Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009028.1 Hibiscus syriacus cultivar Beakdansim tig00112428_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 486293
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
File 2 of 2
Found at i:217520 original size:14 final size:14
Alignment explanation
Indices: 217501--217590 Score: 63
Period size: 14 Copynumber: 5.7 Consensus size: 14
217491 TTGAAATGAA
217501 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
217515 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
*
217534 AATCGCAACTAGAG
1 AATCGCAACGAGAG
*
217548 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
217567 AATCGCAACGAGAG
1 AATCGCAACGAGAG
217581 AATCGCAACG
1 AATCGCAACG
217591 CGAAATGAAA
Statistics
Matches: 60, Mismatches: 6, Indels: 20
0.70 0.07 0.23
Matches are distributed among these distances:
14 30 0.50
15 2 0.03
16 3 0.05
17 3 0.05
18 2 0.03
19 20 0.33
ACGTcount: A:0.44, C:0.22, G:0.23, T:0.10
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:217531 original size:33 final size:33
Alignment explanation
Indices: 217493--217607 Score: 221
Period size: 33 Copynumber: 3.5 Consensus size: 33
217483 GTCTTTGGTT
217493 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
*
217526 GAAATGAAAATCGCAACTAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
217559 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
217592 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
217608 TGCGATTTTG
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 80 1.00
ACGTcount: A:0.47, C:0.20, G:0.23, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:217539 original size:19 final size:19
Alignment explanation
Indices: 217515--217612 Score: 90
Period size: 19 Copynumber: 5.7 Consensus size: 19
217505 GCAACGAGAG
217515 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
* *
217534 AATCGCAA--C--TA-GAG
1 AATCGCAACGCGAAATGAA
217548 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
217567 AATCGCAA--CG--A-GAG
1 AATCGCAACGCGAAATGAA
217581 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
217600 AATCGCAATGCGA
1 AATCGCAACGCGA
217613 TTTTGGTTTC
Statistics
Matches: 62, Mismatches: 7, Indels: 20
0.70 0.08 0.22
Matches are distributed among these distances:
14 20 0.32
15 2 0.03
16 3 0.05
17 3 0.05
18 2 0.03
19 32 0.52
ACGTcount: A:0.45, C:0.21, G:0.22, T:0.11
Consensus pattern (19 bp):
AATCGCAACGCGAAATGAA
Found at i:217656 original size:33 final size:33
Alignment explanation
Indices: 217608--217697 Score: 144
Period size: 33 Copynumber: 2.7 Consensus size: 33
217598 AAAATCGCAA
**
217608 TGCGATTTTGGTTTCGCGTTGCGATTCTCTAGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTAGT
*
217641 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTAGT
*
217674 TGCGATTTTCATTTCTCGTTGCGA
1 TGCGATTTTCATTTCGCGTTGCGA
217698 CAGTCATTCT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 53 1.00
ACGTcount: A:0.10, C:0.21, G:0.23, T:0.46
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTAGT
Found at i:217663 original size:19 final size:19
Alignment explanation
Indices: 217639--217738 Score: 102
Period size: 19 Copynumber: 5.4 Consensus size: 19
217629 CGATTCTCTA
*
217639 GTTGCGATTTTCATTTCGC
1 GTTGCGATTTTCATTTCTC
217658 GTTGCGA--TTC---TCTC
1 GTTGCGATTTTCATTTCTC
217672 GTTGCGATTTTCATTTCTC
1 GTTGCGATTTTCATTTCTC
***
217691 GTTGCGACAGTCATTCTCTC
1 GTTGCGATTTTCATT-TCTC
217711 GTTGCGATTTTCATTTATCTC
1 GTTGCGATTTTCA-TT-TCTC
217732 GTTGCGA
1 GTTGCGA
217739 CTTCTGCAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
14 10 0.15
16 3 0.05
17 3 0.05
19 23 0.35
20 14 0.21
21 13 0.20
ACGTcount: A:0.12, C:0.23, G:0.20, T:0.45
Consensus pattern (19 bp):
GTTGCGATTTTCATTTCTC
Found at i:217676 original size:14 final size:14
Alignment explanation
Indices: 217624--217680 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
217614 TTTGGTTTCG
217624 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
* *
217638 AGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
217657 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
217671 CGTTGCGATT
1 CGTTGCGATT
217681 TTCATTTCTC
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
14 19 0.56
16 3 0.09
17 3 0.09
19 9 0.26
ACGTcount: A:0.11, C:0.23, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:217718 original size:39 final size:36
Alignment explanation
Indices: 217629--217739 Score: 138
Period size: 33 Copynumber: 3.0 Consensus size: 36
217619 TTTCGCGTTG
* *
217629 CGATTCTCTAGTTGCGATTTTCATTTCGCGTT--G-
1 CGATTCTCTCGTTGCGATTTTCATTTCTCGTTGCGA
217662 CGATTCTCTCGTTGCGATTTTCATTTCTCGTTGCGA
1 CGATTCTCTCGTTGCGATTTTCATTTCTCGTTGCGA
217698 CAGTCATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGA
1 C-G--ATTCTCTCGTTGCGATTTTCA-TT-TCTCGTTGCGA
217739 C
1 C
217740 TTCTGCAAAT
Statistics
Matches: 68, Mismatches: 2, Indels: 8
0.87 0.03 0.10
Matches are distributed among these distances:
33 30 0.44
35 1 0.01
36 1 0.01
37 1 0.01
39 21 0.31
40 2 0.03
41 12 0.18
ACGTcount: A:0.13, C:0.24, G:0.19, T:0.44
Consensus pattern (36 bp):
CGATTCTCTCGTTGCGATTTTCATTTCTCGTTGCGA
Found at i:217724 original size:20 final size:20
Alignment explanation
Indices: 217664--217738 Score: 98
Period size: 20 Copynumber: 3.8 Consensus size: 20
217654 TCGCGTTGCG
217664 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
***
217684 ATT-TCTCGTTGCGACAGTC
1 ATTCTCTCGTTGCGATTTTC
217703 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
217723 ATTTATCTCGTTGCGA
1 A-TTCTCTCGTTGCGA
217739 CTTCTGCAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
19 16 0.35
20 17 0.37
21 13 0.28
ACGTcount: A:0.13, C:0.24, G:0.17, T:0.45
Consensus pattern (20 bp):
ATTCTCTCGTTGCGATTTTC
Found at i:217874 original size:32 final size:33
Alignment explanation
Indices: 217814--217882 Score: 104
Period size: 32 Copynumber: 2.1 Consensus size: 33
217804 AATACTAACT
*
217814 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
217847 TGAAAATCGC-ACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
217879 TGAA
1 TGAA
217883 TCTAAGTGAA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 23 0.70
33 10 0.30
ACGTcount: A:0.46, C:0.19, G:0.23, T:0.12
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:218116 original size:22 final size:22
Alignment explanation
Indices: 218064--218118 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
218054 TGGTTGTGAG
**
218064 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
218086 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
218108 GGATTTCTTCG
1 GGATTTCTTCG
218119 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:218290 original size:20 final size:20
Alignment explanation
Indices: 218265--218418 Score: 159
Period size: 20 Copynumber: 7.7 Consensus size: 20
218255 CTTTAAATAT
218265 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
218285 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
218307 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
218326 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
**
218346 TACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
218366 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
218386 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
218406 CGCGTTGCGATTT
1 CGCGTTGCGATTT
218419 TGGAAAATCG
Statistics
Matches: 111, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
19 2 0.02
20 92 0.83
21 15 0.14
22 2 0.02
ACGTcount: A:0.18, C:0.18, G:0.27, T:0.38
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:218392 original size:40 final size:40
Alignment explanation
Indices: 218264--218418 Score: 179
Period size: 40 Copynumber: 3.9 Consensus size: 40
218254 GCTTTAAATA
*
218264 TCGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTAT
1 TCGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTGT
** * *
218305 TATCGTTGCGATTTACGGATACGCGTTGCGATATACG-GAT
1 TCGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTG-T
*
218345 AT-ACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGT
1 -TCGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTGT
* ** *
218385 TCGCGTTGCGATTTTCATATTCGCGTTGCGATTT
1 TCGCGTTGCGATTTACGGATACGCGTTGCGATTT
218419 TGGAAAATCG
Statistics
Matches: 97, Mismatches: 13, Indels: 9
0.82 0.11 0.08
Matches are distributed among these distances:
39 1 0.01
40 65 0.67
41 31 0.32
ACGTcount: A:0.18, C:0.17, G:0.26, T:0.38
Consensus pattern (40 bp):
TCGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTGT
Found at i:218435 original size:21 final size:21
Alignment explanation
Indices: 218411--218460 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
218401 ATATTCGCGT
218411 TGCGATTTTGGAAAATCGCAA
1 TGCGATTTTGGAAAATCGCAA
* * ** *
218432 TGCGAATTTGTACTATCGCAT
1 TGCGATTTTGGAAAATCGCAA
218453 TGCGATTT
1 TGCGATTT
218461 CAAGATCGCG
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (21 bp):
TGCGATTTTGGAAAATCGCAA
Found at i:218515 original size:20 final size:20
Alignment explanation
Indices: 218490--218558 Score: 75
Period size: 20 Copynumber: 3.4 Consensus size: 20
218480 GGAAACTGAT
218490 TTGCGATTCTGGGGATCGCG
1 TTGCGATTCTGGGGATCGCG
* ** * **
218510 TTGCGATTTTGGAAAACTGAT
1 TTGCGATTCTGGGGATC-GCG
218531 TTGCGATTCTGGGGATCGCG
1 TTGCGATTCTGGGGATCGCG
218551 TTGCGATT
1 TTGCGATT
218559 TTTATTTCGC
Statistics
Matches: 36, Mismatches: 12, Indels: 2
0.72 0.24 0.04
Matches are distributed among these distances:
20 22 0.61
21 14 0.39
ACGTcount: A:0.16, C:0.16, G:0.33, T:0.35
Consensus pattern (20 bp):
TTGCGATTCTGGGGATCGCG
Found at i:218538 original size:41 final size:40
Alignment explanation
Indices: 218464--218560 Score: 178
Period size: 41 Copynumber: 2.4 Consensus size: 40
218454 GCGATTTCAA
218464 GATCGCGTTGCGA-TTTGGAAACTGATTTGCGATTCTGGG
1 GATCGCGTTGCGATTTTGGAAACTGATTTGCGATTCTGGG
218503 GATCGCGTTGCGATTTTGGAAAACTGATTTGCGATTCTGGG
1 GATCGCGTTGCGATTTTGG-AAACTGATTTGCGATTCTGGG
218544 GATCGCGTTGCGATTTT
1 GATCGCGTTGCGATTTT
218561 TATTTCGCGT
Statistics
Matches: 56, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
39 13 0.23
40 5 0.09
41 38 0.68
ACGTcount: A:0.18, C:0.15, G:0.32, T:0.35
Consensus pattern (40 bp):
GATCGCGTTGCGATTTTGGAAACTGATTTGCGATTCTGGG
Found at i:218794 original size:21 final size:21
Alignment explanation
Indices: 218769--218812 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
218759 AATGTTTAAC
*
218769 AATAACAAAATCGGTATAA-AA
1 AATAACAAAACCGGT-TAACAA
218790 AATAACAAAACCGGTTAACAA
1 AATAACAAAACCGGTTAACAA
218811 AA
1 AA
218813 CCAGTAAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.61, C:0.14, G:0.09, T:0.16
Consensus pattern (21 bp):
AATAACAAAACCGGTTAACAA
Found at i:219610 original size:157 final size:158
Alignment explanation
Indices: 219389--219703 Score: 614
Period size: 157 Copynumber: 2.0 Consensus size: 158
219379 TATTATTCCT
219389 TTTCATGTTGAGTATCCGCCTTTTAATTTCATCAATCAGATTACTTAACTAAAATATTGCCAATA
1 TTTCATGTTGAGTATCCGCCTTTTAATTTCATCAATCAGATTACTTAACTAAAATATTGCCAATA
219454 AAGTCACCCGATTAGGTACAAAATAAATTAATTAAAATTAAGAAAAATATCCTCCAA-TGTAGTG
66 AAGTCACCCGATTAGGTACAAAATAAATTAATTAAAATTAAGAAAAATATCCTCCAATTGTAGTG
219518 ACATGTGTCACCACCATATAATTGGAAC
131 ACATGTGTCACCACCATATAATTGGAAC
219546 TTTCATGTTGAGTATCCGCCTTTTAATTTCATCAATCAGATTACTTAACTAAAATATTGCCAATA
1 TTTCATGTTGAGTATCCGCCTTTTAATTTCATCAATCAGATTACTTAACTAAAATATTGCCAATA
219611 AAGTCACCCGATTAGGTACAAAATAAATTAATTAAAATTAAGAAAAATATCCTCCAATTTGTAGT
66 AAGTCACCCGATTAGGTACAAAATAAATTAATTAAAATTAAGAAAAATATCCTCCAA-TTGTAGT
219676 GACATGTGTCACCACCATATAATTGGAA
130 GACATGTGTCACCACCATATAATTGGAA
219704 ATTAAATTTA
Statistics
Matches: 156, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
157 122 0.78
159 34 0.22
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.32
Consensus pattern (158 bp):
TTTCATGTTGAGTATCCGCCTTTTAATTTCATCAATCAGATTACTTAACTAAAATATTGCCAATA
AAGTCACCCGATTAGGTACAAAATAAATTAATTAAAATTAAGAAAAATATCCTCCAATTGTAGTG
ACATGTGTCACCACCATATAATTGGAAC
Found at i:227002 original size:4 final size:4
Alignment explanation
Indices: 226993--227025 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
226983 GAAACAATTA
226993 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A
227026 CACACACTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAC
Found at i:232104 original size:25 final size:26
Alignment explanation
Indices: 232056--232145 Score: 98
Period size: 25 Copynumber: 3.5 Consensus size: 26
232046 TTAAATTCAT
*
232056 AATATTTTATA-TATA-TTAACTTAAA
1 AATATTTTATATTA-ACTTAATTTAAA
232081 AATATCTTTATATTAACTT-A-TTAAA
1 AATAT-TTTATATTAACTTAATTTAAA
*
232106 TATATTTTATTATTAACTTAATTTAAA
1 AATATTTTA-TATTAACTTAATTTAAA
*
232133 AATATTTTTTATT
1 AATATTTTATATT
232146 TTTATTTTCA
Statistics
Matches: 56, Mismatches: 3, Indels: 11
0.80 0.04 0.16
Matches are distributed among these distances:
24 4 0.07
25 23 0.41
26 13 0.23
27 16 0.29
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.53
Consensus pattern (26 bp):
AATATTTTATATTAACTTAATTTAAA
Found at i:232145 original size:29 final size:29
Alignment explanation
Indices: 232071--232175 Score: 87
Period size: 29 Copynumber: 3.8 Consensus size: 29
232061 TTTATATATA
* *
232071 TTAACTTAAAAATA-TCTTTA-TATTAAC
1 TTAATTTAAAAATATTTTTTATTATTAAC
*
232098 TT-A-TT--AAATATATTTTATTATTAAC
1 TTAATTTAAAAATATTTTTTATTATTAAC
* **
232123 TTAATTTAAAAATATTTTTTATTTTTATT
1 TTAATTTAAAAATATTTTTTATTATTAAC
*
232152 TTCATTTAAAAATATATATTTTAT
1 TTAATTTAAAAATAT-T-TTTTAT
232176 GTTAAAATTT
Statistics
Matches: 63, Mismatches: 7, Indels: 12
0.77 0.09 0.15
Matches are distributed among these distances:
23 5 0.08
24 4 0.06
25 11 0.17
26 2 0.03
27 4 0.06
29 30 0.48
30 1 0.02
31 6 0.10
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (29 bp):
TTAATTTAAAAATATTTTTTATTATTAAC
Found at i:232190 original size:31 final size:29
Alignment explanation
Indices: 232126--232195 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 29
232116 TATTAACTTA
** *
232126 ATTTAAAAATATTTTTTATTTTTATTTTC
1 ATTTAAAAATATTTTTTATTTAAAATTTC
232155 ATTTAAAAATATATATTTTATGTTAAAATTT-
1 ATTTAAAAATAT-T-TTTTAT-TTAAAATTTC
232186 ATTTAAAAAT
1 ATTTAAAAAT
232196 GTTTGACCCC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
29 12 0.34
30 1 0.03
31 16 0.46
32 6 0.17
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (29 bp):
ATTTAAAAATATTTTTTATTTAAAATTTC
Found at i:232316 original size:31 final size:31
Alignment explanation
Indices: 232281--232347 Score: 107
Period size: 31 Copynumber: 2.2 Consensus size: 31
232271 GATAACTATG
* * *
232281 TCTTAATTAAATAAAAATGAAAGTGGTCATA
1 TCTTAATTAAATAAAAACGAAACTGCTCATA
232312 TCTTAATTAAATAAAAACGAAACTGCTCATA
1 TCTTAATTAAATAAAAACGAAACTGCTCATA
232343 TCTTA
1 TCTTA
232348 TATTTTTTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (31 bp):
TCTTAATTAAATAAAAACGAAACTGCTCATA
Found at i:233669 original size:31 final size:33
Alignment explanation
Indices: 233634--233698 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
233624 GTTTATTTTA
* *
233634 ATTTTATCTC-TTTATTTTC-ATGGTTAATTAT
1 ATTTTACCTCTTTTATTTTCTATGATTAATTAT
233665 ATTTTACCTCTTTTATTTTCTATGATTAATTAT
1 ATTTTACCTCTTTTATTTTCTATGATTAATTAT
233698 A
1 A
233699 CTTTGATCCC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 9 0.30
32 9 0.30
33 12 0.40
ACGTcount: A:0.25, C:0.11, G:0.05, T:0.60
Consensus pattern (33 bp):
ATTTTACCTCTTTTATTTTCTATGATTAATTAT
Found at i:237881 original size:224 final size:227
Alignment explanation
Indices: 237464--237902 Score: 525
Period size: 224 Copynumber: 1.9 Consensus size: 227
237454 GGTTTAGGAT
* ** * * *
237464 CGTTCGATAAGTGAAAACAGATTACTGTTATTAAAAATAAAAAATGTGAATATATTTACTGGGAA
1 CGTTCGATAAGTGAAAACAGATAACTGAGATTAAAAATAAAAAATGTAAAGATATTCACT-GGAA
* *
237529 AAAAACAAAGAGTCAATTTCAGTCATTAATTTTCACTCATCCAACGATCCTAAATCTGTGTAAAA
65 AAAAACAAAGAATC-ATCTCAGTCATTAATTTTCACTCATCCAACGATCCTAAATCTGTGTAAAA
* * * * *
237594 CTAAAGAGTTTTACATTTATGTAAGTGGATCCTAACACAAGATAGGGCATGCCCACTTACACAAT
129 CTAAAGAGTTTTACATTTACGTAAGTGAATCCTAACACAAGATAAGACATACCCACTTACACAAT
*
237659 ATAAAACTCTTTTAGTTTTATATAGATTTAAGAC
194 ATAAAACTCTTTTAATTTTATATAGATTTAAGAC
* *
237693 CGTTCGATAAGTGAAAACAGATAACTGAGATTAAAATTAAGAAATGTAAAGATATTCACT-GAAA
1 CGTTCGATAAGTGAAAACAGATAACTGAGATTAAAAATAAAAAATGTAAAGATATTCACTGGAAA
* * * * *
237757 AAATA-AGAAGAATC-TCT-A-TCATTCATTTTCGCTCATTCAGCGATCTTAAATCTGTGTAAAA
66 AAA-ACA-AAGAATCATCTCAGTCATTAATTTTCACTCATCCAACGATCCTAAATCTGTGTAAAA
* * * *
237818 CTAAAGAGTTTTACA-TTGCGTAAGTGAATTCTAACCCAAGATAAGACAAAATACTC-C-TACAC
129 CTAAAGAGTTTTACATTTACGTAAGTGAATCCTAACACAAGATAAGAC---ATACCCACTTACAC
*
237880 AATGTAAAACTCTTTTAATTTTA
191 AATATAAAACTCTTTTAATTTTA
237903 CATAAATATG
Statistics
Matches: 179, Mismatches: 26, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
223 25 0.14
224 79 0.44
225 2 0.01
226 6 0.03
227 8 0.04
228 7 0.04
229 52 0.29
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (227 bp):
CGTTCGATAAGTGAAAACAGATAACTGAGATTAAAAATAAAAAATGTAAAGATATTCACTGGAAA
AAAACAAAGAATCATCTCAGTCATTAATTTTCACTCATCCAACGATCCTAAATCTGTGTAAAACT
AAAGAGTTTTACATTTACGTAAGTGAATCCTAACACAAGATAAGACATACCCACTTACACAATAT
AAAACTCTTTTAATTTTATATAGATTTAAGAC
Found at i:238616 original size:19 final size:19
Alignment explanation
Indices: 238566--238620 Score: 60
Period size: 18 Copynumber: 2.9 Consensus size: 19
238556 AATAAAAAAT
238566 ATTTAAAATTATAA-TA-AA
1 ATTTAAAA-TATAATTATAA
* *
238584 AATTACAATCATAATTATAA
1 ATTTAAAAT-ATAATTATAA
238604 ATTTAAAATATAATTAT
1 ATTTAAAATATAATTAT
238621 GATATTTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
17 1 0.03
18 10 0.33
19 10 0.33
20 9 0.30
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (19 bp):
ATTTAAAATATAATTATAA
Found at i:242370 original size:3 final size:3
Alignment explanation
Indices: 242362--242405 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
242352 ATTAAGATTT
242362 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
242406 TATTATTATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:242410 original size:3 final size:3
Alignment explanation
Indices: 242404--242434 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
242394 AATAATAATA
242404 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
242435 AACATATGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:255789 original size:228 final size:227
Alignment explanation
Indices: 255393--255880 Score: 886
Period size: 228 Copynumber: 2.1 Consensus size: 227
255383 GTTATATTGT
* * *
255393 AAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAATATATTTATTATTA
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTA
255458 TCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAAT
66 TCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAAT
* *
255523 AATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAA
131 AATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAAGTGAAAAACATGAAACACTATTAAA
255588 AAAATTGAAACATAAATTACATAACTTTAAAA
196 AAAATTGAAACATAAATTACATAACTTTAAAA
255620 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGT-GAAAACATATTTATTATT
* *
255685 ATCTTTGGTTAATATTGTTAAATTTAAATTTTAAATAATATTTTATAAAATATCAAATAATCAAA
65 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAA
* *
255750 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAAGTGAAAAACATGAAATACTATTAA
130 TAATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAAGTGAAAAACATGAAACACTATTAA
255815 AAAAATTGAAACATAAATTACATAACTTTAAAA
195 AAAAATTGAAACATAAATTACATAACTTTAAAA
255848 AAAGTATATATCATTTTTATAAAAGTGTCCATA
1 AAAGTATATATCATTTTTATAAAAGTGTCCATA
255881 TGTATAAAAG
Statistics
Matches: 251, Mismatches: 9, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
227 44 0.18
228 207 0.82
ACGTcount: A:0.45, C:0.07, G:0.08, T:0.40
Consensus pattern (227 bp):
AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTA
TCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAAT
AATTTTGTGTGTAAATGAAATTATTAAATTAATATTGTAAGTGAAAAACATGAAACACTATTAAA
AAAATTGAAACATAAATTACATAACTTTAAAA
Found at i:255950 original size:21 final size:20
Alignment explanation
Indices: 255926--255976 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 20
255916 AAAACGATAT
255926 ACCAGGTAAAAATATGATAAA
1 ACCAGGTAAAAA-ATGATAAA
255947 ACCA-GTAACAAAATGATAAA
1 ACCAGGTAA-AAAATGATAAA
255967 ACC-GGTAAAA
1 ACCAGGTAAAA
255977 CGTTACCGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
19 2 0.07
20 19 0.68
21 7 0.25
ACGTcount: A:0.57, C:0.14, G:0.14, T:0.16
Consensus pattern (20 bp):
ACCAGGTAAAAAATGATAAA
Found at i:256159 original size:17 final size:19
Alignment explanation
Indices: 256120--256162 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
256110 ATGTAAAAAT
256120 ATGATAAAACCGGTATCAAA
1 ATGATAAAACCGG-ATCAAA
256140 ATGATAAAACCGG-T-AAA
1 ATGATAAAACCGGATCAAA
256157 ATGATA
1 ATGATA
256163 CCGGATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.39
18 1 0.04
20 13 0.57
ACGTcount: A:0.51, C:0.12, G:0.16, T:0.21
Consensus pattern (19 bp):
ATGATAAAACCGGATCAAA
Found at i:258402 original size:21 final size:21
Alignment explanation
Indices: 258378--258421 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
258368 AAGACAATCA
258378 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
258399 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
258420 AG
1 AG
258422 GCATAAGGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.41, C:0.11, G:0.32, T:0.16
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:258497 original size:33 final size:33
Alignment explanation
Indices: 258455--258520 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
258445 AAATAGATGG
*
258455 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
258488 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
258521 TATTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:260336 original size:19 final size:19
Alignment explanation
Indices: 260312--260360 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
260302 AATGTAGGGT
260312 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
260331 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
*
260350 TATTTTTGTAT
1 TAATTTTGTAT
260361 GTGAATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.57
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:261234 original size:399 final size:399
Alignment explanation
Indices: 260695--261830 Score: 2053
Period size: 399 Copynumber: 2.8 Consensus size: 399
260685 GTGCAACCAT
* *
260695 AAAGTGTCGATCCCAAAAACATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAA
1 AAAGTGTCGATCCCAAAATCATCG-AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAA
*
260760 CCTGTACAAGTTTACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAATTTAGTT
65 CCAGTACAAGTTTACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAATTTAGTT
* *
260825 TGTGTCGATATTTTTGTTCCATAATGAATGGAAAACATGGTGCACCCATAAAGTGTCGATCCATA
130 TGTGTCGATATTTTTGTTCCAGAATGAATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATA
* *
260890 TATAAAAAGTGTCGATCCCAAAAACATTGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAA
195 TATAAAAAGTGTCGATCCCAAAATCATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAA
260955 TCTAACCGGTACAAGTTTACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAATT
260 TCTAACCGGTACAAGTTTACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAATT
261020 TAGTTTGTGTCGATATTTTTGTTCCAGAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGAT
325 TAGTTTGTGTCGATATTTTTGTTCCAGAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGAT
261085 CCATATATAA
390 CCATATATAA
261095 AAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAAC
1 AAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAAC
*
261160 CGGTACAAGTTTACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAATTTAGTTT
66 CAGTACAAGTTTACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAATTTAGTTT
261225 GTGTCGATATTTTTGTTCCAGAATGAATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATAT
131 GTGTCGATATTTTTGTTCCAGAATGAATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATAT
261290 ATAAAAAGTGTCGATCCCAAAATCATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAAT
196 ATAAAAAGTGTCGATCCCAAAATCATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAAT
* *
261355 CTAACCAGTACACGTTTACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAATTT
261 CTAACCGGTACAAGTTTACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAATTT
*
261420 AGTTTGTGTCGATATTTTTGTTCCATAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATC
326 AGTTTGTGTCGATATTTTTGTTCCAGAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATC
261485 CATATATAA
391 CATATATAA
*
261494 AAAGTATCGATCCCAAAATCATCGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAAC
1 AAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAAC
* *
261559 CAGTACAAGTTTACCGATTTTATGAGAGAATATGTCTAAATAATGTGTTGACACTAATTTAGTTT
66 CAGTACAAGTTTACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAATTTAGTTT
* * *
261624 GTGTCGATATTTTTATTCCAGAATGAATGGAAAACAGGGTGCAACCATAAAGTATCGATCCATAT
131 GTGTCGATATTTTTGTTCCAGAATGAATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATAT
*
261689 ATAAAAAGTGTCGATCCCAAAATCATCG-AACCCAAAAGTATAATGTAATATGTAATTTTTCAAT
196 ATAAAAAGTGTCGATCCCAAAATCATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAAT
* *
261753 CTAACTGGTACAAGTATACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACGT--TT
261 CTAACCGGTACAAGTTTACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACAC-TAATT
261816 TAGTTTGTGTCGATA
325 TAGTTTGTGTCGATA
261831 CTAATTTAAA
Statistics
Matches: 713, Mismatches: 22, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
397 17 0.02
398 90 0.13
399 583 0.82
400 23 0.03
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (399 bp):
AAAGTGTCGATCCCAAAATCATCGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAAC
CAGTACAAGTTTACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAATTTAGTTT
GTGTCGATATTTTTGTTCCAGAATGAATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATAT
ATAAAAAGTGTCGATCCCAAAATCATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAAT
CTAACCGGTACAAGTTTACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAATTT
AGTTTGTGTCGATATTTTTGTTCCAGAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATC
CATATATAA
Found at i:261245 original size:199 final size:200
Alignment explanation
Indices: 260695--261830 Score: 2030
Period size: 199 Copynumber: 5.7 Consensus size: 200
260685 GTGCAACCAT
*
260695 AAAGTGTCGATCCCAAAAACATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAA
1 AAAGTGTCGATCCCAAAATCATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAA
*
260760 CCTGTACAAGTTTACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAATTTAGTT
66 CCGGTACAAGTTTACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAATTTAGTT
* * *
260825 TGTGTCGATATTTTTGTTCCATAATGAATGGAAAACATGGTGCACCCATAAAGTGTCGATCCATA
131 TGTGTCGATATTTTTGTTCCAGAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATA
260890 TATAA
196 TATAA
* *
260895 AAAGTGTCGATCCCAAAAACATTGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAA
1 AAAGTGTCGATCCCAAAATCATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAA
260960 CCGGTACAAGTTTACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAATTTAGTT
66 CCGGTACAAGTTTACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAATTTAGTT
261025 TGTGTCGATATTTTTGTTCCAGAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATA
131 TGTGTCGATATTTTTGTTCCAGAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATA
261090 TATAA
196 TATAA
*
261095 AAAGTGTCGATCCCAAAATCATCG-AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAA
1 AAAGTGTCGATCCCAAAATCATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAA
261159 CCGGTACAAGTTTACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAATTTAGTT
66 CCGGTACAAGTTTACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAATTTAGTT
*
261224 TGTGTCGATATTTTTGTTCCAGAATGAATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATA
131 TGTGTCGATATTTTTGTTCCAGAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATA
261289 TATAA
196 TATAA
261294 AAAGTGTCGATCCCAAAATCATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAA
1 AAAGTGTCGATCCCAAAATCATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAA
* *
261359 CCAGTACACGTTTACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAATTTAGTT
66 CCGGTACAAGTTTACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAATTTAGTT
*
261424 TGTGTCGATATTTTTGTTCCATAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATA
131 TGTGTCGATATTTTTGTTCCAGAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATA
261489 TATAA
196 TATAA
* *
261494 AAAGTATCGATCCCAAAATCATCG-AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAA
1 AAAGTGTCGATCCCAAAATCATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAA
* * *
261558 CCAGTACAAGTTTACCGATTTTATGAGAGAATATGTCTAAATAATGTGTTGACACTAATTTAGTT
66 CCGGTACAAGTTTACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAATTTAGTT
* *
261623 TGTGTCGATATTTTTATTCCAGAATGAATGGAAAACAGGGTGCAACCATAAAGTATCGATCCATA
131 TGTGTCGATATTTTTGTTCCAGAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATA
261688 TATAA
196 TATAA
*
261693 AAAGTGTCGATCCCAAAATCATCG-AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAA
1 AAAGTGTCGATCCCAAAATCATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAA
* *
261757 CTGGTACAAGTATACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACGT--TTTAGT
66 CCGGTACAAGTTTACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACAC-TAATTTAGT
261820 TTGTGTCGATA
130 TTGTGTCGATA
261831 CTAATTTAAA
Statistics
Matches: 906, Mismatches: 28, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
198 17 0.02
199 478 0.53
200 411 0.45
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (200 bp):
AAAGTGTCGATCCCAAAATCATCGAAAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAA
CCGGTACAAGTTTACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTAATTTAGTT
TGTGTCGATATTTTTGTTCCAGAATGAATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATA
TATAA
Found at i:263124 original size:25 final size:25
Alignment explanation
Indices: 263096--263160 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
263086 TTATCATTAA
263096 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
****
263121 ATTTAGGTATGTTTGTTAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
*
263146 ATTTAGGTATATACA
1 ATTTAGGTATGTACA
263161 TCTTTTGAGT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (25 bp):
ATTTAGGTATGTACAATAACTACAT
Found at i:263538 original size:23 final size:23
Alignment explanation
Indices: 263507--263579 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
263497 ATAGGTAAAC
*
263507 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
263530 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
263553 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
263576 ATAT
1 ATAT
263580 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:264028 original size:18 final size:18
Alignment explanation
Indices: 264007--264043 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
263997 GTAATTGGAG
264007 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
264025 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
264043 T
1 T
264044 ATATATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:264051 original size:24 final size:24
Alignment explanation
Indices: 263999--264045 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
263989 TTTCATATGT
* *
263999 AATTGGAGTTTGAATTTAAATTTC
1 AATTTGAGTTTGAATTTAAATATC
*
264023 AATTTGAGTTTGAATTTCAATAT
1 AATTTGAGTTTGAATTTAAATAT
264046 ATATTTCGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTAAATATC
Found at i:264346 original size:39 final size:39
Alignment explanation
Indices: 264303--264389 Score: 147
Period size: 39 Copynumber: 2.2 Consensus size: 39
264293 TCCGATGCTC
*
264303 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
* *
264342 ATCAAAATTCAAATCTCATATGATGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
264381 ATCAAAATC
1 ATCAAAATC
264390 TACAACTTGA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.48, C:0.20, G:0.14, T:0.18
Consensus pattern (39 bp):
ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
Found at i:268394 original size:29 final size:29
Alignment explanation
Indices: 268337--268394 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
268327 GTGTTGGCCG
* *
268337 TAGGTCGCAATGCCTTCCGGGCGACCTAC
1 TAGGTCGCAATGCCTTCCCGACGACCTAC
* * *
268366 TAGGTCGCCATGTCTTCCCGACGAGCTAC
1 TAGGTCGCAATGCCTTCCCGACGACCTAC
268395 AAGAGATTGC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.17, C:0.34, G:0.26, T:0.22
Consensus pattern (29 bp):
TAGGTCGCAATGCCTTCCCGACGACCTAC
Found at i:268462 original size:24 final size:23
Alignment explanation
Indices: 268434--268517 Score: 95
Period size: 24 Copynumber: 3.7 Consensus size: 23
268424 ACACGCTGGG
*
268434 CATCCGATGCCATCCGACCGAGGC
1 CATCCGAGGCCATCCGACCGA-GC
268458 CATCCGAGGCCATCCGA--GAG-
1 CATCCGAGGCCATCCGACCGAGC
268478 CATCCGAGGCCATCCGACCGAGC
1 CATCCGAGGCCATCCGACCGAGC
* *
268501 TATGCGATGG-CATCCGA
1 CATCCGA-GGCCATCCGA
268518 GGGCAACCGA
Statistics
Matches: 53, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
20 17 0.32
21 1 0.02
22 5 0.09
23 12 0.23
24 18 0.34
ACGTcount: A:0.23, C:0.37, G:0.27, T:0.13
Consensus pattern (23 bp):
CATCCGAGGCCATCCGACCGAGC
Found at i:268464 original size:10 final size:10
Alignment explanation
Indices: 268451--268494 Score: 72
Period size: 10 Copynumber: 4.4 Consensus size: 10
268441 TGCCATCCGA
268451 CCGAGGCCAT
1 CCGAGGCCAT
268461 CCGAGGCCAT
1 CCGAGGCCAT
268471 CCGAGAG-CAT
1 CCGAG-GCCAT
268481 CCGAGGCCAT
1 CCGAGGCCAT
268491 CCGA
1 CCGA
268495 CCGAGCTATG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
9 1 0.03
10 30 0.94
11 1 0.03
ACGTcount: A:0.23, C:0.39, G:0.30, T:0.09
Consensus pattern (10 bp):
CCGAGGCCAT
Found at i:268481 original size:20 final size:22
Alignment explanation
Indices: 268432--268495 Score: 87
Period size: 20 Copynumber: 2.9 Consensus size: 22
268422 CAACACGCTG
*
268432 GGCATCCGATGCCATCCGACCGA
1 GGCATCCGAGGCCATCCGA-CGA
268455 GGCCATCCGAGGCCATCCGA-GA
1 GG-CATCCGAGGCCATCCGACGA
268477 -GCATCCGAGGCCATCCGAC
1 GGCATCCGAGGCCATCCGAC
268496 CGAGCTATGC
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
20 17 0.45
21 1 0.03
22 2 0.05
23 2 0.05
24 16 0.42
ACGTcount: A:0.22, C:0.39, G:0.28, T:0.11
Consensus pattern (22 bp):
GGCATCCGAGGCCATCCGACGA
Found at i:268553 original size:33 final size:33
Alignment explanation
Indices: 268479--268565 Score: 113
Period size: 33 Copynumber: 2.6 Consensus size: 33
268469 ATCCGAGAGC
* * * * *
268479 ATCCGAGGCCATCCGACCGAGCTATGCGATGGC
1 ATCCGAGGGCAACCGAGCGAGCTATGCGAGGGA
268512 ATCCGAGGGCAACCGAGCGAGCTATGCGAGGGA
1 ATCCGAGGGCAACCGAGCGAGCTATGCGAGGGA
268545 ATCCGAGGG-AAGCCGAGCGAG
1 ATCCGAGGGCAA-CCGAGCGAG
268566 GGTAGGTCGC
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
32 2 0.04
33 46 0.96
ACGTcount: A:0.25, C:0.28, G:0.37, T:0.10
Consensus pattern (33 bp):
ATCCGAGGGCAACCGAGCGAGCTATGCGAGGGA
Found at i:272424 original size:24 final size:23
Alignment explanation
Indices: 272392--272449 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 23
272382 CTATGTGAGA
272392 ACATCCGAGGTCATCCGACCGAGG
1 ACATCCGAGG-CATCCGACCGAGG
272416 ACATCCGAGCGCATCCGACCGAGG
1 ACATCCGAG-GCATCCGACCGAGG
*
272440 CCATCCGAGG
1 ACATCCGAGG
272450 GGTAGGTCGC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
23 1 0.03
24 30 0.94
25 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.29, T:0.10
Consensus pattern (23 bp):
ACATCCGAGGCATCCGACCGAGG
Found at i:278716 original size:15 final size:15
Alignment explanation
Indices: 278696--278725 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
278686 TCGTAAAATG
278696 GTTAACGACGTTAAA
1 GTTAACGACGTTAAA
*
278711 GTTAACGATGTTAAA
1 GTTAACGACGTTAAA
278726 ATGGACAGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.20, T:0.30
Consensus pattern (15 bp):
GTTAACGACGTTAAA
Found at i:298252 original size:24 final size:24
Alignment explanation
Indices: 298220--298270 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
298210 ACCAAAAGGC
*
298220 AGAAAAAAAATGCCACAAAGGCAG
1 AGAAAAAAAATGCCACAAAGACAG
* *
298244 AGAAAAAAAATGTCATAAAGACAG
1 AGAAAAAAAATGCCACAAAGACAG
298268 AGA
1 AGA
298271 CAAACGTGTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.61, C:0.12, G:0.20, T:0.08
Consensus pattern (24 bp):
AGAAAAAAAATGCCACAAAGACAG
Found at i:299204 original size:154 final size:160
Alignment explanation
Indices: 299026--299344 Score: 580
Period size: 154 Copynumber: 2.0 Consensus size: 160
299016 GAGTTAAAAT
*
299026 AGATATAAAAATATGTACTTAATTAAAAATTAATAAATAAGAATCCTTTAAATAATTTCAATGAT
1 AGATATAAAAATATGTACTTAATTAAAAATAAATAAATAAGAATCCTTTAAATAATTTCAATGAT
299091 AAAAAAT-A-ATTATTTTTCTT-AAAAAATTAGATGTGTTT-TAGATTTAAATAAGGAGTCATTA
66 AAAAAATAATATTATTTTTCTTAAAAAAATTAGATGTGTTTATAGATTTAAATAAGGAGTCATTA
299152 TGAG-ATAATAGCTATCGTATAATGATATC
131 TGAGAATAATAGCTATCGTATAATGATATC
299181 AGATAT-AAAATATGTACTTAATTAAAAATAAATAAATAAGAATCCTTTAAATAATTTCAATGAT
1 AGATATAAAAATATGTACTTAATTAAAAATAAATAAATAAGAATCCTTTAAATAATTTCAATGAT
299245 AAAAAATAATATTATTTTTCTTAAAAAAATTAGATGTGTTTATAGATTTAAATAAGGAGTCATTA
66 AAAAAATAATATTATTTTTCTTAAAAAAATTAGATGTGTTTATAGATTTAAATAAGGAGTCATTA
299310 TGAGAATAATAGCTATCGTATAATGATATC
131 TGAGAATAATAGCTATCGTATAATGATATC
299340 A-ATAT
1 AGATAT
299345 CGTTAGAAAC
Statistics
Matches: 158, Mismatches: 1, Indels: 7
0.95 0.01 0.04
Matches are distributed among these distances:
154 64 0.41
155 7 0.04
156 12 0.08
157 18 0.11
158 31 0.20
159 26 0.16
ACGTcount: A:0.47, C:0.06, G:0.10, T:0.37
Consensus pattern (160 bp):
AGATATAAAAATATGTACTTAATTAAAAATAAATAAATAAGAATCCTTTAAATAATTTCAATGAT
AAAAAATAATATTATTTTTCTTAAAAAAATTAGATGTGTTTATAGATTTAAATAAGGAGTCATTA
TGAGAATAATAGCTATCGTATAATGATATC
Found at i:299455 original size:2 final size:2
Alignment explanation
Indices: 299448--299476 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
299438 TAAAATAATT
299448 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
299477 TAAAAAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:300080 original size:6 final size:6
Alignment explanation
Indices: 300069--300117 Score: 80
Period size: 6 Copynumber: 8.2 Consensus size: 6
300059 CACCACCCAT
* *
300069 CAGCAA CAGCAA CAGCAA CAGCAA CAGCAA CAACAA CAACAA CAGCAA
1 CAGCAA CAGCAA CAGCAA CAGCAA CAGCAA CAGCAA CAGCAA CAGCAA
300117 C
1 C
300118 CTTTGGTTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.53, C:0.35, G:0.12, T:0.00
Consensus pattern (6 bp):
CAGCAA
Found at i:301300 original size:2 final size:2
Alignment explanation
Indices: 301293--301323 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
301283 GGGGATCTTT
*
301293 TA TA TA TA TA TA TA TA TG TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
301324 GTATGTATGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:301340 original size:16 final size:16
Alignment explanation
Indices: 301307--301354 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
301297 TATATATATA
*
301307 TATGTATATATATA--
1 TATGTATGTATATACG
*
301321 TATGTATGTATGTACG
1 TATGTATGTATATACG
301337 TATGTATGTATATACG
1 TATGTATGTATATACG
301353 TA
1 TA
301355 CGTACGTACG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 12 0.41
16 17 0.59
ACGTcount: A:0.33, C:0.04, G:0.17, T:0.46
Consensus pattern (16 bp):
TATGTATGTATATACG
Found at i:302508 original size:2 final size:2
Alignment explanation
Indices: 302496--302549 Score: 94
Period size: 2 Copynumber: 28.0 Consensus size: 2
302486 AATGGGTAGG
302496 AT AT A- AT AT AT AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
302536 AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT
302550 TCGAATTCGA
Statistics
Matches: 50, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
1 2 0.04
2 48 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:305898 original size:39 final size:39
Alignment explanation
Indices: 305844--305966 Score: 210
Period size: 39 Copynumber: 3.2 Consensus size: 39
305834 TTGCATACTC
* * * *
305844 TTCTGCAGCACGTTTGTAACATCCAGCACGAACAAAATA
1 TTCTGCCGCACGTTTGTAACTTCCAGCAAGAACAAAACA
305883 TTCTGCCGCACGTTTGTAACTTCCAGCAAGAACAAAACA
1 TTCTGCCGCACGTTTGTAACTTCCAGCAAGAACAAAACA
305922 TTCTGCCGCACGTTTGTAACTTCCAGCAAGAACAAAACA
1 TTCTGCCGCACGTTTGTAACTTCCAGCAAGAACAAAACA
305961 TTCTGC
1 TTCTGC
305967 TGCTCTCTCC
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (39 bp):
TTCTGCCGCACGTTTGTAACTTCCAGCAAGAACAAAACA
Found at i:314049 original size:104 final size:106
Alignment explanation
Indices: 313866--314078 Score: 403
Period size: 104 Copynumber: 2.0 Consensus size: 106
313856 TATACGGCTC
313866 CTTCTCGTGATCACTGAACCTGTTTCTCCAGTAATCAACCTCCACATTAAACAACAATGCTCCAT
1 CTTCTCGTGATCACTGAACCTGTTTCTCCA-TAATCAACCTCCACATTAAACAACAATGCTCCAT
313931 TTGGTTTCACATCATTAAGATATGTCACTTCGGCATATGGTG
65 TTGGTTTCACATCATTAAGATATGTCACTTCGGCATATGGTG
313973 CTTCTCGTGATCACTGAACCTGTTTCTCC-T-ATCAACCTCCACATTAAACAACAATGCTCCATT
1 CTTCTCGTGATCACTGAACCTGTTTCTCCATAATCAACCTCCACATTAAACAACAATGCTCCATT
314036 TGGTTTCACATCATTAAGATATGTCACTTCGGCATATGGTG
66 TGGTTTCACATCATTAAGATATGTCACTTCGGCATATGGTG
314077 CT
1 CT
314079 CTATCAATAA
Statistics
Matches: 106, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
104 76 0.72
105 1 0.01
107 29 0.27
ACGTcount: A:0.26, C:0.27, G:0.14, T:0.33
Consensus pattern (106 bp):
CTTCTCGTGATCACTGAACCTGTTTCTCCATAATCAACCTCCACATTAAACAACAATGCTCCATT
TGGTTTCACATCATTAAGATATGTCACTTCGGCATATGGTG
Found at i:315291 original size:14 final size:14
Alignment explanation
Indices: 315272--315298 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
315262 CTAGAAGATC
315272 CAATCAACAACTTT
1 CAATCAACAACTTT
315286 CAATCAACAACTT
1 CAATCAACAACTT
315299 CTAGAAGGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.30, G:0.00, T:0.26
Consensus pattern (14 bp):
CAATCAACAACTTT
Found at i:315519 original size:15 final size:15
Alignment explanation
Indices: 315499--315532 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
315489 CCTTCTCTCT
315499 TTTTCTTTACTTTCA
1 TTTTCTTTACTTTCA
* *
315514 TTTTCTTTATTTTTA
1 TTTTCTTTACTTTCA
315529 TTTT
1 TTTT
315533 AAAGCTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTCTTTACTTTCA
Found at i:331731 original size:631 final size:631
Alignment explanation
Indices: 330504--331766 Score: 2014
Period size: 631 Copynumber: 2.0 Consensus size: 631
330494 AATTTGAAAT
* * *
330504 TAACAAAGGTAGTACCGATACCCCCATATTAAAGTATCGATACTTCATATATTAGGCAACCTTAT
1 TAACAAAGGTAGTACCGATACACCCATATTAAAGTACCAATACTTCATATATTAGGCAACCTTAT
* * *
330569 TTTATAGAAAATAAATCCCCAAGGCTCTAAAACATCCCAACGGCTAGATACGACTTCAAACTCAT
66 TTTACAGAAAATAAATCCACAAGGCTCCAAAACATCCCAACGGCTAGATACGACTTCAAACTCAT
*
330634 TCCAACCTATAAATACAAGTTCAAGACATTTGAAGAAGGTAGAGAACACCTATCCAAGCAATCAA
131 TCCAACCTATAAATACAAGTTCAAGACACTTGAAGAAGGTAGAGAACACCTATCCAAGCAATCAA
*
330699 ACACAAGAGAAGAGTTTTTCATTCTTAGTTTTCCATTCTCTTGTAAATATTTTGTTCTTGTGAGC
196 ACACAAGAGAAGAG-TTTTCATTCTTAGTTTTCCATTCTCATGTAAATATTTTGTTCTTGTGAGC
* * *
330764 TTAATTCTTGTAAACACCTATCTTAGAAAGGTTTATTTGTTTACTTCTTTTTATCCTTTTGTAAA
260 TTAATTCTTGTAAACACATACCCTAGAAAGGTTTATTTGTTTACTTCTTTTTATCCTTTTGTAAA
* * *
330829 AGGGTTGGTTTTATCTTAGCCAAGTGAAAATATAGGGATTGGTTCTAGCTGAGCACGTCAAAAGC
325 AGGGTTGATTCTATCTTAGCCAAGTGAAAAGATAGGGATTGGTTCTAGCTGAGCACGTCAAAAGC
* *
330894 TAGGGAGTTGTAAAGGTTACTCTTTGTCCTAAAAAATAAAGAACAAATTAGTGAATTTGTTAGAA
390 TAGGGAGTTGTAAAGGTTACTCTTTGTCCTAAAAAAGAAAGAACAAATTAGTGAATTTGTTAAAA
* * *
330959 AATCCTTGGTGATGAGCTAAGGTAGTGGATGCAGACTTGGTTGAGAAGTCGAACTACTATAAATC
455 AATCCTTGGTGAGGAGCTAAAGTAGTGGATGCAGACTTGGTTGAGAAGTCGAACCACTATAAATC
* * *
331024 GCTGTACAAATTTTCTATCTTTCAATCTCTTTACTCCCTAAACACAAAAATTGATTCAACCCCTC
520 GATGTACAAATTTTCTATCTTTCAATCTCCTTACTCCCTAAACACAAAAACTGATTCAACCCCTC
* *
331089 TTGCAAAACTCTTTCGGTTGTCGATTCGAGC-TTCTGCAAATCCCAAC
585 TTGCAAAACTCTTTCGGTTGTCGATTCAAGCATAC-GCAAATCCCAAC
** *
331136 TAACAAAGGTAGTACCGATA-ACCCATATTGGAGTACCAATACTTCATGTATTAGGCAACCTTAT
1 TAACAAAGGTAGTACCGATACACCCATATTAAAGTACCAATACTTCATATATTAGGCAACCTTAT
* * * * * * *
331200 TTTGCAGAAAATGAATCCACAACGGCTCCAAAATATCCCCAACGGCTATATATGACTTCAAATTT
66 TTTACAGAAAATAAATCCACAA-GGCTCCAAAACAT-CCCAACGGCTAGATACGACTTCAAACTC
*
331265 ATTCCAACCTATAAATACAAGTTCAAGACACTTGAAGAAGGTAGAGAACACCTATTCAAGCAATC
129 ATTCCAACCTATAAATACAAGTTCAAGACACTTGAAGAAGGTAGAGAACACCTATCCAAGCAATC
* *
331330 AAACACAAGATAAGAG-TTTCATTCTTAGTTTTCTATTCTCATGTAAATATTTTGTTCTTGTGAG
194 AAACACAAGAGAAGAGTTTTCATTCTTAGTTTTCCATTCTCATGTAAATATTTTGTTCTTGTGAG
*
331394 CTTAATTCTTGTAAACACATACCCTAGAGAGGTTTATTTGTTTACTTCTTTTTATCCTTTTGTAA
259 CTTAATTCTTGTAAACACATACCCTAGAAAGGTTTATTTGTTTACTTCTTTTTATCCTTTTGTAA
*
331459 AATGGTTGATTCTATCTTAGCCAAGTGAAAAGATAGGGATTGGTTCTAGCTGAGC-CTGTCAAAA
324 AAGGGTTGATTCTATCTTAGCCAAGTGAAAAGATAGGGATTGGTTCTAGCTGAGCAC-GTCAAAA
*
331523 GCTAGGGAGTTGTAAAGGTTACTCTTTGTCCTCAAAAAGAAAGAACAAATTAGTGAATTTGTTAA
388 GCTAGGGAGTTGTAAAGGTTACTCTTTGTCCTAAAAAAGAAAGAACAAATTAGTGAATTTGTTAA
* *
331588 AAAATCCTTGGTGAGGAGCTAAAGTAGTGGATGTAGACTTGGTTGAGAAGTTGAACCACTATAAA
453 AAAATCCTTGGTGAGGAGCTAAAGTAGTGGATGCAGACTTGGTTGAGAAGTCGAACCACTATAAA
* * *
331653 TCGATGTGCAAATTTTCTATCTTTCAATCTCCTTACTTCCTCAACACAAAAACTGATTCAACCCC
518 TCGATGTACAAATTTTCTATCTTTCAATCTCCTTACTCCCTAAACACAAAAACTGATTCAACCCC
* *
331718 TCTTGGC-AAACTCTTTTGGTTGTTGATTCAAGCATACGCAAATCCCAAC
583 TCTT-GCAAAACTCTTTCGGTTGTCGATTCAAGCATACGCAAATCCCAAC
331767 ACAGGATTTG
Statistics
Matches: 579, Mismatches: 47, Indels: 11
0.91 0.07 0.02
Matches are distributed among these distances:
630 1 0.00
631 441 0.76
632 35 0.06
633 102 0.18
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (631 bp):
TAACAAAGGTAGTACCGATACACCCATATTAAAGTACCAATACTTCATATATTAGGCAACCTTAT
TTTACAGAAAATAAATCCACAAGGCTCCAAAACATCCCAACGGCTAGATACGACTTCAAACTCAT
TCCAACCTATAAATACAAGTTCAAGACACTTGAAGAAGGTAGAGAACACCTATCCAAGCAATCAA
ACACAAGAGAAGAGTTTTCATTCTTAGTTTTCCATTCTCATGTAAATATTTTGTTCTTGTGAGCT
TAATTCTTGTAAACACATACCCTAGAAAGGTTTATTTGTTTACTTCTTTTTATCCTTTTGTAAAA
GGGTTGATTCTATCTTAGCCAAGTGAAAAGATAGGGATTGGTTCTAGCTGAGCACGTCAAAAGCT
AGGGAGTTGTAAAGGTTACTCTTTGTCCTAAAAAAGAAAGAACAAATTAGTGAATTTGTTAAAAA
ATCCTTGGTGAGGAGCTAAAGTAGTGGATGCAGACTTGGTTGAGAAGTCGAACCACTATAAATCG
ATGTACAAATTTTCTATCTTTCAATCTCCTTACTCCCTAAACACAAAAACTGATTCAACCCCTCT
TGCAAAACTCTTTCGGTTGTCGATTCAAGCATACGCAAATCCCAAC
Found at i:334842 original size:29 final size:29
Alignment explanation
Indices: 334808--334866 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
334798 CCTAAATTAA
334808 TTTGATGTCATTGCTTACATCAATTTAGT
1 TTTGATGTCATTGCTTACATCAATTTAGT
334837 TTTGATGTCATTGCTTACATCAATTTAGT
1 TTTGATGTCATTGCTTACATCAATTTAGT
334866 T
1 T
334867 AGGTGAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.24, C:0.14, G:0.14, T:0.49
Consensus pattern (29 bp):
TTTGATGTCATTGCTTACATCAATTTAGT
Found at i:339456 original size:29 final size:29
Alignment explanation
Indices: 339422--339480 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
339412 CCTAAATTAA
339422 TTTGATGTCATTACTTACATCAATTTAGT
1 TTTGATGTCATTACTTACATCAATTTAGT
*
339451 TTTGATGTCATTGCTTACATCAATTTAGT
1 TTTGATGTCATTACTTACATCAATTTAGT
339480 T
1 T
339481 AGGTGAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.25, C:0.14, G:0.12, T:0.49
Consensus pattern (29 bp):
TTTGATGTCATTACTTACATCAATTTAGT
Found at i:347628 original size:14 final size:14
Alignment explanation
Indices: 347606--347639 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
347596 CGTTGGGCAT
*
347606 CCGAAGGCATCCGA
1 CCGAGGGCATCCGA
347620 CCGAGGGCATCCGA
1 CCGAGGGCATCCGA
347634 CCGAGG
1 CCGAGG
347640 CCATTCGAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.24, C:0.35, G:0.35, T:0.06
Consensus pattern (14 bp):
CCGAGGGCATCCGA
Found at i:347652 original size:14 final size:14
Alignment explanation
Indices: 347613--347643 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
347603 CATCCGAAGG
*
347613 CATCCGACCGAGGG
1 CATCCGACCGAGGC
347627 CATCCGACCGAGGC
1 CATCCGACCGAGGC
347641 CAT
1 CAT
347644 TCGAGCGAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.23, C:0.39, G:0.29, T:0.10
Consensus pattern (14 bp):
CATCCGACCGAGGC
Found at i:347740 original size:29 final size:29
Alignment explanation
Indices: 347699--347804 Score: 203
Period size: 29 Copynumber: 3.7 Consensus size: 29
347689 GAGGAGCAGG
347699 AGGAGTGCATGGCGACCTACAAGGTCGCC
1 AGGAGTGCATGGCGACCTACAAGGTCGCC
347728 AGGAGTGCATGGCGACCTACAAGGTCGCC
1 AGGAGTGCATGGCGACCTACAAGGTCGCC
347757 AGGAGTGCATGGCGACCTACAAGGTCGCC
1 AGGAGTGCATGGCGACCTACAAGGTCGCC
*
347786 CGGAGTGCATGGCGACCTA
1 AGGAGTGCATGGCGACCTA
347805 TGCTGGGAAG
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 76 1.00
ACGTcount: A:0.24, C:0.27, G:0.35, T:0.14
Consensus pattern (29 bp):
AGGAGTGCATGGCGACCTACAAGGTCGCC
Found at i:352876 original size:23 final size:25
Alignment explanation
Indices: 352817--352876 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 25
352807 TTTAGTATTT
*
352817 AAATTATCATTTTTAGTCTGTTTTTA
1 AAATTAT-ATTTTTAATCTGTTTTTA
* * *
352843 TATTTAAATTTTTAAT-T-TTTTTA
1 AAATTATATTTTTAATCTGTTTTTA
352866 AAATTATATTT
1 AAATTATATTT
352877 AAAATTTAAT
Statistics
Matches: 27, Mismatches: 7, Indels: 3
0.73 0.19 0.08
Matches are distributed among these distances:
23 14 0.52
24 1 0.04
25 8 0.30
26 4 0.15
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (25 bp):
AAATTATATTTTTAATCTGTTTTTA
Found at i:355990 original size:12 final size:12
Alignment explanation
Indices: 355973--356001 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
355963 GAAAGTCAAC
355973 GGTCAACGGTCG
1 GGTCAACGGTCG
355985 GGTCAACGGTCG
1 GGTCAACGGTCG
355997 GGTCA
1 GGTCA
356002 GTCGGGTCGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.24, G:0.41, T:0.17
Consensus pattern (12 bp):
GGTCAACGGTCG
Found at i:356022 original size:19 final size:19
Alignment explanation
Indices: 355994--356030 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
355984 GGGTCAACGG
*
355994 TCGGGTCAGTCGGGTCGGA
1 TCGGGCCAGTCGGGTCGGA
356013 TCGGGCCAGTCGGGTCGG
1 TCGGGCCAGTCGGGTCGG
356031 GTCTGACCGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.08, C:0.24, G:0.49, T:0.19
Consensus pattern (19 bp):
TCGGGCCAGTCGGGTCGGA
Found at i:363231 original size:13 final size:14
Alignment explanation
Indices: 363213--363241 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
363203 GTCAAAGAAA
363213 GTCAACGGTC-ACG
1 GTCAACGGTCAACG
363226 GTCAACGGTCAACG
1 GTCAACGGTCAACG
363240 GT
1 GT
363242 TGGGTCGGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.24, C:0.28, G:0.31, T:0.17
Consensus pattern (14 bp):
GTCAACGGTCAACG
Found at i:363233 original size:7 final size:7
Alignment explanation
Indices: 363213--363241 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
363203 GTCAAAGAAA
363213 GTCAACG
1 GTCAACG
363220 GTC-ACG
1 GTCAACG
363226 GTCAACG
1 GTCAACG
363233 GTCAACG
1 GTCAACG
363240 GT
1 GT
363242 TGGGTCGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
6 6 0.29
7 15 0.71
ACGTcount: A:0.24, C:0.28, G:0.31, T:0.17
Consensus pattern (7 bp):
GTCAACG
Found at i:364222 original size:24 final size:24
Alignment explanation
Indices: 364174--364227 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
364164 ATGAGCAGCG
* *
364174 TGATGGTTTTGGTGAACTGGTTGA
1 TGATGGTTCTGGTGAACTGGATGA
364198 TGATGGTTCTGGTGAA-TAGGATGA
1 TGATGGTTCTGGTGAACT-GGATGA
*
364222 TAATGG
1 TGATGG
364228 GGCTGATGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 1 0.04
24 25 0.96
ACGTcount: A:0.22, C:0.04, G:0.37, T:0.37
Consensus pattern (24 bp):
TGATGGTTCTGGTGAACTGGATGA
Found at i:373408 original size:39 final size:37
Alignment explanation
Indices: 373328--373401 Score: 94
Period size: 38 Copynumber: 1.9 Consensus size: 37
373318 ATCAAATTGG
* *
373328 AAAATATTTATATATTTTCTTTAAAAAATTTAAATTC
1 AAAAAATTTATATATTTTCTTTAAAAAATTAAAATTC
* *
373365 AAAAAATTTATATACTTTTTTTTACAAAATTGAAAAT
1 AAAAAATTTATATA-TTTTCTTTAAAAAATT-AAAAT
373402 ATAAAAAGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 13 0.42
38 14 0.45
39 4 0.13
ACGTcount: A:0.47, C:0.05, G:0.01, T:0.46
Consensus pattern (37 bp):
AAAAAATTTATATATTTTCTTTAAAAAATTAAAATTC
Found at i:374063 original size:37 final size:37
Alignment explanation
Indices: 373991--374063 Score: 96
Period size: 36 Copynumber: 2.0 Consensus size: 37
373981 TTATATTTTT
*
373991 AATTTTGTAAAAAAATTATATAAATATTATGAATTTA
1 AATTTTGTAAAAAAATTATATAAATATTATCAATTTA
*
374028 AATTTT-TAAAGAAAA-TATATAAATATTTTACAATTT
1 AATTTTGTAAA-AAAATTATATAAATATTAT-CAATTT
374064 GTAATATTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 17 0.53
37 15 0.47
ACGTcount: A:0.51, C:0.01, G:0.04, T:0.44
Consensus pattern (37 bp):
AATTTTGTAAAAAAATTATATAAATATTATCAATTTA
Found at i:374596 original size:16 final size:16
Alignment explanation
Indices: 374577--374612 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
374567 AATTAAGATG
374577 ATAACAAATAAAATTA
1 ATAACAAATAAAATTA
*
374593 ATAATAAATAAAATTA
1 ATAACAAATAAAATTA
374609 ATAA
1 ATAA
374613 ATACGAGCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (16 bp):
ATAACAAATAAAATTA
Found at i:381785 original size:6 final size:6
Alignment explanation
Indices: 381774--381808 Score: 52
Period size: 6 Copynumber: 5.5 Consensus size: 6
381764 ATTTCTCTCC
381774 CCCTCT CCCTCT CCCTCT CCCCTCT CCCCTCT CCC
1 CCCTCT CCCTCT CCCTCT -CCCTCT -CCCTCT CCC
381809 CTCTATCTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 15 0.54
7 13 0.46
ACGTcount: A:0.00, C:0.71, G:0.00, T:0.29
Consensus pattern (6 bp):
CCCTCT
Found at i:381793 original size:20 final size:20
Alignment explanation
Indices: 381768--381808 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
381758 GGTATAATTT
381768 CTCTCCCC-CTCTCCCTCTCC
1 CTCTCCCCTCTC-CCCTCTCC
381788 CTCTCCCCTCTCCCCTCTCC
1 CTCTCCCCTCTCCCCTCTCC
381808 C
1 C
381809 CTCTATCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 17 0.85
21 3 0.15
ACGTcount: A:0.00, C:0.71, G:0.00, T:0.29
Consensus pattern (20 bp):
CTCTCCCCTCTCCCCTCTCC
Found at i:381798 original size:7 final size:7
Alignment explanation
Indices: 381768--381812 Score: 67
Period size: 7 Copynumber: 6.6 Consensus size: 7
381758 GGTATAATTT
381768 CTCTCCC
1 CTCTCCC
381775 C-CTCTCC
1 CTCTC-CC
381782 CTCT-CC
1 CTCTCCC
381788 CTCTCCC
1 CTCTCCC
381795 CTCTCCC
1 CTCTCCC
381802 CTCTCCC
1 CTCTCCC
381809 CTCT
1 CTCT
381813 ATCTTTTATG
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
6 9 0.26
7 24 0.69
8 2 0.06
ACGTcount: A:0.00, C:0.69, G:0.00, T:0.31
Consensus pattern (7 bp):
CTCTCCC
Found at i:382931 original size:2 final size:2
Alignment explanation
Indices: 382924--382951 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
382914 GAATTTGCTG
382924 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
382952 GAGTTAGGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:384513 original size:15 final size:16
Alignment explanation
Indices: 384488--384517 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
384478 ATTTTTCAAT
384488 TTTATTTTATTTATTG
1 TTTATTTTATTTATTG
384504 TTTA-TTTATTTATT
1 TTTATTTTATTTATT
384518 TTTTCATTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (16 bp):
TTTATTTTATTTATTG
Found at i:398794 original size:20 final size:22
Alignment explanation
Indices: 398763--398802 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
398753 ATGGACATGG
398763 GACCCGAACCCGA-CGGGTTCC
1 GACCCGAACCCGATCGGGTTCC
398784 GACCC-AACCCGATCGGGTT
1 GACCCGAACCCGATCGGGTT
398803 GGATTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.20, C:0.40, G:0.28, T:0.12
Consensus pattern (22 bp):
GACCCGAACCCGATCGGGTTCC
Found at i:399406 original size:44 final size:44
Alignment explanation
Indices: 399337--399473 Score: 238
Period size: 44 Copynumber: 3.1 Consensus size: 44
399327 AATATAGATT
* *
399337 GGATCGAGTACCGAATGAAATGTTATAATACTCGAATTAGAATC
1 GGATCGAGTAACGAATGAAAGGTTATAATACTCGAATTAGAATC
* *
399381 GGATTGAGTAACGAATAAAAGGTTATAATACTCGAATTAGAATC
1 GGATCGAGTAACGAATGAAAGGTTATAATACTCGAATTAGAATC
399425 GGATCGAGTAACGAATGAAAGGTTATAATACTCGAATTAGAATC
1 GGATCGAGTAACGAATGAAAGGTTATAATACTCGAATTAGAATC
399469 GGATC
1 GGATC
399474 AGCCTAAAAC
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 87 1.00
ACGTcount: A:0.40, C:0.12, G:0.22, T:0.26
Consensus pattern (44 bp):
GGATCGAGTAACGAATGAAAGGTTATAATACTCGAATTAGAATC
Found at i:401469 original size:17 final size:18
Alignment explanation
Indices: 401437--401470 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
401427 ATATATGAAT
401437 TAAAATATAAACTAATAC
1 TAAAATATAAACTAATAC
*
401455 TAAAA-ATAAATTAATA
1 TAAAATATAAACTAATA
401471 AGATATTCAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (18 bp):
TAAAATATAAACTAATAC
Found at i:402762 original size:16 final size:16
Alignment explanation
Indices: 402741--402771 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
402731 GATAATTTAG
*
402741 ATACTAAATGCATAAC
1 ATACTAAATGAATAAC
402757 ATACTAAATGAATAA
1 ATACTAAATGAATAA
402772 TTTACCCTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.13, G:0.06, T:0.26
Consensus pattern (16 bp):
ATACTAAATGAATAAC
Found at i:403551 original size:98 final size:98
Alignment explanation
Indices: 403382--403572 Score: 328
Period size: 98 Copynumber: 1.9 Consensus size: 98
403372 CAACAGTCAA
* **
403382 TAGTTCATATCTAAGCAGAGGAAAATAATAGCACTCTGTGTTAGACGGGTGCATACTGATTCCGC
1 TAGTTCATATCTAAGCAAAGGAAAATAATAGCACTCTGTGTTAGACGGGTGCATACCAATTCCGC
*
403447 AAATTCTTCCTCTGATTAAATCATTTTTTCTTT
66 AAATTCTTCCTCAGATTAAATCATTTTTTCTTT
* *
403480 TAGTTCATATCTAAGCAAAGGAAAATAATAGCACTCTGTGTTAGACGGTTGCATACCAATTCGGC
1 TAGTTCATATCTAAGCAAAGGAAAATAATAGCACTCTGTGTTAGACGGGTGCATACCAATTCCGC
403545 AAATTCTTCCTCAGATTAAATCATTTTT
66 AAATTCTTCCTCAGATTAAATCATTTTT
403573 CCCAGATTTC
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 87 1.00
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (98 bp):
TAGTTCATATCTAAGCAAAGGAAAATAATAGCACTCTGTGTTAGACGGGTGCATACCAATTCCGC
AAATTCTTCCTCAGATTAAATCATTTTTTCTTT
Found at i:404390 original size:18 final size:18
Alignment explanation
Indices: 404354--404387 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
404344 CTTAAAATAT
404354 ATTATTATTATTTATTTA
1 ATTATTATTATTTATTTA
404372 ATTATT-TTATTTATTT
1 ATTATTATTATTTATTT
404388 TAAATAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
ATTATTATTATTTATTTA
Found at i:410668 original size:16 final size:17
Alignment explanation
Indices: 410642--410697 Score: 53
Period size: 17 Copynumber: 3.1 Consensus size: 17
410632 ATATTATGAT
410642 TATTATATTTTATTAAAA
1 TATTAT-TTTTATTAAAA
410660 TATT-TTTTTA-TAAATTA
1 TATTATTTTTATTAAA--A
410677 TATTAATTATTTATTAAAA
1 TATT-ATT-TTTATTAAAA
410696 TA
1 TA
410698 AGAATAATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
15 4 0.12
16 5 0.16
17 6 0.19
18 4 0.12
19 5 0.16
20 4 0.12
21 4 0.12
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TATTATTTTTATTAAAA
Found at i:410754 original size:15 final size:15
Alignment explanation
Indices: 410731--410760 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
410721 TTAATTGTTT
410731 ATTAAAATATTAAAA
1 ATTAAAATATTAAAA
*
410746 ATTATAATATTAAAA
1 ATTAAAATATTAAAA
410761 TCATATTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
ATTAAAATATTAAAA
Found at i:410928 original size:31 final size:31
Alignment explanation
Indices: 410843--410920 Score: 102
Period size: 31 Copynumber: 2.5 Consensus size: 31
410833 CTTTTAAAAC
* * *
410843 TTGCAATATAGTTCCCTAACATTTAGTCTAT
1 TTGCAATATGGTCCCCCAACATTTAGTCTAT
* * *
410874 TTGTAATATGGTCCCCCATCATTTAGTCTGT
1 TTGCAATATGGTCCCCCAACATTTAGTCTAT
410905 TTGCAATATGGTCCCC
1 TTGCAATATGGTCCCC
410921 GACCATTTGA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (31 bp):
TTGCAATATGGTCCCCCAACATTTAGTCTAT
Found at i:413010 original size:21 final size:21
Alignment explanation
Indices: 412986--413054 Score: 63
Period size: 21 Copynumber: 3.4 Consensus size: 21
412976 TAAAATAAAA
412986 ATAAAAATAAAATTATATATT
1 ATAAAAATAAAATTATATATT
* * **
413007 ATAATAATATAATTATA-ACA
1 ATAAAAATAAAATTATATATT
413027 AT-AAAATAAAA-TATTATATT
1 ATAAAAATAAAATTA-TATATT
*
413047 ATTAAAAT
1 ATAAAAAT
413055 TATCAATAAA
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
18 2 0.05
19 9 0.24
20 6 0.16
21 20 0.54
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (21 bp):
ATAAAAATAAAATTATATATT
Found at i:413056 original size:35 final size:35
Alignment explanation
Indices: 412968--413069 Score: 91
Period size: 35 Copynumber: 2.9 Consensus size: 35
412958 AATTTTATTA
* * * *
412968 TATATTATTAAAATAAAAATAAAAATAAAATTATATAT
1 TATATTATTAAAAT---TATAACAATAAAATAAAATAT
* * *
413006 TATAATAATATAATTATAACAATAAAATAAAATAT
1 TATATTATTAAAATTATAACAATAAAATAAAATAT
413041 TATATTATTAAAATTAT--CAATAAATATAA
1 TATATTATTAAAATTATAACAATAAA-ATAA
413070 TTCCAGGTAT
Statistics
Matches: 53, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
33 7 0.13
34 4 0.08
35 31 0.58
38 11 0.21
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (35 bp):
TATATTATTAAAATTATAACAATAAAATAAAATAT
Found at i:418707 original size:205 final size:205
Alignment explanation
Indices: 418355--418765 Score: 761
Period size: 205 Copynumber: 2.0 Consensus size: 205
418345 ATTGTAGACT
*
418355 TAACTTGGAAACTGTATGGAAGTATGATTGATTAGTGACTTTCCATCATAATTGATTAACTTGGG
1 TAACTTGGAAACTGTATGGAAGTATGATTGATTAGTGACTTTCCATCATAATTGATTAACTTGGA
*
418420 TAATCATATCATTGGAGAAACACATTGACGACCCTCCAATTATAAGGTAACTAGGACTTATCAAT
66 TAATCATATCATTGGAGAAACACATTGACAACCCTCCAATTATAAGGTAACTAGGACTTATCAAT
*
418485 ATCCTAGGCTTCCCCCTAGAGGTTATGGATTGTCTCACATCCTAATCTGACTCTCCTAGGATAAC
131 ATCCTAGGCTTCCCCCTAGAGGTTATGGATAGTCTCACATCCTAATCTGACTCTCCTAGGATAAC
418550 TGAACCTAAA
196 TGAACCTAAA
418560 TAACTTGGAAACTAGTATGGAAGTATGATTGATTAGTG-CTTTCCATCATAATTGATTAACTTGG
1 TAACTTGGAAACT-GTATGGAAGTATGATTGATTAGTGACTTTCCATCATAATTGATTAACTTGG
*
418624 ATAATCATATCATTGGAGAAACACATTGACAACCCTCCAATTATAAGGTAACTAGGACTTATCGA
65 ATAATCATATCATTGGAGAAACACATTGACAACCCTCCAATTATAAGGTAACTAGGACTTATCAA
*
418689 TATCCTAGGCTTCCCCCTAGAGGTTATGGATAGTCTCAGATCCTAATCTGACTCTCCTAGGATAA
130 TATCCTAGGCTTCCCCCTAGAGGTTATGGATAGTCTCACATCCTAATCTGACTCTCCTAGGATAA
418754 CTGAACCTAAA
195 CTGAACCTAAA
418765 T
1 T
418766 TCTCACCGAA
Statistics
Matches: 200, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
205 176 0.88
206 24 0.12
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (205 bp):
TAACTTGGAAACTGTATGGAAGTATGATTGATTAGTGACTTTCCATCATAATTGATTAACTTGGA
TAATCATATCATTGGAGAAACACATTGACAACCCTCCAATTATAAGGTAACTAGGACTTATCAAT
ATCCTAGGCTTCCCCCTAGAGGTTATGGATAGTCTCACATCCTAATCTGACTCTCCTAGGATAAC
TGAACCTAAA
Found at i:424541 original size:20 final size:20
Alignment explanation
Indices: 424516--424562 Score: 85
Period size: 20 Copynumber: 2.3 Consensus size: 20
424506 TGAAATTTTA
424516 GTTATACCTATATGATTAAT
1 GTTATACCTATATGATTAAT
424536 GTTATACCTATATGATTAAT
1 GTTATACCTATATGATTAAT
424556 GTGTATA
1 GT-TATA
424563 TATATATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 22 0.85
21 4 0.15
ACGTcount: A:0.34, C:0.09, G:0.13, T:0.45
Consensus pattern (20 bp):
GTTATACCTATATGATTAAT
Found at i:424566 original size:2 final size:2
Alignment explanation
Indices: 424559--424591 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
424549 GATTAATGTG
424559 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
424592 GTGTGTGTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:424810 original size:31 final size:29
Alignment explanation
Indices: 424766--424829 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 29
424756 TCGCAAATCT
* * *
424766 AAAATTTTCAAACTCGACTCAAACTCGAAA
1 AAAATATTAAAACTCAACTCAAACTC-AAA
*
424796 GAAAATATTAAAACTCAACTCGAACTCAAA
1 -AAAATATTAAAACTCAACTCAAACTCAAA
424826 AAAA
1 AAAA
424830 CTCAAACTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 4 0.14
30 3 0.10
31 22 0.76
ACGTcount: A:0.53, C:0.20, G:0.06, T:0.20
Consensus pattern (29 bp):
AAAATATTAAAACTCAACTCAAACTCAAA
Found at i:424844 original size:15 final size:16
Alignment explanation
Indices: 424812--424845 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
424802 ATTAAAACTC
*
424812 AACTCGAACTCAAAAA
1 AACTCAAACTCAAAAA
424828 AACTCAAACTCAAAAA
1 AACTCAAACTCAAAAA
424844 AA
1 AA
424846 AATTCAAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.62, C:0.24, G:0.03, T:0.12
Consensus pattern (16 bp):
AACTCAAACTCAAAAA
Found at i:426245 original size:7 final size:7
Alignment explanation
Indices: 426231--426271 Score: 55
Period size: 7 Copynumber: 5.9 Consensus size: 7
426221 CACGTAATCA
426231 GATTTAG
1 GATTTAG
*
426238 GTTTTAG
1 GATTTAG
426245 GATTTAG
1 GATTTAG
*
426252 GGTTTAG
1 GATTTAG
*
426259 GGTTTAG
1 GATTTAG
426266 GATTTA
1 GATTTA
426272 TTGCAAAGAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.22, C:0.00, G:0.32, T:0.46
Consensus pattern (7 bp):
GATTTAG
Found at i:426429 original size:11 final size:11
Alignment explanation
Indices: 426413--426475 Score: 51
Period size: 11 Copynumber: 5.9 Consensus size: 11
426403 GTATTATAGA
426413 ATTTTTAATAT
1 ATTTTTAATAT
426424 ATTTTTAA-A-
1 ATTTTTAATAT
426433 ATTTTATAAT-T
1 ATTTT-TAATAT
*** * *
426444 ATCAATAGTGT
1 ATTTTTAATAT
426455 ATTTTTAATAT
1 ATTTTTAATAT
426466 ATTTTTAATA
1 ATTTTTAATA
426476 ATGTAATTTT
Statistics
Matches: 39, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
9 5 0.13
10 7 0.18
11 27 0.69
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.57
Consensus pattern (11 bp):
ATTTTTAATAT
Found at i:433772 original size:29 final size:29
Alignment explanation
Indices: 433738--433797 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
433728 CCTAAATTAA
433738 TTTGATGTCATTGCTTACATCAATTTAGT
1 TTTGATGTCATTGCTTACATCAATTTAGT
433767 TTTGATGTCATTGCTTACATCAATTTAGT
1 TTTGATGTCATTGCTTACATCAATTTAGT
433796 TT
1 TT
433798 GGTGAAAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.23, C:0.13, G:0.13, T:0.50
Consensus pattern (29 bp):
TTTGATGTCATTGCTTACATCAATTTAGT
Found at i:442095 original size:41 final size:41
Alignment explanation
Indices: 442049--442422 Score: 205
Period size: 40 Copynumber: 9.1 Consensus size: 41
442039 GAGTAAAGAG
*
442049 TAAAGTACGAGTATTTAGCGGAGTTTGTATATAAACGCCAC
1 TAAAGTACGAGTATTTAGCGGAGTTTGTATAAAAACGCCAC
* * * *
442090 TAAAGTTC-AATATTTAGCGGCGTTTATAT-AAAA---CAC
1 TAAAGTACGAGTATTTAGCGGAGTTTGTATAAAAACGCCAC
* ** *
442126 TAAAGTACTAGTATTTAGCGTTGTTTGTGCTTAAAAA-GCCAC
1 TAAAGTACGAGTATTTAGCGGAGTTTGT--ATAAAAACGCCAC
** * * **
442168 TAAAGTACGAGCCTTTAGTGGCGTTTGTATAAAAAAAACCAC
1 TAAAGTACGAGTATTTAGCGGAGTTTGTAT-AAAAACGCCAC
* ** **
442210 TAAAGTATGAGTATTTAGCGGCCTTTGTATAAAAACATCAC
1 TAAAGTACGAGTATTTAGCGGAGTTTGTATAAAAACGCCAC
* * * ** * * *
442251 TAAATTA-TAGTATTTAGCAGCCTTTGTGCTTAAGACGCCAC
1 TAAAGTACGAGTATTTAGCGGAGTTTGT-ATAAAAACGCCAC
* * * * *
442292 TAAAG-GCAAGTACAAACCTTTAGC-GACATTTATATAAAAACACCAC
1 TAAAGTACGAGT----A--TTTAGCGGA-GTTTGTATAAAAACGCCAC
*
442338 TAAAGTAC-AGTATTTAGC-GACGTTTATATAAAAACGCCAC
1 TAAAGTACGAGTATTTAGCGGA-GTTTGTATAAAAACGCCAC
* * * *
442378 TAAAGTACTAGTATTTACCGAAGTTTGT-TAAAAAACGCCGC
1 TAAAGTACGAGTATTTAGCGGAGTTTGTAT-AAAAACGCCAC
442419 TAAA
1 TAAA
442423 TAAAAACTCA
Statistics
Matches: 261, Mismatches: 51, Indels: 42
0.74 0.14 0.12
Matches are distributed among these distances:
36 10 0.04
37 15 0.06
39 4 0.02
40 76 0.29
41 70 0.27
42 56 0.21
45 1 0.00
46 18 0.07
47 11 0.04
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.30
Consensus pattern (41 bp):
TAAAGTACGAGTATTTAGCGGAGTTTGTATAAAAACGCCAC
Found at i:442263 original size:40 final size:42
Alignment explanation
Indices: 442049--442277 Score: 138
Period size: 42 Copynumber: 5.7 Consensus size: 42
442039 GAGTAAAGAG
* ** * **
442049 TAAAGTACGAGTATTTAGCGGAGTTTGTAT-ATAAACGCCAC
1 TAAAGTATGAGTATTTAGCGGCCTTTGTATAAAAAAAACCAC
* * * *
442090 TAAAGT-TCAATATTTAGCGG-CGTT-TAT--ATAAAA-CAC
1 TAAAGTATGAGTATTTAGCGGCCTTTGTATAAAAAAAACCAC
*** * * *
442126 TAAAGTACT-AGTATTTAGCGTTGTTTGTGCT-TAAAAAGCCAC
1 TAAAGTA-TGAGTATTTAGCGGCCTTTGT-ATAAAAAAAACCAC
* ** * *
442168 TAAAGTACGAGCCTTTAGTGGCGTTTGTATAAAAAAAACCAC
1 TAAAGTATGAGTATTTAGCGGCCTTTGTATAAAAAAAACCAC
* *
442210 TAAAGTATGAGTATTTAGCGGCCTTTGTAT-AAAAACATCAC
1 TAAAGTATGAGTATTTAGCGGCCTTTGTATAAAAAAAACCAC
* *
442251 TAAATTAT-AGTATTTAGCAGCCTTTGT
1 TAAAGTATGAGTATTTAGCGGCCTTTGT
442278 GCTTAAGACG
Statistics
Matches: 145, Mismatches: 34, Indels: 19
0.73 0.17 0.10
Matches are distributed among these distances:
36 9 0.06
37 12 0.08
38 6 0.04
39 3 0.02
40 30 0.21
41 27 0.19
42 58 0.40
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (42 bp):
TAAAGTATGAGTATTTAGCGGCCTTTGTATAAAAAAAACCAC
Found at i:450324 original size:149 final size:148
Alignment explanation
Indices: 450043--450715 Score: 766
Period size: 149 Copynumber: 4.7 Consensus size: 148
450033 GTGCCTAGAT
* *
450043 AATCTTATTTCACCCGGCCTACTCCACACGTTA-AGGCGCTCGGCGTAAGATCAGGTCATCATGT
1 AATCTTATTTCACCCGGCCTACTCCACACGTTAGA-GCGCTCGGCGTAAGATCAGGTCATCCTGC
* *
450107 CTACTCCCCTCTGGAAGTGCTCGGCATGAACTCTGTCTACCCTGCCTACCCCACACGTTGAAGCG
65 CTACTCCCCTCTGGAAGCGCTCGGCATGAACTCTGTCTACCCTGCCTACCCTACACGTTGAAGCG
*
450172 CTCGACGTGATATTAAATC
130 CTCGGCGTGATATTAAATC
* * * * * *
450191 ATATTTTATTTCACCTGGCCTACTCTACACGTTAGGGTGCTCGGCATAAGATCAGGTCATCCTGC
1 A-ATCTTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGATCAGGTCATCCTGC
* * * *
450256 CTACTCCCCTCTAGAAGCGCTCGACGTGAACTCTGTCTACCCTGCCTACCCTACACGTTG-AGAT
65 CTACTCCCCTCTGGAAGCGCTCGGCATGAACTCTGTCTACCCTGCCTACCCTACACGTTGAAG-C
450320 GCTCGGCGTG------AATC
129 GCTCGGCGTGATATTAAATC
*** * * *
450334 --TGGGA---CACCCTGCCTACTCCACACGTTAGAGCGCTCGACGTAAGATCAGATCATCCTGCC
1 AATCTTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGATCAGGTCATCCTGCC
* * * * *
450394 TACTCCCCTCTGGAAGCGCTCGGCATGCACTCTGTCTTCTCTGCCTACTCTAAACGTTGAAGCGC
66 TACTCCCCTCTGGAAGCGCTCGGCATGAACTCTGTCTACCCTGCCTACCCTACACGTTGAAGCGC
*
450459 TCGGCGTGATATTAAAGC
131 TCGGCGTGATATTAAATC
* *
450477 ACATCTTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCACCCTGC
1 A-ATCTTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGATCAGGTCATCCTGC
* * * * *
450542 CTACTCCCCTCTGGAAGCGCTCGGCATGTACTCTGTCTCCCCTACCTACTCT-CAACGTTGAAGT
65 CTACTCCCCTCTGGAAGCGCTCGGCATGAACTCTGTCTACCCTGCCTACCCTAC-ACGTTGAAGC
450606 GCTCGGCGTGATA-T---T-
129 GCTCGGCGTGATATTAAATC
* * * *
450621 -A---TA--GCACCCTGCCTACTCCACACGTTAGAGCGCCCAGCGTAAGATCAGGTCATCCTGCC
1 AATCTTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGATCAGGTCATCCTGCC
* *
450680 TACTCCCCACTGGAAGCGCTCGGTATGAACTCTGTC
66 TACTCCCCTCTGGAAGCGCTCGGCATGAACTCTGTC
450716 CCCCTTCCAA
Statistics
Matches: 448, Mismatches: 60, Indels: 45
0.81 0.11 0.08
Matches are distributed among these distances:
137 191 0.43
138 2 0.00
139 2 0.00
140 2 0.00
142 1 0.00
143 7 0.02
146 2 0.00
148 4 0.01
149 237 0.53
ACGTcount: A:0.21, C:0.33, G:0.21, T:0.25
Consensus pattern (148 bp):
AATCTTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGATCAGGTCATCCTGCC
TACTCCCCTCTGGAAGCGCTCGGCATGAACTCTGTCTACCCTGCCTACCCTACACGTTGAAGCGC
TCGGCGTGATATTAAATC
Found at i:450392 original size:46 final size:45
Alignment explanation
Indices: 450208--450399 Score: 119
Period size: 46 Copynumber: 4.2 Consensus size: 45
450198 ATTTCACCTG
* * * * * * *
450208 GCCTACTCTACACGTTAGGGTGCTCGGCATAAGATCAGGTCATCCT
1 GCCTACTCCACACGTTAGAGCGCTCGACGTAA-ATCAGATCACCCT
* *
450254 GCCTACTCC-C-C-TCTAGAAGCGCTCGACGTGAACTCTG-TCTACCCT
1 GCCTACTCCACACGT-TAG-AGCGCTCGACGT-AAATCAGATC-ACCCT
* * * *
450299 GCCTAC-CCTACACGTT-GAGATGCTCGGCGTGAATCTGGGA-CACCCT
1 GCCTACTCC-ACACGTTAGAG-CGCTCGACGTAAATC--AGATCACCCT
*
450345 GCCTACTCCACACGTTAGAGCGCTCGACGTAAGATCAGATCATCCT
1 GCCTACTCCACACGTTAGAGCGCTCGACGTAA-ATCAGATCACCCT
450391 GCCTACTCC
1 GCCTACTCC
450400 CCTCTGGAAG
Statistics
Matches: 112, Mismatches: 18, Indels: 32
0.69 0.11 0.20
Matches are distributed among these distances:
43 1 0.01
44 8 0.07
45 29 0.26
46 61 0.54
47 12 0.11
48 1 0.01
ACGTcount: A:0.21, C:0.34, G:0.21, T:0.23
Consensus pattern (45 bp):
GCCTACTCCACACGTTAGAGCGCTCGACGTAAATCAGATCACCCT
Found at i:450461 original size:137 final size:138
Alignment explanation
Indices: 450208--450886 Score: 710
Period size: 137 Copynumber: 4.9 Consensus size: 138
450198 ATTTCACCTG
* * * * * *
450208 GCCTACTCTACACGTTAGGGTGCTCGGCATAAGATCAGGTCATCCTGCCTACTCCCCTCTAGAAG
1 GCCTACTCCACACGTTAGAGCGCTCGACGTAAGATCAGGTCATCCTGCCTACTCCCCTCTGGAAG
* * * * *
450273 CGCTCGACGTGAACTCTGTCTACCCTGCCTACCCTACACGTTG-AGATGCTCGGCGTGA-ATCTG
66 CGCTCGGCATGAACTCTGTCTCCCCTGCCTACTCTAAACGTTGAAG-TGCTCGGCGTGATAT-TG
*
450336 GGA-CACCCT
129 GTATCACCCT
*
450345 GCCTACTCCACACGTTAGAGCGCTCGACGTAAGATCAGATCATCCTGCCTACTCCCCTCTGGAAG
1 GCCTACTCCACACGTTAGAGCGCTCGACGTAAGATCAGGTCATCCTGCCTACTCCCCTCTGGAAG
* * * *
450410 CGCTCGGCATGCACTCTGTCTTCTCTGCCTACTCTAAACGTTGAAGCGCTCGGCGTGATATTAAA
66 CGCTCGGCATGAACTCTGTCTCCCCTGCCTACTCTAAACGTTGAAGTGCTCGGCGTGATATT---
* *
450475 GCACATCTTATTTCACCCG
128 G------GTA--TCACCCT
* * *
450494 GCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCACCCTGCCTACTCCCCTCTGGAAG
1 GCCTACTCCACACGTTAGAGCGCTCGACGTAAGATCAGGTCATCCTGCCTACTCCCCTCTGGAAG
* * * *
450559 CGCTCGGCATGTACTCTGTCTCCCCTACCTACTCTCAACGTTGAAGTGCTCGGCGTGATATT-AT
66 CGCTCGGCATGAACTCTGTCTCCCCTGCCTACTCTAAACGTTGAAGTGCTCGGCGTGATATTGGT
*
450623 AGCACCCT
131 ATCACCCT
* *
450631 GCCTACTCCACACGTTAGAGCGC-CCAGCGTAAGATCAGGTCATCCTGCCTACTCCCCACTGGAA
1 GCCTACTCCACACGTTAGAGCGCTCGA-CGTAAGATCAGGTCATCCTGCCTACTCCCCTCTGGAA
* * * * * * *
450695 GCGCTCGGTATGAACTCTGTC-CCCCTTCCAACTCTTAACGGTGAAGTGCTCGGCGTGAAATAGG
65 GCGCTCGGCATGAACTCTGTCTCCCCTGCCTACTCTAAACGTTGAAGTGCTCGGCGTGATATTGG
*
450759 AAT-ACCCT
130 TATCACCCT
* * **
450767 GCCTACTCCATACGTTAGAGCGCCCGACGTAAGATCAGGTCATCCAACCTACT-CCCTACTGGAA
1 GCCTACTCCACACGTTAGAGCGCTCGACGTAAGATCAGGTCATCCTGCCTACTCCCCT-CTGGAA
* * * * * * * * *
450831 GCACTCGGTATGAACGCTGTC-CCCCTTCCAACTCTTAATGCTGAAGCGCTCGGCGT
65 GCGCTCGGCATGAACTCTGTCTCCCCTGCCTACTCTAAACGTTGAAGTGCTCGGCGT
450887 AATTCCTTAA
Statistics
Matches: 467, Mismatches: 57, Indels: 37
0.83 0.10 0.07
Matches are distributed among these distances:
135 3 0.01
136 144 0.31
137 190 0.41
138 4 0.01
139 2 0.00
140 1 0.00
146 1 0.00
149 122 0.26
ACGTcount: A:0.21, C:0.34, G:0.21, T:0.24
Consensus pattern (138 bp):
GCCTACTCCACACGTTAGAGCGCTCGACGTAAGATCAGGTCATCCTGCCTACTCCCCTCTGGAAG
CGCTCGGCATGAACTCTGTCTCCCCTGCCTACTCTAAACGTTGAAGTGCTCGGCGTGATATTGGT
ATCACCCT
Found at i:450577 original size:286 final size:286
Alignment explanation
Indices: 450053--450752 Score: 928
Period size: 286 Copynumber: 2.5 Consensus size: 286
450043 AATCTTATTT
* * * *
450053 CACCCGGCCTACTCCACACGTTA-AGGCGCTCGGCGTAAGATCAGGTCATCATGTCTACTCCCCT
1 CACCCTGCCTACTCCACACGTTAGA-GCGCTCGACGTAAGATCAGGTCATCCTGCCTACTCCCCT
* * * * *
450117 CTGGAAGTGCTCGGCATGAACTCTGTCTACCCTGCCTACCCCACACGTTGAAGCGCTCGACGTGA
65 CTGGAAGCGCTCGGCATGAACTCTGTCTACCCTGCCTACTCTAAACGTTGAAGCGCTCGGCGTGA
* * * * * * * *
450182 TATTAAATCATATTTTATTTCACCTGGCCTACTCTACACGTTAGGGTGCTCGGCATAAGATCAGG
130 TATTAAAGCACATCTTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCATAAGACCAGG
* * *
450247 TCATCCTGCCTACTCCCCTCTAGAAGCGCTCGACGTGAACTCTGTCTACCCTGCCTACCCT-ACA
195 TCACCCTGCCTACTCCCCTCTAGAAGCGCTCGACATGAACTCTGTCTACCCTACCTACCCTCA-A
*
450311 CGTTG-AGATGCTCGGCGTGA-ATCT-GGG
259 CGTTGAAG-TGCTCGGCGTGATAT-TAGAG
*
450338 ACACCCTGCCTACTCCACACGTTAGAGCGCTCGACGTAAGATCAGATCATCCTGCCTACTCCCCT
1 -CACCCTGCCTACTCCACACGTTAGAGCGCTCGACGTAAGATCAGGTCATCCTGCCTACTCCCCT
* * *
450403 CTGGAAGCGCTCGGCATGCACTCTGTCTTCTCTGCCTACTCTAAACGTTGAAGCGCTCGGCGTGA
65 CTGGAAGCGCTCGGCATGAACTCTGTCTACCCTGCCTACTCTAAACGTTGAAGCGCTCGGCGTGA
*
450468 TATTAAAGCACATCTTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGG
130 TATTAAAGCACATCTTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCATAAGACCAGG
* * * * *
450533 TCACCCTGCCTACTCCCCTCTGGAAGCGCTCGGCATGTACTCTGTCTCCCCTACCTACTCTCAAC
195 TCACCCTGCCTACTCCCCTCTAGAAGCGCTCGACATGAACTCTGTCTACCCTACCTACCCTCAAC
*
450598 GTTGAAGTGCTCGGCGTGATATTATAG
260 GTTGAAGTGCTCGGCGTGATATTAGAG
* *
450625 CACCCTGCCTACTCCACACGTTAGAGCGC-CCAGCGTAAGATCAGGTCATCCTGCCTACTCCCCA
1 CACCCTGCCTACTCCACACGTTAGAGCGCTCGA-CGTAAGATCAGGTCATCCTGCCTACTCCCCT
* * * * * * *
450689 CTGGAAGCGCTCGGTATGAACTCTGTC-CCCCTTCCAACTCTTAACGGTGAAGTGCTCGGCGTGA
65 CTGGAAGCGCTCGGCATGAACTCTGTCTACCCTGCCTACTCTAAACGTTGAAGCGCTCGGCGTGA
450753 AATAGGAATA
Statistics
Matches: 364, Mismatches: 44, Indels: 13
0.86 0.10 0.03
Matches are distributed among these distances:
285 32 0.09
286 325 0.89
287 7 0.02
ACGTcount: A:0.21, C:0.34, G:0.21, T:0.25
Consensus pattern (286 bp):
CACCCTGCCTACTCCACACGTTAGAGCGCTCGACGTAAGATCAGGTCATCCTGCCTACTCCCCTC
TGGAAGCGCTCGGCATGAACTCTGTCTACCCTGCCTACTCTAAACGTTGAAGCGCTCGGCGTGAT
ATTAAAGCACATCTTATTTCACCCGGCCTACTCCACACGTTAGAGCGCTCGGCATAAGACCAGGT
CACCCTGCCTACTCCCCTCTAGAAGCGCTCGACATGAACTCTGTCTACCCTACCTACCCTCAACG
TTGAAGTGCTCGGCGTGATATTAGAG
Found at i:450790 original size:136 final size:135
Alignment explanation
Indices: 450488--450886 Score: 530
Period size: 136 Copynumber: 2.9 Consensus size: 135
450478 CATCTTATTT
* * * * *
450488 CACCCGGCCTACTCCACACGTTAGAGCGCTCGGCGTAAGACCAGGTCACCCTGCCTACTCCCCTC
1 CACCCTGCCTACTCCACACGTTAGAGCGC-CCGCGTAAGATCAGGTCATCCTGCCTACTCCCCAC
* * * * * *
450553 TGGAAGCGCTCGGCATGTACTCTGTCTCCCCTACCTACTCTCAACGTTGAAGTGCTCGGCGTGAT
65 TGGAAGCGCTCGGTATGAACTCTGTC-CCCCTTCCAACTCTTAACGCTGAAGTGCTCGGCGTGAT
* * *
450618 ATTATAG
129 AATAGAA
450625 CACCCTGCCTACTCCACACGTTAGAGCGCCCAGCGTAAGATCAGGTCATCCTGCCTACTCCCCAC
1 CACCCTGCCTACTCCACACGTTAGAGCGCCC-GCGTAAGATCAGGTCATCCTGCCTACTCCCCAC
*
450690 TGGAAGCGCTCGGTATGAACTCTGTCCCCCTTCCAACTCTTAACGGTGAAGTGCTCGGCGTGA-A
65 TGGAAGCGCTCGGTATGAACTCTGTCCCCCTTCCAACTCTTAACGCTGAAGTGCTCGGCGTGATA
450754 ATAGGAA
130 ATA-GAA
* * ** *
450761 TACCCTGCCTACTCCATACGTTAGAGCGCCCGACGTAAGATCAGGTCATCCAACCTACTCCCTAC
1 CACCCTGCCTACTCCACACGTTAGAGCGCCCG-CGTAAGATCAGGTCATCCTGCCTACTCCCCAC
* * * *
450826 TGGAAGCACTCGGTATGAACGCTGTCCCCCTTCCAACTCTTAATGCTGAAGCGCTCGGCGT
65 TGGAAGCGCTCGGTATGAACTCTGTCCCCCTTCCAACTCTTAACGCTGAAGTGCTCGGCGT
450887 AATTCCTTAA
Statistics
Matches: 235, Mismatches: 24, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
135 4 0.02
136 149 0.63
137 82 0.35
ACGTcount: A:0.21, C:0.35, G:0.21, T:0.23
Consensus pattern (135 bp):
CACCCTGCCTACTCCACACGTTAGAGCGCCCGCGTAAGATCAGGTCATCCTGCCTACTCCCCACT
GGAAGCGCTCGGTATGAACTCTGTCCCCCTTCCAACTCTTAACGCTGAAGTGCTCGGCGTGATAA
TAGAA
Found at i:453307 original size:23 final size:23
Alignment explanation
Indices: 453277--453341 Score: 112
Period size: 23 Copynumber: 2.8 Consensus size: 23
453267 ACCATTGCTC
*
453277 GCTCGCTCGGATGCCCTCGCATA
1 GCTCGCTCGGCTGCCCTCGCATA
453300 GCTCGCTCGGCTGCCCTCGCATA
1 GCTCGCTCGGCTGCCCTCGCATA
*
453323 GCTCGCTCGGCTTCCCTCG
1 GCTCGCTCGGCTGCCCTCG
453342 GATGCTCTCG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.08, C:0.43, G:0.26, T:0.23
Consensus pattern (23 bp):
GCTCGCTCGGCTGCCCTCGCATA
Found at i:453374 original size:33 final size:33
Alignment explanation
Indices: 453305--453381 Score: 91
Period size: 33 Copynumber: 2.3 Consensus size: 33
453295 GCATAGCTCG
* ** *
453305 CTCGGCTGCCCTCGCATAGCTCGCTCGGCTTCC
1 CTCGGATGCCCTCGCATAGCTCGCTCGAATGCC
* * *
453338 CTCGGATGCTCTCGCATAGCTCGGTCGAATGGC
1 CTCGGATGCCCTCGCATAGCTCGCTCGAATGCC
453371 CTCGGATGCCC
1 CTCGGATGCCC
453382 AGCGTGTTGG
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.10, C:0.39, G:0.27, T:0.23
Consensus pattern (33 bp):
CTCGGATGCCCTCGCATAGCTCGCTCGAATGCC
Found at i:456374 original size:60 final size:60
Alignment explanation
Indices: 456308--456425 Score: 168
Period size: 60 Copynumber: 2.0 Consensus size: 60
456298 ATATTCAAGT
*
456308 GATCATTTT-TTAACTTTTAAAAGTCGAGAGACTCAACAAAATAACACC-CAATAATTGATG
1 GATCATTTTATT-ACTTTTAAAAGTCGAGAGACTCAACAAAACAACACCTC-ATAATTGATG
* * *
456368 GATCATTTTATTACTTTTAATAGTCGAGAGACTCAATAAAGCAACACCTCATAATTGA
1 GATCATTTTATTACTTTTAAAAGTCGAGAGACTCAACAAAACAACACCTCATAATTGA
456426 GATTCGATTT
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
60 49 0.94
61 3 0.06
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (60 bp):
GATCATTTTATTACTTTTAAAAGTCGAGAGACTCAACAAAACAACACCTCATAATTGATG
Found at i:462910 original size:29 final size:29
Alignment explanation
Indices: 462878--462940 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 29
462868 ATGAAATTAT
* *
462878 AAAAACTAGGGGTCCAAAATATAAATATA
1 AAAAACTAAGGGTCCAAAATATAAATACA
* ** *
462907 AAAAATTAAGGGTCTTAATTATAAATACA
1 AAAAACTAAGGGTCCAAAATATAAATACA
462936 AAAAA
1 AAAAA
462941 TTGGGCCCTG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.57, C:0.08, G:0.11, T:0.24
Consensus pattern (29 bp):
AAAAACTAAGGGTCCAAAATATAAATACA
Found at i:463701 original size:30 final size:30
Alignment explanation
Indices: 463666--463724 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
463656 TAAAATATAT
* *
463666 TACATGAAAATTGTTTTACGTTAAATGAAA
1 TACATGAAAACTGTTTTACGTAAAATGAAA
463696 TACATGAAAACTGTTTTACGTAAAATGAA
1 TACATGAAAACTGTTTTACGTAAAATGAA
463725 TTATATTTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.34
Consensus pattern (30 bp):
TACATGAAAACTGTTTTACGTAAAATGAAA
Found at i:464155 original size:27 final size:27
Alignment explanation
Indices: 464059--464164 Score: 74
Period size: 27 Copynumber: 3.9 Consensus size: 27
464049 CCTTATTATT
* * *
464059 AATAATTTAATAATATTATGTTTATAAA
1 AATAATATAATATTATTATATTTA-AAA
*
464087 AATAATAGTTAATATTAATTATA-TTAATA
1 AATAATA--TAATATT-ATTATATTTAAAA
* * *
464116 ATTTAT-TATATATTATTAAATTTAAAA
1 AATAATATA-ATATTATTATATTTAAAA
*
464143 AATAATATAATA-TAATATATTT
1 AATAATATAATATTATTATATTT
464165 GAGTACATAT
Statistics
Matches: 60, Mismatches: 12, Indels: 14
0.70 0.14 0.16
Matches are distributed among these distances:
26 15 0.25
27 17 0.28
28 8 0.13
29 6 0.10
30 9 0.15
31 5 0.08
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (27 bp):
AATAATATAATATTATTATATTTAAAA
Found at i:464193 original size:14 final size:15
Alignment explanation
Indices: 464172--464216 Score: 60
Period size: 14 Copynumber: 3.2 Consensus size: 15
464162 TTTGAGTACA
464172 TATT-AATATAATAT
1 TATTAAATATAATAT
464186 T-TTAAATATAATAT
1 TATTAAATATAATAT
*
464200 TATTAAA-ATTATAT
1 TATTAAATATAATAT
464214 TAT
1 TAT
464217 ATTTATATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
13 2 0.07
14 21 0.75
15 5 0.18
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
TATTAAATATAATAT
Found at i:464199 original size:25 final size:25
Alignment explanation
Indices: 464135--464201 Score: 66
Period size: 25 Copynumber: 2.7 Consensus size: 25
464125 ATATTATTAA
* *
464135 ATTTAAAAAATAATA-TAATATAAT
1 ATTTTAAATATAATATTAATATAAT
* * *
464159 ATATTTGAGTA-CATATTAATATAAT
1 AT-TTTAAATATAATATTAATATAAT
464184 ATTTTAAATATAATATTA
1 ATTTTAAATATAATATTA
464202 TTAAAATTAT
Statistics
Matches: 32, Mismatches: 8, Indels: 5
0.71 0.18 0.11
Matches are distributed among these distances:
24 11 0.34
25 21 0.66
ACGTcount: A:0.52, C:0.01, G:0.03, T:0.43
Consensus pattern (25 bp):
ATTTTAAATATAATATTAATATAAT
Found at i:464271 original size:19 final size:19
Alignment explanation
Indices: 464249--464298 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 19
464239 ATTAATATTT
*
464249 TTATTAAAATGATATTAAA
1 TTATTAAAATAATATTAAA
*
464268 TTATTAAATTAATATTAAA
1 TTATTAAAATAATATTAAA
*
464287 TAATT-AAATAAT
1 TTATTAAAATAAT
464299 TTTTTTGAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
18 6 0.22
19 21 0.78
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (19 bp):
TTATTAAAATAATATTAAA
Found at i:464289 original size:50 final size:52
Alignment explanation
Indices: 464199--464302 Score: 126
Period size: 50 Copynumber: 2.0 Consensus size: 52
464189 AAATATAATA
* * * *
464199 TTATTAAAATTATATTATATTTATATTAAATATTTTAATAATT-AAT-ATTT
1 TTATTAAAATGATATTAAATTTAAATTAAATATTTAAATAATTAAATAATTT
464249 TTATTAAAATGATATTAAATTATTAAATT-AATA-TTAAATAATTAAATAATTT
1 TTATTAAAATGATATTAAA-T-TTAAATTAAATATTTAAATAATTAAATAATTT
464301 TT
1 TT
464303 TTGAGTACTT
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
50 26 0.57
51 8 0.17
52 12 0.26
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (52 bp):
TTATTAAAATGATATTAAATTTAAATTAAATATTTAAATAATTAAATAATTT
Found at i:466332 original size:2 final size:2
Alignment explanation
Indices: 466327--466351 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
466317 TCGACAAAAT
466327 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
466352 TTACTCTGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:476997 original size:2 final size:2
Alignment explanation
Indices: 476990--477033 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
476980 CCTTTTTCAA
476990 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
477031 AT A
1 AT A
477034 ATTTAATATA
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 40 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:477197 original size:13 final size:14
Alignment explanation
Indices: 477179--477209 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
477169 TTTTTAAAAT
477179 AAAATATTTTT-TA
1 AAAATATTTTTCTA
477192 AAAATATTTTTCTA
1 AAAATATTTTTCTA
477206 AAAA
1 AAAA
477210 ATCTAAATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (14 bp):
AAAATATTTTTCTA
Found at i:481591 original size:14 final size:14
Alignment explanation
Indices: 481572--481612 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
481562 AAAAACATGA
481572 TTTCTGATTACTAG
1 TTTCTGATTACTAG
* *
481586 TTTCTGATTTCTGG
1 TTTCTGATTACTAG
481600 TTTCTGA-TACTAG
1 TTTCTGATTACTAG
481613 GTATAACTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
13 4 0.17
14 19 0.83
ACGTcount: A:0.17, C:0.15, G:0.17, T:0.51
Consensus pattern (14 bp):
TTTCTGATTACTAG
Found at i:484572 original size:20 final size:20
Alignment explanation
Indices: 484495--484565 Score: 142
Period size: 20 Copynumber: 3.5 Consensus size: 20
484485 AGGCTATTCC
484495 CTGGTAATCTTTTATTCCCA
1 CTGGTAATCTTTTATTCCCA
484515 CTGGTAATCTTTTATTCCCA
1 CTGGTAATCTTTTATTCCCA
484535 CTGGTAATCTTTTATTCCCA
1 CTGGTAATCTTTTATTCCCA
484555 CTGGTAATCTT
1 CTGGTAATCTT
484566 ACATTCCGTG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 51 1.00
ACGTcount: A:0.20, C:0.24, G:0.11, T:0.45
Consensus pattern (20 bp):
CTGGTAATCTTTTATTCCCA
Done.