genome.fa.s9016.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009016.1 Hibiscus syriacus cultivar Beakdansim tig00112406_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139424

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3604--3641	20	1.9	20	88	0	58	26	36	26	10	1.89
6199--6404	74	2.8	74	85	4	245	23	31	23	21	1.99
10005--10043	12	3.2	13	92	7	64	53	0	0	46	1.00
10008--10043	2	19.0	2	88	11	58	52	0	0	47	1.00
12660--12699	2	20.0	2	100	0	80	50	0	0	50	1.00
16274--16331	18	3.2	17	72	13	53	39	1	3	55	1.27
19468--19521	21	2.5	21	82	14	58	44	1	1	51	1.22
20828--20852	2	12.5	2	100	0	50	52	0	0	48	1.00
22152--22228	37	2.1	37	80	9	86	51	2	3	41	1.34
23701--23745	23	2.0	23	81	0	54	53	2	6	37	1.40
24063--24877	406	2.0	405	91	1	1310	34	12	15	37	1.85
25892--25933	18	2.3	18	87	4	57	33	0	2	64	1.07
25940--25980	17	2.3	19	83	12	59	46	0	2	51	1.14
27719--28065	166	2.1	166	90	2	543	38	11	10	39	1.75
30009--30083	38	1.9	39	91	2	125	45	0	0	54	0.99
30014--30092	38	2.1	38	87	0	113	48	0	0	51	1.00
31928--31998	12	5.9	12	78	6	72	50	18	14	16	1.78
31917--31982	24	2.8	24	88	0	96	51	19	15	13	1.76
31917--32013	24	4.0	24	77	7	90	51	17	14	16	1.77
36082--36118	18	2.0	18	89	5	56	48	0	2	48	1.15
38025--38051	2	13.5	2	100	0	54	48	0	0	51	1.00
44063--44089	3	9.0	3	100	0	54	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44364--44396	12	2.8	12	90	4	50	54	0	3	42	1.15
48520--48591	24	3.0	24	85	2	101	50	18	12	19	1.78
48524--48593	12	5.9	12	75	9	63	50	18	14	17	1.79
48522--48612	47	1.9	48	84	6	123	50	16	14	18	1.78
48529--48615	24	3.7	23	84	3	102	49	17	13	19	1.79
51069--51099	13	2.4	13	94	0	53	16	19	48	16	1.81
54040--54072	12	2.8	12	90	4	50	54	0	3	42	1.15
54322--54357	15	2.5	15	90	4	56	44	5	0	50	1.25
54322--54363	15	2.9	14	83	13	50	40	4	0	54	1.21
54389--54429	18	2.2	19	86	4	57	43	2	0	53	1.13
55769--55801	2	16.5	2	100	0	66	48	0	0	51	1.00
56908--56934	3	9.0	3	100	0	54	66	0	0	33	0.92
57209--57241	12	2.8	12	90	4	50	54	0	3	42	1.15
58178--58253	24	3.2	24	84	3	73	47	18	11	22	1.81
58195--58304	24	4.6	24	85	6	125	42	19	15	22	1.88
62561--62612	24	2.2	24	82	0	59	50	17	11	21	1.77
62577--62678	24	4.3	25	87	5	117	42	19	14	23	1.88
62584--62679	48	2.0	48	86	8	133	41	19	14	23	1.89
65204--65233	13	2.3	13	94	0	51	16	23	43	16	1.87
66087--66112	2	13.0	2	100	0	52	50	0	0	50	1.00
68670--68738	27	2.4	29	80	7	70	43	2	2	50	1.32
68823--68855	12	2.8	12	90	4	50	54	0	3	42	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76173--76252	24	3.5	24	69	20	73	22	25	22	30	1.99
78035--78065	14	2.1	15	94	5	55	29	12	0	58	1.35
79488--79522	2	17.5	2	100	0	70	48	0	0	51	1.00
80779--80847	27	2.4	29	80	7	70	43	2	2	50	1.32
81877--81932	19	2.9	19	85	12	78	16	21	28	33	1.95
81877--81925	10	4.8	11	83	16	70	16	20	26	36	1.93
81878--81932	9	5.6	10	83	12	78	14	21	29	34	1.93
81994--82069	29	2.6	29	82	0	89	21	9	26	43	1.82
87971--88047	37	2.1	37	80	9	86	51	2	3	41	1.34
91430--91481	19	2.7	19	93	0	86	25	17	32	25	1.97
91951--92227	58	4.7	57	74	10	222	35	10	23	30	1.88
91952--92227	117	2.4	117	86	2	376	35	10	23	30	1.88
98922--99030	24	4.5	24	76	11	91	19	12	16	51	1.76
99848--99873	2	13.0	2	100	0	52	50	0	0	50	1.00
102595--102671	37	2.1	37	80	9	86	51	2	3	41	1.34
107287--107312	2	13.0	2	100	0	52	50	0	0	50	1.00
120259--120331	38	1.9	37	83	8	94	53	4	0	42	1.20
120755--120794	18	2.2	18	86	8	55	42	0	2	55	1.13
123917--123942	2	13.0	2	100	0	52	50	0	0	50	1.00
126614--126699	31	2.8	31	77	13	90	55	2	4	37	1.33
126633--126699	29	2.2	29	84	5	80	52	2	2	41	1.32
126626--126710	29	3.0	26	75	18	73	54	2	3	40	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127128--127168	18	2.2	19	87	12	59	43	0	2	53	1.13
130283--130312	2	15.0	2	100	0	60	50	0	0	50	1.00

Tables:   1

The End!