Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009033.1 Hibiscus syriacus cultivar Beakdansim tig00112434_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110163

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
229--268
16
2.4
16
83
4
53
15
32
10
42
1.79
8835--8879
23
2.0
22
87
8
65
71
0
0
28
0.87
10252--10294
22
2.0
21
86
8
61
46
0
2
51
1.13
21226--21265
21
1.9
21
94
0
71
12
35
22
30
1.91
25646--25690
20
2.2
20
84
0
54
48
0
4
46
1.22
27240--27387
65
2.3
65
79
8
160
31
15
22
30
1.95
35883--36019
65
2.1
65
87
5
197
31
18
22
27
1.97
38550--38588
20
1.9
20
84
5
51
64
15
2
17
1.41
57009--57073
33
2.0
33
96
0
121
32
32
3
32
1.73
61215--61249
12
2.8
12
86
4
52
74
0
8
17
1.06
88576--88606
7
4.4
7
100
0
62
25
29
29
16
1.96
88603--88659
5
10.8
5
77
17
53
7
22
50
19
1.71
88595--88659
21
3.0
21
97
2
121
9
24
47
18
1.77
88656--88734
19
4.2
18
78
16
88
27
29
29
13
1.95
88681--88755
29
2.5
31
89
8
120
29
26
26
17
1.97
88656--88754
9
10.3
9
80
10
90
29
27
28
15
1.96
95906--95943
7
5.4
7
100
0
76
26
28
28
15
1.96
95940--95997
5
10.8
5
78
14
62
6
22
51
18
1.70
95933--95997
22
3.0
22
100
0
130
9
23
49
18
1.76
95994--96072
19
4.2
18
78
16
88
27
29
29
13
1.95
96019--96093
29
2.5
31
89
8
120
29
26
26
17
1.97
95994--96092
9
10.3
9
80
10
90
29
27
28
15
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
98048--98205
78
2.0
78
100
0
316
29
15
2
51
1.57
102714--102751
2
20.0
2
89
10
62
52
0
0
47
1.00
102714--102751
19
2.0
19
100
0
76
52
0
0
47
1.00
102534--102922
189
2.1
190
98
0
746
43
3
15
36
1.66
108684--108752
31
2.2
31
84
0
84
30
20
26
23
1.98

Tables:   1

The End!