Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009034.1 Hibiscus syriacus cultivar Beakdansim tig00112441_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  175383

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2457--2611
44
3.5
43
79
15
158
72
3
6
17
1.19
2626--2666
15
2.5
17
73
11
50
73
0
4
21
1.02
2602--2689
23
3.6
22
70
19
68
68
0
3
28
1.06
3906--3938
14
2.4
14
90
5
50
75
0
3
21
0.93
3994--4170
34
4.9
34
73
15
135
44
5
3
46
1.43
3994--4290
36
8.0
36
71
15
123
43
5
3
47
1.43
4155--4188
2
17.5
2
93
6
61
50
0
0
50
1.00
4115--4286
56
3.0
55
81
11
195
44
4
3
47
1.41
4207--4257
24
2.1
24
89
7
77
47
9
0
43
1.36
4120--4289
60
2.9
57
83
10
195
44
4
3
47
1.41
5001--5049
23
2.1
23
88
0
71
22
16
20
40
1.91
4871--5238
179
2.0
178
87
2
511
24
10
17
47
1.79
5246--5351
35
3.0
35
87
4
142
48
3
3
44
1.38
5296--5400
46
2.3
47
91
3
169
46
2
5
44
1.41
5436--5478
15
3.0
15
80
19
56
25
0
4
69
1.07
5344--5449
33
3.1
34
90
4
169
43
0
5
50
1.32
5436--5492
28
2.0
28
80
12
64
26
1
3
68
1.15
6736--6778
19
2.2
20
91
8
70
25
2
2
69
1.12
7318--7366
23
2.1
23
88
0
71
22
16
20
40
1.91
7334--7379
23
2.0
22
84
12
58
23
15
17
43
1.87
7502--7581
23
3.5
23
75
1
63
31
15
13
40
1.86
8696--8720
12
2.1
12
100
0
50
68
0
0
32
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21908--22093
15
12.6
14
69
19
53
74
1
17
6
1.12
22062--22099
20
1.9
20
89
10
60
81
2
13
2
0.90
22015--22104
18
4.9
17
68
24
58
77
1
15
5
1.00
21961--22093
7
17.4
7
68
24
58
75
1
18
5
1.07
23456--23857
55
7.4
55
89
2
501
27
16
25
30
1.97
23470--23905
110
4.0
107
83
7
421
28
18
24
28
1.98
23546--23905
165
2.2
162
81
6
427
28
18
23
28
1.98
26853--26889
13
2.8
13
91
0
56
24
21
18
35
1.96
37536--37702
60
2.8
59
79
5
192
32
21
6
38
1.79
38178--38212
2
17.5
2
93
0
61
51
2
0
45
1.16
43010--43054
23
2.0
22
86
4
63
31
24
17
26
1.97
47322--47518
6
33.0
6
71
16
52
35
5
2
57
1.32
47476--47520
2
22.5
2
100
0
90
48
0
0
51
1.00
47523--47574
18
2.7
19
81
16
63
21
7
0
71
1.11
47683--47734
17
3.1
16
78
13
52
21
3
1
73
1.10
47718--47769
23
2.2
24
86
3
70
15
11
1
71
1.23
47716--47784
34
2.1
33
83
8
86
18
10
1
69
1.24
58440--58581
79
1.8
78
83
5
182
55
11
21
11
1.66
59471--59876
106
4.0
101
79
12
438
33
24
19
21
1.97
59471--59875
201
2.0
204
85
3
559
34
24
19
21
1.97
61876--61927
23
2.2
24
86
3
70
15
11
1
71
1.23
61874--61942
34
2.1
33
83
8
86
18
10
1
69
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62514--62580
28
2.3
29
80
17
77
38
1
20
38
1.62
62942--63070
31
4.1
31
76
13
111
27
18
20
33
1.96
62992--63081
31
2.9
31
85
1
110
24
18
25
31
1.98
65450--65719
133
2.0
135
96
3
503
38
15
19
26
1.92
69795--69923
60
2.2
60
100
0
258
31
13
25
29
1.94
73107--73423
156
2.0
156
95
0
571
25
22
20
31
1.98
77386--77504
61
2.0
60
85
5
159
34
16
10
37
1.84
78469--78515
2
23.5
2
100
0
94
48
0
0
51
1.00
79552--79643
3
30.7
3
88
0
139
34
3
0
61
1.12
81765--81815
18
2.9
17
72
18
50
25
0
1
72
0.95
81806--81842
15
2.7
15
88
12
53
27
5
5
62
1.39
92419--92483
9
7.2
9
76
11
62
83
0
15
1
0.73
92415--92482
11
5.8
11
79
17
66
82
0
16
1
0.75
92421--92479
25
2.4
24
88
5
91
84
0
13
1
0.69
93286--93392
3
35.7
3
88
0
160
34
3
0
61
1.14
94800--94854
26
2.1
25
80
12
58
47
1
1
49
1.23
95967--96020
27
2.1
27
82
6
67
37
12
11
38
1.79
96120--96178
29
2.1
28
83
3
73
38
18
10
32
1.84
96155--96204
26
1.9
26
87
0
73
40
14
14
32
1.85
101101--101384
137
2.1
137
97
0
543
39
10
26
23
1.87
121803--121863
24
2.6
23
79
7
68
16
11
18
54
1.71
122007--122036
15
2.0
15
100
0
60
13
6
13
66
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
134848--134887
20
2.0
20
95
0
71
20
32
25
22
1.98
134850--134931
21
3.8
22
79
9
89
21
35
24
18
1.96
138667--138713
17
2.9
16
79
20
53
29
0
4
65
1.11
139070--139106
3
12.3
3
100
0
74
35
0
0
64
0.94
140008--140041
13
2.4
14
90
9
52
55
0
0
44
0.99
141351--141415
34
1.9
34
84
3
87
36
24
9
29
1.86
148484--148551
3
24.0
3
86
11
99
64
0
1
33
1.02
148484--148550
11
6.0
11
84
10
91
64
0
1
34
1.03
148484--148551
14
4.6
14
87
10
100
64
0
1
33
1.02
148694--148976
110
2.5
114
87
2
394
24
19
14
42
1.88
149649--149702
20
2.7
20
91
0
90
24
27
27
20
1.99
156985--157094
42
2.6
42
84
2
141
33
21
20
24
1.97
156731--157371
303
2.1
309
87
2
918
34
19
16
28
1.94
158031--158085
22
2.5
22
96
0
101
38
14
10
36
1.81
165197--165247
22
2.4
22
80
9
52
66
0
7
25
1.18
166057--166086
11
2.7
11
100
0
60
66
0
0
33
0.92
170614--170651
20
1.9
20
88
0
58
10
26
36
26
1.89
170634--170694
20
2.9
21
87
7
79
18
26
34
21
1.96

Tables:   1

The End!