Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000902.1 Hibiscus syriacus cultivar Beakdansim tig00001773_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132748
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.33
Found at i:1914 original size:17 final size:18
Alignment explanation
Indices: 1880--1916 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
1870 GATAAATAAC
1880 AATAAAAATGTTAAGAAAA
1 AATAAAAATG-TAAGAAAA
1899 AATAAAAATG-AAGAAAA
1 AATAAAAATGTAAGAAAA
1916 A
1 A
1917 TATCCAGTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.44
19 10 0.56
ACGTcount: A:0.73, C:0.00, G:0.11, T:0.16
Consensus pattern (18 bp):
AATAAAAATGTAAGAAAA
Found at i:2096 original size:30 final size:30
Alignment explanation
Indices: 2033--2097 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
2023 AACAAATAAA
*
2033 TAAAGGATCAAAATAACAAAAACAAAATGT
1 TAAAGGATCAAAATAACAAAAACAAAATAT
*
2063 TAAAGGA-CTAAAATATCAAAAACAGAAA-AT
1 TAAAGGATC-AAAATAACAAAAACA-AAATAT
2093 TAAAG
1 TAAAG
2098 TAATAGAACA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 1 0.03
30 27 0.87
31 3 0.10
ACGTcount: A:0.63, C:0.09, G:0.11, T:0.17
Consensus pattern (30 bp):
TAAAGGATCAAAATAACAAAAACAAAATAT
Found at i:2451 original size:45 final size:43
Alignment explanation
Indices: 2401--2488 Score: 124
Period size: 45 Copynumber: 2.0 Consensus size: 43
2391 TCTTCGGGGC
*
2401 TCTTCACTTT-TCAAACTGTAGCTTCGAAAAAAATAGTGACCGTCG
1 TCTTCACTTTCT-AAACTGTACCTTC--AAAAAATAGTGACCGTCG
*
2446 TCTTCACTTTCTAAACTGTACCTTCAAAAAATGGTGACCGTCG
1 TCTTCACTTTCTAAACTGTACCTTCAAAAAATAGTGACCGTCG
2489 GGCTTCCAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
43 17 0.43
45 22 0.55
46 1 0.03
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.32
Consensus pattern (43 bp):
TCTTCACTTTCTAAACTGTACCTTCAAAAAATAGTGACCGTCG
Found at i:3097 original size:2 final size:2
Alignment explanation
Indices: 3034--3086 Score: 92
Period size: 2 Copynumber: 27.5 Consensus size: 2
3024 ATATGTAATG
3034 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3075 AT AT A- AT AT AT A
1 AT AT AT AT AT AT A
3087 CAAATTATAT
Statistics
Matches: 49, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
1 2 0.04
2 47 0.96
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:3706 original size:40 final size:40
Alignment explanation
Indices: 3661--3736 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
3651 CAGTATTTGG
3661 GTTTCAAGAGAAAAAAATTCAAAGGCTTTTTTGTGTGTGT
1 GTTTCAAGAGAAAAAAATTCAAAGGCTTTTTTGTGTGTGT
* * * * *
3701 GTTTCAAGAGAAACAATTTCGAGGGTTTTTTTGTGT
1 GTTTCAAGAGAAAAAAATTCAAAGGCTTTTTTGTGT
3737 TTCAAGAGAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.29, C:0.08, G:0.24, T:0.39
Consensus pattern (40 bp):
GTTTCAAGAGAAAAAAATTCAAAGGCTTTTTTGTGTGTGT
Found at i:3774 original size:36 final size:36
Alignment explanation
Indices: 3734--3818 Score: 129
Period size: 36 Copynumber: 2.4 Consensus size: 36
3724 GGTTTTTTTG
3734 TGTTTCAAGAGAAACTGTCTCAAGAGG-GACAAAATT
1 TGTTTCAAGAGAAACTGTCTCAAG-GGAGACAAAATT
* *
3770 TGTTTCAAAAGAAACTGTCTCAAGGGAGACGAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATT
3806 TGTTTCAAG-GAAA
1 TGTTTCAAGAGAAA
3819 AAATATTCAA
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
35 6 0.13
36 39 0.87
ACGTcount: A:0.39, C:0.13, G:0.22, T:0.26
Consensus pattern (36 bp):
TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATT
Found at i:4126 original size:111 final size:111
Alignment explanation
Indices: 3932--4152 Score: 345
Period size: 111 Copynumber: 2.0 Consensus size: 111
3922 AAAATGAATA
* *
3932 TTGCTGGTGAGCACGATTCCCTTCGTCGTGAAATTGAAACCGTTGATGGCCCCTAAGTCATGAAG
1 TTGCTGGTGAGCACGATTCCCTTCGTCGTGAAATTGAAACCGTGGATGGCCCATAAGTCATGAAG
*
3997 TTGAGCCTTGACTTGAATATCCTTCG-CTGTGAAGTTGAAATCCAAG
66 TTGAGCCTTGAATTGAATATCCTTCGTC-GTGAAGTTGAAATCCAAG
* ** **
4043 TTGCTGGTGAGCACGATTCCCTTCGTCGTGAAGTTGAAACCGTGGATGGCCCATTCGTTGTGAAG
1 TTGCTGGTGAGCACGATTCCCTTCGTCGTGAAATTGAAACCGTGGATGGCCCATAAGTCATGAAG
*
4108 TTGAGCCTTGAATTGAATATCGTTCGTCGTGAAGTTGAAATCCAA
66 TTGAGCCTTGAATTGAATATCCTTCGTCGTGAAGTTGAAATCCAA
4153 TGTAAGTTGC
Statistics
Matches: 100, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
111 99 0.99
112 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (111 bp):
TTGCTGGTGAGCACGATTCCCTTCGTCGTGAAATTGAAACCGTGGATGGCCCATAAGTCATGAAG
TTGAGCCTTGAATTGAATATCCTTCGTCGTGAAGTTGAAATCCAAG
Found at i:4602 original size:149 final size:149
Alignment explanation
Indices: 4332--4631 Score: 573
Period size: 149 Copynumber: 2.0 Consensus size: 149
4322 GTTGAAACCG
*
4332 CAGGTGGCCCCTTCGTCGTGAATTTGAGCCTGAGAATTGGATATCCTTCGTCGTGAAGTTGAAAT
1 CAGGTGGCCCCTTCGTCGTGAAGTTGAGCCTGAGAATTGGATATCCTTCGTCGTGAAGTTGAAAT
4397 CCAAGTATTGTTCCGAGTCCAATATCCTCCGTCGTGAAGTTGAAATTGGTTCTGGAACTGGGAAA
66 CCAAGTATTGTTCCGAGTCCAATATCCTCCGTCGTGAAGTTGAAATTGGTTCTGGAACTGGGAAA
4462 TTATTTGTTGACAGTCAGC
131 TTATTTGTTGACAGTCAGC
*
4481 CAGGTGGCCCCTTCGTCGTGAAGTTGAGCCTGAGAATTGGATATCCTTCGTCTTGAAGTTGAAAT
1 CAGGTGGCCCCTTCGTCGTGAAGTTGAGCCTGAGAATTGGATATCCTTCGTCGTGAAGTTGAAAT
*
4546 CCAAGTATTGTTCCGAGTCCAATATCCTCCGTCGTGAAGTTGAAATTGGTTCTGGAATTGGGAAA
66 CCAAGTATTGTTCCGAGTCCAATATCCTCCGTCGTGAAGTTGAAATTGGTTCTGGAACTGGGAAA
4611 TTATTTGTTGACAGTCAGC
131 TTATTTGTTGACAGTCAGC
4630 CA
1 CA
4632 CCCTTTCGCT
Statistics
Matches: 148, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
149 148 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (149 bp):
CAGGTGGCCCCTTCGTCGTGAAGTTGAGCCTGAGAATTGGATATCCTTCGTCGTGAAGTTGAAAT
CCAAGTATTGTTCCGAGTCCAATATCCTCCGTCGTGAAGTTGAAATTGGTTCTGGAACTGGGAAA
TTATTTGTTGACAGTCAGC
Found at i:7664 original size:22 final size:21
Alignment explanation
Indices: 7639--7682 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
7629 AGTCTCCTTT
7639 AACTACCTTCATTTTCTCCTCC
1 AACT-CCTTCATTTTCTCCTCC
* * *
7661 AACTGCTTGATTTTTTCCTCC
1 AACTCCTTCATTTTCTCCTCC
7682 A
1 A
7683 TCTTTTTCTC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.18, C:0.34, G:0.05, T:0.43
Consensus pattern (21 bp):
AACTCCTTCATTTTCTCCTCC
Found at i:9929 original size:19 final size:18
Alignment explanation
Indices: 9901--9937 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
9891 TTTAATTGCG
9901 AAAATTAAAATTTAAATT
1 AAAATTAAAATTTAAATT
*
9919 AAAACTTAAAATTTCAATT
1 AAAA-TTAAAATTTAAATT
9938 CGAAATAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (18 bp):
AAAATTAAAATTTAAATT
Found at i:10097 original size:17 final size:18
Alignment explanation
Indices: 10063--10099 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
10053 ATAAAATAAC
10063 AATAAAAATGTTAAGAAAA
1 AATAAAAATG-TAAGAAAA
10082 AATAAAAATG-AAGAAAA
1 AATAAAAATGTAAGAAAA
10099 A
1 A
10100 TATTCAGTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.44
19 10 0.56
ACGTcount: A:0.73, C:0.00, G:0.11, T:0.16
Consensus pattern (18 bp):
AATAAAAATGTAAGAAAA
Found at i:10283 original size:30 final size:30
Alignment explanation
Indices: 10220--10284 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
10210 AACAAATAAA
*
10220 TAAAGGATCAAAATAACAAAAACAAAAGGT
1 TAAAGGATCAAAATAACAAAAACAAAAGAT
*
10250 TAAAGGA-CTAAAATATCAAAAACAGAAA-AT
1 TAAAGGATC-AAAATAACAAAAACA-AAAGAT
10280 TAAAG
1 TAAAG
10285 TAATATAACA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 1 0.03
30 27 0.87
31 3 0.10
ACGTcount: A:0.63, C:0.09, G:0.12, T:0.15
Consensus pattern (30 bp):
TAAAGGATCAAAATAACAAAAACAAAAGAT
Found at i:12918 original size:41 final size:42
Alignment explanation
Indices: 12862--12948 Score: 158
Period size: 41 Copynumber: 2.1 Consensus size: 42
12852 CCTTTTAAAA
12862 TTTTAAATTTGTATATAATTTTAATATATTTTTCATATTTTC
1 TTTTAAATTTGTATATAATTTTAATATATTTTTCATATTTTC
*
12904 TTTT-AATTTTTATATAATTTTAATATATTTTTCATATTTTC
1 TTTTAAATTTGTATATAATTTTAATATATTTTTCATATTTTC
12945 TTTT
1 TTTT
12949 GGTGATCTAA
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 40 0.91
42 4 0.09
ACGTcount: A:0.29, C:0.05, G:0.01, T:0.66
Consensus pattern (42 bp):
TTTTAAATTTGTATATAATTTTAATATATTTTTCATATTTTC
Found at i:14544 original size:35 final size:35
Alignment explanation
Indices: 14496--14593 Score: 142
Period size: 35 Copynumber: 2.8 Consensus size: 35
14486 TATTTGTAAC
*
14496 AAGTCATGCCACTTGATGAATAGACTTATTATAAT
1 AAGTCATGTCACTTGATGAATAGACTTATTATAAT
* *
14531 AAGTCATGTCACTTGGTGAATAGATTTATTATAAT
1 AAGTCATGTCACTTGATGAATAGACTTATTATAAT
* * *
14566 AAGTCATATCACTTTATGAATATACTTA
1 AAGTCATGTCACTTGATGAATAGACTTA
14594 GTTTAAAATT
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 55 1.00
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.38
Consensus pattern (35 bp):
AAGTCATGTCACTTGATGAATAGACTTATTATAAT
Found at i:16258 original size:36 final size:38
Alignment explanation
Indices: 16206--16278 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 38
16196 GGCAATAAAT
16206 TTTGAAAAAATGA-TTTTCAAAGTTTGGTAAATGTTTC
1 TTTGAAAAAATGATTTTTCAAAGTTTGGTAAATGTTTC
*
16243 TTTG-AAAAATGATTTTTCAAAGTTTGGTAGATGTTT
1 TTTGAAAAAATGATTTTTCAAAGTTTGGTAAATGTTT
16279 GTTGAAATAT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 8 0.24
37 26 0.76
ACGTcount: A:0.33, C:0.04, G:0.18, T:0.45
Consensus pattern (38 bp):
TTTGAAAAAATGATTTTTCAAAGTTTGGTAAATGTTTC
Found at i:18883 original size:108 final size:108
Alignment explanation
Indices: 18694--18910 Score: 425
Period size: 108 Copynumber: 2.0 Consensus size: 108
18684 AAAATAAAGT
18694 TTAATATTTTAATTAAATTTATAAAATAAATTAGATATTTAAATAATATATTTAAAAAAATTAAA
1 TTAATATTTTAATTAAATTTATAAAATAAATTAGATATTTAAATAATATATTTAAAAAAATTAAA
18759 TTACGTATTAGTCACGAACTATTCACATATTTCTGTTTTTTTG
66 TTACGTATTAGTCACGAACTATTCACATATTTCTGTTTTTTTG
18802 TTAATATTTTAATTAAATTTATAAAATAAATTAGATATTTAAATAATATATTTAAAAAAATTAAA
1 TTAATATTTTAATTAAATTTATAAAATAAATTAGATATTTAAATAATATATTTAAAAAAATTAAA
*
18867 TTACGTTTTAGTCACGAACTATTCACATATTTCTGTTTTTTTG
66 TTACGTATTAGTCACGAACTATTCACATATTTCTGTTTTTTTG
18910 T
1 T
18911 CAACCAATTA
Statistics
Matches: 108, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
108 108 1.00
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.46
Consensus pattern (108 bp):
TTAATATTTTAATTAAATTTATAAAATAAATTAGATATTTAAATAATATATTTAAAAAAATTAAA
TTACGTATTAGTCACGAACTATTCACATATTTCTGTTTTTTTG
Found at i:25410 original size:17 final size:18
Alignment explanation
Indices: 25381--25428 Score: 57
Period size: 16 Copynumber: 2.8 Consensus size: 18
25371 CAAAAAAAAA
*
25381 TTAATTAAA-TAAAATA-
1 TTAAATAAATTAAAATAC
*
25397 TTAAA-AAATTTAAATAC
1 TTAAATAAATTAAAATAC
25414 TTAAATAAATTAAAA
1 TTAAATAAATTAAAA
25429 ACAAAATATT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 3 0.12
16 10 0.38
17 5 0.19
18 8 0.31
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (18 bp):
TTAAATAAATTAAAATAC
Found at i:26843 original size:21 final size:21
Alignment explanation
Indices: 26817--26861 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
26807 GATTTCTGGG
* *
26817 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
26838 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
26859 CAA
1 CAA
26862 ACGAACAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:27920 original size:63 final size:62
Alignment explanation
Indices: 27839--27960 Score: 174
Period size: 63 Copynumber: 2.0 Consensus size: 62
27829 GTCGAGGGTT
* *
27839 TACCTATGTTCTACGGAACATATGAACAGTTTTACCTATG-TCTTTCGAGACATATGGACAATA
1 TACCTATGTTCTAAGGAACATATGAACAG-TTTACCTAGGTTC-TTCGAGACATATGGACAATA
* * *
27902 TACCTATGTTCTAAGGAACATATGGACAGTTTACCTAGGTTCTTCGGGACCTATGGACA
1 TACCTATGTTCTAAGGAACATATGAACAGTTTACCTAGGTTCTTCGAGACATATGGACA
27961 GTTACCGAGG
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
62 24 0.45
63 29 0.55
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.32
Consensus pattern (62 bp):
TACCTATGTTCTAAGGAACATATGAACAGTTTACCTAGGTTCTTCGAGACATATGGACAATA
Found at i:27957 original size:31 final size:31
Alignment explanation
Indices: 27836--27963 Score: 134
Period size: 31 Copynumber: 4.1 Consensus size: 31
27826 AGAGTCGAGG
*
27836 GTTTACCTATGTTCTACGGAACATATGAACA
1 GTTTACCTATGTTCTACGGAACATATGGACA
*
27867 GTTTTACCTATG-TCTTTC-GAGACATATGGACA
1 G-TTTACCTATGTTC-TACGGA-ACATATGGACA
* * *
27899 ATATACCTATGTTCTAAGGAACATATGGACA
1 GTTTACCTATGTTCTACGGAACATATGGACA
* * * *
27930 GTTTACCTAGGTTCTTCGGGACCTATGGACA
1 GTTTACCTATGTTCTACGGAACATATGGACA
27961 GTT
1 GTT
27964 ACCGAGGATC
Statistics
Matches: 79, Mismatches: 13, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
31 53 0.67
32 26 0.33
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.34
Consensus pattern (31 bp):
GTTTACCTATGTTCTACGGAACATATGGACA
Found at i:27983 original size:30 final size:30
Alignment explanation
Indices: 27949--28080 Score: 221
Period size: 30 Copynumber: 4.4 Consensus size: 30
27939 GGTTCTTCGG
* *
27949 GACCTATGGACAGTTACCGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
27979 GACCTCTGGATAGTTACCGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
28009 GACCTCTGGATAGTTACCGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
* *
28039 GACCTCTGGATAGTTACCG-GGGTCTTTGT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
28068 GACCTCTGGATAG
1 GACCTCTGGATAG
28081 GTCCTTCGGG
Statistics
Matches: 98, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
29 21 0.21
30 77 0.79
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (30 bp):
GACCTCTGGATAGTTACCGAGGATCTTTAT
Found at i:31478 original size:21 final size:21
Alignment explanation
Indices: 31452--31496 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
31442 GATTTCTGGG
* *
31452 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
31473 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
31494 CAA
1 CAA
31497 ACGAACAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:32499 original size:32 final size:31
Alignment explanation
Indices: 32457--32584 Score: 152
Period size: 31 Copynumber: 4.1 Consensus size: 31
32447 AGAGTCGAGG
32457 GTTTACCTATGTTCTACGGAACATATGGACA
1 GTTTACCTATGTTCTACGGAACATATGGACA
*
32488 GTTTTACCTATG-TCTTTC-GAGACATATGGACA
1 G-TTTACCTATGTTC-TACGGA-ACATATGGACA
* *
32520 GTATACCTATGTTCTAAGGAACATATGGACA
1 GTTTACCTATGTTCTACGGAACATATGGACA
* * * *
32551 GTTTACCTAGGTTCTTCGGGACCTATGGACA
1 GTTTACCTATGTTCTACGGAACATATGGACA
32582 GTT
1 GTT
32585 ACCGAGGATC
Statistics
Matches: 82, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
31 54 0.66
32 28 0.34
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.34
Consensus pattern (31 bp):
GTTTACCTATGTTCTACGGAACATATGGACA
Found at i:32604 original size:30 final size:30
Alignment explanation
Indices: 32570--32701 Score: 212
Period size: 30 Copynumber: 4.4 Consensus size: 30
32560 GGTTCTTCGG
* *
32570 GACCTATGGACAGTTACCGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
32600 GACCTCTGGATAGTTACCGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
32630 GACCTCTGGATAGTTACCGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
** *
32660 GACCTCTGGATAGTTACCG-GGGCCTTTGT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
32689 GACCTCTGGATAG
1 GACCTCTGGATAG
32702 GTCCTTCGGG
Statistics
Matches: 97, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
29 20 0.21
30 77 0.79
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (30 bp):
GACCTCTGGATAGTTACCGAGGATCTTTAT
Found at i:36137 original size:21 final size:21
Alignment explanation
Indices: 36111--36155 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
36101 GATTTCTGGG
* *
36111 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCATT
*
36132 CAAGGGGAACCGATACCCCTT
1 CAAGGGGAACCGATACCCATT
36153 CAA
1 CAA
36156 ACGAACAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCATT
Found at i:37166 original size:32 final size:31
Alignment explanation
Indices: 37124--37251 Score: 118
Period size: 31 Copynumber: 4.1 Consensus size: 31
37114 AGAGTCGAGG
37124 GTTTACCTATGTTCTACGGAACATATGAACA
1 GTTTACCTATGTTCTACGGAACATATGAACA
* *
37155 GTTTTACCTATG-TCTTTC-GAGACATATGGACA
1 G-TTTACCTATGTTC-TACGGA-ACATATGAACA
* *
37187 GTATACCTATGTTCTAAGGAACATAT-AGACA
1 GTTTACCTATGTTCTACGGAACATATGA-ACA
* * * * *
37218 GTTTACCTAGGTTCTTCGGGACCTATGGACA
1 GTTTACCTATGTTCTACGGAACATATGAACA
37249 GTT
1 GTT
37252 ACCGAGGATC
Statistics
Matches: 77, Mismatches: 13, Indels: 14
0.74 0.12 0.13
Matches are distributed among these distances:
31 50 0.65
32 27 0.35
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.34
Consensus pattern (31 bp):
GTTTACCTATGTTCTACGGAACATATGAACA
Found at i:37208 original size:63 final size:61
Alignment explanation
Indices: 37126--37254 Score: 172
Period size: 63 Copynumber: 2.1 Consensus size: 61
37116 AGTCGAGGGT
* *
37126 TTACCTATGTTCTACGGAACATAT-GAACAGTTTTACCTATG-TCTTTCGAGACATATGGACAG
1 TTACCTATGTTCTAAGGAACATATAG-ACAG-TTTACCTAGGTTC-TTCGAGACATATGGACAG
* *
37188 TATACCTATGTTCTAAGGAACATATAGACAGTTTACCTAGGTTCTTCGGGACCTATGGACAG
1 T-TACCTATGTTCTAAGGAACATATAGACAGTTTACCTAGGTTCTTCGAGACATATGGACAG
37250 TTACC
1 TTACC
37255 GAGGATCTTT
Statistics
Matches: 60, Mismatches: 4, Indels: 7
0.85 0.06 0.10
Matches are distributed among these distances:
61 4 0.07
62 27 0.45
63 28 0.47
64 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.33
Consensus pattern (61 bp):
TTACCTATGTTCTAAGGAACATATAGACAGTTTACCTAGGTTCTTCGAGACATATGGACAG
Found at i:37271 original size:30 final size:30
Alignment explanation
Indices: 37237--37368 Score: 221
Period size: 30 Copynumber: 4.4 Consensus size: 30
37227 GGTTCTTCGG
* *
37237 GACCTATGGACAGTTACCGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
37267 GACCTCTGGATAGTTACCGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
37297 GACCTCTGGATAGTTACCGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
* *
37327 GACCTCTGGATAGTTACCG-GGGTCTTTGT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
37356 GACCTCTGGATAG
1 GACCTCTGGATAG
37369 GTCCTTCGGG
Statistics
Matches: 98, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
29 21 0.21
30 77 0.79
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (30 bp):
GACCTCTGGATAGTTACCGAGGATCTTTAT
Found at i:37645 original size:2 final size:2
Alignment explanation
Indices: 37638--37687 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
37628 GTATGCGTGG
37638 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37680 AT AT AT AT
1 AT AT AT AT
37688 GAAAGGTGCA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:38321 original size:21 final size:21
Alignment explanation
Indices: 38295--38336 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
38285 CCAGAATAGG
*
38295 GGGAATCGGTACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
38316 GGGAATCGATACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
38337 ATATTCAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (21 bp):
GGGAATCGATACCCCTTCATA
Found at i:38617 original size:29 final size:31
Alignment explanation
Indices: 38585--38644 Score: 97
Period size: 29 Copynumber: 2.0 Consensus size: 31
38575 AAATTTTGAA
*
38585 TAAATTCAATT-AAGTCCAAATA-CATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
38614 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATTCAAGTCCAAAAACCATTTTG
38645 CGTTAAATTG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 11 0.39
30 10 0.36
31 7 0.25
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.35
Consensus pattern (31 bp):
TAAATTCAATTCAAGTCCAAAAACCATTTTG
Found at i:39932 original size:19 final size:20
Alignment explanation
Indices: 39889--39936 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
39879 TCTAAAACCT
*
39889 TTTTCAAAATTTCATTTTGG
1 TTTTCAAAATCTCATTTTGG
* *
39909 CTTTCAAAATCT-ATTTTTG
1 TTTTCAAAATCTCATTTTGG
39928 TTTTCAAAA
1 TTTTCAAAA
39937 GAAAATCGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.29, C:0.12, G:0.06, T:0.52
Consensus pattern (20 bp):
TTTTCAAAATCTCATTTTGG
Found at i:41316 original size:19 final size:19
Alignment explanation
Indices: 41292--41352 Score: 86
Period size: 19 Copynumber: 3.2 Consensus size: 19
41282 AGCATCGGGG
* *
41292 TACTGTTCACATAGTGATT
1 TACTGTTCAAATAGTAATT
41311 TACTGTTCAAATAGTAATT
1 TACTGTTCAAATAGTAATT
* *
41330 TACTGTTTAAATAGTAAAT
1 TACTGTTCAAATAGTAATT
41349 TACT
1 TACT
41353 ATTTATAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.43
Consensus pattern (19 bp):
TACTGTTCAAATAGTAATT
Found at i:41357 original size:19 final size:19
Alignment explanation
Indices: 41319--41357 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
41309 TTTACTGTTC
* *
41319 AAATAGTAATTTACTGTTT
1 AAATAGTAAATTACTATTT
41338 AAATAGTAAATTACTATTT
1 AAATAGTAAATTACTATTT
41357 A
1 A
41358 TAAAAACATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.44, C:0.05, G:0.08, T:0.44
Consensus pattern (19 bp):
AAATAGTAAATTACTATTT
Found at i:41490 original size:34 final size:29
Alignment explanation
Indices: 41422--41481 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
41412 AAATTTTGAA
* *
41422 TAAATTCAATTAAGTCCGAATACATTTTG
1 TAAATTCAATTAAGTCCAAAAACATTTTG
41451 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATT-AAGTCCAAAAA-CATTTTG
41482 CCTTAAATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 11 0.41
30 9 0.33
31 7 0.26
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (29 bp):
TAAATTCAATTAAGTCCAAAAACATTTTG
Found at i:43084 original size:14 final size:14
Alignment explanation
Indices: 43052--43078 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
43042 GAGGGATCAA
43052 ATTAATTTTTATTC
1 ATTAATTTTTATTC
43066 ATTAATTTTTATT
1 ATTAATTTTTATT
43079 TTTTAACAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.67
Consensus pattern (14 bp):
ATTAATTTTTATTC
Found at i:47928 original size:26 final size:26
Alignment explanation
Indices: 47890--47954 Score: 94
Period size: 27 Copynumber: 2.5 Consensus size: 26
47880 CATAAGTTAA
* *
47890 TTTTATTCGGGTTTTTTCAAACCGAT
1 TTTTAATCCGGTTTTTTCAAACCGAT
*
47916 TTTTAATCCGGTTTTTTTCAATCCGAT
1 TTTTAATCCGG-TTTTTTCAAACCGAT
47943 TTTTAATCCGGT
1 TTTTAATCCGGT
47955 AAAAAAATAG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
26 10 0.29
27 25 0.71
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.51
Consensus pattern (26 bp):
TTTTAATCCGGTTTTTTCAAACCGAT
Found at i:47933 original size:15 final size:15
Alignment explanation
Indices: 47901--47946 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
47891 TTTATTCGGG
*
47901 TTTTTTCAAACCGA-
1 TTTTTTCAATCCGAT
*
47915 -TTTTT-AATCCGGT
1 TTTTTTCAATCCGAT
47928 TTTTTTCAATCCGAT
1 TTTTTTCAATCCGAT
47943 TTTT
1 TTTT
47947 AATCCGGTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
12 5 0.19
13 5 0.19
14 5 0.19
15 11 0.42
ACGTcount: A:0.20, C:0.17, G:0.09, T:0.54
Consensus pattern (15 bp):
TTTTTTCAATCCGAT
Found at i:47941 original size:27 final size:27
Alignment explanation
Indices: 47901--47954 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
47891 TTTATTCGGG
47901 TTTTTTCAAACCGATTTTTAATCCGGT
1 TTTTTTCAAACCGATTTTTAATCCGGT
*
47928 TTTTTTCAATCCGATTTTTAATCCGGT
1 TTTTTTCAAACCGATTTTTAATCCGGT
47955 AAAAAAATAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.20, C:0.19, G:0.11, T:0.50
Consensus pattern (27 bp):
TTTTTTCAAACCGATTTTTAATCCGGT
Found at i:48500 original size:950 final size:940
Alignment explanation
Indices: 46033--49516 Score: 5170
Period size: 904 Copynumber: 3.7 Consensus size: 940
46023 AAATTGGTTT
*
46033 TTTTTCAAACCGATTTTTAATCCGGTAAAAAAA-CTGATTGTCTAA-TTTTTCCCAAACCGGTTA
1 TTTTTCAAACCGATTTTTAATCCGGTAAAAAAATC-GATCGTCTAATTTTTTCCCAAACCGGTTA
* * * ** * * *
46096 TACTATCTGATTTTTAAATATCTGATCCGGTTTAAAAAACCGGCTTTTCCCAAATCCAGTTTCGG
65 TACTATCCGGTTTTTAAATATCCGATCCGGTTTAAAAAACCGATTTTTACCAAATCTAATTTCGG
* * * * *
46161 ATATTTTTTACGTAAAATCGGATATTC-GAATTTTTTGTGTGTGC-CTCTAATGCTTGGATCTTG
130 ATAGTTTTTGCGCAAAATCGGATATTCAG-ATTTTTT-T-TGTACACTCTAGTGCTTGGATCTTG
* *
46224 AGATATCACCGGAATATC-GAACATTGCAATGCCCATAATGTCGAGCTTTGGGCAGTTCTAGATG
192 AGATATCACCGGAATATCAG-ACATTGCAATGCCCATAACGCCGAGCTTTGGGCAGTTCTAGATG
* *
46288 GACTCACGATTGCATGGAATCATGGCTTCAGGTATATTGAAGTC-ATGGCCGATAATAAGGATGT
256 GACTCACGATTGCATGGAATCATGGCTTCAGGAATATTGAAGTCGA-GGCCGATAATAAGGACGT
*
46352 GATTAAGATATTGAACCCTACTCCAAGGCTACGTATCGGGCAATGGAGCATTAAGATCTCTCATA
320 GATTAAGATATTGAACTCTACTCCAAGGCTACGTATCGGGCAATGGAGCATTAAGATCTCTCATA
*
46417 CTAATCGTGAAACCAATGCCATTGTTGATCATCTTGCTCATACTGATATTAATGACACTTTGGGA
385 CTAATCGTGAAACCAATGCCATTGCTGATCATCTTGCTCATACTGATATTAATGACACTTTGGGA
**
46482 CTCTCTATCTACCAACAGCCTCTTAGGGGAGTTCACACCCTTCTCAACACTGATGCTACTGCTGT
450 CTCTCTATCTACCAACAGCCTCCGAGGGGAGTTCACACCCTTCTCAACACTGATGCTACTGCTGT
46547 AGATACCCGATTAATCCACTACTAGTGTAGTGGTTTTATTTGTAACCAATAATAATAAGAATACC
515 AGATACCCGATTAATCCACTACTAGTGTAGTGGTTTTATTTGTAACCAATAATAATAAGAATACC
*
46612 TGGTTTTGTGGGTCGAGTACCTGACCCGCTCTTTTTCACGGGTTTCCAAGTCAGCATGGGTCACA
580 CGGTTTTGTGGGTCGAGTACCTGACCCGCTCTTTTTCACGGGTTTCCAAGTCAGCATGGGTCACA
*
46677 AAATATCTTTTAATTGGGTACCCACTCACCCAATACCTAGGTGGCGTTTGGTTCGTTGGAATATT
645 AAATATCTTTTAATTGGGTACCCACTCACCCAATACCTAGGTGGCGTTTGGTTCGCTGGAATATT
* * *
46742 TCTGATATGTCAGATGAATTTGATTTCAGTAATGTAAAATGACATGATTGCCCTTCTTATTTTGT
710 TCTGACATGTCAGATGAATTTAATTTCAGTAATGTAAAATGACAGGATTGCCCTTC-T-TTTT-T
* *
46807 TTGCTTAATTTTTGTTTGTTTTATAAATTACATATAGCAATGTATTATAAAAACTAAAAAAAAAT
772 TTGCTTAATTTTGGTTTGTTTTATAAATTACATATAGCAATATATTATAAAAACTAAAAAAAAA-
* * *
46872 TAAATTTTAATTTTATTGATTGATTATTAATTTCAATAAATTATAAAAAAACATCCTAATAAACA
836 TAAA-TTTAATTTTATTGATTGATTATTCATTTCAATAAATTAT-AAAAATCATGCTAATAAACA
*
46937 TCATAAGTTAATTTTATCCGG------------G------T-
899 TCATAAGTTAATTTTATCGGGTTTTTTCAAACCGTTTTTATC
* *
46960 TTTTTCAAACCGATTTTTAATCAGGTAAAAAAA-CGATCGTCTAATTTTTTTCCCAAACCAGTTA
1 TTTTTCAAACCGATTTTTAATCCGGTAAAAAAATCGATCGTCTAA-TTTTTTCCCAAACCGGTTA
* * *
47024 TACTATCAGGTTTTTAAATATCCGATCCGGTTTAAAAAAATCGGA-TTTTACCAAATATAATTTC
65 TACTATCCGGTTTTTAAATATCCGATCCGGTTT-AAAAAA-CCGATTTTTACCAAATCTAATTTC
* *
47088 GGATAGTTTTTGCGCAAAAACGGATATTCATATTTTTTTTGTACACCTCTAGTGCTTGGATCTTG
128 GGATAGTTTTTGCGCAAAATCGGATATTCAGATTTTTTTTGTACA-CTCTAGTGCTTGGATCTTG
* *
47153 AGATATCACCGGAATATCGGACATTGCAATGCCCATAATGCCGAGCTTTGGGCAGTTCTAGATGG
192 AGATATCACCGGAATATCAGACATTGCAATGCCCATAACGCCGAGCTTTGGGCAGTTCTAGATGG
*
47218 ACTCACTG-TTGCATGGAATCATGGCTTCAGGAATATTGAATTCGAGGCCGATAATAAGGACGTG
257 ACTCAC-GATTGCATGGAATCATGGCTTCAGGAATATTGAAGTCGAGGCCGATAATAAGGACGTG
*
47282 ATTAAGATATTGAACTCTACTCCAAGGTTGCATGAAGCGACCATTGTTCGACGTATCGCACAATG
321 ATTAAGATATTGAACTCTACTCCAA-G--GC-T--A-CG-----T-ATCG--G----G--CAATG
* *
47347 GAGCGTTAAGATCTCTCGTACTAATCGTGAAACCAATGCCATTGCTGATCATCTTGCTCATACTG
365 GAGCATTAAGATCTCTCATACTAATCGTGAAACCAATGCCATTGCTGATCATCTTGCTCATACTG
*
47412 ATATTAATGACACTTTGGGACTCTTTATCTACCAACAGCCTCCGAGGGGAGTTCACACCCTTCTC
430 ATATTAATGACACTTTGGGACTCTCTATCTACCAACAGCCTCCGAGGGGAGTTCACACCCTTCTC
47477 AACACTGATGCTACTGCTGTAGATACCCGATTAATCCACTACTAGTGTAGTGGTTTTATTTGTAA
495 AACACTGATGCTACTGCTGTAGATACCCGATTAATCCACTACTAGTGTAGTGGTTTTATTTGTAA
*
47542 CCAATAATAATAAGAATACCCGGTTTTGTGGGTCGAGTACTTGACCCGCTCTTTTTCACGGGTTT
560 CCAATAATAATAAGAATACCCGGTTTTGTGGGTCGAGTACCTGACCCGCTCTTTTTCACGGGTTT
*
47607 CCAAGTCAACATGGGTCACAAAATATCTTTTAATTGGGTACCCACTCACCCAATACCTAGGTGGC
625 CCAAGTCAGCATGGGTCACAAAATATCTTTTAATTGGGTACCCACTCACCCAATACCTAGGTGGC
* *
47672 GTTTGGTTCGCTGGAATATTTCTGACATGTCAGATGAATTTAATTTCAGTAAAGTAAAATGATAG
690 GTTTGGTTCGCTGGAATATTTCTGACATGTCAGATGAATTTAATTTCAGTAATGTAAAATGACAG
47737 GATTGCCCTTCTTCTTTTTTGCTTAATTTTGGTTTGTTTTATAAATTACATATAGCAATATATTA
755 GATTGCCCTTCTT-TTTTTTGCTTAATTTTGGTTTGTTTTATAAATTACATATAGCAATATATTA
*** ****
47802 T-AATTTTTTTTAAAAA-AAA-TTAATTTTATTGATTGATTATTCATTTCAATAAATTATAAAAA
819 TAAAAACTAAAAAAAAATAAATTTAATTTTATTGATTGATTATTCATTTCAATAAATTATAAAAA
47864 TCATGCTAATAAACATCATAAGTTAATTTTATTCGGGTTTTTTCAAACCGATTTTTAATCC
884 TCATGCTAATAAACATCATAAGTTAATTTTA-TCGGGTTTTTTCAAACCG-TTTTT-AT-C
* * *
47925 GGTTTTTTTCAATCCGATTTTTAATCCGGTAAAAAAATAGATCGTATAATTTTTTCCCAAACCGG
1 ----TTTTTCAAACCGATTTTTAATCCGGTAAAAAAATCGATCGTCTAATTTTTTCCCAAACCGG
*
47990 TTATACTATCCGGTTTTTAAATATCCGATCTGGTTTAAAAAAACCGATTTTTACCAAATCTAATT
62 TTATACTATCCGGTTTTTAAATATCCGATCCGGTTT-AAAAAACCGATTTTTACCAAATCTAATT
48055 TCGGATAGTTTTTGCGCAAAATCGGATATTC-GATTTTTTTTGTACACTTCTAGTGCTTGGATCT
126 TCGGATAGTTTTTGCGCAAAATCGGATATTCAGATTTTTTTTGTACAC-TCTAGTGCTTGGATCT
48119 TGAGATATCACCGGAATATCAGACATTGCAATGCCCATAACGCCGAGCTTTGGGCAGTTCTAGAT
190 TGAGATATCACCGGAATATCAGACATTGCAATGCCCATAACGCCGAGCTTTGGGCAGTTCTAGAT
*
48184 GGACTCACGGTTGCATGGAATCATGGCTTCAGGAATATTGAAGTCGAGGCCGATAATAAGGACGT
255 GGACTCACGATTGCATGGAATCATGGCTTCAGGAATATTGAAGTCGAGGCCGATAATAAGGACGT
*
48249 GATTAAGATATTGAACTCTACTCCAAGGCTACGTATCGGGCAATGGAGCATTAAGATCTCTCGTA
320 GATTAAGATATTGAACTCTACTCCAAGGCTACGTATCGGGCAATGGAGCATTAAGATCTCTCATA
*
48314 CTAATCGTGAAACCAATGCCATTGCTGATCATCTTGCTCATACCGATATTAATGACACTTTGGGA
385 CTAATCGTGAAACCAATGCCATTGCTGATCATCTTGCTCATACTGATATTAATGACACTTTGGGA
*
48379 CTCTTTATCTACCAACAGCCTCCGAGGGGAGTTCACACCCTTCTCAACACTGATGCTACTGCTGT
450 CTCTCTATCTACCAACAGCCTCCGAGGGGAGTTCACACCCTTCTCAACACTGATGCTACTGCTGT
*
48444 AGATACCCGATTAATCCACTACTAGTTTAGTGGTTTTATTTGTAACCAATAATAATAAGAATA-C
515 AGATACCCGATTAATCCACTACTAGTGTAGTGGTTTTATTTGTAACCAATAATAATAAGAATACC
**
48508 CAATTTTGTGGGTCGAGTACCTGACCCGCTCTTTTTCACGGGTTTCCAAGTCAGCATGGGTCACA
580 CGGTTTTGTGGGTCGAGTACCTGACCCGCTCTTTTTCACGGGTTTCCAAGTCAGCATGGGTCACA
* * *
48573 AAATATCTTTTAATTGGGTATCTACTCACCCAATACCTAGGTGGAGTTTGGTTCGCTGGAATATT
645 AAATATCTTTTAATTGGGTACCCACTCACCCAATACCTAGGTGGCGTTTGGTTCGCTGGAATATT
* * *
48638 TCTGACATGTCAGATGAATTTAATTTCAGTAATGTAAAATGACAGGATTGTCCTT-GTTTTTCTG
710 TCTGACATGTCAGATGAATTTAATTTCAGTAATGTAAAATGACAGGATTGCCCTTCTTTTTTTTG
* *
48702 CTTAATTTTGGTTTGTTTTATAAATTACATCTAGCAATATATTATAAAAACAAAAAAAAAATTAA
775 CTTAATTTTGGTTTGTTTTATAAATTACATATAGCAATATATTATAAAAACTAAAAAAAAA-TAA
*
48767 ATTTTAATTTTATTGATTGATTTTTCATTTCAATAAATTATAAAAATCATGCTAATAAACATCAT
839 A-TTTAATTTTATTGATTGATTATTCATTTCAATAAATTATAAAAATCATGCTAATAAACATCAT
*
48832 AACTTAATTTTA----------TC---CCGTTTTT-TC
903 AAGTTAATTTTATCGGGTTTTTTCAAACCGTTTTTATC
* *
48856 -----CAAACCGATTTTTAATCCGGTAAAAAAACCGACCGTCTAATTTTTTCCCCAAACCGGTTA
1 TTTTTCAAACCGATTTTTAATCCGGTAAAAAAATCGATCGTCTAATTTTTT-CCCAAACCGGTTA
*
48916 TACTATTCGGTTTTT-AA-AT---A-------T------CCGATTTTTACCAAATCTAATTTCGG
65 TACTATCCGGTTTTTAAATATCCGATCCGGTTTAAAAAACCGATTTTTACCAAATCTAATTTCGG
*
48963 ATAGTTTTTGCGCAAAATCGGATATTCGGA-TTTTTTTGTACACATCTAGTGCTTGGATCTTGAG
130 ATAGTTTTTGCGCAAAATCGGATATTCAGATTTTTTTTGTACAC-TCTAGTGCTTGGATCTTGAG
*
49027 ATATCACCGGAATATCAGACATTGCAATGCCCATAACGCCGAGCTTTGGGCAGTTCTAAATGGAC
194 ATATCACCGGAATATCAGACATTGCAATGCCCATAACGCCGAGCTTTGGGCAGTTCTAGATGGAC
*
49092 TCACGATTGCATGGAATCATGGCTTCAGGAATATTGAATTCGAGGCCGATAATAAGGACGTGATT
259 TCACGATTGCATGGAATCATGGCTTCAGGAATATTGAAGTCGAGGCCGATAATAAGGACGTGATT
* * * *
49157 AAGATATTGAACTCTACTCCAAGACTACGTATCGGGCAATAGAGCGTTAAGATCTCTTATACTAA
324 AAGATATTGAACTCTACTCCAAGGCTACGTATCGGGCAATGGAGCATTAAGATCTCTCATACTAA
49222 TCGTGAAACCAATGCCATTGCTGATCATCTTGCTCATACTGATATTAATGACACTTTGGGACTCT
389 TCGTGAAACCAATGCCATTGCTGATCATCTTGCTCATACTGATATTAATGACACTTTGGGACTCT
*
49287 CTATCTACCAACAGCCTCCGA-GGGATTTCACACCCTTCTCAACACTGATGCTACTGCTGTAGAT
454 CTATCTACCAACAGCCTCCGAGGGGAGTTCACACCCTTCTCAACACTGATGCTACTGCTGTAGAT
49351 ACCCGATTAATCCACTACTAGTGTAGTGGTTTTATTTGTAACCAATAATAATAAGAATACCCGGT
519 ACCCGATTAATCCACTACTAGTGTAGTGGTTTTATTTGTAACCAATAATAATAAGAATACCCGGT
49416 TTTGTGGGTCGAGTACCTGACCCGCTCTTTTTCACGGGTTTCCAAGTCAGCATGGGTCACAAAAT
584 TTTGTGGGTCGAGTACCTGACCCGCTCTTTTTCACGGGTTTCCAAGTCAGCATGGGTCACAAAAT
49481 ATCTTTTAATTGGGTACCCACTCACCCAATACCTAG
649 ATCTTTTAATTGGGTACCCACTCACCCAATACCTAG
49517 TTTCTTATAT
Statistics
Matches: 2369, Mismatches: 117, Indels: 165
0.89 0.04 0.06
Matches are distributed among these distances:
903 100 0.04
904 459 0.19
905 2 0.00
911 1 0.00
918 1 0.00
921 2 0.00
922 43 0.02
923 27 0.01
926 9 0.00
927 37 0.02
928 48 0.02
929 214 0.09
930 6 0.00
931 1 0.00
932 3 0.00
933 1 0.00
934 5 0.00
935 4 0.00
936 2 0.00
938 2 0.00
941 1 0.00
942 37 0.02
943 41 0.02
944 51 0.02
945 11 0.00
946 176 0.07
947 226 0.10
948 49 0.02
949 77 0.03
950 391 0.17
953 1 0.00
955 4 0.00
956 1 0.00
961 2 0.00
962 1 0.00
963 1 0.00
964 1 0.00
965 2 0.00
967 3 0.00
968 184 0.08
969 133 0.06
970 9 0.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (940 bp):
TTTTTCAAACCGATTTTTAATCCGGTAAAAAAATCGATCGTCTAATTTTTTCCCAAACCGGTTAT
ACTATCCGGTTTTTAAATATCCGATCCGGTTTAAAAAACCGATTTTTACCAAATCTAATTTCGGA
TAGTTTTTGCGCAAAATCGGATATTCAGATTTTTTTTGTACACTCTAGTGCTTGGATCTTGAGAT
ATCACCGGAATATCAGACATTGCAATGCCCATAACGCCGAGCTTTGGGCAGTTCTAGATGGACTC
ACGATTGCATGGAATCATGGCTTCAGGAATATTGAAGTCGAGGCCGATAATAAGGACGTGATTAA
GATATTGAACTCTACTCCAAGGCTACGTATCGGGCAATGGAGCATTAAGATCTCTCATACTAATC
GTGAAACCAATGCCATTGCTGATCATCTTGCTCATACTGATATTAATGACACTTTGGGACTCTCT
ATCTACCAACAGCCTCCGAGGGGAGTTCACACCCTTCTCAACACTGATGCTACTGCTGTAGATAC
CCGATTAATCCACTACTAGTGTAGTGGTTTTATTTGTAACCAATAATAATAAGAATACCCGGTTT
TGTGGGTCGAGTACCTGACCCGCTCTTTTTCACGGGTTTCCAAGTCAGCATGGGTCACAAAATAT
CTTTTAATTGGGTACCCACTCACCCAATACCTAGGTGGCGTTTGGTTCGCTGGAATATTTCTGAC
ATGTCAGATGAATTTAATTTCAGTAATGTAAAATGACAGGATTGCCCTTCTTTTTTTTGCTTAAT
TTTGGTTTGTTTTATAAATTACATATAGCAATATATTATAAAAACTAAAAAAAAATAAATTTAAT
TTTATTGATTGATTATTCATTTCAATAAATTATAAAAATCATGCTAATAAACATCATAAGTTAAT
TTTATCGGGTTTTTTCAAACCGTTTTTATC
Found at i:49659 original size:39 final size:39
Alignment explanation
Indices: 49568--49706 Score: 124
Period size: 39 Copynumber: 3.6 Consensus size: 39
49558 AATTCTGAAG
* *
49568 TTATTTCACTC-TAATATTCTAAATCT-CTAATTTCTTAAA
1 TTATTTCAC-CATAACATTATAAAT-TACTAATTTCTTAAA
*** *
49607 TTATTTTGTCATAA-ATTTATAAATTCCTAATTTCTTAAA
1 TTATTTCACCATAACA-TTATAAATTACTAATTTCTTAAA
* * *
49646 ATATTTCACCATAACATTCTAAATTATTAATTTCTTAAA
1 TTATTTCACCATAACATTATAAATTACTAATTTCTTAAA
* *
49685 TTA-TTCACCCTAACAATATAAA
1 TTATTTCACCATAACATTATAAA
49707 CTATTTTTCA
Statistics
Matches: 81, Mismatches: 15, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
38 19 0.23
39 61 0.75
40 1 0.01
ACGTcount: A:0.38, C:0.16, G:0.01, T:0.45
Consensus pattern (39 bp):
TTATTTCACCATAACATTATAAATTACTAATTTCTTAAA
Found at i:57864 original size:20 final size:20
Alignment explanation
Indices: 57841--57880 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
57831 TTTTCTTTTA
57841 GTTTTTCAATTGC-TTTCTTT
1 GTTTTT-AATTGCATTTCTTT
*
57861 GTTTTTACTTGCATTTCTTT
1 GTTTTTAATTGCATTTCTTT
57881 ATTTCTTGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.10, C:0.15, G:0.10, T:0.65
Consensus pattern (20 bp):
GTTTTTAATTGCATTTCTTT
Found at i:70330 original size:57 final size:60
Alignment explanation
Indices: 70257--70377 Score: 167
Period size: 57 Copynumber: 2.1 Consensus size: 60
70247 TTAAAATATA
* * *
70257 TAAATAATCATTTTATAACATTTAATAATTGAATAACTCAA-CAAA-AACACCTATAA-C
1 TAAAAAATCATTTTATAAAATTTAATAATTAAATAACTCAATCAAATAACACCTATAATC
* * *
70314 TAAAAAATTATTTTATAAAATTTAATAATTAAATGACTCAATTAAATAACACCTATAATC
1 TAAAAAATCATTTTATAAAATTTAATAATTAAATAACTCAATCAAATAACACCTATAATC
70374 TAAA
1 TAAA
70378 CCATTTATTT
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
57 36 0.65
58 3 0.05
59 11 0.20
60 5 0.09
ACGTcount: A:0.52, C:0.12, G:0.02, T:0.34
Consensus pattern (60 bp):
TAAAAAATCATTTTATAAAATTTAATAATTAAATAACTCAATCAAATAACACCTATAATC
Found at i:76423 original size:30 final size:30
Alignment explanation
Indices: 76370--76435 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
76360 GATTAGCACA
*
76370 GAACCGGCTGAAAACTGAGAAAACCGGGGT
1 GAACCGGCTGAAAACCGAGAAAACCGGGGT
* **
76400 GAACCGGTTGAAAACCG-GCAAAACCGGTTT
1 GAACCGGCTGAAAACCGAG-AAAACCGGGGT
76430 GAACCG
1 GAACCG
76436 CCAGTTCACT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 1 0.03
30 30 0.97
ACGTcount: A:0.35, C:0.23, G:0.30, T:0.12
Consensus pattern (30 bp):
GAACCGGCTGAAAACCGAGAAAACCGGGGT
Found at i:78797 original size:24 final size:24
Alignment explanation
Indices: 78770--78825 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
78760 TAGAAGTTCG
*
78770 ATTGAAGCCTAAAATTTGAGCTTA
1 ATTGAAGCCTAAAATTTGAGCTCA
78794 ATTGAAGCCTAAAATTTGAGCTCA
1 ATTGAAGCCTAAAATTTGAGCTCA
78818 ATTGAAGC
1 ATTGAAGC
78826 GAAAGAATAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (24 bp):
ATTGAAGCCTAAAATTTGAGCTCA
Found at i:83246 original size:17 final size:17
Alignment explanation
Indices: 83224--83258 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
83214 TTCGATTTAT
*
83224 ATGGTTATGCTTTATTA
1 ATGGTTATACTTTATTA
83241 ATGGTTATACTTTATTA
1 ATGGTTATACTTTATTA
83258 A
1 A
83259 CTTTTTCGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.06, G:0.14, T:0.51
Consensus pattern (17 bp):
ATGGTTATACTTTATTA
Found at i:83947 original size:20 final size:21
Alignment explanation
Indices: 83922--84014 Score: 100
Period size: 21 Copynumber: 4.5 Consensus size: 21
83912 TTTTCCCAAT
*
83922 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
83942 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
*
83963 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
83983 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
84004 TCGCAATGCGA
1 TCGCAATGCGA
84015 TACTGACTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 27 0.47
21 31 0.53
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:83967 original size:41 final size:41
Alignment explanation
Indices: 83922--84014 Score: 186
Period size: 41 Copynumber: 2.3 Consensus size: 41
83912 TTTTCCCAAT
83922 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
83963 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
84004 TCGCAATGCGA
1 TCGCAATGCGA
84015 TACTGACTAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.17
Consensus pattern (41 bp):
TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
Found at i:84027 original size:41 final size:41
Alignment explanation
Indices: 83941--84075 Score: 132
Period size: 41 Copynumber: 3.3 Consensus size: 41
83931 GAATAAGTAA
* *
83941 ATCGCAACGCGAATTGGGAAAATCGCAATGCGAATA-AGTA-A
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCG-ATACTG-ACT
83982 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
* * ** * * *
84023 ATCGCAATGCGATAAT-AAAAAATCGCAACGAGATACTTACT
1 ATCGCAACGCGA-ATTGGGAAAATCGCAATGCGATACTGACT
*
84064 TTCGCAACGCGA
1 ATCGCAACGCGA
84076 TACTGACTTT
Statistics
Matches: 80, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
40 4 0.05
41 74 0.93
42 2 0.03
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.19
Consensus pattern (41 bp):
ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
Found at i:84028 original size:20 final size:20
Alignment explanation
Indices: 84003--84097 Score: 91
Period size: 20 Copynumber: 4.7 Consensus size: 20
83993 AATTGGGAAA
*
84003 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * * **
84023 ATCGCAATGCGATAATAAAAA
1 ATCGCAACGCGATACT-GACT
* *
84044 ATCGCAACGAGATACTTACT
1 ATCGCAACGCGATACTGACT
*
84064 TTCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
*
84084 TTCGCAACGCGATA
1 ATCGCAACGCGATA
84098 ATACATAATC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 47 0.77
21 14 0.23
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:84318 original size:22 final size:22
Alignment explanation
Indices: 84293--84336 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
84283 CACTCTCTCA
84293 CCCATCTCCGACGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
*
84315 CCCATCTCCGGCGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
84337 TATCTAAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.45, G:0.16, T:0.18
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:84626 original size:20 final size:20
Alignment explanation
Indices: 84601--84638 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
84591 TGATTCTCTC
84601 GTTGCGATAGTCATTTTCGT
1 GTTGCGATAGTCATTTTCGT
**
84621 GTTGCGATTTTCATTTTC
1 GTTGCGATAGTCATTTTC
84639 AGAAACTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.16, G:0.21, T:0.50
Consensus pattern (20 bp):
GTTGCGATAGTCATTTTCGT
Found at i:85977 original size:18 final size:18
Alignment explanation
Indices: 85956--86000 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
85946 TCCACTTCGG
*
85956 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCACCCA
*
85974 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
85992 GAGCCATCA
1 GAGCCATCA
86001 TCTGATCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.27, C:0.44, G:0.16, T:0.13
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:86501 original size:20 final size:19
Alignment explanation
Indices: 86478--86601 Score: 72
Period size: 19 Copynumber: 7.1 Consensus size: 19
86468 TGCAACACGA
*
86478 AAATGACTATCGCAACGCGG
1 AAATGAATATCGCAACGC-G
** *
86498 AAATGGTTATCGCAATGCG
1 AAATGAATATCGCAACGCG
*
86517 AAATGAAAATCGCAA--CG
1 AAATGAATATCGCAACGCG
* *
86534 ACA--AA-ATCGCAATGCG
1 AAATGAATATCGCAACGCG
86550 AAATGAA-ATCGCAA--CG
1 AAATGAATATCGCAACGCG
*
86566 ACA--AA-ATCGCAACGCG
1 AAATGAATATCGCAACGCG
* *
86582 AAATGAAAATCGCAATGCG
1 AAATGAATATCGCAACGCG
86601 A
1 A
86602 TTTGTGTTTC
Statistics
Matches: 84, Mismatches: 11, Indels: 19
0.74 0.10 0.17
Matches are distributed among these distances:
14 16 0.19
15 2 0.02
16 12 0.14
17 4 0.05
18 11 0.13
19 24 0.29
20 15 0.18
ACGTcount: A:0.44, C:0.21, G:0.21, T:0.15
Consensus pattern (19 bp):
AAATGAATATCGCAACGCG
Found at i:86541 original size:14 final size:14
Alignment explanation
Indices: 86522--86579 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
86512 ATGCGAAATG
86522 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
86536 AAAATCGCAATGCGAA
1 AAAATCGCAA--CGAC
86552 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
86568 AAAATCGCAACG
1 AAAATCGCAACG
86580 CGAAATGAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.48, C:0.24, G:0.17, T:0.10
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:86564 original size:32 final size:33
Alignment explanation
Indices: 86506--86596 Score: 166
Period size: 32 Copynumber: 2.8 Consensus size: 33
86496 GGAAATGGTT
86506 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
86539 ATCGCAATGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
*
86571 ATCGCAACGCGAAATGAAAATCGCAA
1 ATCGCAATGCGAAATGAAAATCGCAA
86597 TGCGATTTGT
Statistics
Matches: 56, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
32 31 0.55
33 25 0.45
ACGTcount: A:0.47, C:0.22, G:0.19, T:0.12
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Found at i:86632 original size:14 final size:14
Alignment explanation
Indices: 86613--86670 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
86603 TTGTGTTTCG
86613 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
86627 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
86643 CGCGTTGCGATTTTGT
1 --CGTTGCGATTTTGT
*
86659 CATTGCGATTTT
1 CGTTGCGATTTT
86671 CATTTCGCAT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
14 22 0.59
16 4 0.11
18 11 0.30
ACGTcount: A:0.10, C:0.17, G:0.24, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:86647 original size:32 final size:33
Alignment explanation
Indices: 86608--86686 Score: 133
Period size: 32 Copynumber: 2.4 Consensus size: 33
86598 GCGATTTGTG
*
86608 TTTCGCGTTGCGATTTTGTCGTTGCGA-TTTCA
1 TTTCGCGTTGCGATTTTGTCATTGCGATTTTCA
86640 TTTCGCGTTGCGATTTTGTCATTGCGATTTTCA
1 TTTCGCGTTGCGATTTTGTCATTGCGATTTTCA
*
86673 TTTCGCATTGCGAT
1 TTTCGCGTTGCGAT
86687 AGCCATTTCC
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
32 26 0.59
33 18 0.41
ACGTcount: A:0.11, C:0.19, G:0.23, T:0.47
Consensus pattern (33 bp):
TTTCGCGTTGCGATTTTGTCATTGCGATTTTCA
Found at i:86683 original size:19 final size:19
Alignment explanation
Indices: 86659--86725 Score: 80
Period size: 19 Copynumber: 3.5 Consensus size: 19
86649 GCGATTTTGT
**
86659 CATTGCGATTTTCATTTCG
1 CATTGCGATAGTCATTTCG
*
86678 CATTGCGATAGCCATTTCCG
1 CATTGCGATAGTCATTT-CG
*
86698 CGTTGCGATAGTCATTTCG
1 CATTGCGATAGTCATTTCG
*
86717 CGTTGCGAT
1 CATTGCGAT
86726 TTTAAGTTTC
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
19 25 0.60
20 17 0.40
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.37
Consensus pattern (19 bp):
CATTGCGATAGTCATTTCG
Found at i:86705 original size:20 final size:19
Alignment explanation
Indices: 86671--86725 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 19
86661 TTGCGATTTT
*
86671 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
86690 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
86710 CATTTCGCGTTGCGAT
1 CATTTCGCGTTGCGAT
86726 TTTAAGTTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 16 0.48
20 17 0.52
ACGTcount: A:0.16, C:0.25, G:0.24, T:0.35
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:88752 original size:13 final size:14
Alignment explanation
Indices: 88734--88786 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 14
88724 CGAAATGGCT
88734 ATCGCAACGAG-AA
1 ATCGCAACGAGAAA
88747 ATCGCAATGCGAAATGAAA
1 ATCGCAA--CG--A-GAAA
88766 ATCGCAACGAGAAA
1 ATCGCAACGAGAAA
88780 ATCGCAA
1 ATCGCAA
88787 TGCGATTTTC
Statistics
Matches: 34, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
13 7 0.21
14 11 0.32
15 3 0.09
17 3 0.09
18 1 0.03
19 9 0.26
ACGTcount: A:0.47, C:0.21, G:0.21, T:0.11
Consensus pattern (14 bp):
ATCGCAACGAGAAA
Found at i:88759 original size:32 final size:33
Alignment explanation
Indices: 88715--88791 Score: 111
Period size: 32 Copynumber: 2.4 Consensus size: 33
88705 AAAACAGACT
* ***
88715 ATCGCAACGCGAAATGGCTATCGCAACGAG-AA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAAA
88747 ATCGCAATGCGAAATGAAAATCGCAACGAGAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAAA
88780 ATCGCAATGCGA
1 ATCGCAATGCGA
88792 TTTTCATTTC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 26 0.65
33 14 0.35
ACGTcount: A:0.42, C:0.22, G:0.23, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAAA
Found at i:88767 original size:19 final size:17
Alignment explanation
Indices: 88745--88791 Score: 55
Period size: 14 Copynumber: 2.8 Consensus size: 17
88735 TCGCAACGAG
88745 AAATCGCAATGCGAAATGA
1 AAATCGCAATGCG-AA-GA
88764 AAATCGCAA--CG-AGA
1 AAATCGCAATGCGAAGA
88778 AAATCGCAATGCGA
1 AAATCGCAATGCGA
88792 TTTTCATTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
14 11 0.44
15 1 0.04
16 2 0.08
17 2 0.08
19 9 0.36
ACGTcount: A:0.47, C:0.19, G:0.21, T:0.13
Consensus pattern (17 bp):
AAATCGCAATGCGAAGA
Found at i:89934 original size:24 final size:24
Alignment explanation
Indices: 89907--89960 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
89897 GTATTCGAAA
* *
89907 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGGTCAATACACGGAC
*
89931 TTTGATATTGGTCAATACACGGAT
1 TTTGATATTGGTCAATACACGGAC
89955 TTTGAT
1 TTTGAT
89961 GATGTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (24 bp):
TTTGATATTGGTCAATACACGGAC
Found at i:92322 original size:42 final size:42
Alignment explanation
Indices: 92267--92359 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 42
92257 CCTCTTCAAC
* * * * *
92267 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAG-
1 GATGATAGGGGCCTCTTCAACGATAGGAGGGGACTCTCGAGA
* *
92308 GAATGATAGGGGCCTCTTCAACGATAGGAGTGGACTCTTGAGA
1 G-ATGATAGGGGCCTCTTCAACGATAGGAGGGGACTCTCGAGA
92351 GATGATAGG
1 GATGATAGG
92360 CGAGTCGGGC
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
41 1 0.02
42 41 0.95
43 1 0.02
ACGTcount: A:0.25, C:0.16, G:0.38, T:0.22
Consensus pattern (42 bp):
GATGATAGGGGCCTCTTCAACGATAGGAGGGGACTCTCGAGA
Found at i:94386 original size:20 final size:19
Alignment explanation
Indices: 94355--94534 Score: 121
Period size: 19 Copynumber: 9.8 Consensus size: 19
94345 TCTTTTGGTT
94355 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGA
* *
94374 GATAATGAGAATCGCAACGCG
1 GA-AATGAAAATCGCAACG-A
**
94395 GAAATGACTATCGCAACGA
1 GAAATGAAAATCGCAACGA
*
94414 G--A-G--AATCGCAACGC
1 GAAATGAAAATCGCAACGA
**
94428 GAAATGACTATCG---CGA
1 GAAATGAAAATCGCAACGA
** *
94444 -CCA-GACAATCGCAAC-A
1 GAAATGAAAATCGCAACGA
*
94460 CGAAATGAAAATCGCAACCGC
1 -GAAATGAAAATCGCAA-CGA
* *
94481 GAAATAAAAATCGCAACGC
1 GAAATGAAAATCGCAACGA
*
94500 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGA
94519 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
94535 TGCGATTTTG
Statistics
Matches: 128, Mismatches: 18, Indels: 30
0.73 0.10 0.17
Matches are distributed among these distances:
14 17 0.13
15 1 0.01
16 5 0.04
17 3 0.02
18 1 0.01
19 54 0.42
20 45 0.35
21 2 0.02
ACGTcount: A:0.45, C:0.22, G:0.21, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGA
Found at i:94437 original size:33 final size:33
Alignment explanation
Indices: 94380--94478 Score: 135
Period size: 33 Copynumber: 3.0 Consensus size: 33
94370 ACGAGATAAT
*
94380 GAGAATCGCAACGCGGAAATGACTATCGCAACGA
1 GAGAATCGCAACGC-GAAATGACTATCGCAACCA
*
94414 GAGAATCGCAACGCGAAATGACTATCGCGACCA
1 GAGAATCGCAACGCGAAATGACTATCGCAACCA
* * **
94447 GACAATCGCAACACGAAATGAAAATCGCAACC
1 GAGAATCGCAACGCGAAATGACTATCGCAACC
94479 GCGAAATAAA
Statistics
Matches: 58, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
33 44 0.76
34 14 0.24
ACGTcount: A:0.40, C:0.26, G:0.22, T:0.11
Consensus pattern (33 bp):
GAGAATCGCAACGCGAAATGACTATCGCAACCA
Found at i:94474 original size:19 final size:19
Alignment explanation
Indices: 94450--94539 Score: 144
Period size: 19 Copynumber: 4.7 Consensus size: 19
94440 GCGACCAGAC
*
94450 AATCGCAACACGAAATGAA
1 AATCGCAACGCGAAATGAA
*
94469 AATCGCAACCGCGAAATAAA
1 AATCGCAA-CGCGAAATGAA
94489 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
94508 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
94527 AATCGCAATGCGA
1 AATCGCAACGCGA
94540 TTTTGGTTTC
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
19 49 0.74
20 17 0.26
ACGTcount: A:0.48, C:0.22, G:0.19, T:0.11
Consensus pattern (19 bp):
AATCGCAACGCGAAATGAA
Found at i:94493 original size:39 final size:38
Alignment explanation
Indices: 94450--94534 Score: 143
Period size: 39 Copynumber: 2.2 Consensus size: 38
94440 GCGACCAGAC
94450 AATCGCAACACGAAATGAAAATCGCAACCGCGAAATAAA
1 AATCGCAACACGAAATGAAAATCGCAA-CGCGAAATAAA
* *
94489 AATCGCAACGCGAAATGAAAATCGCAACGCGAAATGAA
1 AATCGCAACACGAAATGAAAATCGCAACGCGAAATAAA
94527 AATCGCAA
1 AATCGCAA
94535 TGCGATTTTG
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
38 18 0.41
39 26 0.59
ACGTcount: A:0.49, C:0.22, G:0.18, T:0.11
Consensus pattern (38 bp):
AATCGCAACACGAAATGAAAATCGCAACGCGAAATAAA
Found at i:94561 original size:19 final size:19
Alignment explanation
Indices: 94539--94575 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
94529 TCGCAATGCG
*
94539 ATTTTGGTTTCGCGTTGCA
1 ATTTTGATTTCGCGTTGCA
*
94558 ATTTTTATTTCGCGTTGC
1 ATTTTGATTTCGCGTTGC
94576 GATAGTTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.11, C:0.16, G:0.22, T:0.51
Consensus pattern (19 bp):
ATTTTGATTTCGCGTTGCA
Found at i:94593 original size:20 final size:19
Alignment explanation
Indices: 94546--94598 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
94536 GCGATTTTGG
* **
94546 TTTCGCGTTGCAATTTTTA
1 TTTCGCGTTGCGATAGTTA
94565 TTTCGCGTTGCGATAGTTA
1 TTTCGCGTTGCGATAGTTA
94584 TTTCCGCGTTGCGAT
1 TTT-CGCGTTGCGAT
94599 TTTCATTCTC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 19 0.63
20 11 0.37
ACGTcount: A:0.13, C:0.19, G:0.23, T:0.45
Consensus pattern (19 bp):
TTTCGCGTTGCGATAGTTA
Found at i:95145 original size:20 final size:20
Alignment explanation
Indices: 95120--95171 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
95110 CGCTATGTAA
*
95120 ATCGCGTTGCGAAAGTCAGT
1 ATCGCGTTGCGAAAGTAAGT
95140 ATCGCGTTGCGAAAGTAAGT
1 ATCGCGTTGCGAAAGTAAGT
*
95160 ATCTCGTTGCGA
1 ATCGCGTTGCGA
95172 TTTTTTATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (20 bp):
ATCGCGTTGCGAAAGTAAGT
Found at i:95206 original size:21 final size:21
Alignment explanation
Indices: 95182--95274 Score: 91
Period size: 20 Copynumber: 4.5 Consensus size: 21
95172 TTTTTTATTA
*
95182 TCGCATTGCTATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
95203 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
95223 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
95244 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
95264 TCGCATTGCGA
1 TCGCATTGCGA
95275 ATTGGGAAAA
Statistics
Matches: 57, Mismatches: 14, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
20 32 0.56
21 25 0.44
ACGTcount: A:0.17, C:0.25, G:0.17, T:0.41
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCCAAT
Found at i:95226 original size:20 final size:20
Alignment explanation
Indices: 95201--95274 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
95191 TATTTTCCCA
*
95201 ATTCGCGTTGCGATTTACTT
1 ATTCGCATTGCGATTTACTT
* **
95221 ATTCGCATTGCGATTTTCCCA
1 ATTCGCATTGCGA-TTTACTT
*
95242 ATTCGCGTTGCGATTTACTT
1 ATTCGCATTGCGATTTACTT
95262 ATTCGCATTGCGA
1 ATTCGCATTGCGA
95275 ATTGGGAAAA
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.18, C:0.23, G:0.19, T:0.41
Consensus pattern (20 bp):
ATTCGCATTGCGATTTACTT
Found at i:95237 original size:41 final size:41
Alignment explanation
Indices: 95164--95274 Score: 179
Period size: 41 Copynumber: 2.7 Consensus size: 41
95154 GTAAGTATCT
* *
95164 CGTTGCGATTT-TTTATTATCGCATTGCTATTTTCCCAATTCG
1 CGTTGCGATTTACTTA-T-TCGCATTGCGATTTTCCCAATTCG
95206 CGTTGCGATTTACTTATTCGCATTGCGATTTTCCCAATTCG
1 CGTTGCGATTTACTTATTCGCATTGCGATTTTCCCAATTCG
95247 CGTTGCGATTTACTTATTCGCATTGCGA
1 CGTTGCGATTTACTTATTCGCATTGCGA
95275 ATTGGGAAAA
Statistics
Matches: 66, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
41 51 0.77
42 12 0.18
43 3 0.05
ACGTcount: A:0.17, C:0.23, G:0.17, T:0.43
Consensus pattern (41 bp):
CGTTGCGATTTACTTATTCGCATTGCGATTTTCCCAATTCG
Found at i:100543 original size:27 final size:27
Alignment explanation
Indices: 100505--100561 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
100495 GTCAATTGGT
100505 TGCTCATATACTTGCATCTGAATAGGA
1 TGCTCATATACTTGCATCTGAATAGGA
100532 TGCTCATATACTTGCATCTGAATAGGA
1 TGCTCATATACTTGCATCTGAATAGGA
100559 TGC
1 TGC
100562 AATGGTTTCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.33
Consensus pattern (27 bp):
TGCTCATATACTTGCATCTGAATAGGA
Found at i:122296 original size:2 final size:2
Alignment explanation
Indices: 122285--122315 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
122275 GCCTCCTTCC
122285 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
122316 AAGTTTTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:122872 original size:36 final size:36
Alignment explanation
Indices: 122798--122872 Score: 98
Period size: 36 Copynumber: 2.1 Consensus size: 36
122788 TTTTTATATT
*
122798 TTTAATTTTGTAAAAAAATTATATAAATATTATGAA
1 TTTAATTTTGTAAAAAAATTATATAAATATTATCAA
* * *
122834 TTTAATTTTTTAAAGAAA-TATATAAATATTTTACAA
1 TTTAATTTTGTAAAAAAATTATATAAATATTAT-CAA
122870 TTT
1 TTT
122873 GTAATATTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
35 13 0.38
36 21 0.62
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.48
Consensus pattern (36 bp):
TTTAATTTTGTAAAAAAATTATATAAATATTATCAA
Found at i:123053 original size:20 final size:20
Alignment explanation
Indices: 123017--123054 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
123007 ATCCTATTCC
**
123017 CTGGTAATCTTTTATTCCCA
1 CTGGTAATCTTACATTCCCA
123037 CTGGTAATCTTACATTCC
1 CTGGTAATCTTACATTCC
123055 GTGAACCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (20 bp):
CTGGTAATCTTACATTCCCA
Found at i:124873 original size:20 final size:20
Alignment explanation
Indices: 124837--124902 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
124827 TACTGAATGT
124837 AAGATTAT-AGTGGGAATAA
1 AAGATTATCAGTGGGAATAA
*
124856 AAGATTATCAGTGAGAATAA
1 AAGATTATCAGTGGGAATAA
124876 AAGATTATCAGTGGGAATAA
1 AAGATTATCAGTGGGAATAA
*
124896 AATATTA
1 AAGATTA
124903 CCAGGGACTA
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
19 8 0.19
20 35 0.81
ACGTcount: A:0.48, C:0.03, G:0.21, T:0.27
Consensus pattern (20 bp):
AAGATTATCAGTGGGAATAA
Found at i:125063 original size:15 final size:15
Alignment explanation
Indices: 125045--125075 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
125035 AAATTCTAAA
125045 TATTTAAATAAAAAT
1 TATTTAAATAAAAAT
*
125060 TATTTATATAAAAAT
1 TATTTAAATAAAAAT
125075 T
1 T
125076 CTATCTGTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TATTTAAATAAAAAT
Found at i:131390 original size:29 final size:29
Alignment explanation
Indices: 131351--131416 Score: 132
Period size: 29 Copynumber: 2.3 Consensus size: 29
131341 TTTTTAAGTA
131351 CCGACTATTAGAAGTTACACAATGGTTAC
1 CCGACTATTAGAAGTTACACAATGGTTAC
131380 CCGACTATTAGAAGTTACACAATGGTTAC
1 CCGACTATTAGAAGTTACACAATGGTTAC
131409 CCGACTAT
1 CCGACTAT
131417 CATATGTTCC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (29 bp):
CCGACTATTAGAAGTTACACAATGGTTAC
Done.