genome.fa.s9032.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009032.1 Hibiscus syriacus cultivar Beakdansim tig00112433_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100409

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5--62	9	6.7	9	84	7	75	0	15	0	84	0.62
8--62	8	6.5	8	84	15	67	0	14	0	85	0.60
5--62	17	3.4	17	86	11	82	0	15	0	84	0.62
7--65	25	2.5	25	89	8	88	0	15	0	84	0.62
10644--10707	28	2.2	29	76	18	71	65	1	4	28	1.21
11126--11150	12	2.1	12	100	0	50	68	8	0	24	1.16
11360--11399	14	3.1	13	82	10	55	60	0	0	40	0.97
12742--12858	3	39.0	3	82	0	144	58	0	1	40	1.08
12744--12858	24	4.8	24	94	0	194	58	0	1	40	1.08
16506--16539	18	1.9	18	88	5	52	50	35	2	11	1.54
17329--17366	5	7.6	5	87	0	58	55	2	0	42	1.14
17332--17506	2	91.5	2	63	26	51	48	8	1	41	1.44
17375--17451	7	10.7	7	68	15	50	50	5	1	42	1.32
17326--17545	18	11.6	18	67	23	80	49	9	1	39	1.44
17442--17530	26	3.6	25	73	23	73	48	13	2	35	1.55
18445--18485	22	1.9	21	85	5	55	19	9	12	58	1.61
23090--23154	23	2.8	23	97	0	121	33	7	21	36	1.82
23233--23963	199	3.6	200	82	7	799	30	15	14	39	1.87
26665--27218	200	2.8	199	88	2	797	32	15	13	38	1.87
27669--27734	33	2.0	33	84	0	87	22	42	0	34	1.54
27768--27809	21	2.0	21	85	0	57	16	28	11	42	1.84
30038--30083	20	2.3	19	78	10	56	21	17	8	52	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30004--30477	180	2.6	181	85	5	616	28	16	13	41	1.86
31649--31679	5	6.0	5	96	3	53	77	0	3	19	0.90
32198--32338	30	4.7	30	79	4	131	58	8	14	18	1.62
32181--32338	60	2.6	60	77	5	167	57	9	14	18	1.63
33540--33612	3	24.7	3	97	2	139	65	0	0	34	0.93
34088--34192	30	3.5	31	79	8	87	41	12	13	32	1.81
34369--34455	37	2.4	37	82	7	97	34	11	21	32	1.89
35633--35713	24	3.5	24	79	17	82	2	14	4	77	1.04
35633--35708	32	2.4	31	79	14	75	2	14	5	77	1.05
39566--39654	30	2.9	30	78	8	108	56	7	14	21	1.64
39520--39662	30	4.8	30	72	10	105	56	8	13	21	1.63
41124--41173	20	2.5	20	83	0	64	28	36	12	24	1.91
41232--41368	20	6.8	20	88	1	195	41	23	17	17	1.90
41639--41725	20	4.3	20	83	2	113	43	24	14	17	1.86
41639--41725	40	2.2	40	89	0	129	43	24	14	17	1.86
41650--41787	20	6.8	20	86	3	118	44	18	17	19	1.86
41699--41787	20	4.4	20	90	2	126	42	17	20	19	1.89
41699--41787	41	2.2	40	90	6	135	42	17	20	19	1.89
41217--42052	419	2.0	418	93	0	1431	43	14	11	30	1.80
42137--42207	20	3.5	20	88	1	88	18	19	16	45	1.86
42151--42223	20	3.7	20	92	0	92	20	21	16	41	1.90
42952--42997	22	2.0	23	83	4	58	30	19	13	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47411--47451	18	2.3	18	87	4	57	43	0	2	53	1.13
49399--49431	17	1.9	17	93	0	57	27	12	15	45	1.81
51004--51051	20	2.4	20	75	6	53	22	31	14	31	1.94
57196--57273	24	3.2	24	76	7	86	30	24	21	23	1.99
57207--57285	24	3.3	24	80	0	104	31	22	22	22	1.98
59516--59565	3	16.0	3	82	15	57	36	2	2	60	1.20
63233--63340	20	5.3	20	90	1	126	43	15	22	18	1.87
63246--63352	20	5.3	20	86	3	90	46	14	18	19	1.84
63710--63798	20	4.4	20	84	6	117	19	17	19	43	1.88
63779--63854	40	1.9	40	97	0	143	17	15	23	43	1.87
63771--63846	20	3.8	20	82	0	107	18	17	25	39	1.91
63852--63927	40	1.9	40	86	0	107	28	11	25	34	1.91
64145--64178	16	2.1	17	88	5	52	67	5	5	20	1.33
66891--66955	34	1.9	34	90	0	103	40	23	23	13	1.90
73177--73402	118	1.9	118	85	6	316	55	4	11	28	1.55
76256--76294	21	1.9	20	84	5	51	43	5	0	51	1.24
76690--76740	16	3.2	17	76	18	56	41	0	0	58	0.98
76692--76741	15	3.1	17	80	13	61	44	0	0	56	0.99
76802--76842	19	2.0	22	86	13	61	39	0	2	58	1.11
76793--76840	23	2.0	22	84	15	60	37	0	2	60	1.09
83067--83109	4	11.2	4	85	9	63	51	25	0	23	1.49
83058--83103	22	2.1	22	87	0	65	50	19	0	30	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87991--88051	20	3.0	20	76	11	61	40	11	21	26	1.87
94859--94914	23	2.6	23	86	8	82	28	14	23	33	1.94

Tables:   1

The End!