Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009024.1 Hibiscus syriacus cultivar Beakdansim tig00112420_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60207

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1271--1445
90
2.0
89
88
3
262
38
8
6
46
1.60
7318--7495
90
2.0
90
90
0
284
38
12
5
43
1.66
8949--9526
137
4.2
137
90
0
879
31
27
16
24
1.96
9685--9722
3
13.0
3
91
5
51
39
0
0
60
0.97
13290--13339
16
3.2
16
75
11
50
60
4
8
28
1.43
13436--13736
2
151.5
2
65
21
100
48
3
3
43
1.39
13464--13509
11
4.5
11
74
20
55
50
6
0
43
1.28
13431--13594
13
12.8
13
69
18
85
48
4
3
43
1.42
13576--13653
40
2.0
40
92
5
131
51
2
5
41
1.38
14017--14139
2
62.0
2
89
7
189
49
2
0
47
1.20
14303--14427
20
6.1
21
71
20
79
42
7
7
43
1.59
14507--14546
22
1.9
21
90
10
64
37
5
5
52
1.45
14729--14818
16
5.3
16
71
25
69
46
0
2
51
1.13
14729--14791
12
5.1
12
74
22
51
49
0
1
49
1.10
14730--14814
23
3.8
22
75
17
59
47
0
2
50
1.14
15296--15335
20
2.0
21
85
5
55
27
27
2
42
1.68
15578--15624
6
7.7
6
92
2
76
48
46
0
4
1.21
15578--15693
18
6.4
18
78
5
83
44
41
6
7
1.58
17752--17794
21
2.0
21
81
0
50
18
9
6
65
1.44
18855--18894
11
3.5
11
83
6
53
40
7
5
47
1.54
19145--19199
23
2.3
24
87
3
85
47
7
1
43
1.41
19254--19280
13
2.1
13
100
0
54
44
0
0
55
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19484--19538
16
3.4
16
74
0
56
34
16
25
23
1.95
20185--20282
43
2.2
44
82
7
128
30
16
23
29
1.96
20258--20343
44
2.0
44
93
4
147
27
15
24
32
1.95
20706--20755
21
2.4
21
86
0
73
0
34
18
48
1.48
25572--25597
9
2.9
9
100
0
52
23
23
0
53
1.46
29638--29713
39
1.9
39
94
0
134
55
17
13
14
1.70
30693--30722
3
10.0
3
100
0
60
66
0
0
33
0.92
38614--38690
39
1.9
39
89
7
120
45
0
2
51
1.14
41749--41789
21
1.9
22
90
5
66
26
19
17
36
1.94
52817--52851
18
1.9
18
100
0
70
22
17
34
25
1.96

Tables:   1

The End!