genome.fa.s9027.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009027.1 Hibiscus syriacus cultivar Beakdansim tig00112424_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69277

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1627--2095	237	2.0	231	95	4	843	23	23	21	30	1.99
2943--2980	14	2.8	14	88	4	51	31	2	7	57	1.41
3420--3528	32	3.3	32	72	20	107	23	22	17	36	1.94
10998--11031	14	2.5	13	86	9	50	29	20	5	44	1.75
15841--15929	29	3.1	29	83	0	115	15	32	32	19	1.93
15980--16026	22	2.1	22	96	0	85	12	34	29	23	1.92
16032--16091	31	1.9	31	93	0	102	26	35	13	25	1.93
20542--20796	40	6.4	39	72	10	194	34	23	17	23	1.96
20461--20811	160	2.2	160	94	0	605	33	24	16	25	1.96
20461--20811	20	17.6	20	71	12	172	33	24	16	25	1.96
24024--24059	18	2.0	18	94	0	63	55	25	2	16	1.55
24345--24390	20	2.3	20	92	0	74	43	28	17	10	1.82
24508--24557	25	2.0	25	96	0	91	26	8	22	44	1.80
24944--25006	6	10.5	6	87	0	90	30	1	15	52	1.53
24936--25010	24	3.1	24	92	0	123	32	2	17	48	1.61
25315--25401	39	2.2	39	93	0	147	49	19	13	17	1.79
25577--25653	20	4.2	20	66	19	67	41	19	19	19	1.91
25806--25859	14	3.9	14	82	0	72	48	18	0	33	1.49
28650--28692	20	2.2	20	91	4	70	11	18	25	44	1.84
28721--28752	13	2.5	13	100	0	64	78	15	6	0	0.95
28725--28758	13	2.8	12	91	8	52	76	14	8	0	1.01
28965--29007	22	2.0	22	90	0	68	25	13	37	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29139--29367	20	11.2	20	77	14	209	21	17	23	36	1.95
29148--29325	66	2.8	66	78	9	158	21	19	23	35	1.95
31617--31651	14	2.6	14	95	4	63	11	17	54	17	1.71
32048--32081	16	2.1	16	94	0	59	32	8	26	32	1.87
32832--32863	15	2.1	16	94	5	57	50	18	25	6	1.70
36125--36165	13	3.2	13	93	6	75	14	14	56	14	1.69
36125--36164	12	3.2	12	96	3	71	15	15	55	15	1.71
36715--36802	20	4.3	20	76	2	86	32	22	19	25	1.97
36796--36883	20	4.3	20	78	7	88	40	22	14	21	1.90
36796--36883	40	2.2	40	81	6	106	40	22	14	21	1.90
36865--36922	19	3.0	20	89	5	91	36	20	12	31	1.89
37711--37744	12	2.8	12	90	0	50	55	29	0	14	1.40
37868--37923	24	2.3	24	93	0	94	23	17	17	41	1.90
40498--40547	20	2.5	20	93	0	82	44	16	20	20	1.87
40614--40651	20	1.9	20	100	0	76	13	18	26	42	1.87
40706--40742	14	2.6	14	100	0	74	48	21	0	29	1.50
42444--42490	20	2.3	20	96	0	85	10	14	21	53	1.71
42840--42919	22	3.6	22	93	0	133	17	15	45	22	1.85
43023--43104	20	4.1	19	81	10	101	19	13	24	42	1.87
43028--43111	41	2.1	40	91	6	134	19	10	25	45	1.82
43044--43135	41	2.3	40	87	7	132	20	13	23	42	1.87
43113--43196	20	4.2	20	70	3	78	27	20	22	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47924--47973	24	2.0	25	84	3	66	10	32	10	48	1.70
48814--48898	31	2.7	32	82	7	95	22	5	5	65	1.36
48936--48995	21	2.9	20	75	7	66	66	3	8	21	1.33
49149--49206	10	5.5	10	78	10	53	68	8	1	20	1.25
49149--49206	21	2.7	21	75	2	62	68	8	1	20	1.25
49149--49222	32	2.3	32	84	9	89	66	8	4	21	1.35
50365--50404	17	2.5	15	77	14	53	50	0	0	50	1.00
50568--50634	30	2.3	31	75	17	79	38	1	2	56	1.24
52211--52269	21	2.8	21	94	0	100	20	35	16	27	1.94
52208--52277	21	3.3	21	84	11	90	20	31	21	27	1.98
52787--52859	34	2.1	34	89	0	110	49	5	6	38	1.53
52969--52995	14	1.9	14	100	0	54	51	14	3	29	1.60
53063--53190	63	2.0	63	93	3	222	37	22	0	39	1.60
53082--53187	23	4.9	22	68	20	80	36	19	0	42	1.58
56744--56802	25	2.3	25	80	11	66	38	0	1	59	1.08
56785--56847	22	2.9	22	80	7	65	50	0	0	49	1.00
56826--56861	18	1.9	19	88	5	56	50	0	0	50	1.00
57732--57771	21	2.0	20	85	5	53	45	2	2	50	1.28
58883--59065	91	2.0	91	95	0	330	32	18	17	31	1.94
66114--66191	19	4.1	19	89	1	111	28	30	19	21	1.97
66114--66187	39	1.9	38	88	2	112	27	32	20	20	1.97
68577--68611	18	1.9	18	88	0	52	25	31	22	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69198--69277	38	2.1	38	85	0	106	25	23	23	27	2.00

Tables:   1

The End!