Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009017.1 Hibiscus syriacus cultivar Beakdansim tig00112407_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1192163
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 6
Found at i:770283 original size:21 final size:22
Alignment explanation
Indices: 770247--770292 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
770237 AAAATATATT
770247 TATTAATATTTATAATAATATAA
1 TATTAATATTT-TAATAATATAA
*
770270 TATT-ATATTTTAATATTATAA
1 TATTAATATTTTAATAATATAA
770291 TA
1 TA
770293 AAATAATCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 12 0.55
22 6 0.27
23 4 0.18
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
TATTAATATTTTAATAATATAA
Found at i:770373 original size:25 final size:25
Alignment explanation
Indices: 770323--770408 Score: 86
Period size: 28 Copynumber: 3.4 Consensus size: 25
770313 ATAATATAAG
* * *
770323 ATATAATA-TTTTTATTTTAATAAAT
1 ATATAATATTTTTTA-TATATTTAAT
770348 ATATAATATTTTTTATATATTTAAT
1 ATATAATATTTTTTATATATTTAAT
*
770373 AATGAATAATATTATTTATATATTTAAT
1 -AT--ATAATATTTTTTATATATTTAAT
770401 AT-TAATAT
1 ATATAATAT
770409 AATAATCTAA
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
24 6 0.11
25 15 0.28
26 8 0.15
27 2 0.04
28 22 0.42
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (25 bp):
ATATAATATTTTTTATATATTTAAT
Found at i:770430 original size:19 final size:18
Alignment explanation
Indices: 770362--770432 Score: 52
Period size: 19 Copynumber: 3.7 Consensus size: 18
770352 AATATTTTTT
*
770362 ATATATTTAATAATGAATA
1 ATAT-TTTAATAATTAATA
*
770381 ATATTATTTATATATTTAATA
1 ATA-T-TTTA-ATAATTAATA
* * *
770402 TTAATATAATAATCTAATA
1 ATATTTTAATAAT-TAATA
770421 ATATTTTAATAA
1 ATATTTTAATAA
770433 AGATATTTAA
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
18 4 0.10
19 20 0.50
20 6 0.15
21 10 0.25
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (18 bp):
ATATTTTAATAATTAATA
Found at i:770453 original size:23 final size:23
Alignment explanation
Indices: 770427--770471 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
770417 AATAATATTT
770427 TAATAAAGATATTTAAAATATAC
1 TAATAAAGATATTTAAAATATAC
* * *
770450 TAATTAATATTTTTAAAATATA
1 TAATAAAGATATTTAAAATATA
770472 ATATTACACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (23 bp):
TAATAAAGATATTTAAAATATAC
Found at i:770831 original size:30 final size:29
Alignment explanation
Indices: 770780--770852 Score: 121
Period size: 30 Copynumber: 2.5 Consensus size: 29
770770 TTCCAGAAAT
770780 GTAATTCA-TTTCCAGAATTCAAATTCCA
1 GTAATTCATTTTCCAGAATTCAAATTCCA
770808 GTAATTCATTTTCCAGTAATTCAAATTCCA
1 GTAATTCATTTTCCAG-AATTCAAATTCCA
*
770838 GTAATTTATTTTCCA
1 GTAATTCATTTTCCA
770853 AAAATCCAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
28 8 0.19
29 7 0.17
30 27 0.64
ACGTcount: A:0.33, C:0.19, G:0.07, T:0.41
Consensus pattern (29 bp):
GTAATTCATTTTCCAGAATTCAAATTCCA
Found at i:770851 original size:15 final size:15
Alignment explanation
Indices: 770780--770852 Score: 87
Period size: 15 Copynumber: 5.0 Consensus size: 15
770770 TTCCAGAAAT
770780 GTAATTCA-TTTCCA
1 GTAATTCATTTTCCA
**
770794 G-AATTCAAATTCCA
1 GTAATTCATTTTCCA
770808 GTAATTCATTTTCCA
1 GTAATTCATTTTCCA
**
770823 GTAATTCAAATTCCA
1 GTAATTCATTTTCCA
*
770838 GTAATTTATTTTCCA
1 GTAATTCATTTTCCA
770853 AAAATCCAAT
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
13 6 0.12
14 7 0.14
15 36 0.73
ACGTcount: A:0.33, C:0.19, G:0.07, T:0.41
Consensus pattern (15 bp):
GTAATTCATTTTCCA
Found at i:772245 original size:32 final size:32
Alignment explanation
Indices: 772209--772288 Score: 97
Period size: 32 Copynumber: 2.5 Consensus size: 32
772199 AACTATTATG
* *
772209 CATTATCTAAATGCGACACTAACTTTGTAGTA
1 CATTATCTAAATGCAACACTAACTCTGTAGTA
* * * * *
772241 CATTATCTAAATACAACATTGACTCTGTTGTG
1 CATTATCTAAATGCAACACTAACTCTGTAGTA
772273 CATTATCTAAATGCAA
1 CATTATCTAAATGCAA
772289 TGATGCTAGT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (32 bp):
CATTATCTAAATGCAACACTAACTCTGTAGTA
Found at i:773718 original size:18 final size:17
Alignment explanation
Indices: 773695--773749 Score: 67
Period size: 17 Copynumber: 3.2 Consensus size: 17
773685 ACGTATGTTC
*
773695 TTCATTCAATAAATTTAG
1 TTCATTCAATAAA-CTAG
*
773713 TTCATTCATTAAACTAG
1 TTCATTCAATAAACTAG
773730 TTCATT-AATCAAACTAG
1 TTCATTCAAT-AAACTAG
773747 TTC
1 TTC
773750 CTTTAATGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
16 2 0.06
17 19 0.58
18 12 0.36
ACGTcount: A:0.36, C:0.16, G:0.05, T:0.42
Consensus pattern (17 bp):
TTCATTCAATAAACTAG
Found at i:789438 original size:21 final size:19
Alignment explanation
Indices: 789410--789455 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 19
789400 TCATTGAATC
789410 ATTA-TTCTTAGCTCCTTAAT
1 ATTAGTTCTTAGCT--TTAAT
789430 ATTAGTTCTTAGCTTTAAT
1 ATTAGTTCTTAGCTTTAAT
789449 ACTTAGT
1 A-TTAGT
789456 AGGATTAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 9 0.38
21 9 0.38
ACGTcount: A:0.26, C:0.15, G:0.09, T:0.50
Consensus pattern (19 bp):
ATTAGTTCTTAGCTTTAAT
Found at i:798706 original size:43 final size:43
Alignment explanation
Indices: 798645--798731 Score: 165
Period size: 43 Copynumber: 2.0 Consensus size: 43
798635 AGCCAGTGTT
*
798645 TAAAGAAAATGTTGGTACTTTATTTCATAATAATGGGAATCAC
1 TAAAGAAAATGTTAGTACTTTATTTCATAATAATGGGAATCAC
798688 TAAAGAAAATGTTAGTACTTTATTTCATAATAATGGGAATCAC
1 TAAAGAAAATGTTAGTACTTTATTTCATAATAATGGGAATCAC
798731 T
1 T
798732 CTCAATCTTC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.36
Consensus pattern (43 bp):
TAAAGAAAATGTTAGTACTTTATTTCATAATAATGGGAATCAC
Found at i:798857 original size:21 final size:21
Alignment explanation
Indices: 798833--798874 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
798823 CAGGTCAGAC
*
798833 TTTAATGGGCCTGAGCCTGGT
1 TTTAATAGGCCTGAGCCTGGT
*
798854 TTTAATAGGTCTGAGCCTGGT
1 TTTAATAGGCCTGAGCCTGGT
798875 CTACGATGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.17, C:0.17, G:0.31, T:0.36
Consensus pattern (21 bp):
TTTAATAGGCCTGAGCCTGGT
Found at i:799361 original size:77 final size:77
Alignment explanation
Indices: 799234--799388 Score: 301
Period size: 77 Copynumber: 2.0 Consensus size: 77
799224 TACAACCTTA
799234 TAAGCATGTGGGAATTGGCAAGACCAATGCAGTGTTCTTCACGTGGGAGCATGGGTGGCTGTTGA
1 TAAGCATGTGGGAATTGGCAAGACCAATGCAGTGTTCTTCACGTGGGAGCATGGGTGGCTGTTGA
*
799299 ATCTGTCGCAAC
66 ATATGTCGCAAC
799311 TAAGCATGTGGGAATTGGCAAGACCAATGCAGTGTTCTTCACGTGGGAGCATGGGTGGCTGTTGA
1 TAAGCATGTGGGAATTGGCAAGACCAATGCAGTGTTCTTCACGTGGGAGCATGGGTGGCTGTTGA
799376 ATATGTCGCAAC
66 ATATGTCGCAAC
799388 T
1 T
799389 GTCTTTCGAG
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
77 77 1.00
ACGTcount: A:0.24, C:0.17, G:0.32, T:0.26
Consensus pattern (77 bp):
TAAGCATGTGGGAATTGGCAAGACCAATGCAGTGTTCTTCACGTGGGAGCATGGGTGGCTGTTGA
ATATGTCGCAAC
Found at i:799928 original size:33 final size:36
Alignment explanation
Indices: 799864--799930 Score: 95
Period size: 37 Copynumber: 1.9 Consensus size: 36
799854 AAGAAAATAA
799864 ATAAAACAAATAAACAAAGTACGAATAATATATATAT
1 ATAAAACAAATAAACAAAGTAC-AATAATATATATAT
*
799901 ATAAAATAAATAAA-AAAGTA-AAT-ATATATA
1 ATAAAACAAATAAACAAAGTACAATAATATATA
799931 AATTAATAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 7 0.24
34 3 0.10
36 6 0.21
37 13 0.45
ACGTcount: A:0.66, C:0.04, G:0.04, T:0.25
Consensus pattern (36 bp):
ATAAAACAAATAAACAAAGTACAATAATATATATAT
Found at i:800178 original size:2 final size:2
Alignment explanation
Indices: 800173--800220 Score: 80
Period size: 2 Copynumber: 24.5 Consensus size: 2
800163 CTTGTGTAGA
*
800173 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AA AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
800214 AT AT AT A
1 AT AT AT A
800221 AAAAAATATA
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:800268 original size:28 final size:25
Alignment explanation
Indices: 800201--800270 Score: 68
Period size: 27 Copynumber: 2.6 Consensus size: 25
800191 ATATATATAT
* *
800201 ATATATATAAAATATATATAAAAAA
1 ATATAGATAAAATAAATATAAAAAA
* *
800226 ATATAGAAAATAATAAATATATATAAA
1 ATATAGATAA-AATAAATATA-AAAAA
800253 ATATAGACTTAAAATAAA
1 ATATAGA--TAAAATAAA
800271 AAAAAATATA
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
25 8 0.22
26 9 0.25
27 11 0.31
28 6 0.17
29 2 0.06
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (25 bp):
ATATAGATAAAATAAATATAAAAAA
Found at i:800374 original size:12 final size:11
Alignment explanation
Indices: 800347--800386 Score: 55
Period size: 12 Copynumber: 3.6 Consensus size: 11
800337 TAACAAAATA
*
800347 AATAATATAA-
1 AATAATACAAG
800357 AATAATACAAG
1 AATAATACAAG
800368 TAATAATACAAG
1 -AATAATACAAG
800380 AATAATA
1 AATAATA
800387 AAAAGAAAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 9 0.33
11 7 0.26
12 11 0.41
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.25
Consensus pattern (11 bp):
AATAATACAAG
Found at i:800429 original size:22 final size:23
Alignment explanation
Indices: 800402--800450 Score: 75
Period size: 22 Copynumber: 2.2 Consensus size: 23
800392 AAAGAGAAAG
800402 TAAAAAAATAATA-ATA-ATAATA
1 TAAAAAAAT-ATACATATATAATA
800424 TAAAAAAATATACATATATAATA
1 TAAAAAAATATACATATATAATA
800447 TAAA
1 TAAA
800451 TAAGTAGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 3 0.12
22 12 0.48
23 10 0.40
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (23 bp):
TAAAAAAATATACATATATAATA
Found at i:800489 original size:12 final size:12
Alignment explanation
Indices: 800467--800511 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
800457 GAATAAAAGG
800467 AAAATATAATAGT
1 AAAA-ATAATAGT
*
800480 AAAAATAATAAT
1 AAAAATAATAGT
*
800492 AAATATAATAGT
1 AAAAATAATAGT
*
800504 AATAATAA
1 AAAAATAA
800512 AAATGCAAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
12 23 0.85
13 4 0.15
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (12 bp):
AAAAATAATAGT
Found at i:801096 original size:37 final size:37
Alignment explanation
Indices: 801055--801159 Score: 147
Period size: 37 Copynumber: 2.8 Consensus size: 37
801045 GTGCTTGTGG
* * *
801055 ATCCTATCTTTAGGAGTTTAAAACATAGTAGAACTCT
1 ATCCTATTTTTAGGAGTTTAAATCCTAGTAGAACTCT
* * *
801092 ATCCTATTTTTAGGAGTTTAAATCCTAGCAAAATTCT
1 ATCCTATTTTTAGGAGTTTAAATCCTAGTAGAACTCT
*
801129 ATCATATTTTTAGGAGTTTAAATCCTAGTAG
1 ATCCTATTTTTAGGAGTTTAAATCCTAGTAG
801160 GATGAAAAGG
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.39
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTAAATCCTAGTAGAACTCT
Found at i:802198 original size:106 final size:106
Alignment explanation
Indices: 801893--804634 Score: 4212
Period size: 106 Copynumber: 25.9 Consensus size: 106
801883 TTGTTCTGAA
* * ** * *
801893 TCCAATATCCTCCG-TCGTGAAGTTGAAATTGGCTCTGGAACCGAGAAATTGTTTGTTGACAACC
1 TCCAATATCCTTCGCT-GTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACC
* * * * **
801957 AGTC-GCCCCTTCGTTGTGAAGTTGAATTTGTGTTGTCTCAAG
65 AG-CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
* * * * *
801999 TCCAATATCCTTCGCTGTGAAGTTTAAATTGACTTTG-AA-T--GAA-AT-TTTGTTGACAATCA
1 TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCA
* * *
802058 GCCG-CCTCTTCGTCGTGAAGTTGAGCTTGTGTTGTCTTGG-G
66 GCGGTCC-CTTCGTCGTGAAGTTGAACTTGCGTTGTC-TGGAG
* * * * *
802099 TTCAAGATCCTTCGCTGAGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGATAACCA
1 TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCA
* * *
802164 ACGGTCCCTTCGTCGTCAAGTTGAACTTGCGTTGTCTTGAG
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
* * * * *
802205 TCCAATATCCTACGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTATTTATTGAAAACCA
1 TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCA
802270 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
* * *
802311 TCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACAACCA
1 TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCA
* *
802376 GCGGTCCCTTCATCGTGAAGTTGAACTTGCATTGTCTGGAG
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
* *
802417 TCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCA
1 TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCA
*
802482 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTTGAG
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
* *
802523 TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTTTGAAATTGGGAAATTGTTTGTTGACAACCA
1 TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCA
* *
802588 GCGGTCCCTTCATCGTGAAGTTAAACTTGCGTTGTCTGGAG
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
* * * *
802629 TCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATTGAGAAGTTGTTTGTTGATAACCA
1 TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCA
* * *
802694 ACGGTCCCTTCATCATGAAGTTGAACTTGCGTTGTCTGGAG
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
** * * *
802735 TCCAATATCCTTCATTGTGAAGTTGAAATTGGTTCTGAAATTGAGAAGTTATTTGTTGACAACCA
1 TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCA
*
802800 GCGGTCCCTTCGTTGTGAAGTTGAACTTGCGTTGTCTGGAG
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
*
802841 TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCA
1 TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCA
802906 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT-GAG
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
* *
802946 TCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCA
1 TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCA
803011 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
* * * *
803052 TCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCCGAAATTGGGAAATTGTTTGTTGACAACCA
1 TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCA
* *
803117 GCGGTCCCTTCGTCCTGAAGTTGAACTTACGTTGTCTGGAG
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
* * ** *
803158 TCCAATATCTTTCGCTGTGGAGTTGAAATTGGCTCCAAAATTGGGAAATTGTTTGTTGACAACCA
1 TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCA
*
803223 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTCGAG
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
* * * *
803264 TCCAATATCCTTCGTTGTGAAGTTAAAATTGGCTCTGATATTGGGAAGTTGTTTGTTTACAACCA
1 TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCA
*
803329 GCGGTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTGGAG
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
** **
803370 TCCAATATCCTTCATTGTGAAGTTGAAATTGGCTCTGAAATTGAAAAGTTGTTTGTTGACAACCA
1 TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCA
*
803435 GCGGTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTGGAG
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
* *
803476 TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACTA
1 TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCA
*
803541 GTGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
* *
803582 TCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCA
1 TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCA
803647 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
* * *
803688 TCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAATTGTTTGTTGACAACCA
1 TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCA
*
803753 GCGGTCCCTTCGTCGTGAAGTTGAACTTACGTTGTCTGGAG
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
* * ** *
803794 TCCAATATCTTTCGCTGTGGAGTTGAAATTGGCTCCAAAATTGGGAA-ATGTTTGTTGACAACCA
1 TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCA
*
803858 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTCGAG
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
*
803899 TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTTACAACCA
1 TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCA
*
803964 GCGGTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTGGAG
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
** **
804005 TCCAATATCCTTCATTGTGAAGTTGAAATTGGCTCTGAAATTGAAAAGTTGTTTGTTGACAACCA
1 TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCA
804070 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
* *
804111 TTCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCA
1 TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCA
* *
804176 GCGGTCCCTTCGTCATGAAGTTGAACTTGCGTTGTCTTGAG
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
* * * * *
804217 TCCAATATCCTTCGCTGTAAAGTTAAAATTGGCTCTAAAATTGGGAAGTTATTTATTGACAACCA
1 TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCA
* *
804282 GCGGTCCCTTCGTCATGAAGTTGAACTTGCGTTGTCTTGAG
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
* *
804323 TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAACCA
1 TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCA
* *
804388 GTGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTGGAG
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
* *
804429 TCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCA
1 TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCA
*
804494 GCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTGGAG
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
* *
804535 TCCAATATCCTTCGCTGTGAAGTGGAAATTGGCTCTGAATTTGGGAAGTTGTTTGTTGACAACCA
1 TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCA
* * * *
804600 GCCGTCCCTTCATTGTGAAGTTGAACTTGTGTTGT
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
804635 TCCGAGTGGC
Statistics
Matches: 2430, Mismatches: 192, Indels: 28
0.92 0.07 0.01
Matches are distributed among these distances:
99 3 0.00
100 73 0.03
101 4 0.00
102 4 0.00
104 3 0.00
105 205 0.08
106 2135 0.88
107 3 0.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (106 bp):
TCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAACCA
GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAG
Found at i:803749 original size:847 final size:847
Alignment explanation
Indices: 801893--804634 Score: 4345
Period size: 847 Copynumber: 3.2 Consensus size: 847
801883 TTGTTCTGAA
* * * ** *
801893 TCCAATATCCTCCGTCGTGAAGTTGAAATTGGCTCTGGAACCGAGAAATTGTTTGTTGACAACCA
1 TCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCA
* * * * **
801958 GTC-GCCCCTTCGTTGTGAAGTTGAATTTGTGTTGTCTCAAGTCCAATATCCTTCGCTGTGAAGT
66 G-CGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGT
* * * *
802022 TTAAATTGACTTTG-AA-T--GAAA-T-TTTGTTGACAATCAGCCG-CCTCTTCGTCGTGAAGTT
130 TGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCCGTCC-CTTCGTCGTGAAGTT
* * * * * *
802080 GAGCTTGTGTTGTCTTGGGTTCAAGATCCTTCGCTGAGAAGTTGAAATTGGCTCTGAAATTGGGA
194 GAACTTGCGTTGTC-TGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGA
* * * * *
802145 AGTTGTTTATTGATAACCAACGGTCCCTTCGTCGTCAAGTTGAACTTGCGTTGTCTTGAGTCCAA
258 AGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTCGAGTCCAA
* * * *
802210 TATCCTACGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTATTTATTGAAAACCAGCGGT
323 TATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCGGT
802275 CCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAAT
388 CCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAAT
* * *
802340 TGGCTCTAAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCATCGTGAAGTTGAACTTG
453 TGGCTCTAAAATTGGGAAATTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTG
*
802405 CATTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTT
518 CGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTT
802470 TATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTTGAGTCCAATATCCTT
583 TATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTTGAGTCCAATATCCTT
*
802535 CGCTGTGAAGTTGAAATTGGCTTTGAAATTGGGAAA-TTGTTTGTTGACAACCAGCGGTCCCTTC
648 CGCTGTGAAGTTGAAATTGGCTCTGAAATT-GGAAAGTTGTTTGTTGACAACCAGCGGTCCCTTC
* * *
802599 ATCGTGAAGTTAAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTC
712 ATCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTC
* * * ** * *
802664 TGAAATTGAGAAGTTGTTTGTTGATAACCAACGGTCCCTTCATCATGAAGTTGAACTTGCGTTGT
777 TGAAATTGGGAAGTTGTTTATTGACAACCAGTGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
802729 CTGGAG
842 CTGGAG
* * *
802735 TCCAATATCCTTCATTGTGAAGTTGAAATTGGTTCTGAAATTGAGAAGTTATTTGTTGACAACCA
1 TCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCA
*
802800 GCGGTCCCTTCGTTGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTT
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTT
* * *
802865 GAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGA
131 GAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCCGTCCCTTCGTCGTGAAGTTGA
* *
802930 ACTTGCGTTGTCTGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGT
196 ACTTGCGTTGTCTGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGT
*
802995 TGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
261 TGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTCGAGTCCAATAT
* * *
803060 CCTTCGTTGTGAAGTTGAAATTGACTCCGAAATTGGGAAATTGTTTGTTGACAACCAGCGGTCCC
326 CCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCGGTCCC
* * * * *
803125 TTCGTCCTGAAGTTGAACTTACGTTGTCTGGAGTCCAATATCTTTCGCTGTGGAGTTGAAATTGG
391 TTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGG
*
803190 CTCCAAAATTGGGAAATTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGT
456 CTCTAAAATTGGGAAATTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGT
* * * *
803255 TGTCTCGAGTCCAATATCCTTCGTTGTGAAGTTAAAATTGGCTCTGATATTGGGAAGTTGTTTGT
521 TGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTAT
* * * **
803320 TTACAACCAGCGGTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCAT
586 TGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTTGAGTCCAATATCCTTCGC
*
803385 TGTGAAGTTGAAATTGGCTCTGAAATTGAAAAGTTGTTTGTTGACAACCAGCGGTCCCTTCATCG
651 TGTGAAGTTGAAATTGGCTCTGAAATTGGAAAGTTGTTTGTTGACAACCAGCGGTCCCTTCATCG
803450 TGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAA
716 TGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAA
*
803515 ATTGGGAAGTTGTTTATTGACAACTAGTGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
781 ATTGGGAAGTTGTTTATTGACAACCAGTGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
803580 AG
846 AG
803582 TCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCA
1 TCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCA
*
803647 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTT
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTT
* *
803712 GAAATTGGCTCCGAAATTGGGAAATTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGA
131 GAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCCGTCCCTTCGTCGTGAAGTTGA
* * * **
803777 ACTTACGTTGTCTGGAGTCCAATATCTTTCGCTGTGGAGTTGAAATTGGCTCCAAAATTGGGAA-
196 ACTTGCGTTGTCT-GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAG
*
803841 ATGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTCGAGTCCAATA
260 TTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTCGAGTCCAATA
* *
803906 TCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTTACAACCAGCGGTCC
325 TCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCGGTCC
* *
803971 CTTCATCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCATTGTGAAGTTGAAATTG
390 CTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTG
* *
804036 GCTCTGAAATT-GAAAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGC
455 GCTCTAAAATTGGGAAA-TTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGC
* *
804100 GTTGTCTGGAGTTCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTT
519 GTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTT
*
804165 ATTGACAACCAGCGGTCCCTTCGTCATGAAGTTGAACTTGCGTTGTCTTGAGTCCAATATCCTTC
584 ATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTTGAGTCCAATATCCTTC
* * * * * * *
804230 GCTGTAAAGTTAAAATTGGCTCTAAAATTGGGAAGTTATTTATTGACAACCAGCGGTCCCTTCGT
649 GCTGTGAAGTTGAAATTGGCTCTGAAATTGGAAAGTTGTTTGTTGACAACCAGCGGTCCCTTCAT
* *
804295 CATGAAGTTGAACTTGCGTTGTCTTGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTG
714 CGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTG
* *
804360 AAATTGGGAAATTGTTTATTGACAACCAGTGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCT
779 AAATTGGGAAGTTGTTTATTGACAACCAGTGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
804425 GGAG
844 GGAG
804429 TCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCA
1 TCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCA
* *
804494 GCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTG
66 GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTT
* * * *
804559 GAAATTGGCTCTGAATTTGGGAAGTTGTTTGTTGACAACCAGCCGTCCCTTCATTGTGAAGTTGA
131 GAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCCGTCCCTTCGTCGTGAAGTTGA
*
804624 ACTTGTGTTGT
196 ACTTGCGTTGT
804635 TCCGAGTGGC
Statistics
Matches: 1748, Mismatches: 141, Indels: 17
0.92 0.07 0.01
Matches are distributed among these distances:
841 1 0.00
842 124 0.07
843 2 0.00
844 1 0.00
846 11 0.01
847 1521 0.87
848 86 0.05
849 2 0.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (847 bp):
TCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCA
GCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTT
GAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCCGTCCCTTCGTCGTGAAGTTGA
ACTTGCGTTGTCTGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGT
TGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTCGAGTCCAATAT
CCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACAACCAGCGGTCCC
TTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGG
CTCTAAAATTGGGAAATTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGT
TGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTAT
TGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTTGAGTCCAATATCCTTCGC
TGTGAAGTTGAAATTGGCTCTGAAATTGGAAAGTTGTTTGTTGACAACCAGCGGTCCCTTCATCG
TGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAA
ATTGGGAAGTTGTTTATTGACAACCAGTGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
AG
Found at i:806294 original size:23 final size:23
Alignment explanation
Indices: 806247--806296 Score: 75
Period size: 24 Copynumber: 2.2 Consensus size: 23
806237 TTTCTTTCGA
806247 TTTTTGTTCTTTTATTTTTTCCT
1 TTTTTGTTCTTTTATTTTTTCCT
*
806270 TTTTTGCTTCTTTTCTTTTTT-CT
1 TTTTTG-TTCTTTTATTTTTTCCT
806293 TTTT
1 TTTT
806297 GCCCTTTTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 12 0.48
24 13 0.52
ACGTcount: A:0.02, C:0.14, G:0.04, T:0.80
Consensus pattern (23 bp):
TTTTTGTTCTTTTATTTTTTCCT
Found at i:806305 original size:31 final size:28
Alignment explanation
Indices: 806253--806310 Score: 71
Period size: 30 Copynumber: 2.0 Consensus size: 28
806243 TCGATTTTTG
*
806253 TTCTTTTATTTTTTCCTTTTTTGCTTCTT
1 TTCTTTTATTTTTTCCCTTTTTG-TTCTT
*
806282 TTCTTTTTTCTTTTTGCCCTTTTTGTTCT
1 TTCTTTTAT-TTTTT-CCCTTTTTGTTCT
806311 GATTGAATCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 8 0.32
30 9 0.36
31 8 0.32
ACGTcount: A:0.02, C:0.19, G:0.05, T:0.74
Consensus pattern (28 bp):
TTCTTTTATTTTTTCCCTTTTTGTTCTT
Found at i:810925 original size:33 final size:33
Alignment explanation
Indices: 810868--810938 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 33
810858 TAAATAAAAC
810868 AAATAAACAAAGTACGAATAATATATATATATATAAT
1 AAATAAACAAAGTAC-AATAATATATA-A-AT-TAAT
810905 AAATAAA-AAAGTA-AAT-ATATATAAATTAAT
1 AAATAAACAAAGTACAATAATATATAAATTAAT
810935 AAAT
1 AAAT
810939 TAAATGACGA
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
30 8 0.24
31 2 0.06
32 1 0.03
33 7 0.21
34 3 0.09
36 6 0.18
37 7 0.21
ACGTcount: A:0.63, C:0.03, G:0.04, T:0.30
Consensus pattern (33 bp):
AAATAAACAAAGTACAATAATATATAAATTAAT
Found at i:810943 original size:35 final size:35
Alignment explanation
Indices: 810888--810972 Score: 83
Period size: 35 Copynumber: 2.5 Consensus size: 35
810878 AGTACGAATA
810888 ATATATAT-AT-ATATAA-TAAAT-A-AAAAAGTAA-
1 ATATATATAATAATA-AATTAAATGACAAAAAG-AAC
*
810919 ATATATATAAATTAATAAATTAAATGACGAAAAGAAC
1 ATATATAT-AA-TAATAAATTAAATGACAAAAAGAAC
810956 ATATATATAATAATAAA
1 ATATATATAATAATAAA
810973 GATAAAGTAA
Statistics
Matches: 45, Mismatches: 1, Indels: 12
0.78 0.02 0.21
Matches are distributed among these distances:
31 8 0.18
33 1 0.02
34 3 0.07
35 15 0.33
36 5 0.11
37 13 0.29
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (35 bp):
ATATATATAATAATAAATTAAATGACAAAAAGAAC
Found at i:811182 original size:2 final size:2
Alignment explanation
Indices: 811136--811163 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
811126 TGTGTAGAAT
811136 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
811164 ATAGTAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:811247 original size:32 final size:31
Alignment explanation
Indices: 811189--811252 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 31
811179 TATAACAACA
811189 ATAATATCAATAAAAAAAAAAAAAAATATAAT
1 ATAATATCAATAAAAAAAAAAAAAAAT-TAAT
* * *
811221 ATAATGAT-AATAAAAAATATAGAAAATTAAT
1 ATAAT-ATCAATAAAAAAAAAAAAAAATTAAT
811252 A
1 A
811253 GAAAAATATG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
31 5 0.18
32 21 0.75
33 2 0.07
ACGTcount: A:0.70, C:0.02, G:0.03, T:0.25
Consensus pattern (31 bp):
ATAATATCAATAAAAAAAAAAAAAAATTAAT
Found at i:811272 original size:23 final size:23
Alignment explanation
Indices: 811209--811277 Score: 69
Period size: 21 Copynumber: 3.2 Consensus size: 23
811199 TAAAAAAAAA
*
811209 AAAAAATATAATATAATGA-TAAT
1 AAAAAATATAGTATAAT-ATTAAT
811232 AAAAAATATAG-A-AA-ATTAAT
1 AAAAAATATAGTATAATATTAAT
811252 AGAAAAATAT-GTATAATATT-AT
1 A-AAAAATATAGTATAATATTAAT
811274 AAAA
1 AAAA
811278 TATAGCACTT
Statistics
Matches: 40, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
19 1 0.03
20 6 0.15
21 14 0.35
22 6 0.15
23 13 0.32
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (23 bp):
AAAAAATATAGTATAATATTAAT
Found at i:811413 original size:12 final size:11
Alignment explanation
Indices: 811386--811425 Score: 55
Period size: 12 Copynumber: 3.6 Consensus size: 11
811376 TAACAAAATA
*
811386 AATAATATAA-
1 AATAATACAAG
811396 AATAATACAAG
1 AATAATACAAG
811407 TAATAATACAAG
1 -AATAATACAAG
811419 AATAATA
1 AATAATA
811426 AAAAGAAAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 9 0.33
11 7 0.26
12 11 0.41
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.25
Consensus pattern (11 bp):
AATAATACAAG
Found at i:811490 original size:20 final size:19
Alignment explanation
Indices: 811467--811604 Score: 56
Period size: 20 Copynumber: 7.1 Consensus size: 19
811457 AAAAATATAA
811467 AAAATATACATATATAATAT
1 AAAATATA-ATATATAATAT
* *
811487 AAAA-AGTAGA-ATA-AAAAG
1 AAAATA-TA-ATATATAATAT
*
811505 AAAATATAATAGTA-AAAAT
1 AAAATATAATA-TATAATAT
811524 AATAATATAATAGTAATAATA-
1 AA-AATATAATA-T-ATAATAT
** * *
811545 AAAATGCAA-AGAAAATAT
1 AAAATATAATATATAATAT
*
811563 AATATAT-ATATATATATAT
1 AAAATATAATATATA-ATAT
811582 AAATATATATATATATATATAT
1 AAA-ATATA-ATATATA-ATAT
811604 A
1 A
811605 TATTAAAAGT
Statistics
Matches: 90, Mismatches: 15, Indels: 24
0.70 0.12 0.19
Matches are distributed among these distances:
17 7 0.08
18 17 0.19
19 20 0.22
20 27 0.30
21 3 0.03
22 16 0.18
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.31
Consensus pattern (19 bp):
AAAATATAATATATAATAT
Found at i:811571 original size:2 final size:2
Alignment explanation
Indices: 811559--811607 Score: 82
Period size: 2 Copynumber: 25.0 Consensus size: 2
811549 TGCAAAGAAA
*
811559 AT AT A- AT AT AT AT AT AT AT AT AT AA AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
811600 AT AT AT AT
1 AT AT AT AT
811608 TAAAAGTATA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:812219 original size:37 final size:37
Alignment explanation
Indices: 812121--812221 Score: 148
Period size: 37 Copynumber: 2.7 Consensus size: 37
812111 GTGCTTGTGG
* * * *
812121 ATCCTATCTTTAGGAGTTTAAATCATAGTAGAACTCT
1 ATCCTATTTTTAGGAGTTTAAATCCTAGCAAAACTCT
*
812158 ATCCTATTTTTAGGAGTTTAAATCCTAGCAAAATTCT
1 ATCCTATTTTTAGGAGTTTAAATCCTAGCAAAACTCT
*
812195 ATCCTATTTTTAGGAGTTTGAATCCTA
1 ATCCTATTTTTAGGAGTTTAAATCCTA
812222 ATAAGAGGAA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.41
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTAAATCCTAGCAAAACTCT
Found at i:815540 original size:17 final size:17
Alignment explanation
Indices: 815515--815558 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
815505 ATCTGGTAAA
*
815515 AGCTAGACTCGAACTCG
1 AGCTTGACTCGAACTCG
815532 AGCTTGACTCGAACTCG
1 AGCTTGACTCGAACTCG
*
815549 AGTTTGACTC
1 AGCTTGACTC
815559 AAGATCTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (17 bp):
AGCTTGACTCGAACTCG
Found at i:816052 original size:32 final size:31
Alignment explanation
Indices: 816016--816108 Score: 109
Period size: 32 Copynumber: 2.9 Consensus size: 31
816006 CAAAATTTCT
*
816016 TAACGAGCATGAGTCGAGCAAAATTTTAAGCC
1 TAACGAGCATGAGTCGAGCAAAATTTTAA-CA
816048 TAACGAGCAATGAGTCGAGCAATAAATTTT--CA
1 TAACGAGC-ATGAGTCGAGC-A-AAATTTTAACA
**
816080 TAACGAGCACAAGTCGAGCAAAATTTTAA
1 TAACGAGCATGAGTCGAGCAAAATTTTAA
816109 TAAGCACGAG
Statistics
Matches: 53, Mismatches: 3, Indels: 11
0.79 0.04 0.16
Matches are distributed among these distances:
29 7 0.13
30 1 0.02
31 9 0.17
32 17 0.32
33 11 0.21
34 1 0.02
35 7 0.13
ACGTcount: A:0.41, C:0.17, G:0.19, T:0.23
Consensus pattern (31 bp):
TAACGAGCATGAGTCGAGCAAAATTTTAACA
Found at i:816056 original size:64 final size:64
Alignment explanation
Indices: 815984--816108 Score: 187
Period size: 64 Copynumber: 2.0 Consensus size: 64
815974 TCGGTGAGCT
* * **
815984 TAACGAGCAATGAGTAGAGGAACAAAATTTCTTAACGAGCATGAGTCGAGCAAAATTTTAAGCC
1 TAACGAGCAATGAGTAGAGCAACAAAATTTCATAACGAGCACAAGTCGAGCAAAATTTTAAGCC
* * *
816048 TAACGAGCAATGAGTCGAGCAATAAATTTTCATAACGAGCACAAGTCGAGCAAAATTTTAA
1 TAACGAGCAATGAGTAGAGCAACAAAATTTCATAACGAGCACAAGTCGAGCAAAATTTTAA
816109 TAAGCACGAG
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
64 54 1.00
ACGTcount: A:0.42, C:0.16, G:0.20, T:0.22
Consensus pattern (64 bp):
TAACGAGCAATGAGTAGAGCAACAAAATTTCATAACGAGCACAAGTCGAGCAAAATTTTAAGCC
Found at i:816858 original size:26 final size:26
Alignment explanation
Indices: 816829--816878 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
816819 ATAAACGAAC
*
816829 ATGTTCAGAAACACTAAATGAATCGA
1 ATGTTCACAAACACTAAATGAATCGA
816855 ATGTTCACAAACACTAAATGAATC
1 ATGTTCACAAACACTAAATGAATC
816879 AAATATGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.46, C:0.18, G:0.12, T:0.24
Consensus pattern (26 bp):
ATGTTCACAAACACTAAATGAATCGA
Found at i:819859 original size:2 final size:2
Alignment explanation
Indices: 819852--819906 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
819842 GGTCCAACTT
819852 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
819894 TA TA TA TA TA TA T
1 TA TA TA TA TA TA T
819907 GTATGTTATT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:820554 original size:23 final size:23
Alignment explanation
Indices: 820519--820578 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 23
820509 ATCAAGCACA
*
820519 ATAACATATTAGGTAGCACTTAT
1 ATAACATAATAGGTAGCACTTAT
* **
820542 ATAACGTAATAGGTAGCGTTTAT
1 ATAACATAATAGGTAGCACTTAT
* *
820565 ATAATAAAATAGGT
1 ATAACATAATAGGT
820579 TAATTACTTA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.42, C:0.08, G:0.17, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAGCACTTAT
Found at i:820672 original size:158 final size:158
Alignment explanation
Indices: 820384--820713 Score: 507
Period size: 158 Copynumber: 2.1 Consensus size: 158
820374 ATCAAGCACA
* * * *
820384 ATAACATATTAGGTTGCGCTTATATAATAAAATAGGTTAATTACTCAATTTGTTATTACAACATA
1 ATAACGTAATAGGTAGCGCTTATATAATAAAATAGGTTAATTACTCAATTTGTTATCACAACATA
* *
820449 TTAGATAAACACCTAAAATGTTACCAAGGATAACATAACCAGTTAATTACCGTTAATATTATCAA
66 TTAGATAAACACCTAAAATGTTACCAAGGATAACATAACCAGTTAATTACCGTAAACATTATCAA
820514 GCACAATAACATATTAGGTAGCACTTAT
131 GCACAATAACATATTAGGTAGCACTTAT
* *
820542 ATAACGTAATAGGTAGCGTTTATATAATAAAATAGGTTAATTACTTAATTTGTTATCACAACATA
1 ATAACGTAATAGGTAGCGCTTATATAATAAAATAGGTTAATTACTCAATTTGTTATCACAACATA
* ** * * *
820607 TTAGGTAAACGTCTAAAATGTTACCAATGATAACATAACCGGTTAATTACTGTAAACATTATCAA
66 TTAGATAAACACCTAAAATGTTACCAAGGATAACATAACCAGTTAATTACCGTAAACATTATCAA
* *
820672 GCATAATAACATATTAGGTAGCGCTTAT
131 GCACAATAACATATTAGGTAGCACTTAT
*
820700 GTAACGTAATAGGT
1 ATAACGTAATAGGT
820714 TGCACGTTAT
Statistics
Matches: 155, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
158 155 1.00
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33
Consensus pattern (158 bp):
ATAACGTAATAGGTAGCGCTTATATAATAAAATAGGTTAATTACTCAATTTGTTATCACAACATA
TTAGATAAACACCTAAAATGTTACCAAGGATAACATAACCAGTTAATTACCGTAAACATTATCAA
GCACAATAACATATTAGGTAGCACTTAT
Found at i:821025 original size:2 final size:2
Alignment explanation
Indices: 821018--821070 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
821008 TATAAGTATG
821018 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
821060 AT AT AT AT AT A
1 AT AT AT AT AT A
821071 ATGTGTGTGC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:823437 original size:183 final size:183
Alignment explanation
Indices: 823109--823763 Score: 895
Period size: 183 Copynumber: 3.6 Consensus size: 183
823099 TTATTAAAGT
* * *
823109 ATCGATACATTCAACATATCCGGTAGAGCTTTACCGGTTTTGTCATAATGAAACCGATTTTGTCA
1 ATCGATACATTCAACATATCCGGTAGCGCTTTACCGGTTTTGTCATAATGAAACCGGTTTTATCA
* * * * * *
823174 TATTTTTACATGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGATACTTTATAGGCT
66 TATTTTTACCTATTATATTGTTATGTATCGATACATTTTTATAAATTATCGATACTTTTTAGGCG
* * * *
823239 CTATTACTGCTTTTCTTTTAAATTCGAAAAGTGTCGATATTTATTTAAATGGA
131 CTAGTACTACTTTTCTTTTAAATTCCAAAAGTGTCGATATTTATTTCAATGGA
*
823292 ATCGATACATTCAACATATCCGATAGCGCTTTACCGGTTTT-TCATAATGAAAACCGGTTTTATC
1 ATCGATACATTCAACATATCCGGTAGCGCTTTACCGGTTTTGTCATAATG-AAACCGGTTTTATC
* *
823356 ATATTTTTACCTATTATATTGTTGTGTATCTATACATTTTTATAAATTATCGATACTTTTTAGGC
65 ATATTTTTACCTATTATATTGTTATGTATCGATACATTTTTATAAATTATCGATACTTTTTAGGC
* * * **
823421 GCTAGTGCTACTTTTCTTTTAAATTCCAAAAATGTCGATACTTATTTCAATTAA
130 GCTAGTACTACTTTTCTTTTAAATTCCAAAAGTGTCGATATTTATTTCAATGGA
* ** * **
823475 ATCGATACTTTCAACATATCTTGTAGCGCTTTACCGGTTTTGTCACAATGAAACCATTTTTATCA
1 ATCGATACATTCAACATATCCGGTAGCGCTTTACCGGTTTTGTCATAATGAAACCGGTTTTATCA
* * * **
823540 TATTTTTACCTTTTATATTGTTGTGTATCGATACATTTTTATAAATTTTTAATACTTTTTAGGCG
66 TATTTTTACCTATTATATTGTTATGTATCGATACATTTTTATAAATTATCGATACTTTTTAGGCG
*
823605 CTAGTACTACTTTTCTTTTAAATTCCAAAAGTGTGGATATTTATTTCAATGTG-
131 CTAGTACTACTTTTCTTTTAAATTCCAAAAGTGTCGATATTTATTTCAATG-GA
** * * *
823658 ATTAATACTTTCAACATATCCGGTAGCGCTTTACCGGTTTTGTCATATTG-AACCGGTTTTCTCA
1 ATCGATACATTCAACATATCCGGTAGCGCTTTACCGGTTTTGTCATAATGAAACCGGTTTTATCA
* *
823722 TA-TTTTACCTAATATATTGTTATGTATGGATACATATTTTAT
66 TATTTTTACCTATTATATTGTTATGTATCGATACAT-TTTTAT
823764 TTGTATCGAT
Statistics
Matches: 416, Mismatches: 52, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
181 29 0.07
182 27 0.06
183 353 0.85
184 7 0.02
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.44
Consensus pattern (183 bp):
ATCGATACATTCAACATATCCGGTAGCGCTTTACCGGTTTTGTCATAATGAAACCGGTTTTATCA
TATTTTTACCTATTATATTGTTATGTATCGATACATTTTTATAAATTATCGATACTTTTTAGGCG
CTAGTACTACTTTTCTTTTAAATTCCAAAAGTGTCGATATTTATTTCAATGGA
Found at i:825062 original size:13 final size:13
Alignment explanation
Indices: 825044--825069 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
825034 TCATATAATC
825044 TAAAAATAAAATA
1 TAAAAATAAAATA
825057 TAAAAATAAAATA
1 TAAAAATAAAATA
825070 AATCTATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (13 bp):
TAAAAATAAAATA
Found at i:833042 original size:21 final size:21
Alignment explanation
Indices: 833016--833084 Score: 129
Period size: 21 Copynumber: 3.3 Consensus size: 21
833006 GGTCCTTTGG
833016 GACATATATGACGTCATTAGA
1 GACATATATGACGTCATTAGA
833037 GACATATATGACGTCATTAGA
1 GACATATATGACGTCATTAGA
*
833058 GACATATATGACGTCATTCGA
1 GACATATATGACGTCATTAGA
833079 GACATA
1 GACATA
833085 GATTTCACAT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
21 47 1.00
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.28
Consensus pattern (21 bp):
GACATATATGACGTCATTAGA
Found at i:835716 original size:41 final size:42
Alignment explanation
Indices: 835623--835719 Score: 106
Period size: 41 Copynumber: 2.3 Consensus size: 42
835613 ATCAATAAGT
* * * * * *
835623 CTTTCGGCATGATGATTAAATCCTTCGGGTCATCTGTCAGTC
1 CTTTGGGCAAGATGATTAAATCCTTCAGGCCATCTGTAAGAC
* * *
835665 TTTTGAGCAAGATGA-TAAGTCCTTCAGGCCATCTGTAAGAC
1 CTTTGGGCAAGATGATTAAATCCTTCAGGCCATCTGTAAGAC
835706 CTTTGGGCAAGATG
1 CTTTGGGCAAGATG
835720 TTTTCACGTG
Statistics
Matches: 44, Mismatches: 11, Indels: 1
0.79 0.20 0.02
Matches are distributed among these distances:
41 33 0.75
42 11 0.25
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.32
Consensus pattern (42 bp):
CTTTGGGCAAGATGATTAAATCCTTCAGGCCATCTGTAAGAC
Found at i:835744 original size:257 final size:257
Alignment explanation
Indices: 835079--835820 Score: 1094
Period size: 258 Copynumber: 2.9 Consensus size: 257
835069 AGTTTCTTAC
*
835079 TTAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGTATGATGATTAAATCCTCTC-GGTCATC
1 TTAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCT-TCGGGTCATC
* ** * *
835143 TGTCAGTATTTCAAGAAAAATGATAAGTCCTTCGAGCCATCTATAAGACCTTCGGGCAAGATGTT
65 TGTCAGTCTTTTGAGCAAGATGATAAGTCCTTCG-GCCATCTATAAGACCTTCGGGCAAGATGTT
* * * *
835208 TTCACGTGATTTTTGAAAAACGAGAAAGCGATTTTTAAAGTTTCACATTTAATGTTTTTAGAAAA
129 TTCACGTGATTTTCGAAAAATGAGAAAGCGATTTTTAAAGTTTCTCATTTAATATTTTTAGAAAA
*
835273 TGAAATTTTTGAAAAGTAAGAAAGTGATTTCCAAAGTTTCTTACCTAGTAAACTATTTCCAAAA
194 TGAAATTTTTGAAAAGTAAGAAAGCGATTTCCAAAGTTTCTTACCTAGTAAACTATTTCCAAAA
** *
835337 TTAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGGCGATTAAATCCTTCGGGTCATCA
1 TTAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATCT
* ** * * *
835402 GTCACTCTTTTGAGCAAGATGACGAGTCCTTCGGGCCATCTATAAGACCTTCAGGAAATATGTTT
66 GTCAGTCTTTTGAGCAAGATGATAAGTCCTTC-GGCCATCTATAAGACCTTCGGGCAAGATGTTT
*
835467 TCACATGATTTTCGAAAAATGAGAAAGCGATTTTTAAAGTTTCTCATTT-ATATTTTTAGAAAAT
130 TCACGTGATTTTCGAAAAATGAGAAAGCGATTTTTAAAGTTTCTCATTTAATATTTTTAGAAAAT
**
835531 GAAATTTTTGAAAAGTAAGAAAGCGATTTCCAAAGTTTCTTACCTAGTAAACTATTTTTAAAA
195 GAAATTTTTGAAAAGTAAGAAAGCGATTTCCAAAGTTTCTTACCTAGTAAACTATTTCCAAAA
* *
835594 TTAGTAAGTCCTTTGGGCCATCAATAAGTCTTTCG-GCATGATGATTAAATCCTTCGGGTCATCT
1 TTAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATCT
* *
835658 GTCAGTCTTTTGAGCAAGATGATAAGTCCTTCAGGCCATCTGTAAGACCTTTGGGCAAGATGTTT
66 GTCAGTCTTTTGAGCAAGATGATAAGTCCTTC-GGCCATCTATAAGACCTTCGGGCAAGATGTTT
* * * *
835723 TCACGTGATTTTCAAAAAAATGAGAAAGCAATTTTTAAAGTTTCTCATTTAATCTTTTTTATAAA
130 TCACGTGATTTTC-GAAAAATGAGAAAGCGATTTTTAAAGTTTCTCATTTAAT-ATTTTTAGAAA
** * *
835788 ATGATTTTTTTGAAAAGTAAGAAAACTATTTCC
193 ATGAAATTTTTGAAAAGTAAGAAAGCGATTTCC
835821 CAAATTAGTA
Statistics
Matches: 433, Mismatches: 46, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
256 94 0.22
257 143 0.33
258 157 0.36
259 39 0.09
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (257 bp):
TTAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGATTAAATCCTTCGGGTCATCT
GTCAGTCTTTTGAGCAAGATGATAAGTCCTTCGGCCATCTATAAGACCTTCGGGCAAGATGTTTT
CACGTGATTTTCGAAAAATGAGAAAGCGATTTTTAAAGTTTCTCATTTAATATTTTTAGAAAATG
AAATTTTTGAAAAGTAAGAAAGCGATTTCCAAAGTTTCTTACCTAGTAAACTATTTCCAAAA
Found at i:835903 original size:42 final size:41
Alignment explanation
Indices: 835833--835929 Score: 104
Period size: 42 Copynumber: 2.3 Consensus size: 41
835823 AATTAGTAAG
* * *
835833 TCCTTTGGGTCATCAATATGTCTCTCGAGCATGATGATTAAA
1 TCCTTCGGGTCATCAATAAGTCTCTCGAGCAAGATGA-TAAA
* * * *
835875 TCCTTCGGGTCATCTATAAGTCTTTCGAGTAAGATGATAAG
1 TCCTTCGGGTCATCAATAAGTCTCTCGAGCAAGATGATAAA
* *
835916 TCATTCGGGCCATC
1 TCCTTCGGGTCATC
835930 CGTAAGACCT
Statistics
Matches: 46, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
41 15 0.33
42 31 0.67
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (41 bp):
TCCTTCGGGTCATCAATAAGTCTCTCGAGCAAGATGATAAA
Found at i:836668 original size:56 final size:57
Alignment explanation
Indices: 836602--836760 Score: 234
Period size: 56 Copynumber: 2.8 Consensus size: 57
836592 GCGAAGTGAA
* * *
836602 TCACAAAGATTTCTCGAGTATTATCTCTCTGAAAGAAGAGTTGAGCAGT-CCCATTT
1 TCACAAAGATTTCTCGAGTCTTATCTCCCTGAAAGAAGAGTAGAGCAGTACCCATTT
*
836658 TCACAAAGATTTCTCGAGTCTTATCTCCCTGAAAGAAGAGTAAAGCA-TACCCATTT
1 TCACAAAGATTTCTCGAGTCTTATCTCCCTGAAAGAAGAGTAGAGCAGTACCCATTT
* * *
836714 TC-GAAAGATTTCTCAAGTCTTATCTCCCTGAAAGAAGAATAGAGCAG
1 TCACAAAGATTTCTCGAGTCTTATCTCCCTGAAAGAAGAGTAGAGCAG
836761 GCTCGTTTTC
Statistics
Matches: 93, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
55 41 0.44
56 52 0.56
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (57 bp):
TCACAAAGATTTCTCGAGTCTTATCTCCCTGAAAGAAGAGTAGAGCAGTACCCATTT
Found at i:836854 original size:82 final size:82
Alignment explanation
Indices: 836726--836925 Score: 276
Period size: 82 Copynumber: 2.5 Consensus size: 82
836716 GAAAGATTTC
* * * * * * *
836726 TCAAGTCTTATCT-CCCTGAAAGAAGAATAGAGCAGGCTCGTTTTCCAAAATTGATTTGACTACC
1 TCAAGTCTGATCTCCCCTGAAAGAAGAGTGGAGCAGACCCGTCTTCCAAAATTGATCTGACTACC
*
836790 CAAAAAAGAGGAACATA
66 CAAAAAAGAGGAACAGA
*
836807 TCAAGTCTGATCTCCCCTGAAAGAATAGTGGAGCAGACCCGTCTTCCAAAATTGATCTGACTACC
1 TCAAGTCTGATCTCCCCTGAAAGAAGAGTGGAGCAGACCCGTCTTCCAAAATTGATCTGACTACC
** *
836872 TGAAAAAGAGGAATAGA
66 CAAAAAAGAGGAACAGA
*
836889 TCAAGTCTGATCTCCCCTGAAAGAAGAGTGGAACAGA
1 TCAAGTCTGATCTCCCCTGAAAGAAGAGTGGAGCAGA
836926 TTTCCCATTG
Statistics
Matches: 104, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
81 12 0.12
82 92 0.88
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.23
Consensus pattern (82 bp):
TCAAGTCTGATCTCCCCTGAAAGAAGAGTGGAGCAGACCCGTCTTCCAAAATTGATCTGACTACC
CAAAAAAGAGGAACAGA
Found at i:837835 original size:16 final size:16
Alignment explanation
Indices: 837814--837847 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
837804 TCTTCAAAGT
*
837814 TATGGCTAAGTGGAGA
1 TATGGCTAAGTGAAGA
837830 TATGGCTAAGTGAAGA
1 TATGGCTAAGTGAAGA
837846 TA
1 TA
837848 AGCATCTTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.32, T:0.26
Consensus pattern (16 bp):
TATGGCTAAGTGAAGA
Found at i:841926 original size:16 final size:16
Alignment explanation
Indices: 841905--841935 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
841895 CTTCAAAGTG
841905 ATGGCTAAGTGGAGAT
1 ATGGCTAAGTGGAGAT
841921 ATGGCTAAGTGGAGA
1 ATGGCTAAGTGGAGA
841936 CAAGCATCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.06, G:0.39, T:0.23
Consensus pattern (16 bp):
ATGGCTAAGTGGAGAT
Found at i:844412 original size:18 final size:17
Alignment explanation
Indices: 844389--844431 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 17
844379 TGAATAAAAT
844389 AATATTTTTTATGTTTTA
1 AATATTTTTTAT-TTTTA
844407 AATATTTTTTTATTTTTA
1 AATA-TTTTTTATTTTTA
*
844425 TATATTT
1 AATATTT
844432 ATTGTATCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 3 0.13
18 12 0.52
19 8 0.35
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (17 bp):
AATATTTTTTATTTTTA
Found at i:845565 original size:27 final size:28
Alignment explanation
Indices: 845521--845574 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
845511 AATAAATTTA
*
845521 ATTTAAATTAAAAAATATATATTTATAT
1 ATTTAAATTAAAAAATATATATATATAT
* *
845549 ATTT-AATTTAAATATATATATATATA
1 ATTTAAATTAAAAAATATATATATATA
845575 CTCGGCCCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 19 0.83
28 4 0.17
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (28 bp):
ATTTAAATTAAAAAATATATATATATAT
Found at i:845607 original size:12 final size:12
Alignment explanation
Indices: 845592--845626 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
845582 CGATTCTCGG
845592 CCCAATACCCGA
1 CCCAATACCCGA
*
845604 CCCAATACCCGG
1 CCCAATACCCGA
845616 CCCAATACCCG
1 CCCAATACCCG
845627 TTTAAATAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.29, C:0.51, G:0.11, T:0.09
Consensus pattern (12 bp):
CCCAATACCCGA
Found at i:847010 original size:123 final size:123
Alignment explanation
Indices: 846669--847010 Score: 388
Period size: 127 Copynumber: 2.7 Consensus size: 123
846659 ATAATTCTAA
* *
846669 GGGAGAAAATGATAATATCTAATTATTTCTAATCGAGAATAAATGATCTCT-AAGCCTTAAAGCA
1 GGGAGAAAATGATAATATCTAATTATTTC-AATCGAGAATAAATGACCTCTCATGCCTTAAAGCA
* * * * *
846733 ATCATTTATTACTCCAACCGAAAAGAGATATATCACTGTTTCATCTTAAAATTCAATATAGGTTC
65 GTCATTTATTACTCCAACC----AGA-A-ATATCACTATTACATCTTAAAAATCAATATAGATTC
** * * *
846798 --GAGTGAACGATAATATCTAATGATTTTCAATCGAGAATGAATG-CCTCTCATGCCTTAAAGCA
1 GGGAGAAAATGATAATATCTAATTA-TTTCAATCGAGAATAAATGACCTCTCATGCCTTAAAGCA
* * ** * *
846860 GTCATTTATTAATCGAAATGAAGAAATATCACTATTACGTCTTAAAAATCAATATTGATTC
65 GTCATTTATTACTC-CAA-CCAGAAATATCACTATTACATCTTAAAAATCAATATAGATTC
846921 GGGAGAAAATGATAATATCTAATTATTTCAAATCGAGAATAAATGACCTCTCATGCCTTAAAGCA
1 GGGAGAAAATGATAATATCTAATTATTTC-AATCGAGAATAAATGACCTCTCATGCCTTAAAGCA
846986 GTCATTTATTACTCCAA-CAGAAATA
65 GTCATTTATTACTCCAACCAGAAATA
847011 AAAAGATATT
Statistics
Matches: 179, Mismatches: 26, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
123 37 0.21
124 5 0.03
125 38 0.21
126 36 0.20
127 57 0.32
128 6 0.03
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (123 bp):
GGGAGAAAATGATAATATCTAATTATTTCAATCGAGAATAAATGACCTCTCATGCCTTAAAGCAG
TCATTTATTACTCCAACCAGAAATATCACTATTACATCTTAAAAATCAATATAGATTC
Found at i:847661 original size:29 final size:28
Alignment explanation
Indices: 847621--847690 Score: 88
Period size: 29 Copynumber: 2.5 Consensus size: 28
847611 ACAAAGGGTA
*
847621 AAAATAAATAAAA-CACGTGGACCAAATT
1 AAAATAAATAAAATCACATGG-CCAAATT
*
847649 AAAATAAAATAAAATCGCATGGCCAAATT
1 AAAAT-AAATAAAATCACATGGCCAAATT
*
847678 AAATTAAATAAAA
1 AAAATAAATAAAA
847691 AATATATTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 13 0.35
29 19 0.51
30 5 0.14
ACGTcount: A:0.60, C:0.11, G:0.09, T:0.20
Consensus pattern (28 bp):
AAAATAAATAAAATCACATGGCCAAATT
Found at i:848076 original size:107 final size:108
Alignment explanation
Indices: 847867--848065 Score: 244
Period size: 107 Copynumber: 1.9 Consensus size: 108
847857 TAAAAACATG
* *
847867 CTAAACATAGAGGGACTAAAAAGTAAATAACCCTAAATATATAACATGCATAAAAATAGGTAAAT
1 CTAAACATAGAGGGACTAAAAAGTAAATAACCCTAAAAATATAACATGCACAAAAATAGGTAAAT
*
847932 AATAGTTTCAGTCCCTACAAGTGACCAACATGCAAAAACACAA
66 AATAGTTTCAGTCACTACAAGTGACCAACATGCAAAAACACAA
* * * * * *
847975 CTAAAC-TAGGGGGACTAAACATTAAATAACCCTAAAAATA-AAGCATTCACGAAAATGGGTAAA
1 CTAAACATAGAGGGACTAAAAAGTAAATAACCCTAAAAATATAA-CATGCACAAAAATAGGTAAA
* *
848038 T-ATCATGTTTGA-TCACTACAGGTGACCA
65 TAAT-A-GTTTCAGTCACTACAAGTGACCA
848066 CTTTGCAAAA
Statistics
Matches: 77, Mismatches: 11, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
106 4 0.05
107 62 0.81
108 11 0.14
ACGTcount: A:0.47, C:0.18, G:0.14, T:0.22
Consensus pattern (108 bp):
CTAAACATAGAGGGACTAAAAAGTAAATAACCCTAAAAATATAACATGCACAAAAATAGGTAAAT
AATAGTTTCAGTCACTACAAGTGACCAACATGCAAAAACACAA
Found at i:848908 original size:357 final size:357
Alignment explanation
Indices: 848253--848954 Score: 1307
Period size: 357 Copynumber: 2.0 Consensus size: 357
848243 CATTTCCAAC
*
848253 CACCATGTGTGGTGGTCGGAGCTCCGAAATGAACCAAAAATTAGCCTACTATTTTCTCTTCACTC
1 CACCATGTGTGGTGGTCGGAGCTCCGAAATGAACCAAAAATTAGCCTACTATCTTCTCTTCACTC
848318 TCCTAAATCTAGATCTAGGACTTAAATCACCCAATAATACCCCTAAATACCCCGAAAAACTCCCT
66 TCCTAAATCTAGATCTAGGACTTAAATCACCCAATAATACCCCTAAATACCCCGAAAAACTCCCT
* * *
848383 CAACCCTTCGGCTACCCATTTTCTAGTGACCTCAAAACAAACTAAAATCGAACCTAAAACCTCCC
131 CAACCCTTCGGCTACCCATTTTCCAATGACCTCAAAACAAACTAAAATCAAACCTAAAACCTCCC
* *
848448 AAAAGCTTCGATCTACCCGCCAAACACACACTTCGACTACTCCTCATCAGTTAAACTACTTAATC
196 AAAAGCTCCGATCTACCCGCCAAACACACACTTCGACTACTCCTCATCAGGTAAACTACTTAATC
848513 TCCTTGTTTCTGTTTTGGTTTGCAACCTATGTTTTTTTAAATGCTTTTTTGGTTTCGAACACCGA
261 TCCTTGTTTCTGTTTTGGTTTGCAACCTATGTTTTTTTAAATGCTTTTTTGGTTTCGAACACCGA
848578 AAATAAATATATAAAAATACGTCCTAAATGAA
326 AAATAAATATATAAAAATACGTCCTAAATGAA
*
848610 CACCATGTGTGGTGGTCGGAGCTTCGAAATGAACCAAAAATTAGCCTACTATCTTCTCTTCACTC
1 CACCATGTGTGGTGGTCGGAGCTCCGAAATGAACCAAAAATTAGCCTACTATCTTCTCTTCACTC
848675 TCCTAAATCTAGATCTAGGACTTAAATCACCCAATAATACCCCTAAATACCCC-AAAAACTCCCT
66 TCCTAAATCTAGATCTAGGACTTAAATCACCCAATAATACCCCTAAATACCCCGAAAAACTCCCT
848739 CAACCCTTCGGCTACCCATTTTCCAATGACCTCAAAAACAAACTAAAATCAAACCTAAAACCTCC
131 CAACCCTTCGGCTACCCATTTTCCAATGACCTC-AAAACAAACTAAAATCAAACCTAAAACCTCC
848804 CAAAAGCTCCGATCTACCCGCCAAACACACACTTCGACTACTCCTCATCAGGTAAACTACTTAAT
195 CAAAAGCTCCGATCTACCCGCCAAACACACACTTCGACTACTCCTCATCAGGTAAACTACTTAAT
* *
848869 CTCTTTGTTTTTGTTTTGGTTTGCAACCTATGTTTTTTTAAATGCTTTTTTGGTTTCGAACACCG
260 CTCCTTGTTTCTGTTTTGGTTTGCAACCTATGTTTTTTTAAATGCTTTTTTGGTTTCGAACACCG
848934 AAAATAAATATATAAAAATAC
325 AAAATAAATATATAAAAATAC
848955 CTCGAATATT
Statistics
Matches: 335, Mismatches: 9, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
356 42 0.13
357 293 0.87
ACGTcount: A:0.33, C:0.27, G:0.11, T:0.29
Consensus pattern (357 bp):
CACCATGTGTGGTGGTCGGAGCTCCGAAATGAACCAAAAATTAGCCTACTATCTTCTCTTCACTC
TCCTAAATCTAGATCTAGGACTTAAATCACCCAATAATACCCCTAAATACCCCGAAAAACTCCCT
CAACCCTTCGGCTACCCATTTTCCAATGACCTCAAAACAAACTAAAATCAAACCTAAAACCTCCC
AAAAGCTCCGATCTACCCGCCAAACACACACTTCGACTACTCCTCATCAGGTAAACTACTTAATC
TCCTTGTTTCTGTTTTGGTTTGCAACCTATGTTTTTTTAAATGCTTTTTTGGTTTCGAACACCGA
AAATAAATATATAAAAATACGTCCTAAATGAA
Found at i:849444 original size:3 final size:3
Alignment explanation
Indices: 849436--849489 Score: 92
Period size: 3 Copynumber: 18.3 Consensus size: 3
849426 AAGCACAAAA
*
849436 AAT AAT AAT AAT AA- CAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
849483 AAT AAT A
1 AAT AAT A
849490 GTAGTAGCAG
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
2 1 0.02
3 47 0.98
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:849722 original size:13 final size:13
Alignment explanation
Indices: 849701--849735 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
849691 ACAAATCTTA
*
849701 TTTTATAATTAAT
1 TTTTATAATAAAT
*
849714 TTTTTTAATAAAT
1 TTTTATAATAAAT
849727 TTTTATAAT
1 TTTTATAAT
849736 GTTATGATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
TTTTATAATAAAT
Found at i:863003 original size:173 final size:174
Alignment explanation
Indices: 862713--863028 Score: 526
Period size: 173 Copynumber: 1.8 Consensus size: 174
862703 TTAAAATACC
* * * *
862713 TAAGCATAAATTACCGTGTGGTATATGGAAGCATTATAAATATATGTTAATTACTAATGTAAAAT
1 TAAGCATAAATTACCGTATGATATATGGAAGCATTATAAATATATGCTAATTACTAAGGTAAAAT
* *
862778 AGTAAGGGTAAGTTAAAGCAAGATATGAATATGCTTACCAAACATAACTATTAAATATGGAAGAT
66 AGTAAGGGTAAGTTAAAGCAAAATATGAATATACTTACCAAACATAACTATTAAATATGGAAGAT
862843 AATAAATAGCAAGAGCTGAGTAAAAGGATATATATATATATAAA
131 AATAAATAGCAAGAGCTGAGTAAAAGGATATATATATATATAAA
* *
862887 TAAGCATAAATTATCGTATGATATATGGAA-CATTATAAATATATGCTAATTATTAAGGTAAAAT
1 TAAGCATAAATTACCGTATGATATATGGAAGCATTATAAATATATGCTAATTACTAAGGTAAAAT
* * *
862951 AGTAAGGGTAAGTTGAAGCAAAATATGAATATATTTACCAAATATAACTATTAAATATGGAAGAT
66 AGTAAGGGTAAGTTAAAGCAAAATATGAATATACTTACCAAACATAACTATTAAATATGGAAGAT
863016 AATAAATAGCAAG
131 AATAAATAGCAAG
863029 GGTTAAATAA
Statistics
Matches: 131, Mismatches: 11, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
173 104 0.79
174 27 0.21
ACGTcount: A:0.47, C:0.07, G:0.16, T:0.30
Consensus pattern (174 bp):
TAAGCATAAATTACCGTATGATATATGGAAGCATTATAAATATATGCTAATTACTAAGGTAAAAT
AGTAAGGGTAAGTTAAAGCAAAATATGAATATACTTACCAAACATAACTATTAAATATGGAAGAT
AATAAATAGCAAGAGCTGAGTAAAAGGATATATATATATATAAA
Found at i:864772 original size:23 final size:23
Alignment explanation
Indices: 864746--864789 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
864736 TATAAACTAT
*
864746 ATTTGTTCATAAAAT-TAAAAATG
1 ATTT-TTCAAAAAATATAAAAATG
*
864769 ATTTTTTAAAAAATATAAAAA
1 ATTTTTCAAAAAATATAAAAA
864790 ATAAGTGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.39
Consensus pattern (23 bp):
ATTTTTCAAAAAATATAAAAATG
Found at i:866345 original size:43 final size:43
Alignment explanation
Indices: 866146--866341 Score: 203
Period size: 43 Copynumber: 4.6 Consensus size: 43
866136 ATTTTTAACA
* * * * * **
866146 AAAAACTCCGCAATAGATATTAATATTTAGCGGGGTTTGTGTG
1 AAAAACGCCGCAATAGGTGTTGATATTTAGCGGCGTTTGTCAG
* * ** *
866189 ACAAATGCCATAATAGGTGTTGATATTTAGCGACGTTTGTCAG
1 AAAAACGCCGCAATAGGTGTTGATATTTAGCGGCGTTTGTCAG
** *
866232 AAAAACGCCGCAATAGGTGTTGATATTTAGATGCGTTTGTCAT
1 AAAAACGCCGCAATAGGTGTTGATATTTAGCGGCGTTTGTCAG
* * * *
866275 AAAAACGCCGCAATAGGTGTTGATGTTTAGCGGCATTTTTTAG
1 AAAAACGCCGCAATAGGTGTTGATATTTAGCGGCGTTTGTCAG
* *
866318 ACAAACGCCGCAGTAGGTGTTGAT
1 AAAAACGCCGCAATAGGTGTTGAT
866342 GTTTTATGGC
Statistics
Matches: 124, Mismatches: 29, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 124 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (43 bp):
AAAAACGCCGCAATAGGTGTTGATATTTAGCGGCGTTTGTCAG
Found at i:866354 original size:86 final size:86
Alignment explanation
Indices: 866200--866388 Score: 220
Period size: 86 Copynumber: 2.2 Consensus size: 86
866190 CAAATGCCAT
*
866200 AATAGGTGTTGATATTTAGCGACGTTTGTCAGAAAAACGCCGCAATAGGTGTTGATATTTAGATG
1 AATAGGTGTTGATATTTAGCGACATTTGTCAGAAAAACGCCGCAATAGGTGTTGATATTTAGATG
866265 CGTTTGTCAT-AAAAACGCCGC
66 CGTTT-TCATCAAAAACGCCGC
* * * * * * * *
866286 AATAGGTGTTGATGTTTAGCGGCATTTTTTAGACAAACGCCGCAGTAGGTGTTGATGTTT-TATG
1 AATAGGTGTTGATATTTAGCGACATTTGTCAGAAAAACGCCGCAATAGGTGTTGATATTTAGAT-
* *
866350 GCGTTTTTATCACAAACGCCGC
65 GCGTTTTCATCAAAAACGCCGC
* * *
866372 AGTATGTATTGATATTT
1 AATAGGTGTTGATATTT
866389 TGAGGCGTTT
Statistics
Matches: 86, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
85 5 0.06
86 81 0.94
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.34
Consensus pattern (86 bp):
AATAGGTGTTGATATTTAGCGACATTTGTCAGAAAAACGCCGCAATAGGTGTTGATATTTAGATG
CGTTTTCATCAAAAACGCCGC
Found at i:866410 original size:43 final size:42
Alignment explanation
Indices: 866200--866410 Score: 183
Period size: 43 Copynumber: 4.9 Consensus size: 42
866190 CAAATGCCAT
* * * *
866200 AATAGGTGTTGATATTTAGCGACGTTTGTCAGAAAAACGCCGC
1 AATAGGTGTTGATATTTAGAGGCGTTTTTC-TAAAAACGCCGC
* *
866243 AATAGGTGTTGATATTTAGATGCGTTTGTCATAAAAACGCCGC
1 AATAGGTGTTGATATTTAGAGGCGTTTTTC-TAAAAACGCCGC
* * *
866286 AATAGGTGTTGATGTTTAGCGGCATTTTT-TAGACAAACGCCGC
1 AATAGGTGTTGATATTTAGAGGCGTTTTTCTA-A-AAACGCCGC
* * * * *
866329 AGTAGGTGTTGATGTTTTA-TGGCGTTTTTATCACAAACGCCGC
1 AATAGGTGTTGAT-ATTTAGAGGCGTTTTTCT-AAAAACGCCGC
* * * *
866372 AGTATGTATTGATATTTTGAGGCGTTTTTGCTAAAAACG
1 AATAGGTGTTGATATTTAGAGGCGTTTTT-CTAAAAACG
866411 TCGGTAAAGG
Statistics
Matches: 140, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
41 2 0.01
42 4 0.03
43 127 0.91
44 6 0.04
45 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (42 bp):
AATAGGTGTTGATATTTAGAGGCGTTTTTCTAAAAACGCCGC
Found at i:866894 original size:21 final size:21
Alignment explanation
Indices: 866813--866893 Score: 81
Period size: 21 Copynumber: 3.9 Consensus size: 21
866803 GTTGATATGT
* *
866813 TGCTTCTCTCTGTGCTGCCGC
1 TGCTTCTCTCTCTGCTTCCGC
* *
866834 TGCTTCTTTCTCTGCTCCCGC
1 TGCTTCTCTCTCTGCTTCCGC
* ** *
866855 TGCTACTCTGGCTGCTTCTGC
1 TGCTTCTCTCTCTGCTTCCGC
*
866876 TGCTGCTCTCTCTGCTTC
1 TGCTTCTCTCTCTGCTTC
866894 TCTTTCTTCA
Statistics
Matches: 48, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 48 1.00
ACGTcount: A:0.01, C:0.38, G:0.20, T:0.41
Consensus pattern (21 bp):
TGCTTCTCTCTCTGCTTCCGC
Found at i:874801 original size:41 final size:41
Alignment explanation
Indices: 874754--874908 Score: 199
Period size: 41 Copynumber: 3.8 Consensus size: 41
874744 GCTATTGTTA
*
874754 TACTCTATCGCGGCGTTTCCATAATAAACGCCACTAATGTC
1 TACTCTATCGCGGCGTTTTCATAATAAACGCCACTAATGTC
* * * *
874795 TACTCTATTGCGGCGTTTTCACT-ATAAACGCCGCTATTGTTA
1 TACTCTATCGCGGCGTTTTCA-TAATAAACGCCACTAATG-TC
874837 TACTCTATCGCGG-GTTTTCATAATAAACGCCACTAATGTC
1 TACTCTATCGCGGCGTTTTCATAATAAACGCCACTAATGTC
* *
874877 TACTCTATTGCGGCGTTTTTACT-ATAAACGCC
1 TACTCTATCGCGGCGTTTTCA-TAATAAACGCC
874909 GCTATTGATT
Statistics
Matches: 98, Mismatches: 11, Indels: 10
0.82 0.09 0.08
Matches are distributed among these distances:
40 14 0.14
41 69 0.70
42 15 0.15
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.34
Consensus pattern (41 bp):
TACTCTATCGCGGCGTTTTCATAATAAACGCCACTAATGTC
Found at i:874884 original size:82 final size:83
Alignment explanation
Indices: 874737--874915 Score: 333
Period size: 82 Copynumber: 2.2 Consensus size: 83
874727 TTTGTAATCC
874737 AAACGCCGCTATTGTTATACTCTATCGCGGCGTTTCCATAATAAACGCCACTAATGTCTACTCTA
1 AAACGCCGCTATTGTTATACTCTATCGCGGCGTTTCCATAATAAACGCCACTAATGTCTACTCTA
874802 TTGCGGCGTTTTCACTAT
66 TTGCGGCGTTTTCACTAT
*
874820 AAACGCCGCTATTGTTATACTCTATCGCGG-GTTTTCATAATAAACGCCACTAATGTCTACTCTA
1 AAACGCCGCTATTGTTATACTCTATCGCGGCGTTTCCATAATAAACGCCACTAATGTCTACTCTA
*
874884 TTGCGGCGTTTTTACTAT
66 TTGCGGCGTTTTCACTAT
874902 AAACGCCGCTATTG
1 AAACGCCGCTATTG
874916 ATTAACCCTT
Statistics
Matches: 94, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
82 64 0.68
83 30 0.32
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (83 bp):
AAACGCCGCTATTGTTATACTCTATCGCGGCGTTTCCATAATAAACGCCACTAATGTCTACTCTA
TTGCGGCGTTTTCACTAT
Found at i:875099 original size:83 final size:81
Alignment explanation
Indices: 875007--875166 Score: 178
Period size: 83 Copynumber: 2.0 Consensus size: 81
874997 ATGTTAAATA
* * * *
875007 CATATGCGGCATTTCTTG-CAAAATGCCACTAATGTACGAATAAGTTGCGGCGTTTGTTACTAAA
1 CATATGCGGCATTT-TTGTCAAAACGCCACTAAAGTACGAATAAGTTGCGGCGTTTATTA-AAAA
* *
875071 ACGCCGCTATATGTGAAC
64 ACACCCCTATATGTGAAC
* * * ** *
875089 CATATTGCGGCGTTTTTGTCAAAACGCCGCTAAAGTACTAATTTGTTGTGGCGTTTATTAAAAAA
1 CATA-TGCGGCATTTTTGTCAAAACGCCACTAAAGTACGAATAAGTTGCGGCGTTTATTAAAAAA
875154 CACCCCTATATGT
65 CACCCCTATATGT
875167 CTAAAGATAA
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
82 22 0.34
83 42 0.66
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (81 bp):
CATATGCGGCATTTTTGTCAAAACGCCACTAAAGTACGAATAAGTTGCGGCGTTTATTAAAAAAC
ACCCCTATATGTGAAC
Found at i:875377 original size:190 final size:188
Alignment explanation
Indices: 875016--875462 Score: 563
Period size: 190 Copynumber: 2.4 Consensus size: 188
875006 ACATATGCGG
* * * * *
875016 CATTTCTTGCAAAATGCCACTAATGTACGAATAAGTTGCGGCGTTTGTTACTAAAACGCCGCTAT
1 CATTTTTTGCAAAACGCCACTAATGTATGAATAATTTGCGGCGTTTGTTACAAAAACGCCGCTAT
* ** * * * *
875081 ATGTGAACCATATTGCGGCGTTTTTGTCAAAACGCCGCTAAAGTACTAATTTGTTGTGGCGTTTA
66 ATGTGAACCATATTACAACATTTTTGTCAAAACACCGCTAAAGTACTAATCTGTTGTGGCGTTAA
875146 TTAAAAAACACCCCTATATGTCTAAAGATAATGACGTTTAAATAAAAAACATCTACGA
131 TTAAAAAACACCCCTATATGTCTAAAGATAATGACGTTTAAATAAAAAACATCTACGA
* * *
875204 CATTTTTTGTCAAAACGCCACTAATGATTTGAATAATTTACGGCGTTTGTTACCAAAACGCCGCT
1 CATTTTTTG-CAAAACGCCACTAATG-TATGAATAATTTGCGGCGTTTGTTACAAAAACGCCGCT
* * * **
875269 ATATGTGAACCCTCTTACAACATTTTTGTCAAAACATCGCTGTAGTACTAATCTGTTGTGGCGTT
64 ATATGTGAACCATATTACAACATTTTTGTCAAAACACCGCTAAAGTACTAATCTGTTGTGGCGTT
** ** * * *
875334 AATTAAAAAATTCCGTTATATGTCTAAAGTTAATGACGTTTAAATAAAAAACATTTACGG
129 AATTAAAAAACACCCCTATATGTCTAAAGATAATGACGTTTAAATAAAAAACATCTACGA
* * * * * *
875394 CA-TTTTTGACAAAACACCACTAAAGTATGAATTATTTGTGGTGTTTGTTTCAAAAACGCCGCTA
1 CATTTTTTG-CAAAACGCCACTAATGTATGAATAATTTGCGGCGTTTGTTACAAAAACGCCGCTA
875458 TATGT
65 TATGT
875463 CTAAAGTTAG
Statistics
Matches: 221, Mismatches: 36, Indels: 4
0.85 0.14 0.02
Matches are distributed among these distances:
188 45 0.20
189 35 0.16
190 141 0.64
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (188 bp):
CATTTTTTGCAAAACGCCACTAATGTATGAATAATTTGCGGCGTTTGTTACAAAAACGCCGCTAT
ATGTGAACCATATTACAACATTTTTGTCAAAACACCGCTAAAGTACTAATCTGTTGTGGCGTTAA
TTAAAAAACACCCCTATATGTCTAAAGATAATGACGTTTAAATAAAAAACATCTACGA
Found at i:875707 original size:19 final size:19
Alignment explanation
Indices: 875683--875721 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
875673 ATTAAATTAA
875683 ATGTATGGTTGAACCTATT
1 ATGTATGGTTGAACCTATT
875702 ATGTATGGTTGAACCTATT
1 ATGTATGGTTGAACCTATT
875721 A
1 A
875722 CGGCGTTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.41
Consensus pattern (19 bp):
ATGTATGGTTGAACCTATT
Found at i:884864 original size:30 final size:31
Alignment explanation
Indices: 884830--884888 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
884820 AATTGGATCC
* * *
884830 AAATTTACTTAAATATTC-ATTTTAGTCCAT
1 AAATTTAATCAAAAATTCAATTTTAGTCCAT
884860 AAATTTAATCAAAAATTCAATTTTAGTCC
1 AAATTTAATCAAAAATTCAATTTTAGTCC
884889 CAAGAATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.41, C:0.14, G:0.03, T:0.42
Consensus pattern (31 bp):
AAATTTAATCAAAAATTCAATTTTAGTCCAT
Found at i:887179 original size:20 final size:20
Alignment explanation
Indices: 887080--887179 Score: 69
Period size: 20 Copynumber: 4.8 Consensus size: 20
887070 CCCTTGTCCC
887080 AAAGGATCGATCCCTTTTCAAA
1 AAAGGATCGATCCC-TTT-AAA
** * *
887102 ATGGGATCGATCCCTCCATGAA
1 AAAGGATCGATCCCT--TTAAA
*
887124 TAA-GAGTCGATCCCTTCT-AA
1 AAAGGA-TCGATCCCTT-TAAA
* *
887144 AAAGGATCAATTCCTTTAAA
1 AAAGGATCGATCCCTTTAAA
887164 AAAGGATCGATCCCTT
1 AAAGGATCGATCCCTT
887180 CATTGTATGT
Statistics
Matches: 59, Mismatches: 13, Indels: 14
0.69 0.15 0.16
Matches are distributed among these distances:
19 1 0.02
20 28 0.47
21 6 0.10
22 23 0.39
23 1 0.02
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (20 bp):
AAAGGATCGATCCCTTTAAA
Found at i:889448 original size:24 final size:23
Alignment explanation
Indices: 889421--889519 Score: 67
Period size: 23 Copynumber: 4.3 Consensus size: 23
889411 CGAAGTGCCA
889421 CGTAGAATTTGT-CCTAAAGGACCG
1 CGTAGAATTT-TCCCT-AAGGACCG
*
889445 CGTAGAATTTTCCCTAAGGACCA
1 CGTAGAATTTTCCCTAAGGACCG
* * * * * * *
889468 TGTAGAAATATCCCGAATGATCA
1 CGTAGAATTTTCCCTAAGGACCG
* * *
889491 CATAG-ATTGTCCCGAAGGACCG
1 CGTAGAATTTTCCCTAAGGACCG
889513 CGTAGAA
1 CGTAGAA
889520 CCCTCGACTT
Statistics
Matches: 58, Mismatches: 15, Indels: 5
0.74 0.19 0.06
Matches are distributed among these distances:
22 16 0.28
23 29 0.50
24 13 0.22
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.23
Consensus pattern (23 bp):
CGTAGAATTTTCCCTAAGGACCG
Found at i:889472 original size:23 final size:24
Alignment explanation
Indices: 889418--889474 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 24
889408 CACCGAAGTG
889418 CCACGTAGAATTTGTCCTAAAGGA
1 CCACGTAGAATTTGTCCTAAAGGA
*
889442 CCGCGTAGAATTT-TCCCT-AAGGA
1 CCACGTAGAATTTGT-CCTAAAGGA
*
889465 CCATGTAGAA
1 CCACGTAGAA
889475 ATATCCCGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
23 14 0.48
24 15 0.52
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (24 bp):
CCACGTAGAATTTGTCCTAAAGGA
Found at i:893673 original size:18 final size:17
Alignment explanation
Indices: 893648--893713 Score: 71
Period size: 18 Copynumber: 3.6 Consensus size: 17
893638 ATCCAAAATG
893648 GGTATCGATACATGGAA
1 GGTATCGATACATGGAA
893665 GGATATCGATA-ATGTGGAA
1 GG-TATCGATACA--TGGAA
*
893684 GGGTATCGATAACGTGGAA
1 -GGTATCGAT-ACATGGAA
893703 GGTATCGATAC
1 GGTATCGATAC
893714 TACAAGCATA
Statistics
Matches: 42, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
17 5 0.12
18 17 0.40
19 17 0.40
20 3 0.07
ACGTcount: A:0.33, C:0.11, G:0.32, T:0.24
Consensus pattern (17 bp):
GGTATCGATACATGGAA
Found at i:893684 original size:19 final size:18
Alignment explanation
Indices: 893648--893712 Score: 87
Period size: 19 Copynumber: 3.6 Consensus size: 18
893638 ATCCAAAATG
*
893648 GGTATCGAT-ACATGGAA
1 GGTATCGATAACGTGGAA
*
893665 GGATATCGATAATGTGGAA
1 GG-TATCGATAACGTGGAA
893684 GGGTATCGATAACGTGGAA
1 -GGTATCGATAACGTGGAA
893703 GGTATCGATA
1 GGTATCGATA
893713 CTACAAGCAT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
17 2 0.05
18 17 0.40
19 21 0.50
20 2 0.05
ACGTcount: A:0.34, C:0.09, G:0.32, T:0.25
Consensus pattern (18 bp):
GGTATCGATAACGTGGAA
Found at i:895077 original size:28 final size:28
Alignment explanation
Indices: 895046--895124 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
895036 AGAGTCGAGG
895046 GTTATATGTGATCCTTCAAGACATATAT
1 GTTATATGTGATCCTTCAAGACATATAT
* *** *
895074 GTTATATGTGGTCCTTTGGGATATATAT
1 GTTATATGTGATCCTTCAAGACATATAT
*
895102 GTTATATGTGATCCTTCATGACA
1 GTTATATGTGATCCTTCAAGACA
895125 AATTCATATG
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.27, C:0.13, G:0.19, T:0.42
Consensus pattern (28 bp):
GTTATATGTGATCCTTCAAGACATATAT
Found at i:901177 original size:24 final size:24
Alignment explanation
Indices: 901145--901194 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
901135 ATAAACACTT
901145 TGATCAAAATCATTTTATAAAACA
1 TGATCAAAATCATTTTATAAAACA
901169 TGATCAAAATCATTTTATAAAACA
1 TGATCAAAATCATTTTATAAAACA
901193 TG
1 TG
901195 CTTTTAAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.48, C:0.12, G:0.06, T:0.34
Consensus pattern (24 bp):
TGATCAAAATCATTTTATAAAACA
Found at i:919989 original size:41 final size:41
Alignment explanation
Indices: 919911--919991 Score: 103
Period size: 41 Copynumber: 2.0 Consensus size: 41
919901 CATCATCATG
** *
919911 AAAATGTTGGACATTTTGAAGGTCCATTTTGACCAGAAATT
1 AAAATGTTGGACATTTTGAAGGTCCATTTCAAACAGAAATT
919952 AAAAT-TTGGTACATTTTGAAGG-CACATTTCAAACAGAAAT
1 AAAATGTTGG-ACATTTTGAAGGTC-CATTTCAAACAGAAAT
919992 GATCATGAGG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
40 5 0.14
41 30 0.86
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.32
Consensus pattern (41 bp):
AAAATGTTGGACATTTTGAAGGTCCATTTCAAACAGAAATT
Found at i:922235 original size:249 final size:249
Alignment explanation
Indices: 921738--922362 Score: 843
Period size: 249 Copynumber: 2.5 Consensus size: 249
921728 TTTCTTGATA
* **
921738 TGTAAATCCTTCGGGTCATCA-TAAGCCTTTCGAGCATGATGCTT-AATTATTCGGGTCATCTGT
1 TGTAAATCCTTCGGGTCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGT
*
921801 CAGTCTTTCGAGCCAGATGATAAGTCCTTAGGGCCATCCGTAAGACCTTCAGACAGGATGTTTAC
66 AAGTCTTTCGAGCCAGATGATAAGTCCTTAGGGCCATCCGTAAGACCTTCAGACAGGATGTTTAC
* *
921866 CTATGATTTTCACATGAAAATGAGAAAACAATTTTCAAAGTTTCTCATTTAATGTTCAAGAAAAT
131 ATATGATTTTCACATGAAAATGAGAAAACAATTTTCAAAGTTTCTCATTTAACGTTCAAGAAAAT
* *
921931 GAAATTTTTGAAAAGTAAGAAGTTTCTTACCTAGTAAATTATTTCGCAAAAATT
196 GAAATTTTTAAAAAGTAAGAAGTTTCTTACCTAGTAAATTATTTCCCAAAAATT
* *
921985 TGTAAA-CTCTTTGGGTCATCAGTAAGTCTTTCGAGCATGCTGCTTAAATCCTTCGGGTCATCTG
1 TGTAAATC-CTTCGGGTCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTG
* ** **
922049 TAAGCCTTTCGAGCCAGATGATAAGTCCTTAGGGCCATCCGTCAA-ACCTTTGGGTAGGATGTTT
65 TAAGTCTTTCGAGCCAGATGATAAGTCCTTAGGGCCATCCGT-AAGACCTTCAGACAGGATGTTT
* *
922113 ACATATGATTTTCGCATGAAAATGGGAAATA-AATTTTCAAA-TCTTCTCATTTAACGTTCAAGA
129 ACATATGATTTTCACATGAAAATGAGAAA-ACAATTTTCAAAGT-TTCTCATTTAACGTTCAAGA
* *
922176 AAATGAAATTTTTAAAAAGTAAGAAGTTTTTTACCTAGTAAATTATTTCCCACAAATT
192 AAATGAAATTTTTAAAAAGTAAGAAGTTTCTTACCTAGTAAATTATTTCCCAAAAATT
* * * * *
922234 TGTAAATCCTTCGGGTCATCTGTCAA-TCTTTCGAGCCA-GATGTTTAAATCCTTAGGGTTATTT
1 TGTAAATCCTTCGGGTCATCAGT-AAGTCTTTCGAG-CATGATGCTTAAATCCTTCGGGTCATCT
* * * * * * * *
922297 ATTAGTCTTTCGAGCAAGATGAATAAGTCCTTAGTGCCATCTGTAAGACATTCAGGCATGATGTT
64 GTAAGTCTTTCGAGCCAGATG-ATAAGTCCTTAGGGCCATCCGTAAGACCTTCAGACAGGATGTT
922362 T
128 T
922363 TTACTCTTTA
Statistics
Matches: 330, Mismatches: 37, Indels: 19
0.85 0.10 0.05
Matches are distributed among these distances:
246 1 0.00
247 18 0.05
248 22 0.07
249 247 0.75
250 42 0.13
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (249 bp):
TGTAAATCCTTCGGGTCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGT
AAGTCTTTCGAGCCAGATGATAAGTCCTTAGGGCCATCCGTAAGACCTTCAGACAGGATGTTTAC
ATATGATTTTCACATGAAAATGAGAAAACAATTTTCAAAGTTTCTCATTTAACGTTCAAGAAAAT
GAAATTTTTAAAAAGTAAGAAGTTTCTTACCTAGTAAATTATTTCCCAAAAATT
Found at i:922514 original size:3 final size:3
Alignment explanation
Indices: 922506--922569 Score: 60
Period size: 3 Copynumber: 22.0 Consensus size: 3
922496 CTAATTATAT
* * * * *
922506 TTA TTA TTA TTA CTA CTA TTA TTA TAA TAA TTA -TA TTA TTA TTA TAA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
922553 TAA TTA -TA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA
922570 CAAATAATAC
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
2 4 0.08
3 49 0.92
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (3 bp):
TTA
Found at i:922547 original size:20 final size:20
Alignment explanation
Indices: 922522--922569 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
922512 TTATTACTAC
922522 TATTATTATAATAATTATAT
1 TATTATTATAATAATTATAT
922542 TATTATTATAATAATTATAT
1 TATTATTATAATAATTATAT
922562 TATTATTA
1 TATTATTA
922570 CAAATAATAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
TATTATTATAATAATTATAT
Found at i:925682 original size:24 final size:24
Alignment explanation
Indices: 925653--925713 Score: 113
Period size: 24 Copynumber: 2.5 Consensus size: 24
925643 TTGGGGTATC
*
925653 ACTGCGAATCTGAGCAACAACGGT
1 ACTGCGCATCTGAGCAACAACGGT
925677 ACTGCGCATCTGAGCAACAACGGT
1 ACTGCGCATCTGAGCAACAACGGT
925701 ACTGCGCATCTGA
1 ACTGCGCATCTGA
925714 CACAACAGGA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.30, C:0.28, G:0.25, T:0.18
Consensus pattern (24 bp):
ACTGCGCATCTGAGCAACAACGGT
Found at i:929022 original size:20 final size:20
Alignment explanation
Indices: 928913--929020 Score: 153
Period size: 20 Copynumber: 5.3 Consensus size: 20
928903 ACCAACAAAT
* **
928913 TCGCAACGCGATTTTCCAAA
1 TCGCAACGCGAATTTGTAAA
*
928933 TTCGCAACGCGAATATGTAAA
1 -TCGCAACGCGAATTTGTAAA
928954 TCGCAACGCGAATTTGTAAA
1 TCGCAACGCGAATTTGTAAA
928974 TCGCAACGCGAATTTGTAAA
1 TCGCAACGCGAATTTGTAAA
* *
928994 TCGCAACACGAATTTGTAAT
1 TCGCAACGCGAATTTGTAAA
929014 TCGCAAC
1 TCGCAAC
929021 ACAGAAGTCA
Statistics
Matches: 80, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
20 64 0.80
21 16 0.20
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (20 bp):
TCGCAACGCGAATTTGTAAA
Found at i:929038 original size:40 final size:38
Alignment explanation
Indices: 928947--929039 Score: 107
Period size: 40 Copynumber: 2.3 Consensus size: 38
928937 CAACGCGAAT
* *
928947 ATGTAAATCGCAACGCGAATTTGTAAATCGCAACGCGA
1 ATGTAAATCGCAACACGAATTTGTAAATCGCAACACGA
*
928985 ATTTGTAAATCGCAACACGAATTTGTAATTCGCAACACAGA
1 A--TGTAAATCGCAACACGAATTTGTAAATCGCAACAC-GA
929026 A-GTCAAATTCGCAA
1 ATGT-AAA-TCGCAA
929040 AGCGCGTTTA
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
38 3 0.06
39 3 0.06
40 38 0.81
41 3 0.06
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (38 bp):
ATGTAAATCGCAACACGAATTTGTAAATCGCAACACGA
Found at i:929038 original size:60 final size:61
Alignment explanation
Indices: 928908--929039 Score: 146
Period size: 60 Copynumber: 2.2 Consensus size: 61
928898 AAATAACCAA
* * *
928908 CAAATTCGCAACGCGATTTTCCAAATTCGCAACGCGAATATGTAAATCGCAACGCGAATTTGT
1 CAAATTCGCAACGCGAATTTCCAAATTCGCAACACGAATATGTAAATCGCAACACGAA--TGT
** * *
928971 -AAA-TCGCAACGCGAATTTGTAAA-TCGCAACACGAATTTGTAATTCGCAACACAGAA-GT
1 CAAATTCGCAACGCGAATTTCCAAATTCGCAACACGAATATGTAAATCGCAACAC-GAATGT
929029 CAAATTCGCAA
1 CAAATTCGCAA
929040 AGCGCGTTTA
Statistics
Matches: 59, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
58 2 0.03
59 3 0.05
60 31 0.53
61 20 0.34
62 3 0.05
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.23
Consensus pattern (61 bp):
CAAATTCGCAACGCGAATTTCCAAATTCGCAACACGAATATGTAAATCGCAACACGAATGT
Found at i:929212 original size:22 final size:22
Alignment explanation
Indices: 929187--929240 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
929177 TCACTCTCTA
*
929187 CGGCGACATCAGTCCCCATCTC
1 CGGCGAAATCAGTCCCCATCTC
* *
929209 CGGCGAAATCCGTCCTCATCTC
1 CGGCGAAATCAGTCCCCATCTC
*
929231 CGACGAAATC
1 CGGCGAAATC
929241 GTCTATCTCC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.22, C:0.41, G:0.19, T:0.19
Consensus pattern (22 bp):
CGGCGAAATCAGTCCCCATCTC
Found at i:929605 original size:20 final size:20
Alignment explanation
Indices: 929582--929620 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
929572 TTTGAAACTT
929582 AAATTCGCAACACGAAAATG
1 AAATTCGCAACACGAAAATG
929602 AAATTCGCAACACGAAAAT
1 AAATTCGCAACACGAAAAT
929621 CGCAACGCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.51, C:0.21, G:0.13, T:0.15
Consensus pattern (20 bp):
AAATTCGCAACACGAAAATG
Found at i:929670 original size:20 final size:20
Alignment explanation
Indices: 929627--929689 Score: 85
Period size: 20 Copynumber: 3.2 Consensus size: 20
929617 AAATCGCAAC
929627 GCGATTTT-AGTTTT-GCGTT
1 GCGATTTTCA-TTTTCGCGTT
* *
929646 ACGATTTTCATTTTCTCGTT
1 GCGATTTTCATTTTCGCGTT
929666 GCGATTTTCATTTTCGCGTT
1 GCGATTTTCATTTTCGCGTT
929686 GCGA
1 GCGA
929690 ATTTAAGTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
19 11 0.29
20 27 0.71
ACGTcount: A:0.13, C:0.17, G:0.21, T:0.49
Consensus pattern (20 bp):
GCGATTTTCATTTTCGCGTT
Found at i:929700 original size:20 final size:20
Alignment explanation
Indices: 929657--929700 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
929647 CGATTTTCAT
* * * *
929657 TTTCTCGTTGCGATTTTCAT
1 TTTCGCGTTGCGAATTTAAG
929677 TTTCGCGTTGCGAATTTAAG
1 TTTCGCGTTGCGAATTTAAG
929697 TTTC
1 TTTC
929701 AGAAACTACT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.14, C:0.18, G:0.18, T:0.50
Consensus pattern (20 bp):
TTTCGCGTTGCGAATTTAAG
Found at i:931665 original size:21 final size:21
Alignment explanation
Indices: 931639--931732 Score: 106
Period size: 21 Copynumber: 4.6 Consensus size: 21
931629 TTCACCTGTC
931639 ATCGTTCAAGAGGCCCCTCCT
1 ATCGTTCAAGAGGCCCCTCCT
931660 ATCGTTCAAGAGGCCCCT-C-
1 ATCGTTCAAGAGGCCCCTCCT
* *
931679 -TCATTCAAGAGGCCCCTCCC
1 ATCGTTCAAGAGGCCCCTCCT
* **
931699 ACCGTTCAAGAGG-CCCTTGT
1 ATCGTTCAAGAGGCCCCTCCT
931719 CATCGTTCAAGAGG
1 -ATCGTTCAAGAGG
931733 TCCTCCCACC
Statistics
Matches: 62, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
18 16 0.26
19 1 0.02
20 5 0.08
21 40 0.65
ACGTcount: A:0.21, C:0.35, G:0.21, T:0.22
Consensus pattern (21 bp):
ATCGTTCAAGAGGCCCCTCCT
Found at i:931750 original size:20 final size:20
Alignment explanation
Indices: 931641--931751 Score: 93
Period size: 21 Copynumber: 5.5 Consensus size: 20
931631 CACCTGTCAT
* *
931641 CGTTCAAGAGGCCCCTCCTAT
1 CGTTCAAGAGG-CCCTCCCAC
*
931662 CGTTCAAGAGGCCCCTCTCA-
1 CGTTCAAGAGG-CCCTCCCAC
931682 --TTCAAGAGGCCCCTCCCAC
1 CGTTCAAGAGG-CCCTCCCAC
** *
931701 CGTTCAAGAGGCCCTTGTCAT
1 CGTTCAAGAGGCCC-TCCCAC
*
931722 CGTTCAAGAGGTCCTCCCAC
1 CGTTCAAGAGGCCCTCCCAC
*
931742 CGTTTAAGAG
1 CGTTCAAGAG
931752 CCCGATTCAC
Statistics
Matches: 75, Mismatches: 11, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
18 17 0.23
20 15 0.20
21 43 0.57
ACGTcount: A:0.21, C:0.36, G:0.21, T:0.23
Consensus pattern (20 bp):
CGTTCAAGAGGCCCTCCCAC
Found at i:935860 original size:24 final size:24
Alignment explanation
Indices: 935833--935879 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
935823 CAAAATCTGA
935833 GTATTGACCAAGATCAAAGTTCGG
1 GTATTGACCAAGATCAAAGTTCGG
*
935857 GTATTGACCAAGATCAAATTTCG
1 GTATTGACCAAGATCAAAGTTCG
935880 AATACTGACT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (24 bp):
GTATTGACCAAGATCAAAGTTCGG
Found at i:935888 original size:24 final size:24
Alignment explanation
Indices: 935837--935888 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
935827 ATCTGAGTAT
** *
935837 TGACCAAGATCAAAGTTCGGGTAT
1 TGACCAAGATCAAAGTTCGAATAC
*
935861 TGACCAAGATCAAATTTCGAATAC
1 TGACCAAGATCAAAGTTCGAATAC
935885 TGAC
1 TGAC
935889 TAGTACTTAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (24 bp):
TGACCAAGATCAAAGTTCGAATAC
Found at i:936022 original size:12 final size:12
Alignment explanation
Indices: 936001--936034 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
935991 GGTTGTGGGT
*
936001 TTTGAGATTGTG
1 TTTGATATTGTG
936013 TTTGATATTGTG
1 TTTGATATTGTG
*
936025 TTTGGTATTG
1 TTTGATATTG
936035 GAAATGTGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.29, T:0.56
Consensus pattern (12 bp):
TTTGATATTGTG
Found at i:936844 original size:20 final size:19
Alignment explanation
Indices: 936801--936918 Score: 73
Period size: 20 Copynumber: 5.9 Consensus size: 19
936791 AAAACATTTG
* *
936801 TGTTGCGAAAATAAAA-CT
1 TGTTGCGAAATTAAAATCA
936819 TGTTGCGAAATTAAAATTCA
1 TGTTGCGAAATTAAAA-TCA
936839 TGTTGCG-AATTCAAAAATC-
1 TGTTGCGAAATT--AAAATCA
*
936858 TAGTTGCGAATTTAGAAATCGA
1 T-GTTGCGAAATTA-AAATC-A
* *
936880 -GTTGCGAATTTGAAATTCA
1 TGTTGCGAAATT-AAAATCA
*
936899 GTGTTGCGAATTTAGAAATC
1 -TGTTGCGAAATTA-AAATC
936919 GCGAATTTGG
Statistics
Matches: 82, Mismatches: 5, Indels: 23
0.75 0.05 0.21
Matches are distributed among these distances:
18 15 0.18
19 7 0.09
20 37 0.45
21 23 0.28
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.33
Consensus pattern (19 bp):
TGTTGCGAAATTAAAATCA
Found at i:937657 original size:34 final size:30
Alignment explanation
Indices: 937610--937678 Score: 86
Period size: 30 Copynumber: 2.2 Consensus size: 30
937600 TTAGGGATTT
937610 TTTAATATATAAAATAATATTATATTATTATATA
1 TTTAATATAT-AAA-AATATTATA-TA-TATATA
937644 TTTAAT-TATTAAAAATATTATATATATATA
1 TTTAATATA-TAAAAATATTATATATATATA
937674 TTTAA
1 TTTAA
937679 ATTTGTGTGT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
30 11 0.32
31 2 0.06
32 9 0.26
33 5 0.15
34 7 0.21
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (30 bp):
TTTAATATATAAAAATATTATATATATATA
Found at i:942356 original size:9 final size:9
Alignment explanation
Indices: 942338--942373 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
942328 TATCATATAC
942338 TTTA-AAAT
1 TTTATAAAT
942346 TTTATAAA-
1 TTTATAAAT
942354 TTTATAAAT
1 TTTATAAAT
942363 TTTATAAAT
1 TTTATAAAT
942372 TT
1 TT
942374 ATTACCTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
8 12 0.46
9 14 0.54
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
TTTATAAAT
Found at i:942357 original size:8 final size:8
Alignment explanation
Indices: 942346--942375 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
942336 ACTTTAAAAT
942346 TTTATAAA
1 TTTATAAA
942354 TTTATAAA
1 TTTATAAA
942362 TTTTATAAA
1 -TTTATAAA
942371 TTTAT
1 TTTAT
942376 TACCTAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (8 bp):
TTTATAAA
Found at i:942364 original size:17 final size:17
Alignment explanation
Indices: 942338--942375 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
942328 TATCATATAC
942338 TTTA-AAATTTTATAAA
1 TTTATAAATTTTATAAA
942354 TTTATAAATTTTATAAA
1 TTTATAAATTTTATAAA
942371 TTTAT
1 TTTAT
942376 TACCTAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TTTATAAATTTTATAAA
Found at i:943290 original size:3 final size:3
Alignment explanation
Indices: 943282--943310 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
943272 CTGCTAATTT
943282 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
943311 TCTTAATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:954462 original size:23 final size:23
Alignment explanation
Indices: 954428--954488 Score: 104
Period size: 23 Copynumber: 2.7 Consensus size: 23
954418 CTCATATAAA
*
954428 TGCACCGAAGTGCCACGTAGAAT
1 TGCACCGTAGTGCCACGTAGAAT
*
954451 TGCACCGTAGTGCCGCGTAGAAT
1 TGCACCGTAGTGCCACGTAGAAT
954474 TGCACCGTAGTGCCA
1 TGCACCGTAGTGCCA
954489 TATAATAATG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.20
Consensus pattern (23 bp):
TGCACCGTAGTGCCACGTAGAAT
Found at i:956190 original size:21 final size:21
Alignment explanation
Indices: 956164--956207 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
956154 TTTGTATTCG
* *
956164 CTTGAAGGGGTATCGGTTCCC
1 CTTGAAGGGGTACCGATTCCC
*
956185 CTTGAATGGGTACCGATTCCC
1 CTTGAAGGGGTACCGATTCCC
956206 CT
1 CT
956208 AGCCCAGAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.16, C:0.27, G:0.27, T:0.30
Consensus pattern (21 bp):
CTTGAAGGGGTACCGATTCCC
Found at i:963280 original size:21 final size:22
Alignment explanation
Indices: 963254--963298 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 22
963244 GATTGCAAAT
963254 AGGGTATCGATA-CCATGCTAC
1 AGGGTATCGATACCCATGCTAC
*
963275 AGGGTATCGATACCCCTGCTAC
1 AGGGTATCGATACCCATGCTAC
963297 AG
1 AG
963299 TACTGCTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.22
Consensus pattern (22 bp):
AGGGTATCGATACCCATGCTAC
Found at i:963306 original size:11 final size:11
Alignment explanation
Indices: 963290--963333 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
963280 ATCGATACCC
963290 CTGCTACAGTA
1 CTGCTACAGTA
* *
963301 CTGCTATAATA
1 CTGCTACAGTA
*
963312 TTGCTACAGTA
1 CTGCTACAGTA
*
963323 CTGATACAGTA
1 CTGCTACAGTA
963334 TTTCCATAAC
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (11 bp):
CTGCTACAGTA
Found at i:963335 original size:22 final size:22
Alignment explanation
Indices: 963291--963335 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
963281 TCGATACCCC
* *
963291 TGCTACAGTACTGCTATAATAT
1 TGCTACAGTACTGATACAATAT
*
963313 TGCTACAGTACTGATACAGTAT
1 TGCTACAGTACTGATACAATAT
963335 T
1 T
963336 TCCATAACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.36
Consensus pattern (22 bp):
TGCTACAGTACTGATACAATAT
Found at i:964061 original size:24 final size:24
Alignment explanation
Indices: 964029--964097 Score: 120
Period size: 24 Copynumber: 2.9 Consensus size: 24
964019 AATACATATA
964029 TGTCCCGAAGGACCACGTAGAATT
1 TGTCCCGAAGGACCACGTAGAATT
*
964053 TGTCCCGAATGACCACGTAGAATT
1 TGTCCCGAAGGACCACGTAGAATT
*
964077 TGTCCCGAAGGACCGCGTAGA
1 TGTCCCGAAGGACCACGTAGA
964098 CCCTCTACTT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.28, C:0.26, G:0.26, T:0.20
Consensus pattern (24 bp):
TGTCCCGAAGGACCACGTAGAATT
Found at i:964720 original size:20 final size:20
Alignment explanation
Indices: 964695--964751 Score: 87
Period size: 20 Copynumber: 2.9 Consensus size: 20
964685 CTTTTCCTTT
* *
964695 AGGGGGAATCGATTCCCCCC
1 AGGGGGTATCGGTTCCCCCC
*
964715 AGGGGGTATTGGTTCCCCCC
1 AGGGGGTATCGGTTCCCCCC
964735 AGGGGGTATCGGTTCCC
1 AGGGGGTATCGGTTCCC
964752 TCTGCATAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.14, C:0.30, G:0.35, T:0.21
Consensus pattern (20 bp):
AGGGGGTATCGGTTCCCCCC
Found at i:966631 original size:32 final size:32
Alignment explanation
Indices: 966501--966629 Score: 113
Period size: 32 Copynumber: 4.1 Consensus size: 32
966491 CCTAAGGTGA
* *
966501 CCTTAGGTAGGCTCTGAGGCCCCAAGGCAT-TT
1 CCTTGGGTAGGCTCTAAGGCCCCAAGG-ATATT
* *
966533 CCTTAGGTAGGCTCTAAGG-CCCAAAGATACTT
1 CCTTGGGTAGGCTCTAAGGCCCCAAGGATA-TT
* * * * *
966565 CCTTGGGTAGACTCTTAGGCCCTAATG-TACT
1 CCTTGGGTAGGCTCTAAGGCCCCAAGGATATT
*
966596 CCATTGGGCAGGCTCTAAGGCCCCAA-GATATT
1 CC-TTGGGTAGGCTCTAAGGCCCCAAGGATATT
966628 CC
1 CC
966630 ATGAGGTTGG
Statistics
Matches: 79, Mismatches: 13, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
30 2 0.03
31 10 0.13
32 62 0.78
33 5 0.06
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (32 bp):
CCTTGGGTAGGCTCTAAGGCCCCAAGGATATT
Found at i:971361 original size:31 final size:31
Alignment explanation
Indices: 971301--971361 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
971291 TGGATTTTGG
971301 TGAATTTTATTTTAATATATAAATGATTTTT
1 TGAATTTTATTTTAATATATAAATGATTTTT
* *
971332 TGAACTTTTATTTT-ATCTATAAATTATTTT
1 TGAA-TTTTATTTTAATATATAAATGATTTT
971362 ATAGTTTTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 18 0.67
32 9 0.33
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.59
Consensus pattern (31 bp):
TGAATTTTATTTTAATATATAAATGATTTTT
Found at i:972695 original size:35 final size:35
Alignment explanation
Indices: 972648--972733 Score: 100
Period size: 35 Copynumber: 2.5 Consensus size: 35
972638 AAAACAGTCA
* * *
972648 TCAATTTCATTCTAAACCCCAATTTCCAAAGTAAT
1 TCAATTTAATTCTAAACCCCAAATTCCAAAATAAT
* * * *
972683 TCAATTTTATTCTAAACCCTAAATTCTAAAATACT
1 TCAATTTAATTCTAAACCCCAAATTCCAAAATAAT
*
972718 TCAATTAAATTCTAAA
1 TCAATTTAATTCTAAA
972734 ATACTTCAAT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 43 1.00
ACGTcount: A:0.41, C:0.21, G:0.01, T:0.37
Consensus pattern (35 bp):
TCAATTTAATTCTAAACCCCAAATTCCAAAATAAT
Found at i:972727 original size:21 final size:21
Alignment explanation
Indices: 972702--972744 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
972692 TTCTAAACCC
972702 TAAATTCTAAAATACTTCAAT
1 TAAATTCTAAAATACTTCAAT
972723 TAAATTCTAAAATACTTCAAT
1 TAAATTCTAAAATACTTCAAT
972744 T
1 T
972745 TAAGGTAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.47, C:0.14, G:0.00, T:0.40
Consensus pattern (21 bp):
TAAATTCTAAAATACTTCAAT
Found at i:972819 original size:16 final size:16
Alignment explanation
Indices: 972800--972835 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
972790 CGAATAAAAA
972800 TATATTTATATAAATG
1 TATATTTATATAAATG
* *
972816 TATATTTATTTAGATG
1 TATATTTATATAAATG
972832 TATA
1 TATA
972836 AATAAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (16 bp):
TATATTTATATAAATG
Found at i:972895 original size:16 final size:18
Alignment explanation
Indices: 972863--972895 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
972853 TATTAATGTA
972863 TGAATCATTTATATTTTT
1 TGAATCATTTATATTTTT
972881 TGAAT-ATTT-TATTTT
1 TGAATCATTTATATTTT
972896 AATAAGAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 4 0.27
18 5 0.33
ACGTcount: A:0.27, C:0.03, G:0.06, T:0.64
Consensus pattern (18 bp):
TGAATCATTTATATTTTT
Found at i:973568 original size:130 final size:130
Alignment explanation
Indices: 973365--973612 Score: 406
Period size: 130 Copynumber: 1.9 Consensus size: 130
973355 AATTTTCTTC
* * *
973365 TAATTAGGAGGTGACATGTGTCACCAATAACACATATCATGATCATGTGTTAACACATGTCAGAT
1 TAATTAGGAGGTAACACGTGTCACCAATAACACATATCATGATCATGTGCTAACACATGTCAGAT
* *
973430 CCTGATTAAATGATTAATTTATTAAATTTTATTTAATTTAGGACCAAATTGATAGCATATATAAA
66 CCTAATTAAATAATTAATTTATTAAATTTTATTTAATTTAGGACCAAATTGATAGCATATATAAA
* * * *
973495 TAATTAGGTGGTAACACGTGTCACCAATGACACGTGTCATGATCATGTGCTAACACATGTCAGAT
1 TAATTAGGAGGTAACACGTGTCACCAATAACACATATCATGATCATGTGCTAACACATGTCAGAT
*
973560 CCTAATTAAATAATTAATTTATTTAATTTTATTTAATTTAGGACCAAATTGAT
66 CCTAATTAAATAATTAATTTATTAAATTTTATTTAATTTAGGACCAAATTGAT
973613 TATATAAATA
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
130 108 1.00
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (130 bp):
TAATTAGGAGGTAACACGTGTCACCAATAACACATATCATGATCATGTGCTAACACATGTCAGAT
CCTAATTAAATAATTAATTTATTAAATTTTATTTAATTTAGGACCAAATTGATAGCATATATAAA
Found at i:974574 original size:31 final size:32
Alignment explanation
Indices: 974539--974658 Score: 142
Period size: 31 Copynumber: 3.8 Consensus size: 32
974529 ATTGTGTACA
*
974539 AGTTTGAT-AAATTTAATAGTCATTTTGAAAT
1 AGTTTGATAAAATTTAATAGTCATTTTGTAAT
*
974570 AGTTTGATAAAATTTAATA-ACATTTTGTAAT
1 AGTTTGATAAAATTTAATAGTCATTTTGTAAT
* **
974601 AATTCT-ATAAAATTTAATAACCATTTTGTAAT
1 AGTT-TGATAAAATTTAATAGTCATTTTGTAAT
974633 AGTTTGAT-AAATTTAAT-GATCATTTT
1 AGTTTGATAAAATTTAATAG-TCATTTT
974659 AAAACTTTTA
Statistics
Matches: 77, Mismatches: 7, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
31 50 0.65
32 27 0.35
ACGTcount: A:0.40, C:0.05, G:0.09, T:0.46
Consensus pattern (32 bp):
AGTTTGATAAAATTTAATAGTCATTTTGTAAT
Found at i:984040 original size:24 final size:23
Alignment explanation
Indices: 984004--984048 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
983994 TTATCATAAC
* *
984004 TATTTTTTGATAAAATAATTAAA
1 TATTTTTTAATAAAACAATTAAA
984027 TATTATTTTAATAAAACAATTA
1 TATT-TTTTAATAAAACAATTA
984049 TGACTTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (23 bp):
TATTTTTTAATAAAACAATTAAA
Found at i:985279 original size:14 final size:14
Alignment explanation
Indices: 985260--985292 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
985250 GATGTACAAG
985260 AAACATGAAATCAC
1 AAACATGAAATCAC
985274 AAACATGAAATCAC
1 AAACATGAAATCAC
985288 AAACA
1 AAACA
985293 ACAAGACATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.61, C:0.21, G:0.06, T:0.12
Consensus pattern (14 bp):
AAACATGAAATCAC
Found at i:985503 original size:21 final size:22
Alignment explanation
Indices: 985468--985558 Score: 60
Period size: 23 Copynumber: 4.1 Consensus size: 22
985458 CACCGAAGTG
*
985468 CCACATAAAATGTCCTAAAGGA
1 CCACATAAAATGTCCCAAAGGA
* *
985490 CCACAT-AGATGTCCCGAAGGA
1 CCACATAAAATGTCCCAAAGGA
* * *
985511 CCGCGTAGAAATATCCCGAAA-GA
1 CCACATA-AAATGTCCC-AAAGGA
* * *
985534 CCACGTAGAATTGTCCCGAAGGA
1 CCACATA-AAATGTCCCAAAGGA
985557 CC
1 CC
985559 GCGTAGAACT
Statistics
Matches: 53, Mismatches: 12, Indels: 7
0.74 0.17 0.10
Matches are distributed among these distances:
21 16 0.30
22 8 0.15
23 27 0.51
24 2 0.04
ACGTcount: A:0.36, C:0.27, G:0.21, T:0.15
Consensus pattern (22 bp):
CCACATAAAATGTCCCAAAGGA
Found at i:985535 original size:23 final size:23
Alignment explanation
Indices: 985501--985566 Score: 96
Period size: 23 Copynumber: 2.9 Consensus size: 23
985491 CACATAGATG
985501 TCCCGAAGGACCGCGTAGAAATA
1 TCCCGAAGGACCGCGTAGAAATA
* * * *
985524 TCCCGAAAGACCACGTAGAATTG
1 TCCCGAAGGACCGCGTAGAAATA
985547 TCCCGAAGGACCGCGTAGAA
1 TCCCGAAGGACCGCGTAGAA
985567 CTCTCGACTC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.33, C:0.27, G:0.26, T:0.14
Consensus pattern (23 bp):
TCCCGAAGGACCGCGTAGAAATA
Done.