Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009020.1 Hibiscus syriacus cultivar Beakdansim tig00112410_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 107425
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Found at i:3035 original size:8 final size:8
Alignment explanation
Indices: 3024--3664 Score: 293
Period size: 8 Copynumber: 84.8 Consensus size: 8
3014 ATTATTTAAC
3024 TTTAATGA
1 TTTAATGA
3032 TTTAAT-A
1 TTTAATGA
* *
3039 -ATAATTA
1 TTTAATGA
*
3046 TTTAA--C
1 TTTAATGA
3052 TTTAATGA
1 TTTAATGA
3060 TTTAAT-A
1 TTTAATGA
* *
3067 -ATAATTA
1 TTTAATGA
*
3074 TTTAA--C
1 TTTAATGA
3080 TTTAATGA
1 TTTAATGA
3088 TTTAAT-A
1 TTTAATGA
* *
3095 -ATAATTA
1 TTTAATGA
3102 CTTTAATGA
1 -TTTAATGA
*
3111 TTTAA--C
1 TTTAATGA
3117 TTTAATGA
1 TTTAATGA
*
3125 TTTAATAATAA
1 -TT--TAATGA
3136 TTTAAT--
1 TTTAATGA
3142 TTTAATGA
1 TTTAATGA
3150 TTTAAT-A
1 TTTAATGA
* *
3157 -ATAATTA
1 TTTAATGA
3164 CTTTAATGA
1 -TTTAATGA
3173 TTTAAT--
1 TTTAATGA
3179 TTTAATGA
1 TTTAATGA
3187 TTTAATGA
1 TTTAATGA
*
3195 TTTAA--C
1 TTTAATGA
3201 TTTAATGGA
1 TTTAAT-GA
*
3210 TTTAATAATTA
1 -TT--TAATGA
3221 CTTTAATGA
1 -TTTAATGA
3230 -TTAAT--
1 TTTAATGA
3235 TTTAATGA
1 TTTAATGA
3243 TTTAAT-A
1 TTTAATGA
* *
3250 -ATAATTA
1 TTTAATGA
3257 CTTTAATGA
1 -TTTAATGA
*
3266 TTTAA--C
1 TTTAATGA
3272 TTTAATGA
1 TTTAATGA
3280 -TTAAT-A
1 TTTAATGA
* **
3286 -ATAATTC
1 TTTAATGA
3293 TTTAATGA
1 TTTAATGA
3301 TTTAATGA
1 TTTAATGA
*
3309 TTTAACTTTA
1 TTTAA--TGA
3319 TTTTTAAT-A
1 --TTTAATGA
* *
3328 -ATAATTA
1 TTTAATGA
3335 CTTTAATGA
1 -TTTAATGA
*
3344 TTTAA--C
1 TTTAATGA
3350 TTTAATGA
1 TTTAATGA
3358 TTTAAT-A
1 TTTAATGA
* *
3365 -ATAATTA
1 TTTAATGA
3372 CTTT-ATGA
1 -TTTAATGA
3380 TTTAATGA
1 TTTAATGA
3388 TTTAATGA
1 TTTAATGA
3396 TTTAAT-A
1 TTTAATGA
*
3403 --TAATTA
1 TTTAATGA
3409 CTTTAATGA
1 -TTTAATGA
3418 TTTAATGA
1 TTTAATGA
*
3426 TTTAATAA
1 TTTAATGA
3434 TTTAATGA
1 TTTAATGA
3442 TTTAATGA
1 TTTAATGA
3450 TTTAAT-A
1 TTTAATGA
* *
3457 -ATAATTA
1 TTTAATGA
3464 CTTTAATGA
1 -TTTAATGA
*
3473 TTTAA--C
1 TTTAATGA
3479 TTTAATGA
1 TTTAATGA
3487 TTTAAT-A
1 TTTAATGA
* *
3494 -ATAATTA
1 TTTAATGA
3501 CTTTAATGA
1 -TTTAATGA
3510 TTTAATGA
1 TTTAATGA
3518 TTTAATGA
1 TTTAATGA
3526 TTTAATGA
1 TTTAATGA
3534 TTTAAT-A
1 TTTAATGA
* *
3541 -ATAATTA
1 TTTAATGA
3548 TTTTAATGA
1 -TTTAATGA
3557 TTTAATGA
1 TTTAATGA
3565 TTTAATGA
1 TTTAATGA
3573 TTTAATGA
1 TTTAATGA
3581 TTTAAT-A
1 TTTAATGA
* * *
3588 -ATCATTA
1 TTTAATGA
3595 CTTTAATGA
1 -TTTAATGA
3604 TTT-A--A
1 TTTAATGA
*
3609 TTTAATAA
1 TTTAATGA
3617 TTTAAT-A
1 TTTAATGA
* *
3624 -ATAATTA
1 TTTAATGA
*
3631 CTTAAT--
1 TTTAATGA
3637 TTTAATGA
1 TTTAATGA
3645 TTTAAT--
1 TTTAATGA
3651 TTTAATGA
1 TTTAATGA
3659 TTTAAT
1 TTTAAT
3665 AATAATTACT
Statistics
Matches: 491, Mismatches: 63, Indels: 158
0.69 0.09 0.22
Matches are distributed among these distances:
5 8 0.02
6 117 0.24
7 38 0.08
8 251 0.51
9 53 0.11
10 7 0.01
11 8 0.02
12 9 0.02
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.50
Consensus pattern (8 bp):
TTTAATGA
Found at i:3057 original size:62 final size:58
Alignment explanation
Indices: 3049--3477 Score: 111
Period size: 55 Copynumber: 7.3 Consensus size: 58
3039 ATAATTATTT
* * *
3049 AACTTTAATGATTTAATAATAATTA-TTTAA-CT--T-TAATGATTTAATAA-TAATT
1 AACTTTAATGATTTAATAATAATTACTTTAATTTAATATAATTATTTAATAATTATTT
* * * * * *
3101 -ACTTTAATGATTTAACTTTAATGATTTAATAATAATTTAATTTTAATGATTTAATAA-TAATT
1 AACTTTAATGATTTAA---TAAT-AATTACT-TTAATTTAA-TATAATTATTTAATAATTATTT
** * * *
3163 -ACTTTAATGATTTAATTTTAATGA-TTTAATGATTTAACTTTAATGGATTTAATAATTACTTTA
1 AACTTTAATGATTTAATAATAATTACTTT-A--ATTTAA-TATAAT-TATTTAATAATTA--TT-
3226 AT
58 -T
* * * *
3228 GATTAATTTTAATGATTTAATAATAATTACTTTAATGATTTAACTTTAATGA-TTAATAA-TAAT
1 -A--ACTTT-AATGATTTAATAATAATTACTTT-A--ATTTAA-TATAATTATTTAATAATTATT
3291 T
58 T
* * * *
3292 --CTTTAATGATTTAATGAT--TTAACTTTATTTTTAATAATAATTACTT--TAATGATTT
1 AACTTTAATGATTTAATAATAATT-ACTTTA-ATTTAAT-ATAATTATTTAATAATTATTT
* *
3347 AACTTTAATGATTTAATAATAATTACTTTATGATTTAATGATTTAATGATTTAAT-A-TAATT
1 AACTTTAATGATTTAATAATAATTACTTTA--ATTTAAT-A--TAATTATTTAATAATTATTT
* * * *
3408 -ACTTTAATGATTTAATGAT--TTA--ATAATTTAATGATTTAATGATTTAATAA-TAATT
1 AACTTTAATGATTTAATAATAATTACTTTAATTTAAT-A--TAATTATTTAATAATTATTT
3463 -ACTTTAATGATTTAA
1 AACTTTAATGATTTAA
3478 CTTTAATGAT
Statistics
Matches: 304, Mismatches: 33, Indels: 77
0.73 0.08 0.19
Matches are distributed among these distances:
51 15 0.05
54 31 0.10
55 38 0.12
56 9 0.03
57 27 0.09
58 26 0.09
59 26 0.09
60 28 0.09
61 13 0.04
62 35 0.12
63 2 0.01
64 1 0.00
65 1 0.00
66 1 0.00
68 2 0.01
69 11 0.04
70 18 0.06
71 20 0.07
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.50
Consensus pattern (58 bp):
AACTTTAATGATTTAATAATAATTACTTTAATTTAATATAATTATTTAATAATTATTT
Found at i:3295 original size:21 final size:22
Alignment explanation
Indices: 3270--3345 Score: 79
Period size: 21 Copynumber: 3.5 Consensus size: 22
3260 TAATGATTTA
3270 ACTTTAATGATTAATAATAATT
1 ACTTTAATGATTAATAATAATT
*
3292 -CTTTAATGATT--TAATGATTT
1 ACTTTAATGATTAATAAT-AATT
**
3312 AACTTT-ATTTTTAATAATAATT
1 -ACTTTAATGATTAATAATAATT
3334 ACTTTAATGATT
1 ACTTTAATGATT
3346 TAACTTTAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
19 4 0.10
20 3 0.07
21 20 0.48
22 11 0.26
23 4 0.10
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.51
Consensus pattern (22 bp):
ACTTTAATGATTAATAATAATT
Found at i:3476 original size:39 final size:38
Alignment explanation
Indices: 3388--3570 Score: 171
Period size: 39 Copynumber: 4.8 Consensus size: 38
3378 GATTTAATGA
* * *
3388 TTTAATGATTTAATA--TAATTACTTTAATGATTTAATGA-
1 TTTAATGATTTAATATTTAATGA-TTTAAT-A-ATAATTAC
*
3426 TTTAATAATTTAATGATTTAATGATTTAATAATAATTAC
1 TTTAATGATTTAAT-ATTTAATGATTTAATAATAATTAC
*
3465 TTTAATGATTTAA-CTTTAATGATTTAATAATAATTAC
1 TTTAATGATTTAATATTTAATGATTTAATAATAATTAC
* *
3502 TTTAATGATTTAATGATTTAATGATTTAATGAT--TTAA
1 TTTAATGATTTAAT-ATTTAATGATTTAATAATAATTAC
* *
3539 TAATAATTATTTTAATGATTTAATGATTTAAT
1 T-TTAATGA-TTTAAT-ATTTAATGATTTAAT
3571 GATTTAATGA
Statistics
Matches: 126, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
37 40 0.32
38 23 0.18
39 52 0.41
40 6 0.05
41 5 0.04
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.50
Consensus pattern (38 bp):
TTTAATGATTTAATATTTAATGATTTAATAATAATTAC
Found at i:3553 original size:47 final size:47
Alignment explanation
Indices: 2991--3664 Score: 361
Period size: 47 Copynumber: 15.9 Consensus size: 47
2981 CGAGTACATA
* *
2991 TTAATAATAATTA-TTTAA--ATTTAATTATTTAA--CTTTAATGAT
1 TTAATAATAATTACTTTAATGATTTAATGATTTAATGATTTAATGAT
* * *
3033 TTAATAATAATTA-TTTAA--CTTTAATGATTTAAT-A-ATAATTAT
1 TTAATAATAATTACTTTAATGATTTAATGATTTAATGATTTAATGAT
* * * * *
3075 TTAACTTTAATGATTTAATAATAATTACTTTAATGATTTAA--CTTTAATGAT
1 TTAA---TAAT-AATTACT-TTAATGA-TTTAATGATTTAATGATTTAATGAT
* *
3126 TTAATAAT-A--A-TTTAAT--TTTAATGATTTAAT-A-ATAATTACT
1 TTAATAATAATTACTTTAATGATTTAATGATTTAATGATTTAATGA-T
* * *
3166 TTAATGAT--TTAATTTTAATGATTTAATGATTTAA--CTTTAATGGA-
1 TTAATAATAATT-ACTTTAATGATTTAATGATTTAATGATTTAAT-GAT
3210 TT--TAATAATTACTTTAATGA-TT-A-------AT--TTTAATGAT
1 TTAATAATAATTACTTTAATGATTTAATGATTTAATGATTTAATGAT
*
3244 TTAATAATAATTACTTTAATGA-TT--T-----AA--CTTTAATGA-
1 TTAATAATAATTACTTTAATGATTTAATGATTTAATGATTTAATGAT
* *
3280 TTAATAATAATT-CTTTAATGATTTAATGATTTAA--CTTT-AT-TT
1 TTAATAATAATTACTTTAATGATTTAATGATTTAATGATTTAATGAT
*
3322 TTAATAATAATTAC--------TTTAATGATTTAA--CTTTAATGAT
1 TTAATAATAATTACTTTAATGATTTAATGATTTAATGATTTAATGAT
3359 TTAATAATAATTACTTT-ATGATTTAATGATTTAATGATTTAAT-AT
1 TTAATAATAATTACTTTAATGATTTAATGATTTAATGATTTAATGAT
* * * *
3404 AATTACT-TTAATGA-TTTAATGATTTAATAATTTAATGATTTAATGAT
1 --TTAATAATAATTACTTTAATGATTTAATGATTTAATGATTTAATGAT
*
3451 TTAATAATAATTAC--------TTTAATGATTTAA--CTTTAATGAT
1 TTAATAATAATTACTTTAATGATTTAATGATTTAATGATTTAATGAT
3488 TTAATAATAATTACTTTAATGATTTAATGATTTAATGATTTAATGAT
1 TTAATAATAATTACTTTAATGATTTAATGATTTAATGATTTAATGAT
*
3535 TTAATAATAATTATTTTAATGATTTAATGATTTAATGATTTAATGAT
1 TTAATAATAATTACTTTAATGATTTAATGATTTAATGATTTAATGAT
* *
3582 TTAATAATCATTACTTTAATGATTT-A--ATTTAATAATTTAAT-A-
1 TTAATAATAATTACTTTAATGATTTAATGATTTAATGATTTAATGAT
* * *
3624 ATAAT--TACTTAATTTTAATGATTTAAT--TTTAATGATTTAAT
1 TTAATAATAATT-ACTTTAATGATTTAATGATTTAATGATTTAAT
3665 AATAATTACT
Statistics
Matches: 518, Mismatches: 44, Indels: 140
0.74 0.06 0.20
Matches are distributed among these distances:
33 2 0.00
34 9 0.02
35 26 0.05
36 36 0.07
37 47 0.09
38 1 0.00
39 30 0.06
40 11 0.02
41 13 0.03
42 82 0.16
43 24 0.05
44 32 0.06
45 43 0.08
46 47 0.09
47 85 0.16
48 7 0.01
51 23 0.04
ACGTcount: A:0.41, C:0.03, G:0.06, T:0.50
Consensus pattern (47 bp):
TTAATAATAATTACTTTAATGATTTAATGATTTAATGATTTAATGAT
Found at i:3696 original size:14 final size:13
Alignment explanation
Indices: 2998--3706 Score: 275
Period size: 14 Copynumber: 52.9 Consensus size: 13
2988 ATATTAATAA
*
2998 TAATTATTTAAATT
1 TAATGATTT-AATT
*
3012 TAATTATTTAACTT
1 TAATGATTTAA-TT
*
3026 TAATGATTTAATAA
1 TAATGATTTAAT-T
*
3040 TAATTATTTAACTT
1 TAATGATTTAA-TT
*
3054 TAATGATTTAATAA
1 TAATGATTTAAT-T
*
3068 TAATTATTTAACTT
1 TAATGATTTAA-TT
3082 TAATGATTTAA--
1 TAATGATTTAATT
* *
3093 TAAT-AATTACTT
1 TAATGATTTAATT
3105 TAATGATTTAACTT
1 TAATGATTTAA-TT
3119 TAATGATTTAA--
1 TAATGATTTAATT
*
3130 TAATAATTTAATTT
1 TAATGATTTAA-TT
3144 TAATGATTTAA--
1 TAATGATTTAATT
* *
3155 TAAT-AATTACTT
1 TAATGATTTAATT
3167 TAATGATTTAATTT
1 TAATGATTTAA-TT
3181 TAATG-----ATT
1 TAATGATTTAATT
3189 TAATGATTTAACTT
1 TAATGATTTAA-TT
3203 TAATGGATTTAA--
1 TAAT-GATTTAATT
*
3215 T-A--A-TTACTT
1 TAATGATTTAATT
3224 TAATGA-TTAATTT
1 TAATGATTTAA-TT
3237 TAATGATTTAA--
1 TAATGATTTAATT
* *
3248 TAAT-AATTACTT
1 TAATGATTTAATT
3260 TAATGATTTAACTT
1 TAATGATTTAA-TT
*
3274 TAATGA-TTAATAA
1 TAATGATTTAAT-T
**
3287 TAATTCTTTAATGATT
1 TAATGATTT-A--ATT
3303 TAATGATTTAACTT
1 TAATGATTTAA-TT
*
3317 T-AT-TTTTAA--
1 TAATGATTTAATT
* *
3326 TAAT-AATTACTT
1 TAATGATTTAATT
3338 TAATGATTTAACTT
1 TAATGATTTAA-TT
*
3352 TAATGATTTAATAA
1 TAATGATTTAAT-T
*
3366 TAATTACTTTATGATT
1 TAATGA-TTTA--ATT
3382 TAATGATTTAATGATT
1 TAATGATTT-A--ATT
*
3398 TAAT-ATAATTACTT
1 TAATGAT--TTAATT
3412 TAATGATTTAATGATT
1 TAATGATTT-A--ATT
*
3428 TAATAATTTAATGATT
1 TAATGATTT-A--ATT
3444 TAATGATTTAA--
1 TAATGATTTAATT
* *
3455 TAAT-AATTACTT
1 TAATGATTTAATT
3467 TAATGATTTAACTT
1 TAATGATTTAA-TT
*
3481 TAATGATTTAATAA
1 TAATGATTTAAT-T
*
3495 TAATTACTTTAATGATT
1 TAATGA-TTT-A--ATT
3512 TAATGATTTAATGATT
1 TAATGATTT-A--ATT
3528 TAATGATTTAA--
1 TAATGATTTAATT
* *
3539 TAAT-AATTATTT
1 TAATGATTTAATT
3551 TAATGATTTAATGATT
1 TAATGATTT-A--ATT
3567 TAATGATTTAATGATT
1 TAATGATTT-A--ATT
* *
3583 TAATAATCATTACTT
1 TAATGAT--TTAATT
3598 TAATGATTTAATT
1 TAATGATTTAATT
* *
3611 TAATAATTTAATAA
1 TAATGATTTAAT-T
* *
3625 TAATTACTTAATTT
1 TAATGATTTAA-TT
3639 TAATGATTTAATTT
1 TAATGATTTAA-TT
*
3653 TAATGATTTAATAA
1 TAATGATTTAAT-T
* * *
3667 TAATTACTTGACTT
1 TAATGA-TTTAATT
3681 TAATGATTTATATT
1 TAATGATTTA-ATT
* *
3695 TACTGATATAAT
1 TAATGATTTAAT
3707 AATAGTAAAT
Statistics
Matches: 539, Mismatches: 78, Indels: 157
0.70 0.10 0.20
Matches are distributed among these distances:
7 3 0.01
8 8 0.01
9 3 0.01
10 26 0.05
11 31 0.06
12 35 0.06
13 75 0.14
14 210 0.39
15 40 0.07
16 92 0.17
17 12 0.02
18 4 0.01
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.50
Consensus pattern (13 bp):
TAATGATTTAATT
Found at i:6217 original size:168 final size:170
Alignment explanation
Indices: 5892--6243 Score: 509
Period size: 168 Copynumber: 2.1 Consensus size: 170
5882 ACATCAATAT
* *
5892 AAAATGATCCCTAATTACTATTTGCTTCTCAACATTTTCAAACTTTGCAATTTAATCACTAAATT
1 AAAACGATCCCTAATTACTATTTGCTTCTCAACATTTTCAAACTTAGCAATTTAATCACTAAATT
*
5957 TATAAATTCTTTCAAATTTAACCAATTAAGCATATTAATACTAAATTCAAGCAGTATACCAACTT
66 TATAAATTCTTTCAAATTTAACCAATTAAGCATACTAATACTAAATTCAAGCAGTATACCAACTT
* * *
6022 TTTATAATTTACTCTAATTTCTTAAATT-CTTCAAATTTGC
131 TTAATAATTTACTCTAATTCCTTAAATTCCTT-AAATTTAC
* *
6062 AAAACGATCCCTAATTACTATTTGGTTCTCAACA-TTTCAAAGTTAGCAATTTAATC-CATAAAT
1 AAAACGATCCCTAATTACTATTTGCTTCTCAACATTTTCAAACTTAGCAATTTAATCAC-TAAAT
* * *
6125 TT-TAAATTCTTTCTAATTTAACCAATTAAGCATACTAATACTAAATTCCAGCATAGTATAGCAA
65 TTATAAATTCTTTCAAATTTAACCAATTAAGCATACTAATACTAAATTCAAGC--AGTATACCAA
*
6189 CTTTTAATAATTTACTCT-A-TCCTTAAATTCCTTAATTTTAC
128 CTTTTAATAATTTACTCTAATTCCTTAAATTCCTTAAATTTAC
*
6230 AAAACGGTCCCTAA
1 AAAACGATCCCTAA
6244 AACTTTACAA
Statistics
Matches: 165, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
168 76 0.46
169 31 0.19
170 58 0.35
ACGTcount: A:0.37, C:0.18, G:0.05, T:0.39
Consensus pattern (170 bp):
AAAACGATCCCTAATTACTATTTGCTTCTCAACATTTTCAAACTTAGCAATTTAATCACTAAATT
TATAAATTCTTTCAAATTTAACCAATTAAGCATACTAATACTAAATTCAAGCAGTATACCAACTT
TTAATAATTTACTCTAATTCCTTAAATTCCTTAAATTTAC
Found at i:6802 original size:21 final size:21
Alignment explanation
Indices: 6747--6802 Score: 78
Period size: 21 Copynumber: 2.6 Consensus size: 21
6737 AGGACCCAGG
6747 ACCCGTGATTTCTCCTTGCAGA
1 ACCCGTGA-TTCTCCTTGCAGA
*
6769 A-CCGTGCTCTCTCCTTGCAGA
1 ACCCGTGAT-TCTCCTTGCAGA
6790 ACCCGTGATTCTC
1 ACCCGTGATTCTC
6803 ACGTCCGTCC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
20 1 0.03
21 22 0.73
22 7 0.23
ACGTcount: A:0.16, C:0.36, G:0.18, T:0.30
Consensus pattern (21 bp):
ACCCGTGATTCTCCTTGCAGA
Found at i:10496 original size:17 final size:17
Alignment explanation
Indices: 10471--10503 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
10461 GAAACCTTAG
*
10471 CTTTTCAACAAAAATAT
1 CTTTACAACAAAAATAT
10488 CTTTACAACAAAAATA
1 CTTTACAACAAAAATA
10504 CGCTACTCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.18, G:0.00, T:0.30
Consensus pattern (17 bp):
CTTTACAACAAAAATAT
Found at i:11239 original size:59 final size:59
Alignment explanation
Indices: 11147--11264 Score: 236
Period size: 59 Copynumber: 2.0 Consensus size: 59
11137 TAATGGACTG
11147 ATTAATTAATATGTTTGATTTGATCCATTAAATACTTTTATGGAAATGTAATAATAATT
1 ATTAATTAATATGTTTGATTTGATCCATTAAATACTTTTATGGAAATGTAATAATAATT
11206 ATTAATTAATATGTTTGATTTGATCCATTAAATACTTTTATGGAAATGTAATAATAATT
1 ATTAATTAATATGTTTGATTTGATCCATTAAATACTTTTATGGAAATGTAATAATAATT
11265 TATAAAATAT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.39, C:0.05, G:0.10, T:0.46
Consensus pattern (59 bp):
ATTAATTAATATGTTTGATTTGATCCATTAAATACTTTTATGGAAATGTAATAATAATT
Found at i:11355 original size:12 final size:13
Alignment explanation
Indices: 11330--11354 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11320 TTGTAATAAT
11330 TATGATTAAAAAA
1 TATGATTAAAAAA
11343 TATGATTAAAAA
1 TATGATTAAAAA
11355 TTCAATAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (13 bp):
TATGATTAAAAAA
Found at i:16843 original size:2 final size:2
Alignment explanation
Indices: 16836--16870 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
16826 GTACATTAAG
16836 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
16871 AATAAGAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:41850 original size:4 final size:4
Alignment explanation
Indices: 41841--41866 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
41831 AATATGCAAG
41841 TCCA TCCA TCCA TCCA TCCA TCCA TC
1 TCCA TCCA TCCA TCCA TCCA TCCA TC
41867 TATCTATCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.50, G:0.00, T:0.27
Consensus pattern (4 bp):
TCCA
Found at i:44890 original size:20 final size:21
Alignment explanation
Indices: 44852--44890 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
44842 ATATAAATTA
44852 TGGAATATATATATTTGAACG
1 TGGAATATATATATTTGAACG
*
44873 TGGAATATA-ATTTTTGAA
1 TGGAATATATATATTTGAA
44891 TACACAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.38, C:0.03, G:0.18, T:0.41
Consensus pattern (21 bp):
TGGAATATATATATTTGAACG
Found at i:62953 original size:16 final size:15
Alignment explanation
Indices: 62921--62975 Score: 57
Period size: 14 Copynumber: 3.9 Consensus size: 15
62911 ATTGAACTAG
*
62921 AATATAAAAATTAAT
1 AATATAAATATTAAT
62936 -ATAT-AAT-TTACAT
1 AATATAAATATTA-AT
62949 AATATAAATATTAAT
1 AATATAAATATTAAT
62964 AATA-AAA-ATTAA
1 AATATAAATATTAA
62976 CATATCTTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
12 3 0.09
13 9 0.26
14 11 0.31
15 9 0.26
16 3 0.09
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (15 bp):
AATATAAATATTAAT
Found at i:63673 original size:2 final size:2
Alignment explanation
Indices: 63666--63700 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
63656 TTTTATATGA
*
63666 AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
63701 AATTAAATCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:63798 original size:17 final size:18
Alignment explanation
Indices: 63763--63798 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
63753 TTGATAAATC
63763 ATTTTATAAATATATTTA
1 ATTTTATAAATATATTTA
*
63781 ATTTTTTAAATA-ATTTA
1 ATTTTATAAATATATTTA
63798 A
1 A
63799 GGTGATTACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
ATTTTATAAATATATTTA
Found at i:69826 original size:23 final size:23
Alignment explanation
Indices: 69800--69846 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
69790 TTAATCTTTG
* * *
69800 TGAATATGTTAGTTTAACATTTA
1 TGAACATGTGAGTTCAACATTTA
*
69823 TGAACATGTGCGTTCAACATTTA
1 TGAACATGTGAGTTCAACATTTA
69846 T
1 T
69847 TTGCAAATAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.32, C:0.11, G:0.15, T:0.43
Consensus pattern (23 bp):
TGAACATGTGAGTTCAACATTTA
Found at i:70904 original size:3 final size:3
Alignment explanation
Indices: 70892--70929 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
70882 CCAAATTCGC
70892 TCT T-T TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
70930 GCAATGAATT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 32 0.94
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:78572 original size:15 final size:15
Alignment explanation
Indices: 78543--78665 Score: 178
Period size: 15 Copynumber: 8.3 Consensus size: 15
78533 AAATAATTTT
78543 AAATAATTTA--ATA
1 AAATAATTTATTATA
* * *
78556 AAGTTATTTATTTTA
1 AAATAATTTATTATA
*
78571 AAATAATTTATTCTA
1 AAATAATTTATTATA
78586 AAATAATTTATTATA
1 AAATAATTTATTATA
78601 AAATAATTTATTATA
1 AAATAATTTATTATA
78616 AAATAATTTATTATA
1 AAATAATTTATTATA
*
78631 AAATAATTTATTTTA
1 AAATAATTTATTATA
*
78646 AAATAAATTATTATA
1 AAATAATTTATTATA
78661 AAATA
1 AAATA
78666 TGGATTGATT
Statistics
Matches: 98, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
13 8 0.08
15 90 0.92
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (15 bp):
AAATAATTTATTATA
Found at i:78610 original size:45 final size:45
Alignment explanation
Indices: 78543--78709 Score: 178
Period size: 45 Copynumber: 3.6 Consensus size: 45
78533 AAATAATTTT
* * * *
78543 AAATAATTTA--ATAAAGTTATTTATTTTAAAATAATTTATTCTA
1 AAATAATTTATTATAAAATAATTTATTATAAAATAATTTATTATA
78586 AAATAATTTATTATAAAATAATTTATTATAAAATAATTTATTATA
1 AAATAATTTATTATAAAATAATTTATTATAAAATAATTTATTATA
* * *
78631 AAATAATTTATTTTAAAATAAATTATTATAAAATATGGATTGATTTATTTTA
1 AAATAATTTATTATAAAATAATTTATTAT-AAA-AT--A---ATTTATTATA
*
78683 AAATAATTTATT-TTAAATAATTTATTA
1 AAATAATTTATTATAAAATAATTTATTA
78710 GTATGGATTG
Statistics
Matches: 106, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
43 10 0.09
45 56 0.53
46 3 0.03
47 2 0.02
49 1 0.01
51 13 0.12
52 21 0.20
ACGTcount: A:0.49, C:0.01, G:0.02, T:0.49
Consensus pattern (45 bp):
AAATAATTTATTATAAAATAATTTATTATAAAATAATTTATTATA
Found at i:78678 original size:22 final size:22
Alignment explanation
Indices: 78653--78753 Score: 94
Period size: 22 Copynumber: 4.5 Consensus size: 22
78643 TTAAAATAAA
*
78653 TTATTATAAAATATGGATTGAT
1 TTATTTTAAAATATGGATTGAT
** * *
78675 TTATTTTAAAATAATTTATTTTAA
1 TTATTTTAAAAT-ATGGA-TTGAT
* * * *
78699 ATAATTTATTAGTATGGATTGAT
1 TTATTTTA-AAATATGGATTGAT
78722 TTATTTTAAAATATGGATTGAT
1 TTATTTTAAAATATGGATTGAT
78744 TTATTTTAAA
1 TTATTTTAAA
78754 TAATTTATTA
Statistics
Matches: 59, Mismatches: 17, Indels: 6
0.72 0.21 0.07
Matches are distributed among these distances:
22 33 0.56
23 12 0.20
24 12 0.20
25 2 0.03
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.51
Consensus pattern (22 bp):
TTATTTTAAAATATGGATTGAT
Found at i:78693 original size:15 final size:14
Alignment explanation
Indices: 78673--78708 Score: 63
Period size: 14 Copynumber: 2.5 Consensus size: 14
78663 ATATGGATTG
78673 ATTTATTTTAAAATA
1 ATTTATTTT-AAATA
78688 ATTTATTTTAAATA
1 ATTTATTTTAAATA
78702 ATTTATT
1 ATTTATT
78709 AGTATGGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
ATTTATTTTAAATA
Found at i:78702 original size:14 final size:15
Alignment explanation
Indices: 78561--78708 Score: 172
Period size: 15 Copynumber: 9.5 Consensus size: 15
78551 TAATAAAGTT
78561 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
78576 ATTTATTCTAAAATA
1 ATTTATTTTAAAATA
*
78591 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
*
78606 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
*
78621 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
78636 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
* *
78651 AATTATTATAAAATATGGA
1 ATTTATT-TTAAA-AT--A
78670 TTGATTTATTTTAAAATA
1 ---ATTTATTTTAAAATA
78688 ATTTATTTT-AAATA
1 ATTTATTTTAAAATA
78702 ATTTATT
1 ATTTATT
78709 AGTATGGATT
Statistics
Matches: 119, Mismatches: 7, Indels: 15
0.84 0.05 0.11
Matches are distributed among these distances:
14 12 0.10
15 87 0.73
16 4 0.03
17 2 0.02
18 1 0.01
19 1 0.01
20 2 0.02
21 4 0.03
22 6 0.05
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.50
Consensus pattern (15 bp):
ATTTATTTTAAAATA
Found at i:78726 original size:32 final size:32
Alignment explanation
Indices: 78688--78839 Score: 155
Period size: 32 Copynumber: 5.4 Consensus size: 32
78678 TTTTAAAATA
78688 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
78720 ATTTA-TTT---TAA---A--A-TATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
78742 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
78774 ATTTATTTT--A-AA---A-TA-TA--GATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
*
78796 ATTTATTTTAAATAATTTATTTGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
78828 ATTTATTTTAAA
1 ATTTATTTTAAA
78840 ATATGGATTG
Statistics
Matches: 99, Mismatches: 1, Indels: 40
0.71 0.01 0.29
Matches are distributed among these distances:
22 28 0.28
23 4 0.04
24 3 0.03
25 5 0.05
26 4 0.04
28 4 0.04
29 4 0.04
30 3 0.03
31 4 0.04
32 40 0.40
ACGTcount: A:0.36, C:0.00, G:0.11, T:0.53
Consensus pattern (32 bp):
ATTTATTTTAAATAATTTATTAGTATGGATTG
Found at i:78743 original size:69 final size:67
Alignment explanation
Indices: 78606--78763 Score: 203
Period size: 69 Copynumber: 2.3 Consensus size: 67
78596 TTATAAAATA
*
78606 ATTTATTATAAAATAATTTATTATAAAATAATTTATTTTAAAATAAATTATTATAAAATATGGAT
1 ATTTATTTTAAAATAATTTATTATAAAATAATTTATTTTAAAATAAATTATTATAAAATATGGAT
78671 TG
66 TG
* ** * * * *
78673 ATTTATTTTAAAATAATTTATT-TTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATG
1 ATTTATTTTAAAATAATTTATTATAAAATAATTTATT--T-TAAAATAAATTATTATAAAATATG
78737 GATTG
63 GATTG
78742 ATTTATTTT-AAATAATTTATTA
1 ATTTATTTTAAAATAATTTATTA
78764 GTATGGATTG
Statistics
Matches: 79, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
66 13 0.16
67 21 0.27
68 13 0.16
69 32 0.41
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (67 bp):
ATTTATTTTAAAATAATTTATTATAAAATAATTTATTTTAAAATAAATTATTATAAAATATGGAT
TG
Found at i:78753 original size:54 final size:54
Alignment explanation
Indices: 78688--78856 Score: 320
Period size: 54 Copynumber: 3.1 Consensus size: 54
78678 TTTTAAAATA
78688 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
*
78742 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATAGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
*
78796 ATTTATTTTAAATAATTTATTTGTATGGATTGATTTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
78850 ATTTATT
1 ATTTATT
78857 ATTGTAGTTT
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
54 112 1.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (54 bp):
ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
Found at i:78891 original size:80 final size:80
Alignment explanation
Indices: 78791--79106 Score: 479
Period size: 80 Copynumber: 3.8 Consensus size: 80
78781 TTAAAATATA
*
78791 GATTGATTTATTTTAAATAATTTATTTGTATGGATTGATTTATTTTAAAATATGGATTGATTTAT
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTAT
*
78856 TATTGTAGTTTTATG
66 TATTGTAGTTGTATG
* **
78871 GATTGATTTATTTTAAATAATTTATTTGTATGGATTGATTTATTTTAAAATATAAATTGATTTAT
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTAT
*
78936 TATTGTAGTTGTATA
66 TATTGTAGTTGTATG
*
78951 GATTGATTTATTTTAAATAATTTATTAGTATGTATTGATTTATTTTAAATAATTTATTTGTATGG
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT--A-AA---A----TATGG
79016 ATTGATTTATTATTGTAGTTGTATG
56 ATTGATTTATTATTGTAGTTGTATG
79041 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTAT
1 GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTAT
79106 T
66 T
79107 TTAAAATATG
Statistics
Matches: 216, Mismatches: 10, Indels: 20
0.88 0.04 0.08
Matches are distributed among these distances:
80 136 0.63
82 1 0.00
83 2 0.01
84 1 0.00
86 1 0.00
87 2 0.01
88 1 0.00
90 72 0.33
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.54
Consensus pattern (80 bp):
GATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTAT
TATTGTAGTTGTATG
Found at i:78910 original size:58 final size:57
Alignment explanation
Indices: 78841--79111 Score: 242
Period size: 58 Copynumber: 4.8 Consensus size: 57
78831 TATTTTAAAA
*
78841 TATGGATTGATTTATTATTGTAGTTTTATGGATTGATTTATTTTAAATAATTTATTTG
1 TATGGATTGATTTATTATTGTA-TTGTATGGATTGATTTATTTTAAATAATTTATTTG
*** ** * *
78899 TATGGATTGATTTA-T-TT-TAAAATATAAATTGATTTA--TT--AT--TGTAGTTG
1 TATGGATTGATTTATTATTGTATTGTATGGATTGATTTATTTTAAATAATTTATTTG
* * *
78947 TATAGATTGATTTATTTTAAATAATTTATTAGTATGTATTGATTTATTTTAAATAATTTATTTG
1 TATGGATTGATTTA--TT--AT--TGTATT-GTATGGATTGATTTATTTTAAATAATTTATTTG
*
79011 TATGGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAG
1 TATGGATTGATTTATTATTGTA-TTGTATGGATTGATTTATTTTAAATAATTTATTTG
***
79069 TATGGATTGATTTA-T-TT-TAAAATATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTATTGTATTGTATGGATTGATTTATTTTAAA
79112 ATATGGATTG
Statistics
Matches: 174, Mismatches: 22, Indels: 38
0.74 0.09 0.16
Matches are distributed among these distances:
48 19 0.11
50 2 0.01
51 1 0.01
52 2 0.01
54 34 0.20
55 4 0.02
56 5 0.03
57 4 0.02
58 74 0.43
59 2 0.01
60 4 0.02
62 4 0.02
64 19 0.11
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.54
Consensus pattern (57 bp):
TATGGATTGATTTATTATTGTATTGTATGGATTGATTTATTTTAAATAATTTATTTG
Found at i:78990 original size:32 final size:32
Alignment explanation
Indices: 78946--79089 Score: 194
Period size: 32 Copynumber: 4.7 Consensus size: 32
78936 TATTGTAGTT
*
78946 GTATAGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
* *
78978 GTATGTATTGATTTATTTTAAATAATTTATTT
1 GTATGGATTGATTTATTTTAAATAATTTATTA
*
79010 GTATGGATTGATTTA--TT--AT--TGTAGTT-
1 GTATGGATTGATTTATTTTAAATAATTTA-TTA
79036 GTATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
79068 GTATGGATTGATTTATTTTAAA
1 GTATGGATTGATTTATTTTAAA
79090 ATATGGATTG
Statistics
Matches: 98, Mismatches: 6, Indels: 16
0.82 0.05 0.13
Matches are distributed among these distances:
26 18 0.18
27 2 0.02
28 4 0.04
30 4 0.04
31 2 0.02
32 68 0.69
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.54
Consensus pattern (32 bp):
GTATGGATTGATTTATTTTAAATAATTTATTA
Found at i:79023 original size:192 final size:197
Alignment explanation
Indices: 78688--79191 Score: 594
Period size: 192 Copynumber: 2.6 Consensus size: 197
78678 TTTTAAAATA
78688 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTTTAA
1 ATTTATTTTAAATAATTTATT-GTATGGATTGATTTATTTTAAAATATGGATTGATTTA--TT--
* *
78753 ATAATTTA-TTAGTATGGATTGATTTATTTT--A-AA---A-TA-TA-GATTGATTTATTTTAAA
61 AT--TGTAGTT-GTATAGATTGATTTATTTTAAATAATTTATTAGTATGATTGATTTATTTTAAA
78808 TAATTTATTTGTATGGATTGATTTA-T-TT-TA-AAATATGGATTGATTTA-TT-AT-TGTAGTT
123 TAATTTATTTGTATGGATTGATTTATTATTGTAGAAATATGGATTGATTTATTTAATATGTA-TT
*
78866 -TTATGGATTG
187 AGTATGGATTG
**
78876 ATTTATTTTAAATAATTTATTTGTATGGATTGATTTATTTTAAAATATAAATTGATTTATTATTG
1 ATTTATTTTAAATAATTTA-TTGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTG
78941 TAGTTGTATAGATTGATTTATTTTAAATAATTTATTAGTATGTATTGATTTATTTTAAATAATTT
65 TAGTTGTATAGATTGATTTATTTTAAATAATTTATTAGTATG-ATTGATTTATTTTAAATAATTT
*** *
79006 ATTTGTATGGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTA
129 ATTTGTATGGATTGATTTATTATTGTAGAAATATGGATTGATTTA-TTT-AAT-ATGTATTAGTA
79071 TGGATTG
191 TGGATTG
79078 ATTTATTTT--A-AA---A---TATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGT
1 ATTTATTTTAAATAATTTATTGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGT
*
79134 AGTTGTATAAATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAA
66 AGTTGTATAGATTGATTTATTTTAAATAATTTATTAGTAT-GATTGATTTATTTTAAA
79192 ATATAGATTG
Statistics
Matches: 280, Mismatches: 12, Indels: 44
0.83 0.04 0.13
Matches are distributed among these distances:
182 21 0.08
183 2 0.01
184 3 0.01
185 2 0.01
186 2 0.01
188 55 0.20
189 4 0.01
190 2 0.01
191 1 0.00
192 137 0.49
193 2 0.01
194 2 0.01
195 2 0.01
196 15 0.05
198 2 0.01
199 2 0.01
200 3 0.01
201 2 0.01
202 21 0.08
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.54
Consensus pattern (197 bp):
ATTTATTTTAAATAATTTATTGTATGGATTGATTTATTTTAAAATATGGATTGATTTATTATTGT
AGTTGTATAGATTGATTTATTTTAAATAATTTATTAGTATGATTGATTTATTTTAAATAATTTAT
TTGTATGGATTGATTTATTATTGTAGAAATATGGATTGATTTATTTAATATGTATTAGTATGGAT
TG
Found at i:79094 original size:22 final size:22
Alignment explanation
Indices: 79069--79128 Score: 120
Period size: 22 Copynumber: 2.7 Consensus size: 22
79059 AATTTATTAG
79069 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
79091 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
79113 TATGGATTGATTTATT
1 TATGGATTGATTTATT
79129 ATTGTAGTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:79134 original size:102 final size:102
Alignment explanation
Indices: 79011--79213 Score: 379
Period size: 102 Copynumber: 2.0 Consensus size: 102
79001 AATTTATTTG
**
79011 TATGGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGAT
1 TATGGATTGATTTATTATTGTAGTTGTATAAATTGATTTATTTTAAATAATTTATTAGTATGGAT
*
79076 TGATTTATTTTAAAATATGGATTGATTTATTTTAAAA
66 TGATTTATTTTAAAATATAGATTGATTTATTTTAAAA
79113 TATGGATTGATTTATTATTGTAGTTGTATAAATTGATTTATTTTAAATAATTTATTAGTATGGAT
1 TATGGATTGATTTATTATTGTAGTTGTATAAATTGATTTATTTTAAATAATTTATTAGTATGGAT
79178 TGATTTATTTTAAAATATAGATTGATTTATTTTAAA
66 TGATTTATTTTAAAATATAGATTGATTTATTTTAAA
79214 TAATTTATTA
Statistics
Matches: 98, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
102 98 1.00
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.52
Consensus pattern (102 bp):
TATGGATTGATTTATTATTGTAGTTGTATAAATTGATTTATTTTAAATAATTTATTAGTATGGAT
TGATTTATTTTAAAATATAGATTGATTTATTTTAAAA
Found at i:79273 original size:30 final size:30
Alignment explanation
Indices: 79237--79293 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
79227 TAGTTGTATG
* *
79237 AATTATTTAAATTTCAGTATTGTAAAATAA
1 AATTATTTAAATCTCAGTATTGCAAAATAA
79267 AATTATTTAAATCTCAGTATTGCAAAA
1 AATTATTTAAATCTCAGTATTGCAAAA
79294 CTCTTTTAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.40
Consensus pattern (30 bp):
AATTATTTAAATCTCAGTATTGCAAAATAA
Found at i:79946 original size:47 final size:47
Alignment explanation
Indices: 79870--79964 Score: 172
Period size: 47 Copynumber: 2.0 Consensus size: 47
79860 AGCGGTGTGT
*
79870 GGGGCATTGTTGGCTGGTTCCAGAGATGACGAGGTAGAAAGGTTGAG
1 GGGGCATTGTTGGCTGGTTCCAAAGATGACGAGGTAGAAAGGTTGAG
*
79917 GGGGCATTGTTGGCTGGTTCCAAATATGACGAGGTAGAAAGGTTGAG
1 GGGGCATTGTTGGCTGGTTCCAAAGATGACGAGGTAGAAAGGTTGAG
79964 G
1 G
79965 AGATACGGTC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.24, C:0.11, G:0.41, T:0.24
Consensus pattern (47 bp):
GGGGCATTGTTGGCTGGTTCCAAAGATGACGAGGTAGAAAGGTTGAG
Found at i:82477 original size:3 final size:3
Alignment explanation
Indices: 82469--82495 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
82459 TCGTAAATCC
82469 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
82496 TTGAGTAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:86186 original size:17 final size:17
Alignment explanation
Indices: 86164--86198 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
86154 AGTCGACAAT
86164 TCTTAACCTATTAATAA
1 TCTTAACCTATTAATAA
86181 TCTTAACCTATTAATAA
1 TCTTAACCTATTAATAA
86198 T
1 T
86199 GCACACTCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.43
Consensus pattern (17 bp):
TCTTAACCTATTAATAA
Found at i:86424 original size:21 final size:21
Alignment explanation
Indices: 86387--86430 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
86377 AGCATTCGAC
* *
86387 ATAAAAAAATAGGTAAAGTAT
1 ATAAAAAAATAGCTAAAATAT
86408 ATAAAAAAATTA-CTAAAATAT
1 ATAAAAAAA-TAGCTAAAATAT
86429 AT
1 AT
86431 TTAAATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 18 0.90
22 2 0.10
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.27
Consensus pattern (21 bp):
ATAAAAAAATAGCTAAAATAT
Found at i:92404 original size:2 final size:2
Alignment explanation
Indices: 92399--92441 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
92389 TCTCTGTCCG
92399 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
92441 T
1 T
92442 TTCTGTGTGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:96616 original size:20 final size:20
Alignment explanation
Indices: 96593--96644 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
96583 AACGCGATCC
96593 CCAGAATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTT
96613 CCAGAATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTT
*
96633 CCAAAATCGCAA
1 CCAGAATCGCAA
96645 CGCGATTCTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.38, C:0.27, G:0.13, T:0.21
Consensus pattern (20 bp):
CCAGAATCGCAAATCAGTTT
Found at i:96725 original size:20 final size:20
Alignment explanation
Indices: 96700--96893 Score: 76
Period size: 20 Copynumber: 9.7 Consensus size: 20
96690 GATTTTCCAT
* *
96700 AATCGCAACGCGAATATGA-A
1 AATCGCAACGCGAACA-CATA
96720 AATCGCAACGCGAACACATA
1 AATCGCAACGCGAACACATA
* *
96740 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
96760 AATCGCAACGTGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* ****
96780 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGAACACATA
* * *
96800 AATCGCAATGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
96820 TATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
** *
96840 AATCGCAACGATAATACATAA
1 AATCGCAACGCGAACACAT-A
* *
96861 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
96881 AATCGCAACGCGA
1 AATCGCAACGCGA
96894 TATTTAAAGC
Statistics
Matches: 139, Mismatches: 28, Indels: 15
0.76 0.15 0.08
Matches are distributed among these distances:
19 3 0.02
20 120 0.86
21 15 0.11
22 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.19
Consensus pattern (20 bp):
AATCGCAACGCGAACACATA
Found at i:96745 original size:40 final size:39
Alignment explanation
Indices: 96696--96893 Score: 200
Period size: 40 Copynumber: 5.0 Consensus size: 39
96686 TTGCGATTTT
* ** *
96696 CCAT-AATCGCAACGCGAATATGAAAATCGCAACGCGAA
1 CCATAAATCGCAACGCGTATCCGTAAATCGCAACGCGAA
* *
96734 CACATAAATCGCAACGCGTATCCGTAAATCGCAACGTGTAT
1 C-CATAAATCGCAACGCGTATCCGTAAATCGCAACGCG-AA
* ** * *
96775 CCGTAAATCGCAACGCGTATGGGTAAATCGCAATGCGTAT
1 CCATAAATCGCAACGCGTATCCGTAAATCGCAACGCG-AA
* * **
96815 CCGTATATCGCAACGCGTATCCGTAAATCGCAACGATAA
1 CCATAAATCGCAACGCGTATCCGTAAATCGCAACGCGAA
*
96854 TACATAAAATCGCAACGCGTATCCGTAAATCGCAACGCGA
1 -CCAT-AAATCGCAACGCGTATCCGTAAATCGCAACGCGA
96894 TATTTAAAGC
Statistics
Matches: 132, Mismatches: 23, Indels: 7
0.81 0.14 0.04
Matches are distributed among these distances:
38 1 0.01
39 4 0.03
40 94 0.71
41 33 0.25
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.19
Consensus pattern (39 bp):
CCATAAATCGCAACGCGTATCCGTAAATCGCAACGCGAA
Found at i:96783 original size:60 final size:60
Alignment explanation
Indices: 96700--96892 Score: 251
Period size: 60 Copynumber: 3.2 Consensus size: 60
96690 GATTTTCCAT
* ** * *
96700 AATCGCAACGCGAATATGAAAATCGCAACGCGAACACATAAATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTA
* * *** *
96760 AATCGCAACGTGTATCCGTAAATCGCAACGCGTATGGGTAAATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTA
* **
96820 TATCGCAACGCGTATCCGTAAATCGCAACGATAATACATAAAATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACAT-AAATCGCAACGCGTATCCGTA
96881 AATCGCAACGCG
1 AATCGCAACGCG
96893 ATATTTAAAG
Statistics
Matches: 111, Mismatches: 21, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
60 80 0.72
61 31 0.28
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.19
Consensus pattern (60 bp):
AATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGTA
Found at i:97313 original size:33 final size:33
Alignment explanation
Indices: 97274--97344 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
97264 TTCACTTAGA
*
97274 TTTCATTTCGCGTTACGATTCTGTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
* *
97307 TTTCATTTCGCGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
97340 TTTCA
1 TTTCA
97345 AGTTAGTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.11, C:0.23, G:0.18, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
Found at i:97466 original size:20 final size:20
Alignment explanation
Indices: 97427--97479 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
97417 AGAAGAGTCG
*
97427 CAACGAGATAAATGAAAATCA
1 CAACGAGA-GAATGAAAATCA
* *
97448 CAACGAGAGAATGACAATCG
1 CAACGAGAGAATGAAAATCA
97468 CAACGAGAGAAT
1 CAACGAGAGAAT
97480 CGCAACGCGA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 21 0.72
21 8 0.28
ACGTcount: A:0.51, C:0.17, G:0.21, T:0.11
Consensus pattern (20 bp):
CAACGAGAGAATGAAAATCA
Found at i:97480 original size:14 final size:14
Alignment explanation
Indices: 97463--97519 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
97453 AGAGAATGAC
97463 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
97477 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
97496 AATCGCAACGAGAG
1 AATCGCAACGAGAG
97510 AATCGCAACG
1 AATCGCAACG
97520 CGAAACCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.28
ACGTcount: A:0.44, C:0.23, G:0.25, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:97494 original size:33 final size:33
Alignment explanation
Indices: 97443--97535 Score: 132
Period size: 33 Copynumber: 2.8 Consensus size: 33
97433 GATAAATGAA
* * *
97443 AATCACAACGAGAGAATGACAATCGCAACGAGAG
1 AATCGCAACGCGA-AATGAAAATCGCAACGAGAG
97477 AATCGCAACGCGAAATGAAAATCGCAACGAGAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAGAG
**
97510 AATCGCAACGCGAAACCAAAATCGCA
1 AATCGCAACGCGAAATGAAAATCGCA
97536 TTGCGATTTT
Statistics
Matches: 54, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
33 43 0.80
34 11 0.20
ACGTcount: A:0.46, C:0.24, G:0.22, T:0.09
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAGAG
Found at i:97553 original size:19 final size:19
Alignment explanation
Indices: 97531--97628 Score: 81
Period size: 19 Copynumber: 5.7 Consensus size: 19
97521 GAAACCAAAA
*
97531 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
97550 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
97564 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
97583 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* * *
97597 TCTCGTTGCGATTGTCATC
1 TCGCGTTGCGATTTTCATT
97616 TCGCGTTGCGATT
1 TCGCGTTGCGATT
97629 CTCTCGTTGC
Statistics
Matches: 63, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
14 20 0.32
16 5 0.08
17 6 0.10
19 32 0.51
ACGTcount: A:0.10, C:0.24, G:0.22, T:0.43
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:97572 original size:14 final size:14
Alignment explanation
Indices: 97553--97642 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
97543 TTTCATTTCG
97553 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
97567 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
97586 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
97600 CGTTGCGATTGTCATCT
1 CGTTGCGA-T-TC-TCT
97617 CGCGTTGCGATTCTCT
1 --CGTTGCGATTCTCT
97633 CGTTGCGATT
1 CGTTGCGATT
97643 TTCATTTCAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.09, C:0.26, G:0.23, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:97578 original size:33 final size:33
Alignment explanation
Indices: 97536--97650 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
97526 CAAAATCGCA
97536 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
97569 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
* *
97602 TTGCGATTGTCATCTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
97635 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
97651 AACCAAAAGA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.10, C:0.24, G:0.21, T:0.45
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:99656 original size:185 final size:184
Alignment explanation
Indices: 99344--99814 Score: 915
Period size: 185 Copynumber: 2.6 Consensus size: 184
99334 TAGATTGCTT
*
99344 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
99409 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
99474 GTATATTCTTTAACACTGTGAAATATATTTGTCTTTGTTTTGTCTTTTGGTTGAA
131 GTATATTCTTTAACACTGTGAAATATATTTGTCTTTG-TTTGTCTTTTGGTTGAA
99529 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
99594 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
*
99659 GTGTATTCTTTAACACTGTGAAATATATTTGTCTTTGTTTGTCTTTTGGTTGAA
131 GTATATTCTTTAACACTGTGAAATATATTTGTCTTTGTTTGTCTTTTGGTTGAA
99713 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
99778 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTT
99815 ATCCATTCAA
Statistics
Matches: 284, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
184 119 0.42
185 165 0.58
ACGTcount: A:0.23, C:0.13, G:0.18, T:0.46
Consensus pattern (184 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
GTATATTCTTTAACACTGTGAAATATATTTGTCTTTGTTTGTCTTTTGGTTGAA
Found at i:99658 original size:93 final size:93
Alignment explanation
Indices: 99344--99814 Score: 903
Period size: 93 Copynumber: 5.1 Consensus size: 93
99334 TAGATTGCTT
*
99344 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
99409 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
*
99437 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTATATTCTTTAACACTGTGAAATA-TA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
99501 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
99529 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
99594 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
99622 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATA-TA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
99686 TTTGTCTTTG-TTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
99713 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
99778 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
99806 AGTAAATTT
1 AGTAAATTT
99815 ATCCATTCAA
Statistics
Matches: 372, Mismatches: 3, Indels: 6
0.98 0.01 0.02
Matches are distributed among these distances:
91 79 0.21
92 115 0.31
93 178 0.48
ACGTcount: A:0.23, C:0.13, G:0.18, T:0.46
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:99897 original size:19 final size:19
Alignment explanation
Indices: 99857--99985 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
99847 ATAGTTACTT
* *
99857 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC-CAAAA
99877 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
**
99896 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAACCAAAA
*
99915 TCGCAA--CG--A-CAGAA
1 TCGCAACGCGAAACCAAAA
99929 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
*
99948 TCGCAA--CG--A-CAAGA
1 TCGCAACGCGAAACCAAAA
99962 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
99981 TCGCA
1 TCGCA
99986 TTGCGATTTT
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 19 0.21
15 2 0.02
16 4 0.04
17 4 0.04
18 2 0.02
19 46 0.51
20 13 0.14
ACGTcount: A:0.46, C:0.29, G:0.17, T:0.09
Consensus pattern (19 bp):
TCGCAACGCGAAACCAAAA
Found at i:99936 original size:33 final size:32
Alignment explanation
Indices: 99893--99985 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 32
99883 CGCGAAACCA
**
99893 AAATCGCAACGCGAAATGAAAATCGCAACGAC
1 AAATCGCAACGCGAAACCAAAATCGCAACGAC
99925 AGAATCGCAACGCGAAACCAAAATCGCAACGAC
1 A-AATCGCAACGCGAAACCAAAATCGCAACGAC
99958 AAGATCGCAACGCGAAACCAAAATCGCA
1 AA-ATCGCAACGCGAAACCAAAATCGCA
99986 TTGCGATTTT
Statistics
Matches: 57, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
32 2 0.04
33 55 0.96
ACGTcount: A:0.46, C:0.28, G:0.18, T:0.08
Consensus pattern (32 bp):
AAATCGCAACGCGAAACCAAAATCGCAACGAC
Found at i:99983 original size:52 final size:52
Alignment explanation
Indices: 99857--99985 Score: 140
Period size: 52 Copynumber: 2.5 Consensus size: 52
99847 ATAGTTACTT
**
99857 TCGCAACACGAAACTTAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
1 TCGCAACACGAAACACAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
* * *
99909 T-G-AAAATCGCAACGACAGAATCGCAACGCGAAACCAAAATCGCAACGAC-AAGA
1 TCGCAACA-CGAAAC-ACAAAATCGCAACGCGAAACCAAAATCGCAACG-CGAA-A
*
99962 TCGCAACGCGAAAC-CAAAATCGCA
1 TCGCAACACGAAACACAAAATCGCA
99986 TTGCGATTTT
Statistics
Matches: 62, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
50 3 0.05
51 6 0.10
52 42 0.68
53 3 0.05
54 6 0.10
55 2 0.03
ACGTcount: A:0.46, C:0.29, G:0.17, T:0.09
Consensus pattern (52 bp):
TCGCAACACGAAACACAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
Found at i:100003 original size:19 final size:19
Alignment explanation
Indices: 99981--100115 Score: 128
Period size: 19 Copynumber: 7.6 Consensus size: 19
99971 GAAACCAAAA
*
99981 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
100000 TCGCGTTGCGA--TTC-TT
1 TCGCGTTGCGATTTTCATT
100016 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* *
100033 TCGCATTGCGA--TTC-TG
1 TCGCGTTGCGATTTTCATT
100049 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
100066 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
*
100085 TCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTCA-TT
*
100105 TCGTGTTGCGA
1 TCGCGTTGCGA
100116 AAGTAAACTA
Statistics
Matches: 95, Mismatches: 10, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 15 0.16
16 11 0.12
17 11 0.12
19 46 0.48
20 12 0.13
ACGTcount: A:0.11, C:0.19, G:0.24, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:100022 original size:14 final size:14
Alignment explanation
Indices: 100003--100059 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
99993 TTTCATTTCG
100003 CGTTGCGATTCTTT
1 CGTTGCGATTCTTT
100017 CGTTGCGATTTTCATTT
1 CGTTGCGA--TTC-TTT
*
100034 CGCATTGCGATTCTGT
1 CG--TTGCGATTCTTT
100050 CGTTGCGATT
1 CGTTGCGATT
100060 TTCATTTCGC
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 16 0.43
16 7 0.19
17 8 0.22
19 6 0.16
ACGTcount: A:0.11, C:0.21, G:0.23, T:0.46
Consensus pattern (14 bp):
CGTTGCGATTCTTT
Found at i:100028 original size:33 final size:33
Alignment explanation
Indices: 99986--100078 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
99976 CAAAATCGCA
*
99986 TTGCGATTTTCATTTCGCGTTGCGATTCTTTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
*
100019 TTGCGATTTTCATTTCGCATTGCGATTCTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
100052 TTGCGATTTTCATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCGTTGCGATT
100079 TTGGTTTCGC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.11, C:0.20, G:0.22, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
Found at i:102035 original size:14 final size:14
Alignment explanation
Indices: 102016--102047 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
102006 GTTTAATTGA
102016 TTGTAAAAGATGAT
1 TTGTAAAAGATGAT
*
102030 TTGTAAAAGTTGAT
1 TTGTAAAAGATGAT
102044 TTGT
1 TTGT
102048 GTAATTGATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TTGTAAAAGATGAT
Found at i:102225 original size:20 final size:19
Alignment explanation
Indices: 102142--102239 Score: 136
Period size: 19 Copynumber: 5.4 Consensus size: 19
102132 TATGTTGAAG
102142 GCAATGCGAAATG-AAATC
1 GCAATGCGAAATGAAAATC
102160 GCAATGCGAAATGAAAATC
1 GCAATGCGAAATGAAAATC
*
102179 GCAA--CG--A-GAGAATC
1 GCAATGCGAAATGAAAATC
102193 GCAATGCGAAATGAAAATC
1 GCAATGCGAAATGAAAATC
102212 GCAATGCGGAAATGAAAATC
1 GCAATGC-GAAATGAAAATC
102232 GCAATGCG
1 GCAATGCG
102240 TTTATAATTT
Statistics
Matches: 71, Mismatches: 2, Indels: 13
0.83 0.02 0.15
Matches are distributed among these distances:
14 10 0.14
15 1 0.01
16 2 0.03
17 2 0.03
18 14 0.20
19 23 0.32
20 19 0.27
ACGTcount: A:0.44, C:0.17, G:0.24, T:0.14
Consensus pattern (19 bp):
GCAATGCGAAATGAAAATC
Found at i:102292 original size:19 final size:19
Alignment explanation
Indices: 102268--102541 Score: 363
Period size: 19 Copynumber: 15.4 Consensus size: 19
102258 GATTATCTCG
102268 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
102287 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
102306 TTGCGA--TTC-TTTCG--
1 TTGCGATTTTCATTTCGCA
102320 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
102339 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
102358 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
102377 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
102396 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
102415 TTGCGA--TTC-TGTCG--
1 TTGCGATTTTCATTTCGCA
102429 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
102448 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
102467 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
102481 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
102501 TTGCGATTTTCA--T-G--
1 TTGCGATTTTCATTTCGCA
* *
102515 TTGGGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCGCA
102534 TTGCGATT
1 TTGCGATT
102542 GTATTTTCCG
Statistics
Matches: 228, Mismatches: 6, Indels: 42
0.83 0.02 0.15
Matches are distributed among these distances:
14 29 0.13
16 24 0.11
17 21 0.09
18 3 0.01
19 139 0.61
20 12 0.05
ACGTcount: A:0.14, C:0.21, G:0.18, T:0.47
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:102308 original size:52 final size:52
Alignment explanation
Indices: 102246--102513 Score: 446
Period size: 52 Copynumber: 5.0 Consensus size: 52
102236 TGCGTTTATA
*
102246 ATTTCGCATTGCGATTATCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
*
102298 ATTTCGCATTGCGATTCTTTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
*
102350 ATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGA--TTC-TCTCG--TTGCGATTTTCATTTCGCATTGCGATTTTC
*
102407 ATTTCGCATTGCGATTCTGTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
102459 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTT-CGCATTGCGATTTTC
102512 AT
1 AT
102514 GTTGGGATTT
Statistics
Matches: 206, Mismatches: 4, Indels: 11
0.93 0.02 0.05
Matches are distributed among these distances:
52 130 0.63
53 17 0.08
54 7 0.03
55 8 0.04
57 44 0.21
ACGTcount: A:0.15, C:0.22, G:0.17, T:0.47
Consensus pattern (52 bp):
ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
Found at i:102397 original size:109 final size:102
Alignment explanation
Indices: 102268--102508 Score: 185
Period size: 109 Copynumber: 2.3 Consensus size: 102
102258 GATTATCTCG
102268 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGA-TTC-TTTCG-TTGCGATTTT
1 TTGCGATTTTCATTTCGCATTGCGA--TTC-TTTCG--TTGCGATTTCATTTCGATTGCGATTTT
*
102330 CATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCA
61 CATTTCGCATTGCGA--TTC-TCTCG--TTGCGATTTTCATTTCGCA
*
102377 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGA-TTC-TGTCG-TTGCGATTTT
1 TTGCGATTTTCATTTCGCATTGCGA--TTC-TTTCG--TTGCGATTTCATTTCGATTGCGATTTT
* * * * *
102439 CATTTCGCATTGCGATT-T-TCATTTCGCA-TTGCGATTCTCTCG
61 CATTTCGCATTGCGATTCTCTCGTTGCG-ATTTTC-ATT-TCGCA
102481 TTGCGATTTTCATTTCCGCATTGCGATT
1 TTGCGATTTTCATTT-CGCATTGCGATT
102509 TTCATGTTGG
Statistics
Matches: 122, Mismatches: 6, Indels: 14
0.86 0.04 0.10
Matches are distributed among these distances:
102 7 0.06
103 6 0.05
104 20 0.16
105 11 0.09
107 2 0.02
109 76 0.62
ACGTcount: A:0.14, C:0.22, G:0.17, T:0.47
Consensus pattern (102 bp):
TTGCGATTTTCATTTCGCATTGCGATTCTTTCGTTGCGATTTCATTTCGATTGCGATTTTCATTT
CGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCA
Found at i:105049 original size:24 final size:24
Alignment explanation
Indices: 105015--105061 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
105005 CTGAAACATC
105015 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
105039 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
105062 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:105767 original size:20 final size:20
Alignment explanation
Indices: 105739--106066 Score: 387
Period size: 20 Copynumber: 16.4 Consensus size: 20
105729 AAATTTAAGT
* * * *
105739 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATACGC
*
105759 GTTGCGATTTAC-GATTA-TC
1 GTTGCGATTTACGGA-TACGC
* * *
105778 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATACGC
*
105798 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
105818 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
105838 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
105858 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
105878 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
105898 ATTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
105918 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
105938 GTTGCGATATACGGATACGC
1 GTTGCGATTTACGGATACGC
* **
105958 ATTGCGATTTACCCATACGC
1 GTTGCGATTTACGGATACGC
*
105978 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATACGC
105998 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
* *
106018 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATACGC
* ** *
106038 GTTGCGATTTTCATATTCGC
1 GTTGCGATTTACGGATACGC
106058 GTTGCGATT
1 GTTGCGATT
106067 ATGGAAAATC
Statistics
Matches: 273, Mismatches: 26, Indels: 18
0.86 0.08 0.06
Matches are distributed among these distances:
19 21 0.08
20 248 0.91
21 4 0.01
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.35
Consensus pattern (20 bp):
GTTGCGATTTACGGATACGC
Found at i:106584 original size:21 final size:21
Alignment explanation
Indices: 106560--106652 Score: 118
Period size: 21 Copynumber: 4.4 Consensus size: 21
106550 TCCAAGTTCG
*
106560 CGTTGCGATTTATTTCAAATT
1 CGTTGCGATTTATTCCAAATT
106581 CGTTGCGATTTATTCCAAATT
1 CGTTGCGATTTATTCCAAATT
* *
106602 CGTTGCGA--TAGTCCAAGTT
1 CGTTGCGATTTATTCCAAATT
*
106621 CGCGTTGCGATTTATTCCAAGTT
1 --CGTTGCGATTTATTCCAAATT
106644 CGTTGCGAT
1 CGTTGCGAT
106653 AGTACCACGA
Statistics
Matches: 64, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
19 9 0.14
21 45 0.70
23 10 0.16
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.40
Consensus pattern (21 bp):
CGTTGCGATTTATTCCAAATT
Found at i:107280 original size:111 final size:110
Alignment explanation
Indices: 107080--107301 Score: 347
Period size: 111 Copynumber: 2.0 Consensus size: 110
107070 TTGGGAATTG
* * *
107080 TATTTAAGGCTTGGCTTTCCCACTTTCTGATGAGTGATAGAGAACAAGGGGACTCTCGGGCGCCG
1 TATTTAAGGCTTGGCTTTCCCACTTCCTAATGAGTGATAGAGAACAAGGGGACTCTCGCGCGCCG
107145 CCGCCGCCGCCGTCCGTCTCGTCTCG-GGTCGTGGTCGTGGTCGT
66 CCGCCGCCGCCGTCCGTCTCGTCTCGTGGTCGTGGTCGTGGTCGT
107189 TATTTAAGGCTTGGCTTTCCCACTTCCTTAATGAGTGATAGAGAACAAGGGGGACTCTCGCGCGC
1 TATTTAAGGCTTGGCTTTCCCACTTCC-TAATGAGTGATAGAGAACAA-GGGGACTCTCGCGCGC
* *
107254 CGCCGCCGCCGCCGTCTGTCTTGTCTCGTCTAGGTCGTGGTCGTGGTC
64 CGCCGCCGCCGCCGTCCGTCTCGTCTCG--T-GGTCGTGGTCGTGGTC
107302 ATACGTGTCT
Statistics
Matches: 102, Mismatches: 5, Indels: 6
0.90 0.04 0.05
Matches are distributed among these distances:
109 26 0.25
110 19 0.19
111 41 0.40
115 16 0.16
ACGTcount: A:0.14, C:0.28, G:0.31, T:0.27
Consensus pattern (110 bp):
TATTTAAGGCTTGGCTTTCCCACTTCCTAATGAGTGATAGAGAACAAGGGGACTCTCGCGCGCCG
CCGCCGCCGCCGTCCGTCTCGTCTCGTGGTCGTGGTCGTGGTCGT
Found at i:107297 original size:109 final size:108
Alignment explanation
Indices: 107080--107297 Score: 341
Period size: 109 Copynumber: 2.0 Consensus size: 108
107070 TTGGGAATTG
* * *
107080 TATTTAAGGCTTGGCTTTCCCACTTTCTGATGAGTGATAGAGAACAAGGGGACTCTCGGGCGCCG
1 TATTTAAGGCTTGGCTTTCCCACTTCCTAATGAGTGATAGAGAACAAGGGGACTCTCGCGCGCCG
107145 CCGCCGCCGCCGTCCGTCTCGTCTCGGGTCGTGGTCGTGGTCGT
66 CCGCCGCCGCCGTCCGTCTCGTCTC-GGTCGTGGTCGTGGTCGT
107189 TATTTAAGGCTTGGCTTTCCCACTTCCTTAATGAGTGATAGAGAACAAGGGGGACTCTCGCGCGC
1 TATTTAAGGCTTGGCTTTCCCACTTCC-TAATGAGTGATAGAGAACAA-GGGGACTCTCGCGCGC
* *
107254 CGCCGCCGCCGCCGTCTGTCTTGTCTC-GTC-TAGGTCGTGGTCGT
64 CGCCGCCGCCGCCGTCCGTCTCGTCTCGGTCGT-GGTCGTGGTCGT
107298 GGTCATACGT
Statistics
Matches: 101, Mismatches: 5, Indels: 6
0.90 0.04 0.05
Matches are distributed among these distances:
108 1 0.01
109 41 0.41
110 19 0.19
111 40 0.40
ACGTcount: A:0.14, C:0.28, G:0.30, T:0.28
Consensus pattern (108 bp):
TATTTAAGGCTTGGCTTTCCCACTTCCTAATGAGTGATAGAGAACAAGGGGACTCTCGCGCGCCG
CCGCCGCCGCCGTCCGTCTCGTCTCGGTCGTGGTCGTGGTCGT
Done.