genome.fa.s9031.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009031.1 Hibiscus syriacus cultivar Beakdansim tig00112432_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  141121

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1742--1800	27	2.4	26	81	15	72	27	11	18	42	1.85
9403--9433	13	2.3	14	94	5	55	6	51	0	41	1.27
13943--13967	10	2.5	10	100	0	50	20	32	24	24	1.98
14543--14622	16	5.0	15	73	14	54	27	3	1	67	1.15
14630--14710	32	2.6	31	81	11	78	32	3	1	62	1.20
14657--14713	21	2.8	21	78	7	55	24	5	1	68	1.20
14630--14712	28	2.9	30	80	12	84	31	3	1	63	1.19
14654--14712	31	1.9	31	86	13	86	25	5	1	67	1.20
14859--14915	16	3.2	18	74	23	57	22	1	0	75	0.90
14858--14928	17	4.5	16	71	28	55	23	2	1	71	1.07
16207--16243	19	1.9	19	89	10	58	13	18	0	67	1.23
19658--19710	14	3.7	14	79	20	56	79	5	13	1	0.99
19657--19715	15	3.9	15	77	20	61	79	5	13	1	0.97
20325--20379	22	2.5	22	96	0	101	38	27	10	23	1.88
21339--22388	106	9.9	106	91	0	1591	34	25	17	22	1.96
23073--23177	37	2.8	37	83	0	138	40	15	13	31	1.85
23904--23971	30	2.3	30	85	11	97	25	2	0	72	0.99
23907--23955	13	3.7	14	81	10	50	26	2	0	71	0.97
24023--24087	18	3.8	16	80	15	60	16	6	1	75	1.08
24560--24619	31	1.9	31	89	0	93	40	5	10	45	1.60
25054--25102	18	2.6	19	78	18	57	63	0	0	36	0.95
25163--25243	13	6.4	13	68	16	62	56	1	0	41	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25130--25211	26	3.2	26	79	6	69	56	0	1	42	1.07
25163--25269	13	8.7	12	69	19	60	58	2	0	38	1.12
25111--25270	64	2.4	64	86	7	214	57	2	0	39	1.17
25227--25277	17	2.9	18	80	8	61	66	5	0	27	1.14
30312--30345	16	2.1	17	88	5	52	64	0	0	35	0.94
30698--30731	16	2.1	17	88	5	52	35	0	0	64	0.94
32003--32079	39	2.0	39	92	0	127	36	18	10	35	1.85
33046--33104	16	3.6	16	76	17	59	67	5	0	27	1.11
34314--34365	21	2.4	22	80	6	61	48	5	0	46	1.26
35340--35430	45	2.0	45	86	0	128	28	17	10	42	1.83
35783--35816	10	3.4	10	87	0	50	79	8	0	11	0.94
38134--38181	21	2.3	21	100	0	96	37	41	12	8	1.73
83341--83394	22	2.6	21	94	5	92	9	5	16	68	1.35
92816--92864	2	24.5	2	100	0	98	51	0	0	48	1.00
93006--93119	39	2.9	38	78	15	135	43	0	18	36	1.56
93964--94021	28	2.1	28	83	0	71	36	15	12	36	1.85
101333--101400	27	2.5	27	85	4	93	16	8	19	55	1.66
102190--102248	20	3.0	20	74	16	59	52	0	0	47	1.00
105391--105502	29	3.9	29	98	0	215	47	13	21	17	1.82
116060--116084	12	2.1	12	100	0	50	68	8	0	24	1.16
116294--116333	14	3.1	13	82	10	55	60	0	0	40	0.97
117468--117508	16	2.6	16	100	0	82	17	19	56	7	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117621--117764	3	48.0	3	84	0	189	59	0	1	39	1.06
118084--118849	113	6.8	112	92	1	1072	29	18	14	36	1.91
118084--118849	226	3.4	226	91	1	1189	29	18	14	36	1.91
118097--118848	339	2.2	337	91	1	1182	29	19	14	36	1.92
118791--118888	40	2.5	40	96	0	178	19	24	8	47	1.76
118565--119116	266	2.1	266	96	1	1009	29	19	13	37	1.90
118678--119003	153	2.1	153	98	0	625	27	20	12	38	1.89
118831--119152	113	2.8	113	94	1	558	28	19	14	36	1.92
118452--119152	379	1.8	377	94	2	1244	29	19	14	36	1.91
119934--120519	83	7.1	84	94	2	906	36	21	14	27	1.92
121569--121652	9	9.6	9	76	16	79	1	15	0	83	0.71
121576--121652	18	4.6	17	80	16	90	1	14	0	84	0.69
121570--121655	31	2.7	30	87	12	104	1	15	0	83	0.70
132769--132793	12	2.1	12	100	0	50	68	8	0	24	1.16
133001--133040	14	3.1	13	82	10	55	60	0	0	40	0.97
134366--134473	3	36.0	3	77	3	110	57	0	1	40	1.09
134366--134473	24	4.8	24	83	13	147	57	0	1	40	1.09
135803--135856	22	2.4	23	84	9	67	51	7	7	33	1.58
138861--138903	20	2.2	19	84	12	52	67	2	0	30	1.03
138873--138977	5	20.6	5	71	17	65	54	4	0	40	1.28
138876--139089	9	23.9	9	65	18	74	51	8	2	37	1.46
138942--138988	12	3.7	13	83	11	53	51	2	2	44	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138912--138985	39	1.9	37	84	10	96	51	4	2	41	1.35

Tables:   1

The End!