genome.fa.s9019.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009019.1 Hibiscus syriacus cultivar Beakdansim tig00112409_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  155641

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6981--7024	22	1.9	23	82	17	56	15	20	15	47	1.82
7626--7655	4	7.2	4	96	3	51	70	0	3	26	1.03
8628--8691	4	15.2	4	75	15	58	68	0	4	26	1.09
8628--8688	26	2.4	27	76	20	76	68	0	4	26	1.09
11166--11248	19	4.5	19	73	18	59	44	21	22	10	1.83
11185--11284	19	5.8	19	70	22	87	45	19	24	12	1.83
11187--11280	33	2.9	33	96	1	172	43	19	24	12	1.85
11280--11322	20	2.2	20	87	4	61	16	18	23	41	1.89
11463--11499	14	2.6	14	91	0	65	45	24	0	29	1.53
12883--12966	42	2.0	42	85	0	114	22	16	39	21	1.92
14991--15089	33	3.0	33	89	1	144	39	26	23	11	1.88
14966--15188	19	12.1	19	81	11	241	43	21	21	12	1.85
15184--15228	19	2.4	19	92	0	72	8	15	26	48	1.74
15785--15878	20	4.7	20	80	2	89	23	18	24	34	1.96
15806--15940	41	3.3	41	81	4	130	20	21	20	37	1.94
15867--15959	20	4.6	20	78	4	96	18	24	18	38	1.92
15867--15962	41	2.3	41	98	0	183	18	23	17	39	1.92
16848--16885	14	2.7	14	100	0	76	60	5	0	34	1.19
31828--31883	27	2.1	27	96	0	103	41	7	23	28	1.80
42300--42362	3	22.0	3	79	9	60	63	1	0	34	1.04
42291--42366	10	7.6	10	75	15	59	65	1	0	32	1.01
42320--42366	14	3.4	14	85	2	69	70	0	0	29	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42289--42370	17	5.2	17	72	16	54	68	1	0	30	0.98
42917--42976	28	2.1	28	90	0	93	36	20	21	21	1.95
43262--43406	53	2.8	52	89	3	211	37	18	22	21	1.94
45512--45539	2	14.0	2	100	0	56	50	0	0	50	1.00
46014--46047	13	2.7	13	90	4	52	23	0	0	76	0.79
46396--46441	3	16.0	3	80	8	51	34	0	2	63	1.07
46392--46441	14	3.4	14	84	13	57	34	0	2	64	1.05
46396--46443	17	2.8	17	90	0	69	35	0	2	62	1.07
54185--55525	345	4.0	344	91	5	2173	39	10	14	35	1.80
58328--58373	3	15.3	3	90	0	74	71	0	0	28	0.86
58793--58825	17	2.0	17	88	5	50	24	3	0	72	0.98
63765--63835	33	2.2	33	87	5	99	42	23	2	30	1.69
64646--64704	29	2.0	29	100	0	118	38	13	13	33	1.84
65179--65215	18	2.0	19	94	5	67	75	10	0	13	1.04
65667--65753	31	2.8	30	83	8	102	48	4	0	47	1.22
65667--65750	32	2.7	32	82	12	102	48	4	0	46	1.23
67128--67201	25	2.8	27	81	10	89	54	0	1	44	1.08
70955--71006	25	2.2	25	89	6	81	28	3	1	65	1.21
70962--71011	25	2.0	25	92	7	84	28	6	2	64	1.28
79492--79546	28	2.0	28	85	0	74	32	18	16	32	1.93
97599--97653	21	2.5	22	82	2	58	38	3	1	56	1.28
101060--101088	2	14.5	2	100	0	58	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102971--103031	29	2.0	30	81	6	70	63	6	6	22	1.42
104851--104906	24	2.3	25	79	14	64	53	1	0	44	1.11
105739--105769	2	15.5	2	100	0	62	48	0	0	51	1.00
113777--113998	112	2.0	108	85	11	299	16	24	29	29	1.97
114259--114305	18	2.6	18	100	0	94	25	14	36	23	1.93
117687--118337	8	86.8	8	70	20	383	40	3	5	50	1.42
117731--118348	37	16.0	37	81	14	569	40	3	5	50	1.43
117731--118323	131	4.7	128	87	9	630	40	3	6	49	1.43
117741--118369	23	28.9	22	70	17	238	40	3	6	49	1.44
117661--118379	14	53.9	13	70	19	354	40	3	5	50	1.43
117793--118382	131	4.6	128	84	11	705	40	3	6	49	1.44
120584--120942	172	2.1	173	90	2	562	37	18	5	39	1.72
121456--121509	22	2.5	22	87	0	90	16	35	18	29	1.93
122483--122510	2	14.0	2	100	0	56	50	0	0	50	1.00
125187--125219	17	1.9	17	93	0	57	51	18	0	30	1.46
125865--125986	60	2.0	60	100	0	244	38	4	9	46	1.59
126049--126073	13	1.9	13	100	0	50	60	0	8	32	1.26
131548--131578	2	15.5	2	100	0	62	51	0	0	48	1.00

Tables:   1

The End!