genome.fa.s9015.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009015.1 Hibiscus syriacus cultivar Beakdansim tig00112405_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151179

Tables:   1   

This is table  1  of  1  ( 100 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2775--2812	17	2.2	18	86	13	53	34	0	2	63	1.09
2807--2855	16	3.1	16	75	0	53	30	0	2	67	1.02
8619--8669	12	3.9	12	82	14	57	62	5	0	31	1.19
12279--12334	20	2.7	22	75	13	64	17	7	1	73	1.15
14513--14566	24	2.2	24	86	0	72	35	16	33	14	1.90
22379--22417	19	2.1	19	85	0	51	12	7	25	53	1.65
27835--27874	21	1.9	21	84	0	53	45	15	15	25	1.84
31417--31456	20	2.0	20	85	0	53	30	30	22	17	1.97
32655--32707	24	2.2	24	83	9	65	28	1	26	43	1.65
32966--33020	23	2.4	23	90	0	83	21	27	23	27	1.99
35933--35967	17	2.0	18	88	5	54	37	2	0	60	1.12
42526--42551	12	2.2	12	100	0	52	50	23	11	15	1.76
44219--44244	2	13.0	2	100	0	52	50	0	50	0	1.00
46253--46450	98	2.0	98	98	0	378	34	17	22	25	1.95
49062--49119	20	2.6	22	89	10	84	31	20	22	25	1.98
50489--50549	29	2.1	29	84	3	77	18	16	27	37	1.92
52379--52437	30	2.0	30	93	6	102	42	13	6	37	1.71
54023--54077	22	2.4	23	84	6	76	21	7	32	38	1.81
58650--58810	64	2.5	63	84	5	198	32	18	21	27	1.96
60175--60245	21	3.3	22	82	5	92	28	23	19	28	1.99
64089--64249	64	2.5	63	84	5	198	32	18	21	27	1.96
65625--65687	21	3.0	21	86	4	90	26	25	23	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65624--65695	22	3.3	22	84	3	101	27	23	20	27	1.99
69549--69709	64	2.5	63	85	5	207	33	18	20	27	1.96
71087--71149	21	3.0	21	86	4	90	26	25	23	23	2.00
71086--71157	22	3.3	22	84	3	101	27	23	20	27	1.99
77299--77365	34	2.0	34	85	11	93	49	5	2	41	1.42
79422--79467	24	1.9	24	95	0	83	45	10	26	17	1.81
82618--82731	18	6.4	18	83	2	149	35	27	14	22	1.93
82621--82731	36	3.1	36	90	2	179	36	26	14	22	1.92
86832--86883	27	2.0	26	88	3	77	46	7	1	44	1.43
87721--87775	21	2.6	21	100	0	110	47	14	14	23	1.81
87804--87854	20	2.5	20	96	0	93	31	9	15	43	1.80
88056--88235	73	2.5	72	81	7	211	36	12	11	40	1.78
88666--88728	8	7.6	8	80	15	58	76	0	0	23	0.79
88643--88728	40	2.2	40	83	8	104	73	0	2	24	0.95
88665--88729	30	2.2	29	81	10	80	75	0	0	24	0.81
88817--88857	3	13.7	3	86	0	55	73	0	2	24	0.96
88816--88875	15	4.1	15	84	2	59	76	0	3	20	0.92
88858--88892	12	2.9	12	100	0	70	77	0	8	14	0.99
90178--90220	14	3.1	14	87	9	54	74	0	4	20	1.00
90340--90498	75	2.1	75	90	4	250	44	3	1	50	1.28
90240--90506	36	7.6	34	76	14	219	44	4	1	49	1.33
90445--90618	59	2.9	62	79	6	164	48	6	2	43	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90472--90519	23	2.2	22	85	7	62	45	6	0	47	1.27
90498--90569	36	1.9	38	86	5	103	45	8	5	40	1.57
90695--90735	2	22.0	2	83	14	52	53	0	0	46	1.00
99338--99397	31	1.9	31	86	0	84	26	13	26	33	1.93
102475--102555	16	5.1	16	71	13	51	72	0	4	22	1.03
102482--102534	18	2.9	18	75	5	54	73	0	3	22	0.99
102523--102607	35	2.5	32	74	22	75	65	1	4	28	1.19
102659--102735	18	4.0	18	77	12	64	67	0	3	28	1.08
102701--102731	14	2.2	14	94	0	53	67	0	0	32	0.91
103129--103171	17	2.5	17	85	7	52	41	23	6	27	1.80
104052--104302	110	2.3	106	83	6	301	23	19	23	33	1.97
105158--105205	19	2.8	18	78	15	57	33	10	22	33	1.88
105170--105259	37	2.5	36	83	5	103	41	15	21	22	1.90
105292--105468	36	5.1	36	73	15	174	38	11	19	29	1.88
105190--105462	101	2.7	102	85	2	343	39	12	19	28	1.88
105392--105468	37	2.1	38	87	2	111	40	12	18	28	1.87
106940--107077	69	2.0	69	92	2	233	25	14	21	39	1.91
107149--107198	13	3.8	14	84	12	70	4	16	4	76	1.10
107149--107200	27	2.0	26	92	7	88	3	15	3	76	1.07
110290--110322	10	3.4	10	91	4	50	81	3	0	15	0.80
110290--110330	19	2.2	19	86	8	57	78	2	2	17	0.98
110376--110422	17	2.7	17	81	12	60	72	0	12	14	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110524--110581	18	3.4	16	75	13	53	75	0	1	22	0.89
110525--110614	41	2.2	39	82	13	101	71	1	2	25	1.05
110540--110597	26	2.2	26	78	6	64	72	0	3	24	1.00
110525--110614	38	2.2	41	82	9	114	71	1	2	25	1.05
110628--110682	2	28.5	2	85	14	80	52	0	1	45	1.11
110668--110729	23	2.7	23	80	11	67	67	0	4	27	1.10
113115--113170	22	2.6	21	83	8	60	35	10	0	53	1.36
116864--116941	20	3.9	20	84	5	95	43	16	16	23	1.87
116855--116943	40	2.2	40	83	0	124	42	20	15	21	1.89
116935--117002	20	3.3	20	85	4	75	38	29	13	19	1.89
116995--117088	47	2.0	47	87	0	134	22	25	18	34	1.96
117058--117148	20	4.6	20	90	0	137	25	28	14	31	1.94
117211--117280	20	3.5	20	77	9	52	25	30	18	25	1.98
117339--117409	20	3.5	20	86	3	99	32	22	11	33	1.90
117299--117391	47	2.0	47	87	4	134	30	23	13	32	1.94
117319--117370	27	1.9	27	92	0	86	30	23	11	34	1.90
117404--117522	47	2.5	47	87	0	175	35	19	21	23	1.96
117505--117566	21	3.0	21	78	2	72	27	12	29	30	1.93
117596--117665	20	3.5	20	82	0	86	21	15	20	42	1.88
127165--127230	27	2.4	27	85	5	80	69	3	1	25	1.11
127163--127231	28	2.4	28	80	9	77	69	2	1	26	1.11
128413--128462	6	7.7	7	90	2	54	62	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128420--128484	3	21.0	3	85	6	85	61	0	1	36	1.05
128611--128759	45	3.3	45	93	1	244	36	19	20	23	1.95
129022--129473	37	12.3	36	75	3	357	35	12	20	31	1.90
128983--129412	73	5.9	73	90	1	628	35	13	20	31	1.90
129371--129512	74	1.9	74	85	5	198	35	12	20	30	1.90
129410--129510	37	2.8	35	70	8	94	39	11	17	30	1.86
130231--130285	22	2.5	22	93	0	101	38	14	10	36	1.81
136253--136295	18	2.5	17	82	10	52	37	13	9	39	1.78
136856--136890	15	2.4	15	90	4	54	62	8	14	14	1.53
139142--139193	3	17.7	3	78	11	54	69	1	0	28	0.99
140405--140464	3	20.0	3	86	6	86	63	0	0	36	0.95
141290--141403	57	2.0	58	82	3	140	37	13	10	38	1.79

Tables:   1

The End!