genome.fa.s9030.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009030.1 Hibiscus syriacus cultivar Beakdansim tig00112430_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53432

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4791--4944	76	2.0	79	84	6	208	43	6	8	41	1.61
5801--5851	2	25.5	2	100	0	102	49	0	0	50	1.00
15531--15609	31	2.5	31	89	4	115	17	10	17	54	1.70
16237--16276	20	2.0	20	90	9	64	35	10	15	40	1.80
18524--18598	31	2.4	31	88	0	114	53	14	10	21	1.71
19173--19245	30	2.4	31	84	9	96	21	16	12	49	1.78
24565--24609	16	2.8	16	93	0	72	33	17	11	37	1.85
24565--24620	16	3.6	16	87	2	60	32	17	10	39	1.84
26744--26771	7	4.0	7	100	0	56	14	0	28	57	1.38
29838--29889	20	2.6	20	96	0	95	38	26	13	21	1.90
29945--30138	20	9.6	20	76	8	76	35	25	19	19	1.95
29941--30138	40	5.0	39	81	4	200	35	26	19	19	1.95
29945--30137	60	3.2	60	83	0	251	35	25	19	19	1.95
30517--30587	33	2.2	33	92	0	115	11	22	18	47	1.80
30708--30762	14	3.6	14	73	21	56	41	23	25	9	1.83
30708--30778	33	2.2	33	94	0	124	43	25	22	8	1.81
30796--30885	14	5.7	14	72	23	72	8	24	23	43	1.82
30779--30893	33	3.5	33	93	0	203	9	23	20	46	1.80
30774--30886	19	6.8	18	70	23	79	9	23	22	44	1.82
32376--32837	92	5.1	93	93	5	806	22	12	18	46	1.83
32376--32837	183	2.6	180	94	4	810	22	12	18	46	1.83
32880--33006	19	7.3	19	73	20	116	45	29	16	8	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32916--33006	32	2.8	32	94	0	155	46	28	17	7	1.76
32880--33006	51	2.5	51	76	13	143	45	29	16	8	1.77
33002--33136	19	7.6	19	74	16	119	11	19	23	45	1.82
33019--33099	16	4.9	15	70	20	56	9	20	22	46	1.80
33007--33099	33	2.8	34	90	4	154	10	20	21	47	1.80
35154--35255	19	5.6	19	84	13	151	44	17	23	14	1.86
35284--35574	19	16.4	19	81	15	374	14	20	18	46	1.83
35262--35574	51	5.9	50	83	12	319	14	20	18	46	1.84
37825--37849	12	2.1	12	100	0	50	0	28	0	72	0.86
38023--38067	23	2.0	23	86	8	65	35	22	15	26	1.94
38619--38657	20	1.9	21	89	5	62	23	7	43	25	1.80
38745--39107	20	18.5	20	84	7	406	20	18	26	35	1.95
38786--39106	115	2.7	116	84	9	391	20	19	26	33	1.96
43170--43209	16	2.5	16	91	0	62	20	12	20	47	1.81
45981--46166	2	95.5	2	67	22	94	50	3	3	43	1.34
45981--46167	7	26.9	7	71	19	71	50	3	3	43	1.34
46256--46351	32	2.9	33	86	8	133	40	3	10	45	1.54
46254--46392	34	4.0	35	81	12	146	43	3	9	43	1.54
46347--46483	63	2.2	62	76	10	134	45	3	8	42	1.52
46385--46439	26	2.1	27	89	3	85	32	3	12	50	1.58
46450--46730	36	7.6	36	75	11	180	48	3	6	42	1.45
46486--46732	73	3.4	71	78	10	250	47	3	5	42	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46716--46743	2	14.0	2	100	0	56	50	0	0	50	1.00
46751--46802	14	3.6	14	82	7	52	21	3	0	75	0.97
47849--47891	19	2.4	19	88	7	63	11	9	2	76	1.10
47927--47975	8	5.8	8	83	11	62	16	0	2	81	0.78
47842--47976	20	6.9	18	72	16	74	14	5	2	77	1.08
47923--47975	17	3.0	17	83	10	63	18	0	1	79	0.83
47861--47978	19	6.3	18	71	20	75	16	4	3	76	1.08
48497--48538	16	2.4	18	80	7	52	52	2	4	40	1.35
48835--48878	19	2.2	20	92	4	72	25	31	0	43	1.55
50766--50800	13	2.8	12	84	16	52	34	2	0	62	1.10
51809--51833	7	3.6	7	100	0	50	56	0	0	44	0.99
51806--51865	29	2.1	29	81	6	68	51	0	0	48	1.00

Tables:   1

The End!