Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009022.1 Hibiscus syriacus cultivar Beakdansim tig00112415_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81596
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:220 original size:19 final size:19
Alignment explanation
Indices: 177--220 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
167 TTTGCCATCC
* *
177 TTATAAAAAAGTTTGATCA
1 TTATAATAAAGTTTAATCA
*
196 -TATAATAAAGTTTAATTA
1 TTATAATAAAGTTTAATCA
214 TTATAAT
1 TTATAAT
221 TAACATAACG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.48, C:0.02, G:0.07, T:0.43
Consensus pattern (19 bp):
TTATAATAAAGTTTAATCA
Found at i:533 original size:25 final size:23
Alignment explanation
Indices: 494--555 Score: 61
Period size: 23 Copynumber: 2.6 Consensus size: 23
484 TAACTTTCAC
* *
494 GAACATGTTAATTTATATGTTTTGT
1 GAACATGTTAGTTTA-ACG-TTTGT
* *
519 GAACATGTTCGTTTAGCGTTTGT
1 GAACATGTTAGTTTAACGTTTGT
*
542 GAACATGTTTGTTT
1 GAACATGTTAGTTT
556 GACATTCGTT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
23 18 0.56
24 1 0.03
25 13 0.41
ACGTcount: A:0.23, C:0.08, G:0.21, T:0.48
Consensus pattern (23 bp):
GAACATGTTAGTTTAACGTTTGT
Found at i:1483 original size:88 final size:88
Alignment explanation
Indices: 1375--1550 Score: 343
Period size: 88 Copynumber: 2.0 Consensus size: 88
1365 AAGCCTAGTT
1375 GGATCAATCCATGGTAAGATTAATAACCCTCATCCTTCTAGCTTCATTTTGAGCTTCATTTCACA
1 GGATCAATCCATGGTAAGATTAATAACCCTCATCCTTCTAGCTTCATTTTGAGCTTCATTTCACA
1440 AGTTTTTAAGCATTGAACCAAAA
66 AGTTTTTAAGCATTGAACCAAAA
*
1463 GGATCAATCCATGGTAAGATTATTAACCCTCATCCTTCTAGCTTCATTTTGAGCTTCATTTCACA
1 GGATCAATCCATGGTAAGATTAATAACCCTCATCCTTCTAGCTTCATTTTGAGCTTCATTTCACA
1528 AGTTTTTAAGCATTGAACCAAAA
66 AGTTTTTAAGCATTGAACCAAAA
1551 ATGGGTTTGG
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
88 87 1.00
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.35
Consensus pattern (88 bp):
GGATCAATCCATGGTAAGATTAATAACCCTCATCCTTCTAGCTTCATTTTGAGCTTCATTTCACA
AGTTTTTAAGCATTGAACCAAAA
Found at i:3419 original size:96 final size:93
Alignment explanation
Indices: 3251--3435 Score: 300
Period size: 96 Copynumber: 2.0 Consensus size: 93
3241 TCATAATAAC
3251 CGGAGTAGGTAAGATCATGAGTAGATAAGATGTGAAGAGGATCATTTCCGATTTAGGGTTGAAGT
1 CGGAGTAGGTAAGATCATGAGTAGATAAGATGTGAAGAGGATCATTTCCGATTTAGGGTTGAAGT
3316 GGCCAAATATAT-TATATATATATCTCT
66 GGCCAAATATATATATATATATATCTCT
* * *
3343 CGGAGTAGGTCATATGATGAGTAGATAAGATCATGTGAAGAGGATCATTTCTCGATTTAGGGTTG
1 CGGAGTAGGTAAGATCATGAGTAGATAAG---ATGTGAAGAGGATCATTTC-CGATTTAGGGTTG
3408 AAGTGGCCAAATATATATATATATATAT
62 AAGTGGCCAAATATATATATATATATAT
3436 ATATGAAAAC
Statistics
Matches: 85, Mismatches: 3, Indels: 5
0.91 0.03 0.05
Matches are distributed among these distances:
92 26 0.31
95 19 0.22
96 29 0.34
97 11 0.13
ACGTcount: A:0.34, C:0.09, G:0.25, T:0.32
Consensus pattern (93 bp):
CGGAGTAGGTAAGATCATGAGTAGATAAGATGTGAAGAGGATCATTTCCGATTTAGGGTTGAAGT
GGCCAAATATATATATATATATATCTCT
Found at i:3481 original size:26 final size:28
Alignment explanation
Indices: 3446--3506 Score: 72
Period size: 26 Copynumber: 2.2 Consensus size: 28
3436 ATATGAAAAC
*
3446 TATAGATTTTAAAAAAC-TATATACAT-
1 TATATATTTTAAAAAACATATATACATA
* * *
3472 TATATATTTTCAAAACCATATATATATA
1 TATATATTTTAAAAAACATATATACATA
3500 TATATAT
1 TATATAT
3507 ATACACTATA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 14 0.48
27 8 0.28
28 7 0.24
ACGTcount: A:0.48, C:0.08, G:0.02, T:0.43
Consensus pattern (28 bp):
TATATATTTTAAAAAACATATATACATA
Found at i:3508 original size:41 final size:41
Alignment explanation
Indices: 3463--3548 Score: 129
Period size: 41 Copynumber: 2.1 Consensus size: 41
3453 TTTAAAAAAC
* *
3463 TATATACATTATATA-TTTTCAAAACCATATATATATATATA
1 TATATACACTATATATTTTTCAAAAAC-TATATATATATATA
*
3504 TATATACACTATATATTTTTCAAAAACTATATATATATTTA
1 TATATACACTATATATTTTTCAAAAACTATATATATATATA
3545 TATA
1 TATA
3549 CTATATAATA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
41 31 0.76
42 10 0.24
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (41 bp):
TATATACACTATATATTTTTCAAAAACTATATATATATATA
Found at i:8124 original size:84 final size:85
Alignment explanation
Indices: 7965--8128 Score: 215
Period size: 84 Copynumber: 1.9 Consensus size: 85
7955 ACGACACACG
* * * * *
7965 AATGTGTGTCATCTTCATTTATGATGGGGGCTTCAATGACACGCAATGTAAGTTATACATGCGTG
1 AATGTGTGTCATCTTCATTTATGATCGGGGCTTCAATGACACACAATGTAAGTCATAAATGCGCG
*
8030 TCATAAATTTATGACACAAA
66 CCATAAATTTATGACACAAA
* * *
8050 AATGTGTGTCATTTTCATTTATGA-CGGGGCTTCAATGACGCACAATGCT-CGTCATAAATGCGC
1 AATGTGTGTCATCTTCATTTATGATCGGGGCTTCAATGACACACAATG-TAAGTCATAAATGCGC
*
8113 GCCATAGATTTATGAC
65 GCCATAAATTTATGAC
8129 GCACAATTGC
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
84 44 0.65
85 24 0.35
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (85 bp):
AATGTGTGTCATCTTCATTTATGATCGGGGCTTCAATGACACACAATGTAAGTCATAAATGCGCG
CCATAAATTTATGACACAAA
Found at i:8145 original size:84 final size:84
Alignment explanation
Indices: 7972--8176 Score: 189
Period size: 84 Copynumber: 2.4 Consensus size: 84
7962 ACGAATGTGT
* * * * * * * *
7972 GTCATCTTCATTTATGATGGGGGCTTCAATGACACGCAATGTAAGTTATACATGCGTGTCATAAA
1 GTCATTTTCATTTATGA-CGGGGCTTCAATGACGCACAATGTAAGTCATAAATGCGCGCCATAAA
***
8037 TTTATGACACAAAAATGTGT
65 TTTATGACACAAAAATGCAC
* *
8057 GTCATTTTCATTTATGACGGGGCTTCAATGACGCACAATGCT-CGTCATAAATGCGCGCCATAGA
1 GTCATTTTCATTTATGACGGGGCTTCAATGACGCACAATG-TAAGTCATAAATGCGCGCCATAAA
* * *
8121 TTTATGACGCACAATTGCAC
65 TTTATGACACAAAAATGCAC
* *
8141 GTCATCTGAT-ATTTATGTCGGTGGCTTCAATGACGC
1 GTCAT-T-TTCATTTATGACGG-GGCTTCAATGACGC
8177 GAATTTGTGT
Statistics
Matches: 98, Mismatches: 18, Indels: 7
0.80 0.15 0.06
Matches are distributed among these distances:
84 55 0.56
85 28 0.29
86 15 0.15
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.32
Consensus pattern (84 bp):
GTCATTTTCATTTATGACGGGGCTTCAATGACGCACAATGTAAGTCATAAATGCGCGCCATAAAT
TTATGACACAAAAATGCAC
Found at i:13800 original size:17 final size:17
Alignment explanation
Indices: 13768--13801 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
13758 TAATGTGAAC
* *
13768 TTATTATTATTTAAAAT
1 TTATTATTAATAAAAAT
13785 TTATTATTAATAAAAAT
1 TTATTATTAATAAAAAT
13802 ATAAAAATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTATTATTAATAAAAAT
Found at i:16750 original size:22 final size:22
Alignment explanation
Indices: 16725--16768 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
16715 TCTCCGCCGG
16725 GTGG-AGATGAAACCACCACCGC
1 GTGGAAGATG-AACCACCACCGC
16747 GTGGAAGATGAACCACCACCGC
1 GTGGAAGATGAACCACCACCGC
16769 AAACCAAGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.32, C:0.32, G:0.27, T:0.09
Consensus pattern (22 bp):
GTGGAAGATGAACCACCACCGC
Found at i:22098 original size:22 final size:22
Alignment explanation
Indices: 22070--22128 Score: 118
Period size: 22 Copynumber: 2.7 Consensus size: 22
22060 TCCCCTGTGG
22070 GGGGAATCGGTTCCCCTTCAAA
1 GGGGAATCGGTTCCCCTTCAAA
22092 GGGGAATCGGTTCCCCTTCAAA
1 GGGGAATCGGTTCCCCTTCAAA
22114 GGGGAATCGGTTCCC
1 GGGGAATCGGTTCCC
22129 TCAGGGGGGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (22 bp):
GGGGAATCGGTTCCCCTTCAAA
Found at i:31339 original size:4 final size:4
Alignment explanation
Indices: 31330--31359 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
31320 ATTAACTAAA
31330 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
31360 GAAAATATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:32517 original size:21 final size:20
Alignment explanation
Indices: 32491--32588 Score: 81
Period size: 21 Copynumber: 4.8 Consensus size: 20
32481 ATCAGTTTCC
32491 AAAATCGCAACGCGATTCTTG
1 AAAATCGCAACGCGATT-TTG
* **
32512 AAAATCGCAATGCGATAGT-
1 AAAATCGCAACGCGATTTTG
** *
32531 ACAAATCCGCATTGCGATTTTCC
1 A-AAAT-CGCAACGCGATTTT-G
* *
32554 AAAATCGCAACGCGAATATG
1 AAAATCGCAACGCGATTTTG
32574 AAAATCGCAACGCGA
1 AAAATCGCAACGCGA
32589 ACACATAAAT
Statistics
Matches: 62, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
19 1 0.02
20 20 0.32
21 36 0.58
22 4 0.06
23 1 0.02
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.20
Consensus pattern (20 bp):
AAAATCGCAACGCGATTTTG
Found at i:32617 original size:20 final size:20
Alignment explanation
Indices: 32555--32824 Score: 269
Period size: 20 Copynumber: 13.5 Consensus size: 20
32545 CGATTTTCCA
* ** *
32555 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGTATCCGT
* *
32575 AAATCGCAACGCG-AACACAT
1 AAATCGCAACGCGTATC-CGT
32595 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
32615 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
32635 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
32655 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
32675 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
32695 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
* * *
32715 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGTATCCGT
*
32735 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
* * *
32755 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGTATCCGT
*
32775 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
* * *
32795 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGTATCCGT
*
32815 AAATCACAAC
1 AAATCGCAAC
32825 ACTGAAATTT
Statistics
Matches: 210, Mismatches: 32, Indels: 16
0.81 0.12 0.06
Matches are distributed among these distances:
19 2 0.01
20 206 0.98
21 2 0.01
ACGTcount: A:0.37, C:0.25, G:0.18, T:0.20
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:33984 original size:33 final size:34
Alignment explanation
Indices: 33947--34105 Score: 116
Period size: 32 Copynumber: 4.7 Consensus size: 34
33937 GCAACGAGAG
33947 AATCGCAATGCGAAATGAAAATCCCAAC-ATGAA
1 AATCGCAATGCGAAATGAAAATCCCAACAATGAA
*
33980 AATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGC-GAAATGAAAATCCCAA--C--AATGAA
* * * * *
34019 AATCGCAACGAGAGAATCG-CAAT-GCGA-AATG-A
1 AATCGCAATGCGA-AAT-GAAAATCCCAACAATGAA
* * *
34051 AATCGCAATGCGAAATG-AAATCGCAACGA-GAG
1 AATCGCAATGCGAAATGAAAATCCCAACAATGAA
*
34083 AATCGCAATGCGAAATTAAAATC
1 AATCGCAATGCGAAATGAAAATC
34106 GCATTGCGAT
Statistics
Matches: 102, Mismatches: 12, Indels: 24
0.74 0.09 0.17
Matches are distributed among these distances:
30 4 0.04
31 7 0.07
32 29 0.28
33 20 0.20
34 15 0.15
36 1 0.01
38 5 0.05
39 20 0.20
40 1 0.01
ACGTcount: A:0.46, C:0.18, G:0.21, T:0.15
Consensus pattern (34 bp):
AATCGCAATGCGAAATGAAAATCCCAACAATGAA
Found at i:34010 original size:53 final size:52
Alignment explanation
Indices: 33947--34114 Score: 261
Period size: 53 Copynumber: 3.2 Consensus size: 52
33937 GCAACGAGAG
* *
33947 AATCGCAATGCGAAATGAAAATCCCAAC-ATGAAAATCGCAATGCGGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGA-GAGAATCGCAATGC-GAAATGAA
34000 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATG-A
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAA
*
34051 AATCGCAATGCGAAATG-AAATCGCAACGAGAGAATCGCAATGCGAAATTAA
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAA
*
34102 AATCGCATTGCGA
1 AATCGCAATGCGA
34115 TTCTCCCGTT
Statistics
Matches: 109, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
50 31 0.28
51 31 0.28
52 6 0.06
53 40 0.37
54 1 0.01
ACGTcount: A:0.45, C:0.18, G:0.21, T:0.15
Consensus pattern (52 bp):
AATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAA
Found at i:34016 original size:19 final size:19
Alignment explanation
Indices: 33947--34114 Score: 163
Period size: 19 Copynumber: 9.7 Consensus size: 19
33937 GCAACGAGAG
33947 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
33966 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
33980 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
34000 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
34019 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
34033 AATCGCAATGCGAAATG-A
1 AATCGCAATGCGAAATGAA
34051 AATCGCAATGCGAAATG-A
1 AATCGCAATGCGAAATGAA
*
34069 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
*
34083 AATCGCAATGCGAAATTAA
1 AATCGCAATGCGAAATGAA
*
34102 AATCGCATTGCGA
1 AATCGCAATGCGA
34115 TTCTCCCGTT
Statistics
Matches: 124, Mismatches: 8, Indels: 34
0.75 0.05 0.20
Matches are distributed among these distances:
13 1 0.01
14 31 0.25
15 1 0.01
16 7 0.06
17 3 0.02
18 28 0.23
19 37 0.30
20 16 0.13
ACGTcount: A:0.45, C:0.18, G:0.21, T:0.15
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:34163 original size:19 final size:19
Alignment explanation
Indices: 34123--34220 Score: 143
Period size: 19 Copynumber: 5.4 Consensus size: 19
34113 GATTCTCCCG
34123 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
34143 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
34162 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
34176 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
34195 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
34214 TTGCGAT
1 TTGCGAT
34221 AGTCAATTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
14 6 0.08
16 7 0.10
17 7 0.10
19 36 0.51
20 15 0.21
ACGTcount: A:0.14, C:0.22, G:0.17, T:0.46
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:34217 original size:52 final size:53
Alignment explanation
Indices: 34104--34220 Score: 218
Period size: 53 Copynumber: 2.2 Consensus size: 53
34094 GAAATTAAAA
34104 TCGCATTGCGATTCTCCCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCCCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
*
34157 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTT-CGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCCCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
34209 TCGCATTGCGAT
1 TCGCATTGCGAT
34221 AGTCAATTTT
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
52 30 0.48
53 33 0.52
ACGTcount: A:0.14, C:0.25, G:0.18, T:0.44
Consensus pattern (53 bp):
TCGCATTGCGATTCTCCCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
Found at i:34346 original size:14 final size:14
Alignment explanation
Indices: 34327--34363 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
34317 CATCAATTAC
34327 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
34341 ACAAATCATCTTTT
1 ACAAATCAACTTTT
34355 ACAAATCAA
1 ACAAATCAA
34364 TTAAACAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:36357 original size:14 final size:14
Alignment explanation
Indices: 36338--36394 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
36328 GCGAAATGAA
*
36338 AATCGCAACGACAG
1 AATCGCAACGAAAG
36352 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
36369 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
36385 AATCGCAACG
1 AATCGCAACG
36395 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:36365 original size:33 final size:33
Alignment explanation
Indices: 36319--36411 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
36309 GCGAAACCAA
*
36319 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
36352 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
36385 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
36412 TGCGATTTTG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.47, C:0.22, G:0.20, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:36376 original size:19 final size:19
Alignment explanation
Indices: 36282--36416 Score: 128
Period size: 19 Copynumber: 7.6 Consensus size: 19
36272 TAGTTTACTT
* *
36282 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
36302 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
36321 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
36340 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
36354 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
36373 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
36387 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
36406 TCGCAATGCGA
1 TCGCAACGCGA
36417 TTTTGGTTTC
Statistics
Matches: 97, Mismatches: 8, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
14 16 0.16
16 11 0.11
17 11 0.11
19 47 0.48
20 12 0.12
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:36434 original size:19 final size:19
Alignment explanation
Indices: 36412--36540 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
36402 AAAATCGCAA
36412 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
36431 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
36445 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
36464 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
36478 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
36497 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
36516 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
36536 TGCGA
1 TGCGA
36541 AAGTAAACTA
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 22 0.24
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 48 0.53
20 13 0.14
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:36454 original size:33 final size:33
Alignment explanation
Indices: 36412--36503 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
36402 AAAATCGCAA
36412 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
36445 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
36478 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
36504 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 54 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.18, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:36723 original size:93 final size:93
Alignment explanation
Indices: 36587--37148 Score: 1081
Period size: 93 Copynumber: 6.1 Consensus size: 93
36577 ATGGATTGCA
36587 TTAC-TTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
36651 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
36679 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
36744 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
36772 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
36837 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
*
36865 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGATTACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
* *
36930 TAGCAGAATTGGCAGTAATCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
36958 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
37023 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
37051 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
*
37116 TAGCAGAATTGGCAGCAACCGAATAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
37144 TTACT
1 TTACT
37149 AAGCAATCTA
Statistics
Matches: 462, Mismatches: 7, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
92 4 0.01
93 458 0.99
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (93 bp):
TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
TAGCAGAATTGGCAGCAACCGAACAAAT
Found at i:38866 original size:14 final size:14
Alignment explanation
Indices: 38847--38936 Score: 72
Period size: 14 Copynumber: 5.7 Consensus size: 14
38837 TTGAAATGAA
38847 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
38861 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
38880 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
38894 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
38913 AATCGCAACGAGAG
1 AATCGCAACGAGAG
38927 AATCGCAACG
1 AATCGCAACG
38937 CGAAATGAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 20
0.72 0.05 0.23
Matches are distributed among these distances:
14 30 0.48
15 2 0.03
16 4 0.06
17 4 0.06
18 2 0.03
19 20 0.32
ACGTcount: A:0.44, C:0.22, G:0.24, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:38878 original size:33 final size:33
Alignment explanation
Indices: 38839--38952 Score: 221
Period size: 33 Copynumber: 3.5 Consensus size: 33
38829 TCTTTTGGTT
38839 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
38872 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
38905 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
38938 GAAATG-AAATCGCAA
1 GAAATGAAAATCGCAA
38953 TGCGATTTTG
Statistics
Matches: 81, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
32 9 0.11
33 72 0.89
ACGTcount: A:0.46, C:0.20, G:0.24, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:38885 original size:19 final size:19
Alignment explanation
Indices: 38861--38957 Score: 90
Period size: 14 Copynumber: 5.7 Consensus size: 19
38851 GCAACGAGAG
38861 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
38880 AATCGCAA--CG--A-GAG
1 AATCGCAACGCGAAATGAA
38894 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
38913 AATCGCAA--CG--A-GAG
1 AATCGCAACGCGAAATGAA
38927 AATCGCAACGCGAAATG-A
1 AATCGCAACGCGAAATGAA
*
38945 AATCGCAATGCGA
1 AATCGCAACGCGA
38958 TTTTGGTTTC
Statistics
Matches: 63, Mismatches: 5, Indels: 21
0.71 0.06 0.24
Matches are distributed among these distances:
14 20 0.32
15 2 0.03
16 4 0.06
17 4 0.06
18 14 0.22
19 19 0.30
ACGTcount: A:0.44, C:0.22, G:0.24, T:0.10
Consensus pattern (19 bp):
AATCGCAACGCGAAATGAA
Found at i:39001 original size:33 final size:33
Alignment explanation
Indices: 38964--39033 Score: 113
Period size: 33 Copynumber: 2.1 Consensus size: 33
38954 GCGATTTTGG
38964 TTTCGCGTTGCGATTATCTAGTTGCAATTTTCA
1 TTTCGCGTTGCGATTATCTAGTTGCAATTTTCA
* * *
38997 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTATCTAGTTGCAATTTTCA
39030 TTTC
1 TTTC
39034 TCTCGTTGCG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.13, C:0.21, G:0.19, T:0.47
Consensus pattern (33 bp):
TTTCGCGTTGCGATTATCTAGTTGCAATTTTCA
Found at i:39066 original size:41 final size:41
Alignment explanation
Indices: 39009--39086 Score: 147
Period size: 41 Copynumber: 1.9 Consensus size: 41
38999 TCGCGTTGCG
*
39009 ATTCTCTCGTTGCGATTTTCATTTCTCTCGTTGCGACAGTC
1 ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGACAGTC
39050 ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGAC
1 ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGAC
39087 TCTTCTGCAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.13, C:0.26, G:0.17, T:0.45
Consensus pattern (41 bp):
ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGACAGTC
Found at i:39071 original size:20 final size:21
Alignment explanation
Indices: 39010--39085 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
39000 CGCGTTGCGA
39010 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
***
39031 TTCTCTCGTTGCGACAGTCA-
1 TTCTCTCGTTGCGATTTTCAT
39051 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
*
39072 TTATCTCGTTGCGA
1 TTCTCTCGTTGCGA
39086 CTCTTCTGCA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
20 17 0.36
21 30 0.64
ACGTcount: A:0.12, C:0.25, G:0.17, T:0.46
Consensus pattern (21 bp):
TTCTCTCGTTGCGATTTTCAT
Found at i:39206 original size:33 final size:33
Alignment explanation
Indices: 39164--39234 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
39154 AATACTAACT
*
39164 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
39197 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
39230 TGAAA
1 TGAAA
39235 TCTAAGTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.48, C:0.18, G:0.23, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:39468 original size:22 final size:22
Alignment explanation
Indices: 39416--39470 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
39406 TGGTTGTGAG
**
39416 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
39438 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
39460 GGATTTCTTCG
1 GGATTTCTTCG
39471 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:39642 original size:20 final size:20
Alignment explanation
Indices: 39617--39770 Score: 168
Period size: 20 Copynumber: 7.7 Consensus size: 20
39607 CTTTAAATAT
39617 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
39637 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
39659 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
39678 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
*
39698 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
39718 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
39738 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
39758 CGCGTTGCGATTT
1 CGCGTTGCGATTT
39771 TTGGAAAATC
Statistics
Matches: 113, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
19 2 0.02
20 94 0.83
21 15 0.13
22 2 0.02
ACGTcount: A:0.18, C:0.18, G:0.27, T:0.37
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:39744 original size:40 final size:40
Alignment explanation
Indices: 39616--39770 Score: 186
Period size: 40 Copynumber: 3.9 Consensus size: 40
39606 GCTTTAAATA
*
39616 TCGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTAT
1 TCGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTGT
** * *
39657 TATCGTTGCGATTTACGGATACGCGTTGCGATATACG-GAT
1 TCGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTG-T
* *
39697 ACACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGT
1 TCGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTGT
* ** *
39737 TCGCGTTGCGATTTTCATATTCGCGTTGCGATTT
1 TCGCGTTGCGATTTACGGATACGCGTTGCGATTT
39771 TTGGAAAATC
Statistics
Matches: 96, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
40 66 0.69
41 30 0.31
ACGTcount: A:0.18, C:0.18, G:0.26, T:0.37
Consensus pattern (40 bp):
TCGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTGT
Found at i:40859 original size:22 final size:22
Alignment explanation
Indices: 40831--40882 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
40821 TAAGTTAATC
*
40831 TTGGGTTCGGGTTCATATCATG
1 TTGGGTTCGGGTTCATATCAGG
40853 TTGGGTTCGGGTTCATATCAGG
1 TTGGGTTCGGGTTCATATCAGG
40875 TTGGGTTC
1 TTGGGTTC
40883 AATGATCACA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.12, C:0.13, G:0.35, T:0.40
Consensus pattern (22 bp):
TTGGGTTCGGGTTCATATCAGG
Found at i:41388 original size:20 final size:20
Alignment explanation
Indices: 41351--41390 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
41341 TATTACACGT
*
41351 CAATAAATTAATTAATAAAA
1 CAATAAATAAATTAATAAAA
41371 CAATATAATAAATT-ATAAAA
1 CAATA-AATAAATTAATAAAA
41391 ATAAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (20 bp):
CAATAAATAAATTAATAAAA
Found at i:43508 original size:13 final size:13
Alignment explanation
Indices: 43490--43515 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
43480 AAGCTTCAAC
43490 ACATTCCTTAGCA
1 ACATTCCTTAGCA
43503 ACATTCCTTAGCA
1 ACATTCCTTAGCA
43516 GTTAGCACCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.31, G:0.08, T:0.31
Consensus pattern (13 bp):
ACATTCCTTAGCA
Found at i:59387 original size:30 final size:28
Alignment explanation
Indices: 59344--59439 Score: 90
Period size: 30 Copynumber: 3.4 Consensus size: 28
59334 GAAAATTTCC
* *
59344 ATAATTTATAATAAAGGACAACATTTTTTT
1 ATAAATTACAATAAA-GA-AACATTTTTTT
59374 ATAAATTACAATAAAG-AACA-TTTTTT
1 ATAAATTACAATAAAGAAACATTTTTTT
* *
59400 GTAAATTACAATAAA-AAGAAATTATATTTT
1 ATAAATTACAATAAAGAA-ACATT-T-TTTT
59430 ATAAATTACA
1 ATAAATTACA
59440 GTAATGGCAT
Statistics
Matches: 56, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
26 21 0.38
27 6 0.11
28 1 0.02
29 2 0.04
30 26 0.46
ACGTcount: A:0.50, C:0.06, G:0.05, T:0.39
Consensus pattern (28 bp):
ATAAATTACAATAAAGAAACATTTTTTT
Found at i:59404 original size:26 final size:27
Alignment explanation
Indices: 59363--59439 Score: 95
Period size: 26 Copynumber: 2.8 Consensus size: 27
59353 AATAAAGGAC
59363 AACATTTTTTTATAAATTACAATAAAG
1 AACATTTTTTTATAAATTACAATAAAG
*
59390 AACA-TTTTTTGTAAATTACAATAAAAAG
1 AACATTTTTTTATAAATTACAAT--AAAG
59418 AA-ATTATATTTTATAAATTACA
1 AACATT-T-TTTTATAAATTACA
59440 GTAATGGCAT
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
26 17 0.40
27 5 0.12
28 7 0.16
29 1 0.02
30 13 0.30
ACGTcount: A:0.49, C:0.06, G:0.04, T:0.40
Consensus pattern (27 bp):
AACATTTTTTTATAAATTACAATAAAG
Found at i:63559 original size:2 final size:2
Alignment explanation
Indices: 63554--63582 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
63544 ACACACACAC
63554 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
63583 GGGTTTGTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:67227 original size:21 final size:21
Alignment explanation
Indices: 67202--67246 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
67192 AAAAATATTA
**
67202 AAAAATATTAATATTTTAAAT
1 AAAAATAAAAATATTTTAAAT
67223 AAAAATAAAAATATTTTAAAT
1 AAAAATAAAAATATTTTAAAT
67244 AAA
1 AAA
67247 TTTTTACTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (21 bp):
AAAAATAAAAATATTTTAAAT
Found at i:68313 original size:17 final size:17
Alignment explanation
Indices: 68287--68319 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
68277 GATACCTCAT
*
68287 AATTTTAAATATTTCAA
1 AATTTAAAATATTTCAA
68304 AATTTAAAATATTTCA
1 AATTTAAAATATTTCA
68320 TATTGTGCTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (17 bp):
AATTTAAAATATTTCAA
Done.