAATTTAATGAGTTGAAACTA
Found at i:237139 original size:22 final size:22
Alignment explanation
Indices: 237092--237185 Score: 57
Period size: 22 Copynumber: 4.2 Consensus size: 22
237082 GATTTATTAA
* * *
237092 TAATGATTTAATGAT-TTAATAC
1 TAATGATTTAATAATAATAAT-T
237114 TAATGATTTAATAATAATAATT
1 TAATGATTTAATAATAATAATT
* * *
237136 TAATGAGTTGAA-ACTAATGATT
1 TAATGA-TTTAATAATAATAATT
* * *
237158 TAATAATGATTACTAATAATGATT
1 TAATGAT--TTAATAATAATAATT
237182 TAAT
1 TAAT
237186 AATATTTACA
Statistics
Matches: 57, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
21 1 0.02
22 33 0.58
23 10 0.18
24 13 0.23
ACGTcount: A:0.45, C:0.03, G:0.10, T:0.43
Consensus pattern (22 bp):
TAATGATTTAATAATAATAATT
Found at i:237174 original size:21 final size:20
Alignment explanation
Indices: 237148--237232 Score: 72
Period size: 18 Copynumber: 4.2 Consensus size: 20
237138 ATGAGTTGAA
237148 ACTAATGATTTAATAATGATT
1 ACTAATGATTTAATAAT-ATT
237169 ACTAATAATGATTTAATAATATTT
1 AC---TAATGATTTAATAATA-TT
237193 AC-AA--ATTTAATAATATT
1 ACTAATGATTTAATAATATT
*
237210 --TAATGATTTGATAATGATT
1 ACTAATGATTTAATAAT-ATT
237229 ACTA
1 ACTA
237233 CTAATTTGAT
Statistics
Matches: 53, Mismatches: 1, Indels: 20
0.72 0.01 0.27
Matches are distributed among these distances:
16 2 0.04
17 2 0.04
18 20 0.38
19 3 0.06
20 2 0.04
21 4 0.08
23 1 0.02
24 19 0.36
ACGTcount: A:0.45, C:0.05, G:0.07, T:0.44
Consensus pattern (20 bp):
ACTAATGATTTAATAATATT
Found at i:237192 original size:10 final size:11
Alignment explanation
Indices: 237150--237213 Score: 66
Period size: 11 Copynumber: 6.1 Consensus size: 11
237140 GAGTTGAAAC
237150 TAATGATTTAA
1 TAATGATTTAA
237161 TAATGATTACTAA
1 TAATGATT--TAA
237174 TAATGATTTAA
1 TAATGATTTAA
237185 TAAT-ATTT-A
1 TAATGATTTAA
*
237194 CAA--ATTTAA
1 TAATGATTTAA
237203 TAAT-ATTTAA
1 TAATGATTTAA
237213 T
1 T
237214 GATTTGATAA
Statistics
Matches: 47, Mismatches: 2, Indels: 9
0.81 0.03 0.16
Matches are distributed among these distances:
8 4 0.09
9 6 0.13
10 11 0.23
11 15 0.32
13 11 0.23
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (11 bp):
TAATGATTTAA
Found at i:237638 original size:13 final size:12
Alignment explanation
Indices: 237613--237894 Score: 85
Period size: 11 Copynumber: 23.1 Consensus size: 12
237603 ATGTGATACC
237613 AATGATT-TAAT
1 AATGATTATAAT
237624 AATGATTACTAAT
1 AATGATTA-TAAT
*
237637 AATGA-TATAGT
1 AATGATTATAAT
237648 AATGATTATTAATTT
1 AATGATTA-TAA--T
* * *
237663 AA-AAATAT-TT
1 AATGATTATAAT
*
237673 AATGATTTGATACT
1 AATGA-TT-ATAAT
237687 AATGATT-TAAT
1 AATGATTATAAT
*
237698 -ACGATTACTAAT
1 AATGATTA-TAAT
237710 AATGATT-TAAT
1 AATGATTATAAT
*
237721 AATTATTATTAATTT
1 AATGATTA-TAA--T
*
237736 AATGATTTGATATTT
1 AATGA-TT-ATA-AT
*
237751 AATGATTTGATACT
1 AATGA-TT-ATAAT
237765 AATGATT-TAAT
1 AATGATTATAAT
237776 -ATGATTACTAAT
1 AATGATTA-TAAT
* *
237788 AATGGTTTATTATT
1 AAT-GATTA-TAAT
237802 AAT-ATT-TAAT
1 AATGATTATAAT
* *
237812 GAT--TTGATACT
1 AATGATT-ATAAT
* *
237823 AATTAATT-TAGT
1 AA-TGATTATAAT
237835 AATGATTATTAAT
1 AATGATTA-TAAT
* *
237848 AATGA-AATTAT
1 AATGATTATAAT
*
237859 AATAATTACTAAT
1 AATGATTA-TAAT
237872 AATGATT-TAAT
1 AATGATTATAAT
237883 AATGATTA-AAT
1 AATGATTATAAT
237894 A
1 A
237895 TTTAAATTTT
Statistics
Matches: 204, Mismatches: 33, Indels: 68
0.67 0.11 0.22
Matches are distributed among these distances:
9 2 0.01
10 19 0.09
11 62 0.30
12 23 0.11
13 45 0.22
14 27 0.13
15 21 0.10
16 4 0.02
17 1 0.00
ACGTcount: A:0.43, C:0.03, G:0.09, T:0.45
Consensus pattern (12 bp):
AATGATTATAAT
Found at i:237650 original size:24 final size:24
Alignment explanation
Indices: 237613--237791 Score: 80
Period size: 24 Copynumber: 7.2 Consensus size: 24
237603 ATGTGATACC
*
237613 AATGATTTAATAATGATTACTAAT
1 AATGATATAATAATGATTACTAAT
* *
237637 AATGATATAGTAATGATTATTAATTT
1 AATGATATAATAATGATTACTAA--T
** * *
237663 AAAAATAT-TTAATGATTTGA-TACT
1 AATGATATAATAATGA-TT-ACTAAT
* *
237687 AATGATTTAAT-ACGATTACTAAT
1 AATGATATAATAATGATTACTAAT
* * *
237710 AATGATTTAATAATTATTATTAATTT
1 AATGATATAATAATGATTACTAA--T
* *
237736 AATGATTTGATATTTAATGATTTGA-TACT
1 AATGA--T-ATA-ATAATGA-TT-ACTAAT
*
237765 AATGATTTAAT-ATGATTACTAAT
1 AATGATATAATAATGATTACTAAT
237788 AATG
1 AATG
237792 GTTTATTATT
Statistics
Matches: 116, Mismatches: 23, Indels: 33
0.67 0.13 0.19
Matches are distributed among these distances:
22 2 0.02
23 25 0.22
24 41 0.35
25 8 0.07
26 19 0.16
27 2 0.02
28 1 0.01
29 8 0.07
30 5 0.04
31 4 0.03
32 1 0.01
ACGTcount: A:0.42, C:0.03, G:0.09, T:0.45
Consensus pattern (24 bp):
AATGATATAATAATGATTACTAAT
Found at i:237689 original size:14 final size:14
Alignment explanation
Indices: 237672--237776 Score: 62
Period size: 14 Copynumber: 7.9 Consensus size: 14
237662 TAAAAATATT
*
237672 TAATGATTTGATAC
1 TAATGATTTAATAC
237686 TAATGATTTAATAC
1 TAATGATTTAATAC
* *
237700 ----GA-TTACTAA
1 TAATGATTTAATAC
*
237709 TAATGATTTAATAA
1 TAATGATTTAATAC
* * *
237723 TTATTA-TTAAT-T
1 TAATGATTTAATAC
* *
237735 TAATGATTTGATATT
1 TAATGATTTAATA-C
*
237750 TAATGATTTGATAC
1 TAATGATTTAATAC
237764 TAATGATTTAATA
1 TAATGATTTAATA
237777 TGATTACTAA
Statistics
Matches: 71, Mismatches: 12, Indels: 16
0.72 0.12 0.16
Matches are distributed among these distances:
9 5 0.07
10 2 0.03
12 4 0.06
13 11 0.15
14 35 0.49
15 14 0.20
ACGTcount: A:0.40, C:0.04, G:0.10, T:0.47
Consensus pattern (14 bp):
TAATGATTTAATAC
Found at i:237714 original size:73 final size:73
Alignment explanation
Indices: 237578--237791 Score: 279
Period size: 78 Copynumber: 2.9 Consensus size: 73
237568 AGGAAGTATC
* * *
237578 GATTATTAA--TAATAATAATTTAATGATGTGATACCAATGATTTAATAATGATTACTAATAATG
1 GATTATTAATTTAAAAAT-ATTTAATGATTTGATACTAATGATTTAAT-ATGATTACTAATAATG
*
237641 ATATAGTAAT
64 ATATAATAAT
*
237651 GATTATTAATTTAAAAATATTTAATGATTTGATACTAATGATTTAATACGATTACTAATAATGAT
1 GATTATTAATTTAAAAATATTTAATGATTTGATACTAATGATTTAATATGATTACTAATAATGAT
*
237716 TTAATAAT
66 ATAATAAT
* *
237724 TATTATTAATTTAATGATTTGATATTTAATGATTTGATACTAATGATTTAATATGATTACTAATA
1 GATTATTAATTTAA--A---AATATTTAATGATTTGATACTAATGATTTAATATGATTACTAATA
237789 ATG
61 ATG
237792 GTTTATTATT
Statistics
Matches: 125, Mismatches: 9, Indels: 9
0.87 0.06 0.06
Matches are distributed among these distances:
73 45 0.36
74 27 0.22
75 7 0.06
78 46 0.37
ACGTcount: A:0.43, C:0.04, G:0.10, T:0.44
Consensus pattern (73 bp):
GATTATTAATTTAAAAATATTTAATGATTTGATACTAATGATTTAATATGATTACTAATAATGAT
ATAATAAT
Found at i:237750 original size:15 final size:15
Alignment explanation
Indices: 237732--237777 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
237722 ATTATTATTA
237732 ATTTAATGATTTGAT
1 ATTTAATGATTTGAT
237747 ATTTAATGATTTGAT
1 ATTTAATGATTTGAT
* *
237762 A-CTAATGATTTAAT
1 ATTTAATGATTTGAT
237776 AT
1 AT
237778 GATTACTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
14 12 0.43
15 16 0.57
ACGTcount: A:0.37, C:0.02, G:0.11, T:0.50
Consensus pattern (15 bp):
ATTTAATGATTTGAT
Found at i:237858 original size:58 final size:57
Alignment explanation
Indices: 237745--237862 Score: 150
Period size: 58 Copynumber: 2.1 Consensus size: 57
237735 TAATGATTTG
* **
237745 ATATTTAATGATTTGATACTAATGATTTAATATGATTACTAATAATGGTTTATTATTA
1 ATATTTAATGATTTGATACTAATAATTTAATATGATTACTAATAATGGTAAATTA-TA
* *
237803 ATATTTAATGATTTGATACTAATTAATTTAGTAATGATTATTAATAAT-G-AAATTATA
1 ATATTTAATGATTTGATACTAA-TAATTTAAT-ATGATTACTAATAATGGTAAATTATA
237860 ATA
1 ATA
237863 ATTACTAATA
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
57 5 0.09
58 26 0.49
59 8 0.15
60 14 0.26
ACGTcount: A:0.42, C:0.03, G:0.09, T:0.47
Consensus pattern (57 bp):
ATATTTAATGATTTGATACTAATAATTTAATATGATTACTAATAATGGTAAATTATA
Found at i:237866 original size:24 final size:21
Alignment explanation
Indices: 237834--237891 Score: 62
Period size: 24 Copynumber: 2.6 Consensus size: 21
237824 ATTAATTTAG
*
237834 TAATGATTATTAATAATGAAATT
1 TAATAATTATTAATAATG--ATT
*
237857 ATAATAATTACTAATAATGATT
1 -TAATAATTATTAATAATGATT
*
237879 TAATAATGATTAA
1 TAATAATTATTAA
237892 ATATTTAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 11 0.37
22 3 0.10
24 16 0.53
ACGTcount: A:0.50, C:0.02, G:0.07, T:0.41
Consensus pattern (21 bp):
TAATAATTATTAATAATGATT
Found at i:237882 original size:21 final size:23
Alignment explanation
Indices: 237834--237885 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 23
237824 ATTAATTTAG
* *
237834 TAATGATTATTAATAATGAAATTA
1 TAATAATTACTAATAATG-AATTA
237858 TAATAATTACTAATAATG-ATT-
1 TAATAATTACTAATAATGAATTA
237879 TAATAAT
1 TAATAAT
237886 GATTAAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 7 0.27
22 3 0.12
24 16 0.62
ACGTcount: A:0.50, C:0.02, G:0.06, T:0.42
Consensus pattern (23 bp):
TAATAATTACTAATAATGAATTA
Done.