genome.fa.s9035.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009035.1 Hibiscus syriacus cultivar Beakdansim tig00112442_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74957

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1451--1490	21	1.9	21	89	0	62	10	25	40	25	1.86
1473--1533	20	2.9	21	87	7	79	18	26	34	21	1.96
7887--7925	19	2.1	19	90	0	60	10	20	35	33	1.86
7958--8080	3	41.0	3	93	3	212	65	0	1	31	1.08
8267--8311	22	2.0	22	86	4	63	28	8	24	37	1.86
8518--8584	30	2.2	31	79	10	77	34	2	16	46	1.62
15083--15128	13	3.7	13	78	18	53	50	0	0	50	1.00
15263--15304	16	2.6	16	88	7	59	64	2	4	28	1.26
17286--17316	3	10.3	3	100	0	62	32	0	0	67	0.91
22432--22712	95	3.0	96	91	2	435	33	18	17	30	1.94
23883--24861	84	11.8	83	77	5	821	30	23	19	26	1.98
23953--24857	249	3.6	248	87	2	1267	30	23	19	26	1.98
27790--27848	26	2.4	26	76	15	63	47	5	1	45	1.34
31140--31205	28	2.4	28	97	0	123	36	10	15	37	1.82
33969--34009	21	1.9	22	90	5	66	53	7	7	31	1.56
37786--37841	23	2.5	23	85	2	78	21	33	21	23	1.97
38329--38361	13	2.5	13	90	9	50	30	18	6	45	1.73
40080--40104	13	1.9	13	100	0	50	40	8	4	48	1.51
44247--44367	64	1.9	64	84	0	161	35	21	16	26	1.94
45062--45104	23	1.9	23	85	4	61	23	27	16	32	1.96
45051--45114	22	2.9	22	72	6	58	21	25	20	32	1.97
51231--51352	64	1.9	64	87	0	181	34	21	18	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51237--51393	64	2.5	64	81	2	163	33	22	18	24	1.97
52010--52070	23	2.7	23	92	0	104	18	26	29	26	1.98
56807--56834	2	14.0	2	100	0	56	50	0	0	50	1.00
58260--58404	61	2.3	63	80	8	170	27	17	27	26	1.98
67148--67225	34	2.3	34	86	6	115	26	12	42	17	1.86
70086--70169	39	2.2	39	84	0	114	19	29	19	32	1.96

Tables:   1

The End!