Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009036.1 Hibiscus syriacus cultivar Beakdansim tig00112443_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1934717
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 9
Found at i:642997 original size:28 final size:28
Alignment explanation
Indices: 642931--642986 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
642921 GAAAAAATGT
642931 GTTAAATATATGTATGAATTTGAGTTTA
1 GTTAAATATATGTATGAATTTGAGTTTA
642959 GTTAAATATATGTATGAATTTGAGTTTA
1 GTTAAATATATGTATGAATTTGAGTTTA
642987 TTGACCAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.46
Consensus pattern (28 bp):
GTTAAATATATGTATGAATTTGAGTTTA
Found at i:645196 original size:25 final size:25
Alignment explanation
Indices: 645168--645250 Score: 85
Period size: 25 Copynumber: 3.1 Consensus size: 25
645158 TTTCGAGAGT
645168 TTATAATTTTGAAATTTTAATTTAA
1 TTATAATTTTGAAATTTTAATTTAA
*
645193 TTATAATTTTGGAAATATTTTTTGATTTAA
1 TTATAATTTT-G-AA-A--TTTTAATTTAA
* * *
645223 TCACAAATTTGAAATTTTAATTTAA
1 TTATAATTTTGAAATTTTAATTTAA
645248 TTA
1 TTA
645251 GTATTATTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
25 22 0.47
26 1 0.02
27 3 0.06
28 3 0.06
29 1 0.02
30 17 0.36
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.53
Consensus pattern (25 bp):
TTATAATTTTGAAATTTTAATTTAA
Found at i:649759 original size:20 final size:20
Alignment explanation
Indices: 649734--649773 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
649724 AGCAACAGAA
*
649734 TAAAAATGATTCTATCTAAT
1 TAAAAATGATCCTATCTAAT
649754 TAAAAATGATCCTATCTAAT
1 TAAAAATGATCCTATCTAAT
649774 AACTAATAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.45, C:0.12, G:0.05, T:0.38
Consensus pattern (20 bp):
TAAAAATGATCCTATCTAAT
Found at i:649816 original size:20 final size:21
Alignment explanation
Indices: 649787--649826 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
649777 TAATAGAATA
*
649787 AAAAACTGATTCTATCTAATT
1 AAAAACTGATCCTATCTAATT
649808 AAAAA-TGATCCTATCTAAT
1 AAAAACTGATCCTATCTAAT
649827 AACTAATAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.45, C:0.15, G:0.05, T:0.35
Consensus pattern (21 bp):
AAAAACTGATCCTATCTAATT
Found at i:649865 original size:20 final size:20
Alignment explanation
Indices: 649840--649878 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
649830 TAATAGAATA
*
649840 AAAACTGATTCTATCTAATT
1 AAAACTGATCCTATCTAATT
649860 AAAACTGATCCTATCTAAT
1 AAAACTGATCCTATCTAAT
649879 ATTTAATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.41, C:0.18, G:0.05, T:0.36
Consensus pattern (20 bp):
AAAACTGATCCTATCTAATT
Found at i:649869 original size:52 final size:52
Alignment explanation
Indices: 649730--649879 Score: 275
Period size: 53 Copynumber: 2.9 Consensus size: 52
649720 AATTAGCAAC
649730 AGAATAAAAA-TGATTCTATCTAATTAAAAATGATCCTATCTAATAACTAAT
1 AGAATAAAAACTGATTCTATCTAATTAAAAATGATCCTATCTAATAACTAAT
649781 AGAATAAAAAACTGATTCTATCTAATTAAAAATGATCCTATCTAATAACTAAT
1 AGAAT-AAAAACTGATTCTATCTAATTAAAAATGATCCTATCTAATAACTAAT
*
649834 AGAATAAAAACTGATTCTATCTAATTAAAACTGATCCTATCTAATA
1 AGAATAAAAACTGATTCTATCTAATTAAAAATGATCCTATCTAATA
649880 TTTAATTTAG
Statistics
Matches: 96, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
51 5 0.05
52 45 0.47
53 46 0.48
ACGTcount: A:0.48, C:0.13, G:0.06, T:0.33
Consensus pattern (52 bp):
AGAATAAAAACTGATTCTATCTAATTAAAAATGATCCTATCTAATAACTAAT
Found at i:650807 original size:14 final size:14
Alignment explanation
Indices: 650790--650826 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
650780 TTATATATAT
650790 ATATATATATGTGC
1 ATATATATATGTGC
650804 ATATATATATGTGC
1 ATATATATATGTGC
650818 ATATATATA
1 ATATATATA
650827 AATGTATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.41, C:0.05, G:0.11, T:0.43
Consensus pattern (14 bp):
ATATATATATGTGC
Found at i:650809 original size:16 final size:16
Alignment explanation
Indices: 650788--650831 Score: 65
Period size: 14 Copynumber: 2.9 Consensus size: 16
650778 ATTTATATAT
650788 ATATATATATATGTGC
1 ATATATATATATGTGC
650804 --ATATATATATGTGC
1 ATATATATATATGTGC
*
650818 ATATATATAAATGT
1 ATATATATATATGT
650832 ATATATACAC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
14 14 0.56
16 11 0.44
ACGTcount: A:0.41, C:0.05, G:0.11, T:0.43
Consensus pattern (16 bp):
ATATATATATATGTGC
Found at i:650835 original size:14 final size:14
Alignment explanation
Indices: 650781--650838 Score: 62
Period size: 14 Copynumber: 4.1 Consensus size: 14
650771 TACTTGTATT
*
650781 TATATATATATATA
1 TATATATGTATATA
* *
650795 TATATGTGCATATA
1 TATATATGTATATA
* *
650809 TATATGTGCATATA
1 TATATATGTATATA
*
650823 TATAAATGTATATA
1 TATATATGTATATA
650837 TA
1 TA
650839 CACACACATA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 38 1.00
ACGTcount: A:0.43, C:0.03, G:0.09, T:0.45
Consensus pattern (14 bp):
TATATATGTATATA
Found at i:662846 original size:28 final size:28
Alignment explanation
Indices: 662806--662870 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
662796 CCAAAAAGGG
662806 GAAAAAGTGCCACTTTTTATAGGCTAAT
1 GAAAAAGTGCCACTTTTTATAGGCTAAT
* *
662834 GGAAAAGTGCCACTTTTTATAGGCTAGT
1 GAAAAAGTGCCACTTTTTATAGGCTAAT
662862 GAAAAAGTG
1 GAAAAAGTG
662871 TGTAATTTCT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.29
Consensus pattern (28 bp):
GAAAAAGTGCCACTTTTTATAGGCTAAT
Found at i:663377 original size:22 final size:22
Alignment explanation
Indices: 663336--663378 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
663326 TTCCTTGGTC
*
663336 TATCCCTAACAGTAAGCATTAA
1 TATCCCTAACAGTAAACATTAA
663358 TATCCCTAATCA-TAAACATTA
1 TATCCCTAA-CAGTAAACATTA
663379 TCACGCAAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.42, C:0.23, G:0.05, T:0.30
Consensus pattern (22 bp):
TATCCCTAACAGTAAACATTAA
Found at i:664984 original size:50 final size:50
Alignment explanation
Indices: 664874--664997 Score: 149
Period size: 50 Copynumber: 2.5 Consensus size: 50
664864 AGCAGTAAAG
* * * * *
664874 CGCGCCCCCTGAACCGCGCTATACGTTGATTTGGTGCCACGTGGGTATAG
1 CGCGCCCCCTGAACCGCGATATACGGTGATCTGGCGCCACGTGGGTATAA
* * **
664924 CGCACTCCCTGCCCCGCGATATACGGTGATCTGGCGCCACGTGGGTATAA
1 CGCGCCCCCTGAACCGCGATATACGGTGATCTGGCGCCACGTGGGTATAA
* *
664974 CGCGCCCCCTGATCCGCGCTATAC
1 CGCGCCCCCTGAACCGCGATATAC
664998 CTGGGTATCT
Statistics
Matches: 60, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
50 60 1.00
ACGTcount: A:0.16, C:0.35, G:0.27, T:0.21
Consensus pattern (50 bp):
CGCGCCCCCTGAACCGCGATATACGGTGATCTGGCGCCACGTGGGTATAA
Found at i:665468 original size:111 final size:111
Alignment explanation
Indices: 665274--665606 Score: 603
Period size: 111 Copynumber: 3.0 Consensus size: 111
665264 TGGAAATCAT
*
665274 ATATCTCTACACTTTGCTGATACAGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTGATACAGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
*
665339 TATTTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
66 TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
665385 ATATCTCGACACTTTGCTGATACAGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTGATACAGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
*
665450 TAATTAGTTGATTTATTTAATGCATGATTATTATATTAAGAATTAA
66 TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
*
665496 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTGATACAGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
* * *
665561 TAATTAGTTGATTTATTTAATACATTATTATTAGAGTAAGAATTAA
66 TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
665607 TTTTTGTAAT
Statistics
Matches: 214, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
111 214 1.00
ACGTcount: A:0.37, C:0.08, G:0.10, T:0.45
Consensus pattern (111 bp):
ATATCTCGACACTTTGCTGATACAGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
Found at i:667134 original size:18 final size:18
Alignment explanation
Indices: 667111--667146 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
667101 CCCAGTAGCC
*
667111 ACCGCAGCCATATATGAT
1 ACCGCAACCATATATGAT
667129 ACCGCAACCATATATGAT
1 ACCGCAACCATATATGAT
667147 GTCGCCATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.28, G:0.14, T:0.22
Consensus pattern (18 bp):
ACCGCAACCATATATGAT
Found at i:669672 original size:50 final size:50
Alignment explanation
Indices: 669594--669720 Score: 191
Period size: 50 Copynumber: 2.5 Consensus size: 50
669584 CCCTAGGTGG
* * *
669594 CGTATAGCGCGGATCAGGGGGCGTGCTATACCCACGTGGCGCCAGATCAC
1 CGTATAGCGCGGATCAGGGGGCGCGCTATACCCACGTGGCGCCAAATCAA
* **
669644 CGTATATCGCGGGGCAGGGGGCGCGCTATACCCACGTGGCGCCAAATCAA
1 CGTATAGCGCGGATCAGGGGGCGCGCTATACCCACGTGGCGCCAAATCAA
*
669694 CGTATAGCGCGGTTCAGGGGGCGCGCT
1 CGTATAGCGCGGATCAGGGGGCGCGCT
669721 TTACTGCTAC
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 68 1.00
ACGTcount: A:0.19, C:0.29, G:0.36, T:0.16
Consensus pattern (50 bp):
CGTATAGCGCGGATCAGGGGGCGCGCTATACCCACGTGGCGCCAAATCAA
Found at i:671418 original size:2 final size:2
Alignment explanation
Indices: 671411--671440 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
671401 TTGAAAAATA
671411 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
671441 TAATTTTAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:674883 original size:4 final size:4
Alignment explanation
Indices: 674874--674908 Score: 54
Period size: 4 Copynumber: 8.8 Consensus size: 4
674864 AAATTAGTAT
674874 TTTA TTTA TTTA TTTA TTATA TTTA -TTA TTTA TTT
1 TTTA TTTA TTTA TTTA TT-TA TTTA TTTA TTTA TTT
674909 TTATTCACTA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 3 0.10
4 22 0.76
5 4 0.14
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:674913 original size:17 final size:17
Alignment explanation
Indices: 674871--674909 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
674861 TTTAAATTAG
674871 TATTTTATTTATTTATT
1 TATTTTATTTATTTATT
*
674888 TATTATATTTA-TTATT
1 TATTTTATTTATTTATT
674904 TATTTT
1 TATTTT
674910 TATTCACTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (17 bp):
TATTTTATTTATTTATT
Found at i:677465 original size:2 final size:2
Alignment explanation
Indices: 677458--677505 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
677448 TTTCTTGCTC
677458 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
677500 AT AT AT
1 AT AT AT
677506 TAAATACACT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:677847 original size:10 final size:10
Alignment explanation
Indices: 677828--677857 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
677818 TATTATATTA
677828 TTATTATTTTT
1 TTATT-TTTTT
677839 TTATTTTTTT
1 TTATTTTTTT
677849 TTATTTTTT
1 TTATTTTTT
677858 GTAGGTCCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 14 0.74
11 5 0.26
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (10 bp):
TTATTTTTTT
Found at i:678479 original size:83 final size:82
Alignment explanation
Indices: 678287--678541 Score: 262
Period size: 84 Copynumber: 3.1 Consensus size: 82
678277 TTCCCTCATT
* * * * *
678287 TCAGCTCCAAGGCACATCATTTGTAGTATAGCTTAAGTCGAGAAGGGCTATCTGC--CAAAGACC
1 TCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGACTAGAAGGGCTATCTCCAACAAAGACC
* *
678350 CTCGAGTTTAATTACAC
66 TTCGAGTTCAATTACAC
* * * * * * * *
678367 TCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTATCAACAAAGA
1 TCAGC-TCCAAGGCACATCATTTGCAGCATAGCTTAAGACTAGAAGGGCTATCT-CCAACAAAGA
* * *
678432 CCTTCGCGTTCAACTACGC
64 CCTTCGAGTTCAATTACAC
* * *
678451 TCAGCTCCAAGGTACATCATTTGCAGCATAGCTTAAGACTAGAAGAGCTATCTGCCAACCGAAGA
1 TCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGACTAGAAGGGCTATCT-CCAA-CAAAGA
*
678516 CCTTCGAGTTCGATTACAC
64 CCTTCGAGTTCAATTACAC
678535 TCAGCTC
1 TCAGCTC
678542 AGAGGCAAAC
Statistics
Matches: 138, Mismatches: 32, Indels: 6
0.78 0.18 0.03
Matches are distributed among these distances:
80 5 0.04
81 38 0.28
82 1 0.01
83 42 0.30
84 52 0.38
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (82 bp):
TCAGCTCCAAGGCACATCATTTGCAGCATAGCTTAAGACTAGAAGGGCTATCTCCAACAAAGACC
TTCGAGTTCAATTACAC
Found at i:679133 original size:5 final size:5
Alignment explanation
Indices: 679123--679157 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
679113 ACAAATATTT
*
679123 TTATA TTATA TTATA TTATA TTTTA TTATTA TTAT
1 TTATA TTATA TTATA TTATA TTATA TTA-TA TTAT
679158 TATTTATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
5 22 0.81
6 5 0.19
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (5 bp):
TTATA
Found at i:679143 original size:23 final size:24
Alignment explanation
Indices: 679117--679169 Score: 69
Period size: 23 Copynumber: 2.3 Consensus size: 24
679107 GGGTCTACAA
679117 ATATTTTTA-TATTA-TATTATATT
1 ATATTTTTATTATTATTATTAT-TT
679140 ATA-TTTTATTATTATTATTATTT
1 ATATTTTTATTATTATTATTATTT
679163 AT-TTTTT
1 ATATTTTT
679170 GTAGGTCCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
22 5 0.19
23 16 0.59
24 6 0.22
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (24 bp):
ATATTTTTATTATTATTATTATTT
Found at i:679825 original size:5 final size:5
Alignment explanation
Indices: 679817--679843 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
679807 TTTTCTTTTG
679817 TTATT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TT
679844 GAAATTTAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:682676 original size:17 final size:15
Alignment explanation
Indices: 682635--682670 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
682625 ATGCCAAACA
682635 AAAAAAACATGTTAC
1 AAAAAAACATGTTAC
*
682650 AAAAAAACATGTTGC
1 AAAAAAACATGTTAC
682665 AAAAAA
1 AAAAAA
682671 TGACATTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.64, C:0.11, G:0.08, T:0.17
Consensus pattern (15 bp):
AAAAAAACATGTTAC
Found at i:683369 original size:110 final size:110
Alignment explanation
Indices: 683198--683921 Score: 1124
Period size: 110 Copynumber: 6.6 Consensus size: 110
683188 GCAAAGAGGC
* * *
683198 GACTGTCAATAAACAGATTTTTCAGTTTCATTCAGAGTCAATTTCAACTCCACAGCAAAGGATAT
1 GACTGTCAACAAACA-ACTTTTCAGTTTCATTCAGAGTCAATTTCAACTTCACAGCAAAGGATAT
** * *
683263 TGGAAACGATACAACAAAAGCTCAACTTCACAGCGAAGGGGCGACT
65 TGGACTCGAGACAACACAAGCTCAACTTCACAGCGAAGGGGCGACT
* *
683309 GACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTCAATTTTAACTTCACAGCGAAGGATATT
1 GACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTCAATTTCAACTTCACAGCAAAGGATATT
* * * *
683374 GGAATCGAGATAACACAAGCTCAACTTCACAACGAAGGGGTGACT
66 GGACTCGAGACAACACAAGCTCAACTTCACAGCGAAGGGGCGACT
* * * *
683419 GACTGTCTACAAACAACTTTTTAGTTTCATTCAGAGTCAATTTCAACTTCACAGCGAATGATATT
1 GACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTCAATTTCAACTTCACAGCAAAGGATATT
683484 GGACTCGAGACAACACAAGCTCAACTTCACAGCGAAGGGGCGACT
66 GGACTCGAGACAACACAAGCTCAACTTCACAGCGAAGGGGCGACT
* * * *
683529 GACTGTCTACAAATAACTTTTCAGTTTCATTTATAGTCAATTTCAACTTCACAGCAAAGGATATT
1 GACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTCAATTTCAACTTCACAGCAAAGGATATT
683594 GGACTCGAGACAACACAAGCTCAACTTCACAGCGAAGGGGCGACT
66 GGACTCGAGACAACACAAGCTCAACTTCACAGCGAAGGGGCGACT
* *
683639 GACTGTCTACAAACAACTTTTCAGTTTCATTCAAAGTCAATTTCAACTTCACAGCAAAGGATATT
1 GACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTCAATTTCAACTTCACAGCAAAGGATATT
*
683704 GGACTCGAGACAACACAAGCTCAACTTCACAGCAAAGGGGCGACT
66 GGACTCGAGACAACACAAGCTCAACTTCACAGCGAAGGGGCGACT
* * * *
683749 GTCTGTTAATAAACAACTTTTCAGTTTTATTCAGAGTCAATTTCAACTTCACAGCAAAGGATATT
1 GACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTCAATTTCAACTTCACAGCAAAGGATATT
* * *
683814 GGACTCGGGACAACACAAGCTCAACTTCACAGAGAAGGGGCGATT
66 GGACTCGAGACAACACAAGCTCAACTTCACAGCGAAGGGGCGACT
* * **
683859 GACTGTCATCAAACAACTTTTTAGTTTCATTCAGAGTCAATTTCAACTTCACAGTGAAGGATA
1 GACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTCAATTTCAACTTCACAGCAAAGGATA
683922 GGAAAATTTG
Statistics
Matches: 566, Mismatches: 47, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
110 552 0.98
111 14 0.02
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.26
Consensus pattern (110 bp):
GACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTCAATTTCAACTTCACAGCAAAGGATATT
GGACTCGAGACAACACAAGCTCAACTTCACAGCGAAGGGGCGACT
Found at i:684904 original size:84 final size:83
Alignment explanation
Indices: 684756--685371 Score: 677
Period size: 84 Copynumber: 7.4 Consensus size: 83
684746 GGAATCGTGC
* * * * * **
684756 CCACCAAAGGCCTTCGAGTTTGACTACGCTCAGTTCCAAAGCACATCATTTACAGTGTAACTTAA
1 CCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAA
* *
684821 GTCGAGAAGAGTTGTCTG
66 GTCGAGAAGGGTTATCTG
* *
684839 CCAACCAAAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAGCTTA
1 CC-ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTA
*
684904 AGTCGAGAAGGGCTATCT-
65 AGTCGAGAAGGGTTATCTG
* * * * * * * * *
684922 --TCCAAAGACCCTCAAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCA
1 CCACCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTA
* *
684985 AGGCTAGAAGGGTTATCTG
65 AGTCGAGAAGGGTTATCTG
* * *
685004 TCACCAAAGACCTTCGAGTTCGACTACGCTCAGGTCCAAGGCACATCATTTGCAACATAACTTAA
1 CCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAA
*
685069 GTCGAGAAGGGTTATCTT
66 GTCGAGAAGGGTTATCTG
* *
685087 CCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGTATAGCTTA
1 CC-ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTA
*
685152 AGTCGAGAAGGGCTATCTG
65 AGTCGAGAAGGGTTATCTG
* * * * * * *
685171 ---CCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCA
1 CCACCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTGCAGCATAACTTA
* * *
685233 AGGCTAGAAGGGTTATTTG
65 AGTCGAGAAGGGTTATCTG
* * * * *
685252 TCACCAAAGACCTTCGCGTTTGACTACGCTCAGCTCCAAGGTACATCATTTGCAGCATAGCTTAA
1 CCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAA
* * * *
685317 GACTAGAAGAGCTATCTG
66 GTCGAGAAGGGTTATCTG
* * *
685335 CCAACCGAAGACCTTCGAGTTCGATTACACTCAGCTC
1 CC-ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTC
685372 AGAGGCAAAC
Statistics
Matches: 443, Mismatches: 79, Indels: 21
0.82 0.15 0.04
Matches are distributed among these distances:
80 54 0.12
81 79 0.18
83 84 0.19
84 226 0.51
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.24
Consensus pattern (83 bp):
CCACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAA
GTCGAGAAGGGTTATCTG
Found at i:685070 original size:164 final size:165
Alignment explanation
Indices: 684758--685371 Score: 682
Period size: 164 Copynumber: 3.7 Consensus size: 165
684748 AATCGTGCCC
* * * * **
684758 ACCAAAGGCCTTCGAGTTTGACTACGCTCAGTTCCAAAGCACATCATTTACAGTGTAACTTAAGT
1 ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTACAGCATAACTTAAGT
* * * *
684823 CGAGAAGAGTTGTCTGCCAACCAAAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCACATCA
66 CGAGAAGAGCTATCTGCCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCA
* *
684888 TTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTT
131 TTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTT
* * * * * * *
684923 -CCAAAGACCCTCAAGTTCGATTACACTCAGCTTCGAGGGCACATCATTTACAGCATAACTCAAG
1 ACCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCCAAGGCACATCATTTACAGCATAACTTAAG
* * * * * * *
684987 GCTAGAAGGGTTATCTGTC-ACCAAAGACCTTCGAGTTCGACTACGCTCAGGTCCAAGGCACATC
65 TCGAGAAGAGCTATCTGCCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATC
*
685051 ATTTGCAACATAACTTAAGTCGAGAAGGGTTATCTT
130 ATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTT
* * *
685087 CCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGTATAGCTTA
1 ---ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTACAGCATAACTTA
* * * * *
685152 AGTCGAGAAGGGCTATCTG----CCAAAGACCCTCGAGTTCGATTACACTCAGCTTCGAGGGCAC
63 AGTCGAGAAGAGCTATCTGCCAACCAAAGACCTTCGAGTTCGACTACACTCAGC-TCCAAGGCAC
* * * * *
685213 ATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATTTGT
127 ATCATTTGCAGCATAACTTAAGTCGAGAAGGGTTATCT-T
* * * * *
685253 CACCAAAGACCTTCGCGTTTGACTACGCTCAGCTCCAAGGTACATCATTTGCAGCATAGCTTAAG
1 -ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTACAGCATAACTTAAG
* * * *
685318 ACTAGAAGAGCTATCTGCCAACCGAAGACCTTCGAGTTCGATTACACTCAGCTC
65 TCGAGAAGAGCTATCTGCCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTC
685372 AGAGGCAAAC
Statistics
Matches: 380, Mismatches: 58, Indels: 20
0.83 0.13 0.04
Matches are distributed among these distances:
164 201 0.53
165 80 0.21
166 1 0.00
167 42 0.11
168 56 0.15
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.24
Consensus pattern (165 bp):
ACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTACAGCATAACTTAAGT
CGAGAAGAGCTATCTGCCAACCAAAGACCTTCGAGTTCGACTACACTCAGCTCCAAGGCACATCA
TTTGCAGCATAACTTAAGTCGAGAAGGGTTATCTT
Found at i:685195 original size:248 final size:248
Alignment explanation
Indices: 684757--685371 Score: 996
Period size: 248 Copynumber: 2.5 Consensus size: 248
684747 GAATCGTGCC
* * * * **
684757 CACCAAAGGCCTTCGAGTTTGACTACGCTCAGTTCCAAAGCACATCATTTACAGTGTAACTTAAG
1 CACCAAAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAG
* *
684822 TCGAGAAGAGTTGTCTGCCAACCAAAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCACATC
66 TCGAGAAGAGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATC
*
684887 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTTCCAAAGACCCTCAAGTTCGATTACACTCA
131 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCAAGTTCGATTACACTCA
684952 GCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGT
196 GCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGT
* * *
685005 CACCAAAGACCTTCGAGTTCGACTACGCTCAGGTCCAAGGCACATCATTTGCAACATAACTTAAG
1 CACCAAAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAG
* *
685070 TCGAGAAGGGTTATCTTCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATC
66 TCGAGAAGAGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATC
* *
685135 ATTTGCAGTATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCGAGTTCGATTACACTCA
131 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCAAGTTCGATTACACTCA
*
685200 GCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATTTGT
196 GCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGT
* * *
685253 CACCAAAGACCTTCGCGTTTGACTACGCTCAGCTCCAAGGTACATCATTTGCAGCATAGCTTAAG
1 CACCAAAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAG
* * * * * *
685318 ACTAGAAGAGCTATCTGCCAACCGAAGACCTTCGAGTTCGATTACACTCAGCTC
66 TCGAGAAGAGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTC
685372 AGAGGCAAAC
Statistics
Matches: 337, Mismatches: 30, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
248 337 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.24
Consensus pattern (248 bp):
CACCAAAGACCTTCGAGTTTGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACTTAAG
TCGAGAAGAGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATC
ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGCCAAAGACCCTCAAGTTCGATTACACTCA
GCTTCGAGGGCACATCATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGT
Found at i:685975 original size:19 final size:19
Alignment explanation
Indices: 685947--685983 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 19
685937 TCTACAAATT
685947 TTTTTATATTA-TATTATA
1 TTTTTATATTATTATTATA
685965 TTTTTATTATTATTATTAT
1 TTTTTA-TATTATTATTAT
685984 TATTATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 5 0.29
20 6 0.35
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (19 bp):
TTTTTATATTATTATTATA
Found at i:685976 original size:3 final size:3
Alignment explanation
Indices: 685953--685995 Score: 56
Period size: 3 Copynumber: 15.3 Consensus size: 3
685943 AATTTTTTTA
*
685953 TAT TA- TAT TA- TAT TTT TAT TAT TAT TAT TAT TAT TAT T-T TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
685996 TATTTTTTGT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
2 6 0.17
3 29 0.83
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TAT
Found at i:686152 original size:36 final size:36
Alignment explanation
Indices: 686111--686189 Score: 149
Period size: 36 Copynumber: 2.2 Consensus size: 36
686101 CACCATTCCA
*
686111 CAACGTCCATAACCTCAACTACCACCACACTCCTAG
1 CAACGTCCATAACCTCAACTACCACCACACTCCCAG
686147 CAACGTCCATAACCTCAACTACCACCACACTCCCAG
1 CAACGTCCATAACCTCAACTACCACCACACTCCCAG
686183 CAACGTC
1 CAACGTC
686190 ATTTCCTCTT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.33, C:0.46, G:0.06, T:0.15
Consensus pattern (36 bp):
CAACGTCCATAACCTCAACTACCACCACACTCCCAG
Found at i:699393 original size:22 final size:20
Alignment explanation
Indices: 699366--699417 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
699356 CCTTGAGGAG
699366 GTATCGATACCCTTGAAGGGTA
1 GTATCGATACCCTT--AGGGTA
* **
699388 GTATCGGTACTGTTAGGGTA
1 GTATCGATACCCTTAGGGTA
699408 GTATCGATAC
1 GTATCGATAC
699418 TTCTAAACAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
20 15 0.58
22 11 0.42
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (20 bp):
GTATCGATACCCTTAGGGTA
Found at i:699969 original size:21 final size:21
Alignment explanation
Indices: 699943--699996 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
699933 AGGGTTTTAA
*
699943 GTGGTCCTTCGGGATAATTAT
1 GTGGTCCTTCGGGATAAATAT
*
699964 GTGGTCCTTCGAGATAAATAT
1 GTGGTCCTTCGGGATAAATAT
699985 GTGG-CACTTCGG
1 GTGGTC-CTTCGG
699997 TGCAAACCTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 1 0.03
21 28 0.97
ACGTcount: A:0.20, C:0.17, G:0.30, T:0.33
Consensus pattern (21 bp):
GTGGTCCTTCGGGATAAATAT
Found at i:700009 original size:23 final size:23
Alignment explanation
Indices: 699982--700042 Score: 88
Period size: 23 Copynumber: 2.7 Consensus size: 23
699972 TCGAGATAAA
699982 TATGTGGCACTTCGGTGCAAACC
1 TATGTGGCACTTCGGTGCAAACC
* *
700005 TATGTGGAACTTCAGTGCAAACC
1 TATGTGGCACTTCGGTGCAAACC
700028 TATGTGGTC-CTTCGG
1 TATGTGG-CACTTCGG
700043 GACTATTATT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (23 bp):
TATGTGGCACTTCGGTGCAAACC
Found at i:707194 original size:39 final size:39
Alignment explanation
Indices: 707114--707802 Score: 956
Period size: 39 Copynumber: 17.7 Consensus size: 39
707104 GTTTTAAGAA
* * ** *
707114 AAACAATCTCAAGTGAGAT-AAATCTTCTGTTTAAAGAG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
*
707152 AAACTATCTCAAGCGAGATAAAATCTTTTGTTTCGAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
* *
707191 AAACTATCTCAAGCGAGATAAAATCTTATGTTTCAAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
* * * * * *
707230 AAACTATCTTAAGAGAGAGAAAAATCTTCTATATCAAGTG
1 AAACTATCTCAAGCGAGA-TAAAATCTTCTGTTTCGAGTG
* * *
707270 AAACTATCTCAAGCGATATAAAATCTTTTGTTTCGAGTA
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
* *
707309 AAACTATCTCAAGCAAGATAAAATCTTATGTTTCGAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
707348 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
*
707387 AAATTATCTCAAGCGAGATAAAAATCTTCTGTTTCGAGTG
1 AAACTATCTCAAGCGAGAT-AAAATCTTCTGTTTCGAGTG
* * *
707427 AAACCATCTAAAGCGAGATAAAATCTTCTGTTTCGAGTA
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
* * * *
707466 AAAATATCTTAAGAGAGATAAAATCTTCTTTTTCGAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
*
707505 AAACTATCTCAAGAGAGATAAAATCTTCTGTTTCGAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
707544 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
* * *
707583 AAACAATCTCAAGC-AGAT-CAATCTTATGTTAT-GAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTT-TCGAGTG
*
707620 AAACTATCTCAAGCGAGATAAAATCTTCTATTTCGAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
707659 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
* * * *
707698 AAACTATCTCAAGAGAGATAAAAATATTCTATTTCGAATG
1 AAACTATCTCAAGCGAGAT-AAAATCTTCTGTTTCGAGTG
* *
707738 AAACTATATCAAGTGAGATAAAATCTTCTGTTTCGAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
*
707777 AAATTATCTCAAGCGAGAT-AAATCTT
1 AAACTATCTCAAGCGAGATAAAATCTT
707803 GTTTTAAAAA
Statistics
Matches: 579, Mismatches: 64, Indels: 16
0.88 0.10 0.02
Matches are distributed among these distances:
37 28 0.05
38 34 0.06
39 415 0.72
40 102 0.18
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (39 bp):
AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
Found at i:707341 original size:118 final size:118
Alignment explanation
Indices: 707128--707802 Score: 889
Period size: 118 Copynumber: 5.8 Consensus size: 118
707118 AATCTCAAGT
* * * * *
707128 GAGATAAATCTTCTGTTTAAAGAGAAACTATCTCAAGCGAGATAAAATCTTTTGTTTCGAGTGAA
1 GAGAAAAATCTTCTATTTCAAGTGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTGAA
* *
707193 ACTATCTCAAGCGAGATAAAATCTTATGTTTCAAGTGAAACTATCTTAAGAGA
66 ACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTGAAACTATCTTAAGAGA
* * * *
707246 GAGAAAAATCTTCTATATCAAGTGAAACTATCTCAAGCGATATAAAATCTTTTGTTTCGAGTAAA
1 GAGAAAAATCTTCTATTTCAAGTGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTGAA
* * * *
707311 ACTATCTCAAGCAAGATAAAATCTTATGTTTCGAGTGAAACTATCTCAAGCGA
66 ACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTGAAACTATCTTAAGAGA
* * * *
707364 GA-TAAAATCTTCTGTTTCGAGTGAAATTATCTCAAGCGAGATAAAAATCTTCTGTTTCGAGTGA
1 GAGAAAAATCTTCTATTTCAAGTGAAACTATCTCAAGCGAGAT-AAAATCTTCTGTTTCGAGTGA
* * * *
707428 AACCATCTAAAGCGAGATAAAATCTTCTGTTTCGAGTAAAAATATCTTAAGAGA
65 AACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTGAAACTATCTTAAGAGA
* * * *
707482 GA-TAAAATCTTCTTTTTCGAGTGAAACTATCTCAAGAGAGATAAAATCTTCTGTTTCGAGTGAA
1 GAGAAAAATCTTCTATTTCAAGTGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTGAA
* *
707546 ACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTGAAACAATC-TCA-AG-
66 ACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTGAAACTATCTTAAGAGA
* ** * * * *
707596 CAGATCAATCTTATGTTAT-GAGTGAAACTATCTCAAGCGAGATAAAATCTTCTATTTCGAGTGA
1 GAGAAAAATCTTCTATT-TCAAGTGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTGA
*
707660 AACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTGAAACTATCTCAAGAGA
65 AACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTGAAACTATCTTAAGAGA
* * * *
707714 GATAAAAATATTCTATTTCGAA-TGAAACTATATCAAGTGAGATAAAATCTTCTGTTTCGAGTGA
1 GAGAAAAATCTTCTATTTC-AAGTGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTGA
*
707778 AATTATCTCAAGCGAGAT-AAATCTT
65 AACTATCTCAAGCGAGATAAAATCTT
707803 GTTTTAAAAA
Statistics
Matches: 490, Mismatches: 59, Indels: 17
0.87 0.10 0.03
Matches are distributed among these distances:
114 1 0.00
115 99 0.20
116 4 0.01
117 106 0.22
118 279 0.57
119 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.31
Consensus pattern (118 bp):
GAGAAAAATCTTCTATTTCAAGTGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTGAA
ACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTGAAACTATCTTAAGAGA
Found at i:707427 original size:157 final size:157
Alignment explanation
Indices: 707114--707802 Score: 969
Period size: 157 Copynumber: 4.4 Consensus size: 157
707104 GTTTTAAGAA
* * **
707114 AAACAATCTCAAGTGAGAT-AAATCTTCTGTTTAAAG-AGAAACTATCTCAAGCGAGATAAAATC
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTA-AAACTATCTCAAGCGAGATAAAATC
* * * *
707177 TTTTGTTTCGAGTGAAACTATCTCAAGCGAGATAAAATCTTATGTTTCAAGTGAAACTATCTTAA
65 TTCTGTTTCGAGTGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTGAAACTATCTCAA
* * *
707242 GAGAGAGAAAAATCTTCTATATCAAGTG
130 GAGAGATAAAAATCTTCTATTTCGAGTG
* * *
707270 AAACTATCTCAAGCGATATAAAATCTTTTGTTTCGAGTAAAACTATCTCAAGCAAGATAAAATCT
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTAAAACTATCTCAAGCGAGATAAAATCT
* *
707335 TATGTTTCGAGTGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTGAAATTATCTCAAG
66 TCTGTTTCGAGTGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTGAAACTATCTCAAG
* *
707400 CGAGATAAAAATCTTCTGTTTCGAGTG
131 AGAGATAAAAATCTTCTATTTCGAGTG
* * * * *
707427 AAACCATCTAAAGCGAGATAAAATCTTCTGTTTCGAGTAAAAATATCTTAAGAGAGATAAAATCT
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTAAAACTATCTCAAGCGAGATAAAATCT
* *
707492 TCTTTTTCGAGTGAAACTATCTCAAGAGAGATAAAATCTTCTGTTTCGAGTGAAACTATCTCAAG
66 TCTGTTTCGAGTGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTGAAACTATCTCAAG
* *
707557 CGAGAT-AAAATCTTCTGTTTCGAGTG
131 AGAGATAAAAATCTTCTATTTCGAGTG
* * * *
707583 AAACAATCTCAAGC-AGAT-CAATCTTATGTTAT-GAGTGAAACTATCTCAAGCGAGATAAAATC
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTT-TCGAGTAAAACTATCTCAAGCGAGATAAAATC
*
707645 TTCTATTTCGAGTGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTGAAACTATCTCAA
65 TTCTGTTTCGAGTGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTGAAACTATCTCAA
* *
707710 GAGAGATAAAAATATTCTATTTCGAATG
130 GAGAGATAAAAATCTTCTATTTCGAGTG
* * * *
707738 AAACTATATCAAGTGAGATAAAATCTTCTGTTTCGAGTGAAATTATCTCAAGCGAGAT-AAATCT
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTAAAACTATCTCAAGCGAGATAAAATCT
707802 T
66 T
707803 GTTTTAAAAA
Statistics
Matches: 477, Mismatches: 49, Indels: 14
0.88 0.09 0.03
Matches are distributed among these distances:
154 105 0.22
155 33 0.07
156 60 0.13
157 278 0.58
158 1 0.00
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (157 bp):
AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTAAAACTATCTCAAGCGAGATAAAATCT
TCTGTTTCGAGTGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTGAAACTATCTCAAG
AGAGATAAAAATCTTCTATTTCGAGTG
Found at i:707901 original size:36 final size:36
Alignment explanation
Indices: 707861--707976 Score: 83
Period size: 36 Copynumber: 3.1 Consensus size: 36
707851 AACTGTCTCA
707861 AGTGAGAAAAATATTGTTTTAAGAAAAATAATCTTG
1 AGTGAGAAAAATATTGTTTTAAGAAAAATAATCTTG
* * * ** **
707897 AGTGA-AATGTAATGTCT-TTTTCGAGTAAAAATTTTCTCA
1 AGTGAGAA--AAATAT-TGTTTT-AAG-AAAAATAATCTTG
* * *
707936 AGTGAGACAAATCTTGTTTTAAGAAAAACAATCTTG
1 AGTGAGAAAAATATTGTTTTAAGAAAAATAATCTTG
707972 AGTGA
1 AGTGA
707977 AATGAAATGT
Statistics
Matches: 57, Mismatches: 16, Indels: 14
0.66 0.18 0.16
Matches are distributed among these distances:
35 2 0.04
36 18 0.32
37 11 0.19
38 11 0.19
39 14 0.25
40 1 0.02
ACGTcount: A:0.41, C:0.08, G:0.17, T:0.34
Consensus pattern (36 bp):
AGTGAGAAAAATATTGTTTTAAGAAAAATAATCTTG
Found at i:708145 original size:77 final size:76
Alignment explanation
Indices: 707768--708185 Score: 533
Period size: 77 Copynumber: 5.5 Consensus size: 76
707758 AAATCTTCTG
* * *
707768 TTTCGAGT-GAAATTATCTCAAGCGAGATAAATCTTGTTTT---AAAAACAATCTTGAGTGAAAT
1 TTTCGAGTAAAAATTGTCTCAAGCGAGACAAATCTTGTTTTAAGAAAAACAATCTTGAGTGAAAT
* *
707829 AAAATATCTTC
66 GAAATGTCTTC
* * * * *
707840 TTTCGAGTAAAAACTGTCTCAAGTGAGAAAAATATTGTTTTAAGAAAAATAATCTTGAGTGAAAT
1 TTTCGAGTAAAAATTGTCTCAAGCGAGACAAATCTTGTTTTAAGAAAAACAATCTTGAGTGAAAT
*
707905 GTAATGTCTT-
66 GAAATGTCTTC
* *
707915 TTTCGAGTAAAAATTTTCTCAAGTGAGACAAATCTTGTTTTAAGAAAAACAATCTTGAGTGAAAT
1 TTTCGAGTAAAAATTGTCTCAAGCGAGACAAATCTTGTTTTAAGAAAAACAATCTTGAGTGAAAT
707980 GAAATGTCTTC
66 GAAATGTCTTC
* * * *
707991 TTTCAAGTAAAAATTGTCTCAAGCGAGATAAATTCTTCTTTTAAGGAAAAACAATCTCGAGTGAA
1 TTTCGAGTAAAAATTGTCTCAAGCGAGACAAA-TCTTGTTTTAA-GAAAAACAATCTTGAGTGAA
*
708056 ATAAAATGTCTTC
64 ATGAAATGTCTTC
* * * *
708069 TTCCGAGTAAAAATTGTCTCAAGCGAGACAAATCTTATTTTAAGAAAAAATAATCTTTAGTGAAA
1 TTTCGAGTAAAAATTGTCTCAAGCGAGACAAATCTTGTTTTAAG-AAAAACAATCTTGAGTGAAA
708134 TGAAATGTCTTC
65 TGAAATGTCTTC
* * *
708146 TTTCAAGTAAAAATTGTCTCAAACGAGGCAATAT-TTGTTT
1 TTTCGAGTAAAAATTGTCTCAAGCGAGACAA-ATCTTGTTT
708186 GGAACTGTTG
Statistics
Matches: 301, Mismatches: 36, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
72 8 0.03
73 26 0.09
75 69 0.23
76 56 0.19
77 80 0.27
78 62 0.21
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (76 bp):
TTTCGAGTAAAAATTGTCTCAAGCGAGACAAATCTTGTTTTAAGAAAAACAATCTTGAGTGAAAT
GAAATGTCTTC
Found at i:709567 original size:7 final size:7
Alignment explanation
Indices: 709549--709652 Score: 171
Period size: 7 Copynumber: 15.3 Consensus size: 7
709539 TCGATTTTCC
709549 TTCTTC-
1 TTCTTCT
709555 TTCTTCT
1 TTCTTCT
709562 TTCTTCT
1 TTCTTCT
709569 TT-TT-T
1 TTCTTCT
709574 TTCTT-T
1 TTCTTCT
709580 TTCTTCT
1 TTCTTCT
709587 TTCTTCT
1 TTCTTCT
709594 TTCTTCT
1 TTCTTCT
709601 TTCTTCT
1 TTCTTCT
709608 TTCTTCT
1 TTCTTCT
709615 TTCTTCT
1 TTCTTCT
709622 TTCTTCT
1 TTCTTCT
709629 TTCTTCT
1 TTCTTCT
709636 TTCTTCT
1 TTCTTCT
709643 TTCTTTCT
1 TTC-TTCT
709651 TT
1 TT
709653 TTTTTTGTTA
Statistics
Matches: 94, Mismatches: 0, Indels: 6
0.94 0.00 0.06
Matches are distributed among these distances:
5 3 0.03
6 16 0.17
7 69 0.73
8 6 0.06
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (7 bp):
TTCTTCT
Found at i:709584 original size:28 final size:28
Alignment explanation
Indices: 709543--709658 Score: 109
Period size: 28 Copynumber: 4.1 Consensus size: 28
709533 ATTTGATCGA
* *
709543 TTTTCCTTCTTCTTCTTCTTTCTTCTTT
1 TTTTTCTTTTTCTTCTTCTTTCTTCTTT
709571 TTTTTC--TTT-TTCTTCTTTCTTC--T
1 TTTTTCTTTTTCTTCTTCTTTCTTCTTT
*
709594 TTCTTCTTTCTTCTTTCTTCTTTCTTCTTT
1 TTTTTCTTT-TTC-TTCTTCTTTCTTCTTT
709624 CTTCTTTCTTCTTTCTTCTTTCTTTCTT-TTT
1 -TT-TTTCTT-TTTCTTC-TTCTTTCTTCTTT
709655 TTTT
1 TTTT
709659 GTTATATCTC
Statistics
Matches: 73, Mismatches: 4, Indels: 21
0.74 0.04 0.21
Matches are distributed among these distances:
23 6 0.08
25 14 0.19
26 4 0.05
28 18 0.25
29 2 0.03
30 3 0.04
31 8 0.11
32 17 0.23
33 1 0.01
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (28 bp):
TTTTTCTTTTTCTTCTTCTTTCTTCTTT
Found at i:715243 original size:13 final size:13
Alignment explanation
Indices: 715206--715236 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
715196 TCTACGAAAA
715206 TCCAAAAATCAGG
1 TCCAAAAATCAGG
715219 TCCAAAAATCAGG
1 TCCAAAAATCAGG
715232 TCCAA
1 TCCAA
715237 GAGTCAGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.45, C:0.26, G:0.13, T:0.16
Consensus pattern (13 bp):
TCCAAAAATCAGG
Found at i:716280 original size:15 final size:15
Alignment explanation
Indices: 716260--716293 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
716250 TTCATTATCC
*
716260 TTATTATTAGTCTTA
1 TTATTATTAGTATTA
716275 TTATTATTAGTATTA
1 TTATTATTAGTATTA
716290 TTAT
1 TTAT
716294 CATTCATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.29, C:0.03, G:0.06, T:0.62
Consensus pattern (15 bp):
TTATTATTAGTATTA
Found at i:723216 original size:35 final size:35
Alignment explanation
Indices: 723153--723293 Score: 128
Period size: 35 Copynumber: 3.9 Consensus size: 35
723143 CTTTAGACGA
**
723153 GAATCGAAAGTGC--TG-TCTCCTTTTGTTCTACTT
1 GAATCGAAAGTGCGATGCT-TCCTTCCGTTCTACTT
723186 GAATCGAAAGTGCGATGCTTCCTTCCGTTCTACTTT
1 GAATCGAAAGTGCGATGCTTCCTTCCGTTCTAC-TT
** *
723222 AGACGAGAATCGAAAGTGTTATGCCTT-CTTTCGTTCTACTT
1 ------GAATCGAAAGTGCGATG-CTTCCTTCCGTTCTACTT
723263 GAATCGAAAGTGCGATGCTTCCTTCCGTTCT
1 GAATCGAAAGTGCGATGCTTCCTTCCGTTCT
723294 GCTAGCAACC
Statistics
Matches: 88, Mismatches: 8, Indels: 22
0.75 0.07 0.19
Matches are distributed among these distances:
33 13 0.15
34 3 0.03
35 38 0.43
36 3 0.03
41 2 0.02
42 26 0.30
43 3 0.03
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.37
Consensus pattern (35 bp):
GAATCGAAAGTGCGATGCTTCCTTCCGTTCTACTT
Found at i:723282 original size:77 final size:76
Alignment explanation
Indices: 723075--723293 Score: 320
Period size: 75 Copynumber: 2.9 Consensus size: 76
723065 ATTCTGTTAT
*
723075 CGAGAATCGAAAGTGCTATGCCTAT-TTTCGTTCTACTTGAATCGAAAGT--GATGCTTTCTTCC
1 CGAGAATCGAAAGTG-TATGCCT-TCTTTCGTTCTACTTGAATCGAAAGTGCGATGCTTCCTTCC
* *
723137 ATTATACTTTAGA
64 GTTCTACTTTAGA
* * * *
723150 CGAGAATCGAAAGTG-CTGTCTCCTTTTGTTCTACTTGAATCGAAAGTGCGATGCTTCCTTCCGT
1 CGAGAATCGAAAGTGTATGCCTTCTTTCGTTCTACTTGAATCGAAAGTGCGATGCTTCCTTCCGT
723214 TCTACTTTAGA
66 TCTACTTTAGA
723225 CGAGAATCGAAAGTGTTATGCCTTCTTTCGTTCTACTTGAATCGAAAGTGCGATGCTTCCTTCCG
1 CGAGAATCGAAAGTG-TATGCCTTCTTTCGTTCTACTTGAATCGAAAGTGCGATGCTTCCTTCCG
723290 TTCT
65 TTCT
723294 GCTAGCAACC
Statistics
Matches: 128, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
73 27 0.21
75 53 0.41
77 48 0.38
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (76 bp):
CGAGAATCGAAAGTGTATGCCTTCTTTCGTTCTACTTGAATCGAAAGTGCGATGCTTCCTTCCGT
TCTACTTTAGA
Found at i:725971 original size:30 final size:30
Alignment explanation
Indices: 725937--726005 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
725927 ACAGCTATAA
725937 ATCACAGCTTTATTTGATAAGCTAAAATGT
1 ATCACAGCTTTATTTGATAAGCTAAAATGT
*
725967 ATCACAGCTTTATTTGATGAGCTAAAATGT
1 ATCACAGCTTTATTTGATAAGCTAAAATGT
725997 ATCACAGCT
1 ATCACAGCT
726006 ATAAATCGCC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (30 bp):
ATCACAGCTTTATTTGATAAGCTAAAATGT
Found at i:729430 original size:22 final size:22
Alignment explanation
Indices: 729405--729446 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
729395 TTAACTTTCA
729405 TTTAGTGTTTGTTTAGAGTTAT
1 TTTAGTGTTTGTTTAGAGTTAT
*
729427 TTTAGTGTTTGTTTATAGTT
1 TTTAGTGTTTGTTTAGAGTT
729447 CGTTTCGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.17, C:0.00, G:0.21, T:0.62
Consensus pattern (22 bp):
TTTAGTGTTTGTTTAGAGTTAT
Found at i:730314 original size:20 final size:21
Alignment explanation
Indices: 730259--730303 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
730249 TGATTATGAA
* * *
730259 AAAATAAAAAGTTTAGATACT
1 AAAATTAATAGTTTAAATACT
*
730280 AAAATTAATATTTTAAATACT
1 AAAATTAATAGTTTAAATACT
730301 AAA
1 AAA
730304 TACATAGTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.33
Consensus pattern (21 bp):
AAAATTAATAGTTTAAATACT
Found at i:731055 original size:20 final size:21
Alignment explanation
Indices: 731030--731122 Score: 100
Period size: 21 Copynumber: 4.5 Consensus size: 21
731020 TTTTCCCAAT
*
731030 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
731050 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
*
731071 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
731091 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
731112 TCGCAATGCGA
1 TCGCAATGCGA
731123 TACTGACTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 27 0.47
21 31 0.53
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:731075 original size:41 final size:41
Alignment explanation
Indices: 731030--731122 Score: 186
Period size: 41 Copynumber: 2.3 Consensus size: 41
731020 TTTTCCCAAT
731030 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
731071 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
731112 TCGCAATGCGA
1 TCGCAATGCGA
731123 TACTGACTAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.17
Consensus pattern (41 bp):
TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
Found at i:731135 original size:41 final size:41
Alignment explanation
Indices: 731049--731183 Score: 132
Period size: 41 Copynumber: 3.3 Consensus size: 41
731039 GAATAAGTAA
* *
731049 ATCGCAACGCGAATTGGGAAAATCGCAATGCGAATA-AGTA-A
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCG-ATACTG-ACT
731090 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
* * ** * * *
731131 ATCGCAATGCGATAAT-AAAAAATCGCAACGAGATACTTACT
1 ATCGCAACGCGA-ATTGGGAAAATCGCAATGCGATACTGACT
*
731172 TTCGCAACGCGA
1 ATCGCAACGCGA
731184 TACTGACTTT
Statistics
Matches: 80, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
40 4 0.05
41 74 0.93
42 2 0.03
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.19
Consensus pattern (41 bp):
ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
Found at i:731136 original size:20 final size:20
Alignment explanation
Indices: 731111--731205 Score: 91
Period size: 20 Copynumber: 4.7 Consensus size: 20
731101 AATTGGGAAA
*
731111 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * * **
731131 ATCGCAATGCGATAATAAAAA
1 ATCGCAACGCGATACT-GACT
* *
731152 ATCGCAACGAGATACTTACT
1 ATCGCAACGCGATACTGACT
*
731172 TTCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
*
731192 TTCGCAACGCGATA
1 ATCGCAACGCGATA
731206 ATACATAATC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 47 0.77
21 14 0.23
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:731420 original size:22 final size:22
Alignment explanation
Indices: 731393--731436 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
731383 CACTCTCTCA
731393 CCCATCTCCGACGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
*
731415 CCCATCTCCGGCGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
731437 TATCTCCATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.45, G:0.16, T:0.18
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:731736 original size:20 final size:20
Alignment explanation
Indices: 731713--731755 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
731703 GATAGTCGAA
731713 TTCGCGTTGCGATTTTCATT
1 TTCGCGTTGCGATTTTCATT
*
731733 TTCGTGTTGCGATTTTCATT
1 TTCGCGTTGCGATTTTCATT
731753 TTC
1 TTC
731756 AGAAACTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.09, C:0.19, G:0.19, T:0.53
Consensus pattern (20 bp):
TTCGCGTTGCGATTTTCATT
Found at i:733093 original size:18 final size:18
Alignment explanation
Indices: 733072--733116 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
733062 TCCACTTCGG
* *
733072 GAGCCATCACTTCGCCCA
1 GAGCCATCACCTCACCCA
*
733090 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
733108 GAGCCATCA
1 GAGCCATCA
733117 TCTGATCGAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.27, C:0.42, G:0.16, T:0.16
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:733649 original size:19 final size:20
Alignment explanation
Indices: 733606--733650 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
733596 CACAACACGA
733606 AAATGACTATCGCAACGCGG
1 AAATGACTATCGCAACGCGG
* *
733626 AAATGGCTATCGCAATGC-G
1 AAATGACTATCGCAACGCGG
733645 AAATGA
1 AAATGA
733651 AAATCGCAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.38, C:0.20, G:0.24, T:0.18
Consensus pattern (20 bp):
AAATGACTATCGCAACGCGG
Found at i:733656 original size:19 final size:18
Alignment explanation
Indices: 733634--733729 Score: 75
Period size: 19 Copynumber: 5.6 Consensus size: 18
733624 GGAAATGGCT
733634 ATCGCAATGCGAAATGAAA
1 ATCGCAA-GCGAAATGAAA
* *
733653 ATCGCAA---AGA-CAAA
1 ATCGCAAGCGAAATGAAA
733667 ATCGCAACGCGAAATG-AA
1 ATCGCAA-GCGAAATGAAA
733685 ATCGCAA-CG-AA--AAA
1 ATCGCAAGCGAAATGAAA
733699 ATCGCAACGCGAAATGAAA
1 ATCGCAA-GCGAAATGAAA
733718 ATCGCAATGCGA
1 ATCGCAA-GCGA
733730 TTTGTGTTTC
Statistics
Matches: 61, Mismatches: 5, Indels: 22
0.69 0.06 0.25
Matches are distributed among these distances:
14 19 0.31
15 4 0.07
16 4 0.07
17 2 0.03
18 11 0.18
19 21 0.34
ACGTcount: A:0.48, C:0.21, G:0.20, T:0.11
Consensus pattern (18 bp):
ATCGCAAGCGAAATGAAA
Found at i:733700 original size:32 final size:33
Alignment explanation
Indices: 733634--733724 Score: 148
Period size: 32 Copynumber: 2.8 Consensus size: 33
733624 GGAAATGGCT
* *
733634 ATCGCAATGCGAAATGAAAATCGCAAAGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAAAGAAAAA
*
733667 ATCGCAACGCGAAATG-AAATCGCAACGAAAAA
1 ATCGCAACGCGAAATGAAAATCGCAAAGAAAAA
733699 ATCGCAACGCGAAATGAAAATCGCAA
1 ATCGCAACGCGAAATGAAAATCGCAA
733725 TGCGATTTGT
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
32 30 0.56
33 24 0.44
ACGTcount: A:0.49, C:0.21, G:0.19, T:0.11
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAAAGAAAAA
Found at i:733702 original size:14 final size:14
Alignment explanation
Indices: 733650--733707 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
733640 ATGCGAAATG
* *
733650 AAAATCGCAAAGAC
1 AAAATCGCAACGAA
733664 AAAATCGCAACGCGAA
1 AAAATCGCAA--CGAA
733680 ATGAAATCGCAACGAA
1 A--AAATCGCAACGAA
733696 AAAATCGCAACG
1 AAAATCGCAACG
733708 CGAAATGAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.52, C:0.22, G:0.17, T:0.09
Consensus pattern (14 bp):
AAAATCGCAACGAA
Found at i:733799 original size:19 final size:19
Alignment explanation
Indices: 733736--733858 Score: 105
Period size: 20 Copynumber: 6.7 Consensus size: 19
733726 GCGATTTGTG
733736 TTTCGCGTTGCGA-TTTCA
1 TTTCGCGTTGCGATTTTCA
733754 TTTCGCGTTGCGA-TTT--
1 TTTCGCGTTGCGATTTTCA
*
733770 TGT--CGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTCA
* ***
733787 TTTCGCATTGCGATAGCCA
1 TTTCGCGTTGCGATTTTCA
**
733806 TTTCCGCGTTGCGATAGTCA
1 TTT-CGCGTTGCGATTTTCA
*
733826 TTTCGCGTTGCGATTTTAA
1 TTTCGCGTTGCGATTTTCA
*
733845 GTTTCGTGTTGCGA
1 -TTTCGCGTTGCGA
733859 AAGTAAACTA
Statistics
Matches: 86, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
14 8 0.09
15 3 0.03
16 2 0.02
17 2 0.02
18 16 0.19
19 26 0.30
20 29 0.34
ACGTcount: A:0.13, C:0.20, G:0.24, T:0.42
Consensus pattern (19 bp):
TTTCGCGTTGCGATTTTCA
Found at i:733856 original size:39 final size:37
Alignment explanation
Indices: 733725--733858 Score: 111
Period size: 39 Copynumber: 3.6 Consensus size: 37
733715 AAAATCGCAA
733725 TGCGATTTGT-GTTTCGCGTTGCGATTTCATTTCGCGT
1 TGCGATTT-TAGTTTCGCGTTGCGATTTCATTTCGCGT
*
733762 TGCGATTTT-G--T--CGTTGCGATTTTCATTTCGCAT
1 TGCGATTTTAGTTTCGCGTTGCGA-TTTCATTTCGCGT
*** *
733795 TGCGATAGCCA-TTTCCGCGTTGCGATAGTCATTTCGCGT
1 TGCGAT-TTTAGTTT-CGCGTTGCGAT-TTCATTTCGCGT
*
733834 TGCGATTTTAAGTTTCGTGTTGCGA
1 TGCGATTTT-AGTTTCGCGTTGCGA
733859 AAGTAAACTA
Statistics
Matches: 76, Mismatches: 10, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
32 8 0.11
33 18 0.24
34 1 0.01
36 3 0.04
37 8 0.11
38 1 0.01
39 34 0.45
40 3 0.04
ACGTcount: A:0.13, C:0.19, G:0.25, T:0.43
Consensus pattern (37 bp):
TGCGATTTTAGTTTCGCGTTGCGATTTCATTTCGCGT
Found at i:735713 original size:14 final size:14
Alignment explanation
Indices: 735694--735729 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
735684 ATTGTTTAAT
735694 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
735708 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
735722 TGATTTGT
1 TGATTTGT
735730 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:735882 original size:14 final size:14
Alignment explanation
Indices: 735836--735889 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 14
735826 CGAAATGGCT
735836 ATCGCAACGAGAAA
1 ATCGCAACGAGAAA
*
735850 ATCGGAATGCGAAATGAAA
1 ATCGCAA--CG--A-GAAA
735869 ATCGCAACGAGAAA
1 ATCGCAACGAGAAA
735883 ATCGCAA
1 ATCGCAA
735890 TGCAATTTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 17 0.52
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.30
ACGTcount: A:0.48, C:0.19, G:0.22, T:0.11
Consensus pattern (14 bp):
ATCGCAACGAGAAA
Found at i:735938 original size:20 final size:20
Alignment explanation
Indices: 735913--735950 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
735903 TCGCATTGCG
*
735913 ATTTTCTCGTTACGATAGCC
1 ATTTTCGCGTTACGATAGCC
*
735933 ATTTTCGCGTTGCGATAG
1 ATTTTCGCGTTACGATAG
735951 TCAAATGAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.21, G:0.21, T:0.39
Consensus pattern (20 bp):
ATTTTCGCGTTACGATAGCC
Found at i:737030 original size:23 final size:24
Alignment explanation
Indices: 737004--737055 Score: 79
Period size: 23 Copynumber: 2.2 Consensus size: 24
736994 GTATTCGAAA
*
737004 TTGATCTTGGTCAATAC-CGGACT
1 TTGATATTGGTCAATACACGGACT
*
737027 TTGATATTGGTCAATACACGGATT
1 TTGATATTGGTCAATACACGGACT
737051 TTGAT
1 TTGAT
737056 GATGTTTCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 16 0.62
24 10 0.38
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGATATTGGTCAATACACGGACT
Found at i:739564 original size:19 final size:19
Alignment explanation
Indices: 739542--739639 Score: 81
Period size: 19 Copynumber: 5.7 Consensus size: 19
739532 GGAAATTACT
739542 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
739561 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
*
739575 ATTGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
**
739594 ATCGCAA--CG--A-GGGA
1 ATCGCAATGCGAAATGAAA
739608 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
739627 ATCGCAACGCGAA
1 ATCGCAATGCGAA
739640 TTTAATTTCG
Statistics
Matches: 60, Mismatches: 9, Indels: 20
0.67 0.10 0.22
Matches are distributed among these distances:
14 18 0.30
15 2 0.03
16 4 0.07
17 4 0.07
18 2 0.03
19 30 0.50
ACGTcount: A:0.44, C:0.18, G:0.24, T:0.13
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:739587 original size:33 final size:33
Alignment explanation
Indices: 739542--739635 Score: 170
Period size: 33 Copynumber: 2.8 Consensus size: 33
739532 GGAAATTACT
739542 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* *
739575 ATTGCAATGCGAAATGAAAATCGCAACGAGGGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
739608 ATCGCAATGCGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
739636 CGAATTTAAT
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 58 1.00
ACGTcount: A:0.44, C:0.18, G:0.24, T:0.14
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:739657 original size:19 final size:20
Alignment explanation
Indices: 739635--739677 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
739625 AAATCGCAAC
739635 GCGAATTT-AATTTCGCGTT
1 GCGAATTTCAATTTCGCGTT
* *
739654 GCGATTTTCATTTTCGCGTT
1 GCGAATTTCAATTTCGCGTT
739674 GCGA
1 GCGA
739678 TTCTCTCGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.16, C:0.19, G:0.23, T:0.42
Consensus pattern (20 bp):
GCGAATTTCAATTTCGCGTT
Found at i:739662 original size:14 final size:14
Alignment explanation
Indices: 739663--739696 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
739653 TGCGATTTTC
739663 ATTTTCGCGTTGCG
1 ATTTTCGCGTTGCG
* *
739677 ATTCTCTCGTTGCG
1 ATTTTCGCGTTGCG
739691 ATTTTC
1 ATTTTC
739697 ATTTCGCATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.09, C:0.24, G:0.21, T:0.47
Consensus pattern (14 bp):
ATTTTCGCGTTGCG
Found at i:739837 original size:14 final size:14
Alignment explanation
Indices: 739818--739854 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
739808 CACCAATTAA
739818 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
739832 ACAAATCACCTTTT
1 ACAAATCAACTTTT
739846 ACAAATCAA
1 ACAAATCAA
739855 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:741274 original size:21 final size:21
Alignment explanation
Indices: 741208--741274 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
741198 GTGAATCGGG
*
741208 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGGGAGGGGA
* * ** * *
741228 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAACGGTGGGAGGGGA
741250 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGA
741271 CTCT
1 CTCT
741275 CGAGGAATGA
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGA
Found at i:741293 original size:42 final size:41
Alignment explanation
Indices: 741208--741330 Score: 104
Period size: 42 Copynumber: 2.9 Consensus size: 41
741198 GTGAATCGGG
* * * * *
741208 CTCTTGAATGGTGGGA-GGGACCTCTTCAACGATGACAGTGGC
1 CTCTTGAACGGTGGGAGGGGA-CTC-TCGAGGATGATAGGGGC
741250 CTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGAGGGGACTCTCGAGG-ATGATAGGGGC
* * * * * *
741292 CTTTTCAACGATAGGAGTGGACTCTTGAGGGATGATAGG
1 CTCTTGAACGGTGGGAGGGGACTCTCGA-GGATGATAGG
741331 CGAGTCGGGC
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
41 4 0.06
42 57 0.85
43 6 0.09
ACGTcount: A:0.23, C:0.17, G:0.37, T:0.24
Consensus pattern (41 bp):
CTCTTGAACGGTGGGAGGGGACTCTCGAGGATGATAGGGGC
Found at i:743409 original size:19 final size:19
Alignment explanation
Indices: 743323--743455 Score: 123
Period size: 20 Copynumber: 7.1 Consensus size: 19
743313 TCTTTTGGTT
* *
743323 GAAATGAAAATCGCAAAGA
1 GAAATGAAAATCGCAACGC
*
743342 GATAATGAGAATCGCAACGC
1 GA-AATGAAAATCGCAACGC
**
743362 GGAAATGACTATCGCAA--C
1 -GAAATGAAAATCGCAACGC
*
743380 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
743396 GAAATGAAAATCGCAACCGC
1 GAAATGAAAATCGCAA-CGC
*
743416 GAAATAAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
* *
743435 GAAATAAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
743454 GA
1 GA
743456 TTTTTGTTTC
Statistics
Matches: 96, Mismatches: 10, Indels: 16
0.79 0.08 0.13
Matches are distributed among these distances:
14 9 0.09
15 1 0.01
16 2 0.02
17 1 0.01
18 2 0.02
19 35 0.36
20 44 0.46
21 2 0.02
ACGTcount: A:0.47, C:0.20, G:0.22, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:743409 original size:33 final size:34
Alignment explanation
Indices: 743348--743412 Score: 105
Period size: 33 Copynumber: 1.9 Consensus size: 34
743338 AAGAGATAAT
**
743348 GAGAATCGCAACGCGGAAATGACTATCGCAACGA
1 GAGAATCGCAACGCGGAAATGAAAATCGCAACGA
743382 GAGAATCGCAACGC-GAAATGAAAATCGCAAC
1 GAGAATCGCAACGCGGAAATGAAAATCGCAAC
743413 CGCGAAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 15 0.52
34 14 0.48
ACGTcount: A:0.42, C:0.23, G:0.25, T:0.11
Consensus pattern (34 bp):
GAGAATCGCAACGCGGAAATGAAAATCGCAACGA
Found at i:743429 original size:53 final size:54
Alignment explanation
Indices: 743331--743433 Score: 129
Period size: 53 Copynumber: 1.9 Consensus size: 54
743321 TTGAAATGAA
* * **
743331 AATCGCAAAGAGATAATGAGAATCGCAACGCGGAAATGACTATCGCAACGAGAG
1 AATCGCAAAGAGATAATGAAAATCGCAACGCGGAAATAAAAATCGCAACGAGAG
* *
743385 AATCGCAACGCGA-AATGAAAATCGCAAC-CGCGAAATAAAAATCGCAACG
1 AATCGCAAAGAGATAATGAAAATCGCAACGCG-GAAATAAAAATCGCAACG
743434 CGAAATAAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
52 2 0.05
53 29 0.69
54 11 0.26
ACGTcount: A:0.45, C:0.21, G:0.22, T:0.12
Consensus pattern (54 bp):
AATCGCAAAGAGATAATGAAAATCGCAACGCGGAAATAAAAATCGCAACGAGAG
Found at i:743487 original size:19 final size:19
Alignment explanation
Indices: 743451--743531 Score: 73
Period size: 19 Copynumber: 4.5 Consensus size: 19
743441 AAAATCGCAA
*
743451 TGCGATTTTTGTTTCGCGT
1 TGCGATTTTTATTTCGCGT
*
743470 TGCGTTTTTTATTTCGCGT
1 TGCGATTTTTATTTCGCGT
*
743489 TGCGA---TTA--TCTCGT
1 TGCGATTTTTATTTCGCGT
**
743503 TGCGATAGTTATTTCCGCGT
1 TGCGATTTTTATTT-CGCGT
743523 TGCGATTTT
1 TGCGATTTT
743532 CATTCTCGAA
Statistics
Matches: 49, Mismatches: 7, Indels: 11
0.73 0.10 0.16
Matches are distributed among these distances:
14 10 0.20
16 3 0.06
17 3 0.06
19 22 0.45
20 11 0.22
ACGTcount: A:0.10, C:0.17, G:0.23, T:0.49
Consensus pattern (19 bp):
TGCGATTTTTATTTCGCGT
Found at i:744113 original size:20 final size:20
Alignment explanation
Indices: 744088--744141 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
744078 GATTTTGTAT
744088 TATCGCATTGCGATAGTAAG
1 TATCGCATTGCGATAGTAAG
*
744108 TATCGCATTGCGATAGTCAG
1 TATCGCATTGCGATAGTAAG
744128 TATCGCATTGCGAT
1 TATCGCATTGCGAT
744142 TTACTTATTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (20 bp):
TATCGCATTGCGATAGTAAG
Found at i:744231 original size:21 final size:21
Alignment explanation
Indices: 744191--744231 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
744181 ATTGTATACC
**
744191 ATCGCAACGCGATTTCCAACT
1 ATCGCAACGCGAAATCCAACT
*
744212 ATCGCAACGCGAAATGCAAC
1 ATCGCAACGCGAAATCCAAC
744232 GCGAATTTGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.32, G:0.17, T:0.17
Consensus pattern (21 bp):
ATCGCAACGCGAAATCCAACT
Found at i:744616 original size:21 final size:21
Alignment explanation
Indices: 744587--744733 Score: 86
Period size: 21 Copynumber: 6.8 Consensus size: 21
744577 TTTCCAAATT
744587 CGTTGCGATAGTCCAAGTTCA
1 CGTTGCGATAGTCCAAGTTCA
* * *
744608 CGTTACGATAGTCGAAGTTCG
1 CGTTGCGATAGTCCAAGTTCA
* *
744629 CGTTGCGATTTATTCCAAGTTCGTTG
1 CGTTGCGA--TAGTCCAAGTTC---A
* *
744655 CGATGCGATTTATTCCAAGTT--
1 CGTTGCGA--TAGTCCAAGTTCA
* *
744676 CGTTGCGATAGTCGAAGTTCG
1 CGTTGCGATAGTCCAAGTTCA
* *
744697 CGTTGCGATTTATTCCAAATTCA
1 CGTTGCGA--TAGTCCAAGTTCA
744720 --TTGCGATAGTCCAA
1 CGTTGCGATAGTCCAA
744734 AATCGCAACG
Statistics
Matches: 102, Mismatches: 15, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
19 16 0.16
21 46 0.45
23 19 0.19
26 21 0.21
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.34
Consensus pattern (21 bp):
CGTTGCGATAGTCCAAGTTCA
Found at i:744664 original size:26 final size:26
Alignment explanation
Indices: 744632--744684 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
744622 AAGTTCGCGT
744632 TGCGATTTATTCCAAGTTCGTTGCGA
1 TGCGATTTATTCCAAGTTCGTTGCGA
744658 TGCGATTTATTCCAAGTTCGTTGCGA
1 TGCGATTTATTCCAAGTTCGTTGCGA
744684 T
1 T
744685 AGTCGAAGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.40
Consensus pattern (26 bp):
TGCGATTTATTCCAAGTTCGTTGCGA
Found at i:744691 original size:68 final size:69
Alignment explanation
Indices: 744598--744726 Score: 215
Period size: 68 Copynumber: 1.9 Consensus size: 69
744588 GTTGCGATAG
* *
744598 TCCAAGTTCACGTTACGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATGCGA
1 TCCAAGTT-ACGTTACGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCATTGCGATGCGA
744663 TTTAT
65 TTTAT
*
744668 TCCAAGTT-CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCATTGCGAT
1 TCCAAGTTACGTTACGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCATTGCGAT
744727 AGTCCAAAAT
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
68 48 0.86
70 8 0.14
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.36
Consensus pattern (69 bp):
TCCAAGTTACGTTACGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCATTGCGATGCGAT
TTAT
Found at i:744707 original size:42 final size:42
Alignment explanation
Indices: 744578--744733 Score: 145
Period size: 42 Copynumber: 3.6 Consensus size: 42
744568 CAACGCGATT
* *
744578 TTCCAAATTCGTTGCGATAGTCCAAGTTCACGTTACGA--TA
1 TTCCAAATTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTA
* * * * *
744618 GTCGAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATGCGATTTA
1 TTCCAAATT--CGTTGCGA--TAGTCCAAGTTC---GCGTTGCGATTTA
* *
744667 TTCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTA
1 TTCCAAATTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTA
*
744709 TTCCAAATTCATTGCGATAGTCCAA
1 TTCCAAATTCGTTGCGATAGTCCAA
744734 AATCGCAACG
Statistics
Matches: 92, Mismatches: 15, Indels: 16
0.75 0.12 0.13
Matches are distributed among these distances:
40 6 0.07
42 42 0.46
44 11 0.12
45 10 0.11
47 14 0.15
49 9 0.10
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.35
Consensus pattern (42 bp):
TTCCAAATTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTA
Found at i:745875 original size:42 final size:42
Alignment explanation
Indices: 745816--745957 Score: 234
Period size: 42 Copynumber: 3.4 Consensus size: 42
745806 GATTTTGGAC
745816 ACTTCGACTATCGCAACGAATTTGGAATAAATCGCAACGCGA
1 ACTTCGACTATCGCAACGAATTTGGAATAAATCGCAACGCGA
* * *
745858 ACTTCAACTACCGCAACGAACTTGGAATAAATCGCAACGCGA
1 ACTTCGACTATCGCAACGAATTTGGAATAAATCGCAACGCGA
*
745900 ACTTGGACTATCGCAACGAATTTGG-A-AAATCGCAACGCGA
1 ACTTCGACTATCGCAACGAATTTGGAATAAATCGCAACGCGA
745940 ACTTCGACTATCGCAACG
1 ACTTCGACTATCGCAACG
745958 CGAACTTGGA
Statistics
Matches: 92, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
40 31 0.34
41 1 0.01
42 60 0.65
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (42 bp):
ACTTCGACTATCGCAACGAATTTGGAATAAATCGCAACGCGA
Found at i:745952 original size:21 final size:21
Alignment explanation
Indices: 745816--745982 Score: 148
Period size: 21 Copynumber: 8.0 Consensus size: 21
745806 GATTTTGGAC
*
745816 ACTTCGACTATCGCAA--CGA
1 ACTTGGACTATCGCAACGCGA
* *
745835 ATTTGGAATAAATCGCAACGCGA
1 ACTTGGACT--ATCGCAACGCGA
** *
745858 ACTTCAACTACCGCAA--CGA
1 ACTTGGACTATCGCAACGCGA
*
745877 ACTTGGAATAAATCGCAACGCGA
1 ACTTGGACT--ATCGCAACGCGA
745900 ACTTGGACTATCGCAA--CGA
1 ACTTGGACTATCGCAACGCGA
* **
745919 ATTTGGAAAATCGCAACGCGA
1 ACTTGGACTATCGCAACGCGA
*
745940 ACTTCGACTATCGCAACGCGA
1 ACTTGGACTATCGCAACGCGA
*
745961 ACTTGGACTATCGCAATGCGA
1 ACTTGGACTATCGCAACGCGA
745982 A
1 A
745983 TATGTAAATC
Statistics
Matches: 116, Mismatches: 22, Indels: 18
0.74 0.14 0.12
Matches are distributed among these distances:
19 31 0.27
21 66 0.57
23 19 0.16
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.20
Consensus pattern (21 bp):
ACTTGGACTATCGCAACGCGA
Found at i:745982 original size:42 final size:41
Alignment explanation
Indices: 745816--745982 Score: 221
Period size: 42 Copynumber: 4.0 Consensus size: 41
745806 GATTTTGGAC
*
745816 ACTTCGACTATCGCAACGAATTTGGAATAAATCGCAACGCGA
1 ACTTCGACTATCGCAACGAACTTGGAAT-AATCGCAACGCGA
* *
745858 ACTTCAACTACCGCAACGAACTTGGAATAAATCGCAACGCGA
1 ACTTCGACTATCGCAACGAACTTGGAAT-AATCGCAACGCGA
* *
745900 ACTTGGACTATCGCAACGAATTTGGAA-AATCGCAACGCGA
1 ACTTCGACTATCGCAACGAACTTGGAATAATCGCAACGCGA
* *
745940 ACTTCGACTATCGCAACGCGAACTTGGACT-ATCGCAATGCGA
1 ACTTCGACTATCGCAA--CGAACTTGGAATAATCGCAACGCGA
745982 A
1 A
745983 TATGTAAATC
Statistics
Matches: 111, Mismatches: 11, Indels: 6
0.87 0.09 0.05
Matches are distributed among these distances:
40 28 0.25
42 83 0.75
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.20
Consensus pattern (41 bp):
ACTTCGACTATCGCAACGAACTTGGAATAATCGCAACGCGA
Found at i:748440 original size:3 final size:3
Alignment explanation
Indices: 748432--748468 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
748422 TCTCTCTGGT
748432 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
748469 ATTTTCTGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:749759 original size:26 final size:26
Alignment explanation
Indices: 749717--749780 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 26
749707 TAGGTTTTGT
* * *
749717 TTTTTTATTATATTTGTATT-TAGTAC
1 TTTTTTATTGTAGTTGT-TTATAGGAC
*
749743 TTTTTTATTGTAGTTGTTTATTGGAC
1 TTTTTTATTGTAGTTGTTTATAGGAC
749769 TTTTTTATTGTA
1 TTTTTTATTGTA
749781 ATTTTTTTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
25 2 0.06
26 31 0.94
ACGTcount: A:0.19, C:0.03, G:0.12, T:0.66
Consensus pattern (26 bp):
TTTTTTATTGTAGTTGTTTATAGGAC
Found at i:749785 original size:13 final size:13
Alignment explanation
Indices: 749743--749787 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
749733 TATTTAGTAC
*
749743 TTTTTTATTGTAG
1 TTTTTTATTGTAA
* * *
749756 TTGTTTATTGGAC
1 TTTTTTATTGTAA
749769 TTTTTTATTGTAA
1 TTTTTTATTGTAA
749782 TTTTTT
1 TTTTTT
749788 TTATTATTTA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.16, C:0.02, G:0.13, T:0.69
Consensus pattern (13 bp):
TTTTTTATTGTAA
Found at i:752308 original size:64 final size:65
Alignment explanation
Indices: 752192--752352 Score: 166
Period size: 64 Copynumber: 2.5 Consensus size: 65
752182 TCGTTTGAAG
* * * ***
752192 GTGTATCGATGCACAGGAAGTGCATCGATGCA-CTCTTTTAAAATAAATACATCGAAAGCAATTC
1 GTGTATCGATGCATAAGTAGTGCATCGATGCATCTCCAATAAAATAAATACATCGAAAGCAATTC
* * *
752256 GTGTATCGATGCATAAGTAGTGCATCGATGCATC-CCAATAATAATACA-ACATCGAATGCATTT
1 GTGTATCGATGCATAAGTAGTGCATCGATGCATCTCCAATAA-AATAAATACATCGAAAGCAATT
*
752319 T
65 C
* * * *
752320 ATGCACCGATGCATCAGTAGTGCATCGATGCAT
1 GTGTATCGATGCATAAGTAGTGCATCGATGCAT
752353 ACCTTCATTA
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
64 75 0.93
65 6 0.07
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (65 bp):
GTGTATCGATGCATAAGTAGTGCATCGATGCATCTCCAATAAAATAAATACATCGAAAGCAATTC
Found at i:753004 original size:31 final size:31
Alignment explanation
Indices: 752966--753051 Score: 145
Period size: 31 Copynumber: 2.8 Consensus size: 31
752956 AGGGTCGAGG
*
752966 GTTTACCTATGTTCTTCGAGACATATGGACC
1 GTTTACCTATGTTCTTCGGGACATATGGACC
* *
752997 GTTTACCTATGTTTTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACC
753028 GTTTACCTATGTTCTTCGGGACAT
1 GTTTACCTATGTTCTTCGGGACAT
753052 GGGCTAATGC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 51 1.00
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.40
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACC
Found at i:756944 original size:64 final size:63
Alignment explanation
Indices: 756876--757032 Score: 174
Period size: 64 Copynumber: 2.4 Consensus size: 63
756866 TTGAAGGTGT
* * **
756876 ATCGATGCACAGGAAGTGCATCAATGCA-CTCTTTTAA-AATAAATACATCGAATGCAATTCATG
1 ATCGATGCACA-GTAGTGCATCGATGCATC-CTAGTAATAATAAA-ACATCGAATGCAATTCATG
756939 C
63 C
* * * *
756940 ATCGATGCATAAGTAGTGCATCGATGCATCCTAGTAATAATACAACATCGAATGCATTTTATGC
1 ATCGATGCA-CAGTAGTGCATCGATGCATCCTAGTAATAATAAAACATCGAATGCAATTCATGC
*
757004 ACCGATGCATCAGTAGTGCATCGATGCAT
1 ATCGATGCA-CAGTAGTGCATCGATGCAT
757033 ACATTCATTA
Statistics
Matches: 80, Mismatches: 10, Indels: 6
0.83 0.10 0.06
Matches are distributed among these distances:
64 73 0.91
65 7 0.09
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.27
Consensus pattern (63 bp):
ATCGATGCACAGTAGTGCATCGATGCATCCTAGTAATAATAAAACATCGAATGCAATTCATGC
Found at i:757684 original size:31 final size:31
Alignment explanation
Indices: 757646--757729 Score: 132
Period size: 32 Copynumber: 2.7 Consensus size: 31
757636 AGGGTCGAGG
757646 GTTTACCTATGTTCTTCGGGACATATGAACT
1 GTTTACCTATGTTCTTCGGGACATATGAACT
* *
757677 GTTTACCTATGTTCTTCGGAAACATATGGACT
1 GTTTACCTATGTTCTTCGG-GACATATGAACT
*
757709 GTTTACCTAGGTTCTTCGGGA
1 GTTTACCTATGTTCTTCGGGA
757730 TCTATGGACT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
31 20 0.42
32 28 0.58
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.38
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGAACT
Found at i:757739 original size:31 final size:31
Alignment explanation
Indices: 757646--757740 Score: 138
Period size: 31 Copynumber: 3.0 Consensus size: 31
757636 AGGGTCGAGG
*
757646 GTTTACCTATGTTCTTCGGGACATATGAACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
*
757677 GTTTACCTATGTTCTTCGGAAACATATGGACT
1 GTTTACCTATGTTCTTCGG-GACATATGGACT
*
757709 GTTTACCTAGGTTCTTCGGGATC-TATGGACT
1 GTTTACCTATGTTCTTCGGGA-CATATGGACT
757740 G
1 G
757741 GTCTTTTGGG
Statistics
Matches: 58, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
31 29 0.50
32 29 0.50
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:763040 original size:22 final size:23
Alignment explanation
Indices: 763001--763045 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
762991 GATAAAATAG
763001 AAATATAATTAAAAAATT-TATA
1 AAATATAATTAAAAAATTATATA
*
763023 AAATAT-ATTATAACAATTATATA
1 AAATATAATTA-AAAAATTATATA
763046 TAAAAAAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 4 0.20
22 12 0.60
23 4 0.20
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (23 bp):
AAATATAATTAAAAAATTATATA
Found at i:763908 original size:20 final size:20
Alignment explanation
Indices: 763833--763909 Score: 84
Period size: 20 Copynumber: 3.9 Consensus size: 20
763823 AACATGTTGA
* *
763833 AATTTGACAAATTCGATTTC
1 AATTTGACAAAATCGGTTTC
* *
763853 AATTTGACAAAA-CCGTTTGG
1 AATTTGACAAAATCGGTTT-C
* *
763873 AAATTAACAAAATCGGTTTC
1 AATTTGACAAAATCGGTTTC
763893 AATTTGACAAAATCGGT
1 AATTTGACAAAATCGGT
763910 AAAGAGTTAC
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
19 4 0.09
20 36 0.80
21 5 0.11
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.32
Consensus pattern (20 bp):
AATTTGACAAAATCGGTTTC
Found at i:764214 original size:196 final size:194
Alignment explanation
Indices: 763879--764474 Score: 868
Period size: 197 Copynumber: 3.0 Consensus size: 194
763869 TTGGAAATTA
* * *
763879 ACAAAATCGGTTTCAATTTGACAAAATCGGTAAAGAGTTACTGGAATTGTTGAAATTTGTATCGA
1 ACAAAATC-GTTTCAATTTGACAAAA-CCGTAAAGAGCTACCGGAATTGTTGAAATTTGTATCGA
* *
763944 TACATTTATAAGTATATGTACCAAAGTATCGATACTTTAGGAATTTAAAAGAATTGAAATAATAA
64 TA-TTTTATAAGTATATGTACCAAAGTATCGATACTTTAGGAATTTAAAAGAATTGAAATAATAG
* * *
764009 CAGCTATAAAGTATCGATACCTTACACACATATATCGATACATGACAATATAACAGGTTGAAATT
128 CGGCTATAAAGTATCGATACCTTACACACATGTATCGATACATGACAATATAACAAGTTGAAATT
764074 TG
193 TG
* * * *
764076 ACAAAATCGATTTCAGTTTGACAAAACCGTAAAGAGCTACCAGAATTGTTGAAAATTGTATCGTT
1 ACAAAATCG-TTTCAATTTGACAAAACCGTAAAGAGCTACCGGAATTGTTGAAATTTGTATCGAT
*
764141 ATGTTTATAAGTATATGTACCAAAGTATCGATACTTTAGGAATTTAAAAGAATTGTAATAATAGC
65 AT-TTTATAAGTATATGTACCAAAGTATCGATACTTTAGGAATTTAAAAGAATTGAAATAATAGC
* * * *
764206 GGCTATAAAGTATCGATACCTTAGACACATGTATCAATACATGACAATATAACAAGTTTAAATCT
129 GGCTATAAAGTATCGATACCTTACACACATGTATCGATACATGACAATATAACAAGTTGAAATTT
764271 G
194 G
* * *
764272 ACAAAACCTGTTTCAATTTGACAAAACCAGTAAATAGCTACCGGAATGGTTGAAATTTGTATCGA
1 ACAAAATC-GTTTCAATTTGACAAAACC-GTAAAGAGCTACCGGAATTGTTGAAATTTGTATCGA
* * *
764337 TACTTTTATAAGTATATGTACCAAAGTATTGGTACTTTAGGAATTTAAAAGAATTGAAATAGTAG
64 TA-TTTTATAAGTATATGTACCAAAGTATCGATACTTTAGGAATTTAAAAGAATTGAAATAATAG
* * * * *
764402 CGTCTATAAAGTGTCGATACCTTATAAACATGTATCGATACATGACAATATAACATGTTGAAATT
128 CGGCTATAAAGTATCGATACCTTACACACATGTATCGATACATGACAATATAACAAGTTGAAATT
764467 TG
193 TG
764469 ACAAAA
1 ACAAAA
764475 CCGGTAAAGC
Statistics
Matches: 358, Mismatches: 36, Indels: 10
0.89 0.09 0.02
Matches are distributed among these distances:
196 178 0.50
197 179 0.50
198 1 0.00
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.31
Consensus pattern (194 bp):
ACAAAATCGTTTCAATTTGACAAAACCGTAAAGAGCTACCGGAATTGTTGAAATTTGTATCGATA
TTTTATAAGTATATGTACCAAAGTATCGATACTTTAGGAATTTAAAAGAATTGAAATAATAGCGG
CTATAAAGTATCGATACCTTACACACATGTATCGATACATGACAATATAACAAGTTGAAATTTG
Found at i:764391 original size:197 final size:195
Alignment explanation
Indices: 763879--764477 Score: 876
Period size: 196 Copynumber: 3.0 Consensus size: 195
763869 TTGGAAATTA
* * * *
763879 ACAAAATCGGTTTCAATTTGACAAAATCGGTAAAGAGTTACTGGAATTGTTGAAATTTGTATCGA
1 ACAAAA-CCGTTTCAATTTGACAAAA-CCGTAAAGAGCTACCGGAATTGTTGAAATTTGTATCGA
* *
763944 TACATTTATAAGTATATGTACCAAAGTATCGATACTTTAGGAATTTAAAAGAATTGAAATAATAA
64 TACTTTTATAAGTATATGTACCAAAGTATCGATACTTTAGGAATTTAAAAGAATTGAAATAATAG
* * *
764009 CAGCTATAAAGTATCGATACCTTACACACATATATCGATACATGACAATATAACAGGTTGAAATT
129 CGGCTATAAAGTATCGATACCTTACACACATGTATCGATACATGACAATATAACAAGTTGAAATT
764074 TG
194 TG
* * * * *
764076 ACAAAATCGATTTCAGTTTGACAAAACCGTAAAGAGCTACCAGAATTGTTGAAAATTGTATCGTT
1 ACAAAACCG-TTTCAATTTGACAAAACCGTAAAGAGCTACCGGAATTGTTGAAATTTGTATCGAT
*
764141 A-TGTTTATAAGTATATGTACCAAAGTATCGATACTTTAGGAATTTAAAAGAATTGTAATAATAG
65 ACT-TTTATAAGTATATGTACCAAAGTATCGATACTTTAGGAATTTAAAAGAATTGAAATAATAG
* * * *
764205 CGGCTATAAAGTATCGATACCTTAGACACATGTATCAATACATGACAATATAACAAGTTTAAATC
129 CGGCTATAAAGTATCGATACCTTACACACATGTATCGATACATGACAATATAACAAGTTGAAATT
764270 TG
194 TG
* *
764272 ACAAAACCTGTTTCAATTTGACAAAACCAGTAAATAGCTACCGGAATGGTTGAAATTTGTATCGA
1 ACAAAACC-GTTTCAATTTGACAAAACC-GTAAAGAGCTACCGGAATTGTTGAAATTTGTATCGA
* * *
764337 TACTTTTATAAGTATATGTACCAAAGTATTGGTACTTTAGGAATTTAAAAGAATTGAAATAGTAG
64 TACTTTTATAAGTATATGTACCAAAGTATCGATACTTTAGGAATTTAAAAGAATTGAAATAATAG
* * * * *
764402 CGTCTATAAAGTGTCGATACCTTATAAACATGTATCGATACATGACAATATAACATGTTGAAATT
129 CGGCTATAAAGTATCGATACCTTACACACATGTATCGATACATGACAATATAACAAGTTGAAATT
764467 TG
194 TG
764469 ACAAAACCG
1 ACAAAACCG
764478 GTAAAGCGCT
Statistics
Matches: 359, Mismatches: 38, Indels: 11
0.88 0.09 0.03
Matches are distributed among these distances:
196 179 0.50
197 179 0.50
198 1 0.00
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.31
Consensus pattern (195 bp):
ACAAAACCGTTTCAATTTGACAAAACCGTAAAGAGCTACCGGAATTGTTGAAATTTGTATCGATA
CTTTTATAAGTATATGTACCAAAGTATCGATACTTTAGGAATTTAAAAGAATTGAAATAATAGCG
GCTATAAAGTATCGATACCTTACACACATGTATCGATACATGACAATATAACAAGTTGAAATTTG
Found at i:766071 original size:199 final size:198
Alignment explanation
Indices: 765555--766516 Score: 1238
Period size: 199 Copynumber: 4.9 Consensus size: 198
765545 GTTGGTATGT
* * * * *
765555 ATACTTTTAATCCAATATGATTCTCAAACAATTTGCATGCAAAATGTATCGATACACATATATAA
1 ATACTTTTATTCCAGTATGCTTCTCAAACAATTTGCACGCAAAATGTATTGATACACATATATAA
* * * *
765620 AGTATTGATACTTGGAATTTC-AGAACATATTACTTTAAAGTAATTGGTAAATTAACAATGTAAA
66 AGTATCGATACTTGAAATTTCGA-AACCTATTACTTTAAAGTAATAGGTAAATTAACAATGTAAA
* * * * *
765684 TGGTAAAAATCTACCAGTATAATGATAAAAGGCGTAAATACCAAGTATCGATACTCATTATATAT
130 TGGTAAAAGTCTACCA-TATAATGATAATAGGCGTAAATACCAAGTATCAATACT-TTTATATAG
765749 GTAT-G
193 GTATCG
* *
765754 TATACTTTTATTCCAGTATGCTTCTCAAACAATTTGCACGCAAAATGTATTCAT--ACATGTATA
1 -ATACTTTTATTCCAGTATGCTTCTCAAACAATTTGCACGCAAAATGTATTGATACACATATATA
*
765817 AAGTATTGATACTTTG-AATTTCGAAACCTATTACTTTAAAGTAATAGGTAAATTAACAATGTAA
65 AAGTATCGATAC-TTGAAATTTCGAAACCTATTACTTTAAAGTAATAGGTAAATTAACAATGTAA
*
765881 ACGGTAAAAGTCTACCGATATAATGATAATAGGCGTAAATACCAAGTATCAATACTTTTATATAG
129 ATGGTAAAAGTCTACC-ATATAATGATAATAGGCGTAAATACCAAGTATCAATACTTTTATATAG
765946 GTATCG
193 GTATCG
* * *
765952 ATACTTTTATTCCAGTATGTTTCTCAAACAATTTGCATGCAAAATGTATTGATACGCATATATAA
1 ATACTTTTATTCCAGTATGCTTCTCAAACAATTTGCACGCAAAATGTATTGATACACATATATAA
766017 AGTATCGATACTTGAAATTTCGAAACCTATTACTTTAAAGTAATAGGTAAATTAACAATGTAAAT
66 AGTATCGATACTTGAAATTTCGAAACCTATTACTTTAAAGTAATAGGTAAATTAACAATGTAAAT
* * *
766082 GGTAAAAATCTACCGATATAATGATAATGGGCGTAAATACCAAGTATCAATACTTTTATATAGAT
131 GGTAAAAGTCTACC-ATATAATGATAATAGGCGTAAATACCAAGTATCAATACTTTTATATAGGT
*
766147 ATAG
195 ATCG
* * * *
766151 ATACTTTTATTCCAATATGCTTCTCAAACTATTTGCACGCAAAATGTATCGATGCACATATATAA
1 ATACTTTTATTCCAGTATGCTTCTCAAACAATTTGCACGCAAAATGTATTGATACACATATATAA
* * *
766216 AGTATCGATACTTGGAATTTCGAAACCTATTACTTTAAAGTAATAGGTAAATAAAAAATGTAAAT
66 AGTATCGATACTTGAAATTTCGAAACCTATTACTTTAAAGTAATAGGTAAATTAACAATGTAAAT
* * *
766281 GATAAAAGTCTACCAATATATTGATAATAGGTGTAAATACCAAG--T--AT-C------------
131 GGTAAAAGTCTACC-ATATAATGATAATAGGCGTAAATACCAAGTATCAATACTTTTATATAGGT
766329 --C-
195 ATCG
*
766330 ATACTTTTATTCCAGTATGCTTCTCAAACAGTTTGCACGCAAAATGTATTGATACACATATATAA
1 ATACTTTTATTCCAGTATGCTTCTCAAACAATTTGCACGCAAAATGTATTGATACACATATATAA
*
766395 AGTATCGATACTT-ATAATTTCGAAACCTATTACTTTAAAGTAATAGGTAAATTAACAATGTACA
66 AGTATCGATACTTGA-AATTTCGAAACCTATTACTTTAAAGTAATAGGTAAATTAACAATGTAAA
* * * * * *
766459 TGGTAAACGTTTTTACCAGTATAATGAAAATAGGTGTAAATATCCAAATATCGATACT
130 TGGTAAAAG--TCTACCA-TATAATGATAATAGGCGTAAATA-CCAAGTATCAATACT
766517 CATATACAAA
Statistics
Matches: 686, Mismatches: 58, Indels: 48
0.87 0.07 0.06
Matches are distributed among these distances:
179 126 0.18
180 1 0.00
181 26 0.04
182 4 0.01
184 1 0.00
186 2 0.00
187 1 0.00
194 1 0.00
195 2 0.00
197 62 0.09
198 118 0.17
199 295 0.43
200 47 0.07
ACGTcount: A:0.40, C:0.14, G:0.13, T:0.34
Consensus pattern (198 bp):
ATACTTTTATTCCAGTATGCTTCTCAAACAATTTGCACGCAAAATGTATTGATACACATATATAA
AGTATCGATACTTGAAATTTCGAAACCTATTACTTTAAAGTAATAGGTAAATTAACAATGTAAAT
GGTAAAAGTCTACCATATAATGATAATAGGCGTAAATACCAAGTATCAATACTTTTATATAGGTA
TCG
Found at i:766536 original size:21 final size:20
Alignment explanation
Indices: 766498--766537 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
766488 ATAGGTGTAA
* *
766498 ATATCCAAATATCGATACTC
1 ATATACAAATATCAATACTC
766518 ATATACAAAGTATCAATACT
1 ATATACAAA-TATCAATACT
766538 TATAATTTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.45, C:0.20, G:0.05, T:0.30
Consensus pattern (20 bp):
ATATACAAATATCAATACTC
Found at i:766720 original size:129 final size:130
Alignment explanation
Indices: 766380--766839 Score: 626
Period size: 131 Copynumber: 3.5 Consensus size: 130
766370 AAAATGTATT
* *
766380 GATACACATATATAAAGTATCGATACTTATAATTTCGAAACCTATTACTTTAAAGTAATAGGTAA
1 GATACTCATATATAAAGTATCGATA-TTATAATTTCGAAACATATTACTTTAAAGTAATAGGTAA
* ** * * *
766445 ATTAACAATGTACATGGTAAACGTTTTTACCAGTATAATGAAAATAGGTGTAAATATCCAAATAT
65 ATTAACAATGCACACAGTAAACGTTTCTACCAGTATAATGAAAATAGGCGTAAATGTCCAAATAT
766510 C
130 C
* * * *
766511 GATACTCATATACAAAGTATCAATACTTATAATTTCAAAACATATTACTTTAAAGTAATAAGTAA
1 GATACTCATATATAAAGTATCGATA-TTATAATTTCGAAACATATTACTTTAAAGTAATAGGTAA
* * *
766576 ATTAACAATACACACAGTAAACGTTTCTA-CTGTTATAATGAAAATAGGCGTAAATGTCCAATTA
65 ATTAACAATGCACACAGTAAACGTTTCTACCAG-TATAATGAAAATAGGCGTAAATGTCCAAATA
766640 TC
129 TC
* *
766642 GATACTCATATATAAAATATTGAT-TTATAATTTCGAAACATATTACTTTAAAGTAATAGGTAAA
1 GATACTCATATATAAAGTATCGATATTATAATTTCGAAACATATTACTTTAAAGTAATAGGTAAA
* *
766706 TTAACAATGCACACA-TGAAACGTTTCTACCAGTATAATAAAAATAGGCGTAAATGTACAAATAT
66 TTAACAATGCACACAGT-AAACGTTTCTACCAGTATAATGAAAATAGGCGTAAATGTCCAAATAT
766770 C
130 C
* *
766771 GATACTTCCATATAT---GTATAGATACTTATAATTTCGAAACCTATTACTTTAAAGTAATAGGT
1 GATAC-T-CATATATAAAGTATCGATA-TTATAATTTCGAAACATATTACTTTAAAGTAATAGGT
766833 AAATTAA
63 AAATTAA
766840 TAACGTACAT
Statistics
Matches: 293, Mismatches: 29, Indels: 15
0.87 0.09 0.04
Matches are distributed among these distances:
128 7 0.02
129 98 0.33
130 48 0.16
131 140 0.48
ACGTcount: A:0.43, C:0.13, G:0.11, T:0.33
Consensus pattern (130 bp):
GATACTCATATATAAAGTATCGATATTATAATTTCGAAACATATTACTTTAAAGTAATAGGTAAA
TTAACAATGCACACAGTAAACGTTTCTACCAGTATAATGAAAATAGGCGTAAATGTCCAAATATC
Found at i:768038 original size:30 final size:30
Alignment explanation
Indices: 767959--768049 Score: 107
Period size: 29 Copynumber: 3.1 Consensus size: 30
767949 ATTAGCTTAT
* *
767959 ATAAGTATTTAAAGTATATTTTTT-G-TAAT
1 ATAAGTATCTAAAGT-TATTTTTTAGTTAAA
*
767988 TTAAGTATCTAAAG-TATTTTTTAGTTAAA
1 ATAAGTATCTAAAGTTATTTTTTAGTTAAA
* *
768017 ATAAGTATCTAAAGTTATTTTTTAATCAAA
1 ATAAGTATCTAAAGTTATTTTTTAGTTAAA
768047 ATA
1 ATA
768050 GGTACATAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 8 0.15
28 1 0.02
29 28 0.53
30 16 0.30
ACGTcount: A:0.41, C:0.03, G:0.09, T:0.47
Consensus pattern (30 bp):
ATAAGTATCTAAAGTTATTTTTTAGTTAAA
Found at i:768064 original size:29 final size:28
Alignment explanation
Indices: 767996--768092 Score: 79
Period size: 30 Copynumber: 3.4 Consensus size: 28
767986 ATTTAAGTAT
* * *
767996 CTAAAGTATTTTTTAGTTAAAATAAGTA
1 CTAAAATATTTTTTAGTCAAAATAGGTA
* *
768024 TCTAAAGTTATTTTTTAATCAAAATAGGTA
1 -CTAAA-ATATTTTTTAGTCAAAATAGGTA
* *
768054 CATAAAATATTTTAT-GTCAAAATAGATA
1 C-TAAAATATTTTTTAGTCAAAATAGGTA
*
768082 CCTAAACTATT
1 -CTAAAATATT
768093 CAAACTTATT
Statistics
Matches: 56, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
28 19 0.34
29 14 0.25
30 23 0.41
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.40
Consensus pattern (28 bp):
CTAAAATATTTTTTAGTCAAAATAGGTA
Found at i:768314 original size:12 final size:12
Alignment explanation
Indices: 768297--768324 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
768287 ATATACTCTA
768297 AATATTTATTTG
1 AATATTTATTTG
768309 AATATTTATTTG
1 AATATTTATTTG
768321 AATA
1 AATA
768325 AACTTTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (12 bp):
AATATTTATTTG
Found at i:768595 original size:39 final size:38
Alignment explanation
Indices: 768551--768663 Score: 129
Period size: 39 Copynumber: 2.9 Consensus size: 38
768541 GTATTCAGGA
* *
768551 CAATGGATAATACTCCAGGAGTGCATGACATCTTTA-GAC
1 CAATGGATAAGACTCCAGGAGTGCA-GACATCTTCATG-C
* * * *
768590 CAATGGATAAGACTCTAAGAGTGCAGACGTCTTCATGT
1 CAATGGATAAGACTCCAGGAGTGCAGACATCTTCATGC
*
768628 TAATGGATAAGACTCCAGGAGTGCACGACATCTTCA
1 CAATGGATAAGACTCCAGGAGTGCA-GACATCTTCA
768664 GGTCATGCAG
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
38 30 0.48
39 32 0.52
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (38 bp):
CAATGGATAAGACTCCAGGAGTGCAGACATCTTCATGC
Found at i:769410 original size:99 final size:102
Alignment explanation
Indices: 769051--769511 Score: 449
Period size: 99 Copynumber: 4.4 Consensus size: 102
769041 TCATTTTTTG
* * *
769051 TTTTTGTT-TTAAATATAAATTAATTAGATTATTTATTTTGATTTTACATATTAAACTATATTGG
1 TTTTTATTATTAAATATAAATTAATTAGACTATTTATTTTGATTTTACAGATTAAACTATATT--
* * * * * * * * *
769115 TAAGTTAGTTT-AAATTTTCGTATAATTTTTAGTGTATTTTTT
64 TGAGTGA-TTTGTAAGTTTAGTTTAA-ATTTA-T-TGTTTTAT
* ** *
769157 GTTTTTATT-TTAAATA-ATAATT-ATTAGACTATTTATTTTGATTTTACATATTAAGTTGTATT
1 -TTTTTATTATTAAATATA-AATTAATTAGACTATTTATTTTGATTTTACAGATTAAACTATATT
* *
769219 TGAGTGATCTTGTAAATTTAGTGTAAATTTTATTGTTTCT-T
64 TGAGTGAT-TTGTAAGTTTAGTTTAAA-TTTATTGTTT-TAT
* **
769260 TTTTTATT-TTAAATATAAATTAATTAGATTATTTATTTTGATTTTTTAGATTAAACTATATTTG
1 TTTTTATTATTAAATATAAATTAATTAGACTATTTATTTTGATTTTACAGATTAAACTATATTTG
*
769324 AGTGGTTTGTAAGTTTAGTTTAAA-TTATT-TTTTAT
66 AGTGATTTGTAAGTTTAGTTTAAATTTATTGTTTTAT
* *
769359 TTTTTATTGAGT-AATATAAATT-ATTAGACTATTTATTTTGATTTTACAGATTAAACCATATTT
1 TTTTTATT-ATTAAATATAAATTAATTAGACTATTTATTTTGATTTTACAGATTAAACTATATTT
769422 GAGTGATTTGGTAAGTTTAGTTTAAATTTTATTGTTTTAT
65 GAGTGATTT-GTAAGTTTAGTTTAAA-TTTATTGTTTTAT
*
769462 TTATTGTTTTAATTTCAAATATAAATTAATTAGACTATTTATTTTGATTT
1 TT-TT-TATT-A-TT-AAATATAAATTAATTAGACTATTTATTTTGATTT
769512 AACTAATTTT
Statistics
Matches: 302, Mismatches: 32, Indels: 38
0.81 0.09 0.10
Matches are distributed among these distances:
98 1 0.00
99 57 0.19
100 31 0.10
101 1 0.00
102 40 0.13
103 55 0.18
104 11 0.04
105 18 0.06
106 38 0.13
107 18 0.06
108 10 0.03
109 22 0.07
ACGTcount: A:0.31, C:0.03, G:0.10, T:0.56
Consensus pattern (102 bp):
TTTTTATTATTAAATATAAATTAATTAGACTATTTATTTTGATTTTACAGATTAAACTATATTTG
AGTGATTTGTAAGTTTAGTTTAAATTTATTGTTTTAT
Found at i:769453 original size:202 final size:207
Alignment explanation
Indices: 769001--769511 Score: 547
Period size: 202 Copynumber: 2.4 Consensus size: 207
768991 AATGATTCGA
* * * *
769001 ATTTGAGTGGTCTGGTAAGTTTAATGTAAATTTTATTGTTTCATTTTTTGTTTTTGTTTTAAATA
1 ATTTGAGTGATTTGGTAAGTTTAGTGTAAATTTTATTGTTTC-----TT-TTTTTATTTTAAATA
* *
769066 TAAATTAATTAGATTATTTATTTTGATTTTACATATTAAACTATATTGGTAAGTTAGTTTAAATT
60 TAAATTAATTAGATTATTTATTTTGATTTTACAGATTAAACTATATT-GTAAGTTAGTTTAAAGT
* * * *
769131 TTCGTATAATTTTTAGTGTATTTTTTGTTTTTATTTTAAATAATAATTATTAGACTATTTATTTT
124 TTAGTATAA-TATTAGTGTATTTTATGTTTTTATTGTAAATAATAATTATTAGACTATTTATTTT
* ****
769196 GATTTTACATATTAAGTTGT
188 GATTTTACAGATTAAACCAT
*
769216 ATTTGAGTGATCTT-GTAAATTTAGTGTAAATTTTATTGTTTCTTTTTTTATTTTAAATATAAAT
1 ATTTGAGTGAT-TTGGTAAGTTTAGTGTAAATTTTATTGTTTCTTTTTTTATTTTAAATATAAAT
** * * *
769280 TAATTAGATTATTTATTTTGATTTTTTAGATTAAACTATATT-TGAG-TGGTTTGTAAGTTTAGT
65 TAATTAGATTATTTATTTTGATTTTACAGATTAAACTATATTGTAAGTTAGTTT-AAAGTTTAGT
*
769343 TTAA-ATTA-T-T-TTTTAT-TTTTTATTG-AGTAAT-ATAAATTATTAGACTATTTATTTTGAT
129 ATAATATTAGTGTATTTTATGTTTTTATTGTA--AATAAT-AATTATTAGACTATTTATTTTGAT
769401 TTTACAGATTAAACCAT
191 TTTACAGATTAAACCAT
* * *
769418 ATTTGAGTGATTTGGTAAGTTTAGTTTAAATTTTATTGTTTTATTTATTGTTTTAATTTCAAATA
1 ATTTGAGTGATTTGGTAAGTTTAGTGTAAATTTTATTG--TT-TCT-TT-TTTT-ATTTTAAATA
*
769483 TAAATTAATTAGACTATTTATTTTGATTT
60 TAAATTAATTAGATTATTTATTTTGATTT
769512 AACTAATTTT
Statistics
Matches: 257, Mismatches: 27, Indels: 31
0.82 0.09 0.10
Matches are distributed among these distances:
200 1 0.00
201 12 0.05
202 77 0.30
203 1 0.00
204 3 0.01
205 5 0.02
206 7 0.03
207 17 0.07
208 37 0.14
209 58 0.23
210 2 0.01
215 36 0.14
216 1 0.00
ACGTcount: A:0.30, C:0.03, G:0.11, T:0.55
Consensus pattern (207 bp):
ATTTGAGTGATTTGGTAAGTTTAGTGTAAATTTTATTGTTTCTTTTTTTATTTTAAATATAAATT
AATTAGATTATTTATTTTGATTTTACAGATTAAACTATATTGTAAGTTAGTTTAAAGTTTAGTAT
AATATTAGTGTATTTTATGTTTTTATTGTAAATAATAATTATTAGACTATTTATTTTGATTTTAC
AGATTAAACCAT
Found at i:771578 original size:23 final size:23
Alignment explanation
Indices: 771552--771601 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
771542 TTGTATTTTA
*
771552 ATTAAT-ATTAAATAAATATTGAT
1 ATTAATCA-TAAAGAAATATTGAT
* *
771575 ATTATTCATATAGAAATATTGAT
1 ATTAATCATAAAGAAATATTGAT
771598 ATTA
1 ATTA
771602 TTCACATTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 22 0.96
24 1 0.04
ACGTcount: A:0.48, C:0.02, G:0.06, T:0.44
Consensus pattern (23 bp):
ATTAATCATAAAGAAATATTGAT
Found at i:771662 original size:27 final size:27
Alignment explanation
Indices: 771632--771709 Score: 138
Period size: 27 Copynumber: 2.9 Consensus size: 27
771622 ACATCAAAAA
*
771632 ATATTCATCACATTCATTCAAATATTG
1 ATATTAATCACATTCATTCAAATATTG
*
771659 ATATAAATCACATTCATTCAAATATTG
1 ATATTAATCACATTCATTCAAATATTG
771686 ATATTAATCACATTCATTCAAATA
1 ATATTAATCACATTCATTCAAATA
771710 ACATCAACAA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.42, C:0.17, G:0.03, T:0.38
Consensus pattern (27 bp):
ATATTAATCACATTCATTCAAATATTG
Found at i:773145 original size:10 final size:10
Alignment explanation
Indices: 773130--773196 Score: 53
Period size: 10 Copynumber: 6.1 Consensus size: 10
773120 CATTTAAATG
773130 ATAAACGAAC
1 ATAAACGAAC
773140 ATAAACGAAC
1 ATAAACGAAC
*
773150 GTAATAAATGAAC
1 ---ATAAACGAAC
*
773163 GTAAACGAAC
1 ATAAACGAAC
*
773173 ATAATAAATGAAC
1 ---ATAAACGAAC
773186 ATAAACGAAC
1 ATAAACGAAC
773196 A
1 A
773197 CAATAAACGA
Statistics
Matches: 45, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
10 28 0.62
13 17 0.38
ACGTcount: A:0.58, C:0.15, G:0.12, T:0.15
Consensus pattern (10 bp):
ATAAACGAAC
Found at i:773162 original size:13 final size:13
Alignment explanation
Indices: 773140--773208 Score: 51
Period size: 13 Copynumber: 5.8 Consensus size: 13
773130 ATAAACGAAC
773140 ATAAACGAACGTA
1 ATAAACGAACGTA
*
773153 ATAAATGAACG--
1 ATAAACGAACGTA
*
773164 -TAAACGAACATA
1 ATAAACGAACGTA
*
773176 ATAAATGAAC---
1 ATAAACGAACGTA
**
773186 ATAAACGAACACA
1 ATAAACGAACGTA
773199 ATAAACGAAC
1 ATAAACGAAC
773209 AACACAAACA
Statistics
Matches: 45, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
10 17 0.38
13 28 0.62
ACGTcount: A:0.58, C:0.16, G:0.12, T:0.14
Consensus pattern (13 bp):
ATAAACGAACGTA
Found at i:773162 original size:23 final size:23
Alignment explanation
Indices: 773130--773209 Score: 115
Period size: 23 Copynumber: 3.5 Consensus size: 23
773120 CATTTAAATG
*
773130 ATAAACGAACATAAACGAACGTA
1 ATAAACGAACATAAACGAACATA
* *
773153 ATAAATGAACGTAAACGAACATA
1 ATAAACGAACATAAACGAACATA
* *
773176 ATAAATGAACATAAACGAACACA
1 ATAAACGAACATAAACGAACATA
773199 ATAAACGAACA
1 ATAAACGAACA
773210 ACACAAACAC
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.59, C:0.16, G:0.11, T:0.14
Consensus pattern (23 bp):
ATAAACGAACATAAACGAACATA
Found at i:773209 original size:13 final size:13
Alignment explanation
Indices: 773164--773209 Score: 53
Period size: 13 Copynumber: 3.8 Consensus size: 13
773154 TAAATGAACG
*
773164 TAAACGAACATAA
1 TAAACGAACACAA
*
773177 TAAATG-A-AC-A
1 TAAACGAACACAA
773187 TAAACGAACACAA
1 TAAACGAACACAA
773200 TAAACGAACA
1 TAAACGAACA
773210 ACACAAACAC
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
10 6 0.22
11 2 0.07
12 3 0.11
13 16 0.59
ACGTcount: A:0.61, C:0.17, G:0.09, T:0.13
Consensus pattern (13 bp):
TAAACGAACACAA
Found at i:775397 original size:23 final size:24
Alignment explanation
Indices: 775353--775400 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
775343 ACTAATGACG
* *
775353 AAAAATTAAATTTATGATTAAAAT
1 AAAAATTAAATTAATGACTAAAAT
*
775377 AAAAA-TAAATTAATTACTAAAAT
1 AAAAATTAAATTAATGACTAAAAT
775400 A
1 A
775401 TTATTAATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 16 0.76
24 5 0.24
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (24 bp):
AAAAATTAAATTAATGACTAAAAT
Found at i:775481 original size:31 final size:31
Alignment explanation
Indices: 775440--775499 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
775430 AAAGTTACAA
*
775440 AAAATGTAAATATATTAACAATTTTTTTATC
1 AAAATGTAAATATATTAACAATATTTTTATC
*
775471 AAAATTTAAATATATTAACAATATTTTTA
1 AAAATGTAAATATATTAACAATATTTTTA
775500 ACATTTTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (31 bp):
AAAATGTAAATATATTAACAATATTTTTATC
Found at i:775564 original size:47 final size:47
Alignment explanation
Indices: 775495--775589 Score: 163
Period size: 47 Copynumber: 2.0 Consensus size: 47
775485 TTAACAATAT
*
775495 TTTTAACATTTTTAATAAAAATACTAAATCAAATGTTGATCTAATTA
1 TTTTAACATTTTTAATAAAAATACTAAATCAAATGTTGATCAAATTA
* *
775542 TTTTAACATTTTTACTAGAAATACTAAATCAAATGTTGATCAAATTA
1 TTTTAACATTTTTAATAAAAATACTAAATCAAATGTTGATCAAATTA
775589 T
1 T
775590 ACCAATGACG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.43, C:0.09, G:0.05, T:0.42
Consensus pattern (47 bp):
TTTTAACATTTTTAATAAAAATACTAAATCAAATGTTGATCAAATTA
Found at i:775697 original size:33 final size:32
Alignment explanation
Indices: 775659--775720 Score: 106
Period size: 33 Copynumber: 1.9 Consensus size: 32
775649 AAACATTGCC
775659 AAAAATGTAAATATATTAACAATAATTTTTTAT
1 AAAAATGTAAATATATTAACAAT-ATTTTTTAT
*
775692 AAAAATGTTAATATATTAACAATATTTTT
1 AAAAATGTAAATATATTAACAATATTTTT
775721 CATCTAATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
32 6 0.21
33 22 0.79
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (32 bp):
AAAAATGTAAATATATTAACAATATTTTTTAT
Found at i:775872 original size:23 final size:24
Alignment explanation
Indices: 775845--775900 Score: 87
Period size: 23 Copynumber: 2.4 Consensus size: 24
775835 TTATTGAAGT
775845 TATTATTTATCGTCATTATAA-TA
1 TATTATTTATCGTCATTATAATTA
*
775868 TATTATTTTTCGTCATTATAATTA
1 TATTATTTATCGTCATTATAATTA
*
775892 TATTTTTTA
1 TATTATTTA
775901 ACATTTCTAC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 20 0.69
24 9 0.31
ACGTcount: A:0.30, C:0.07, G:0.04, T:0.59
Consensus pattern (24 bp):
TATTATTTATCGTCATTATAATTA
Found at i:775905 original size:21 final size:23
Alignment explanation
Indices: 775858--775905 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 23
775848 TATTTATCGT
**
775858 CATTATAATATATTATTTTTCGT
1 CATTATAATATATTATTTTTCAA
*
775881 CATTATAAT-TA-TATTTTTTAA
1 CATTATAATATATTATTTTTCAA
775902 CATT
1 CATT
775906 TCTACTACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 11 0.50
22 2 0.09
23 9 0.41
ACGTcount: A:0.33, C:0.08, G:0.02, T:0.56
Consensus pattern (23 bp):
CATTATAATATATTATTTTTCAA
Found at i:777303 original size:23 final size:22
Alignment explanation
Indices: 777271--777333 Score: 81
Period size: 23 Copynumber: 2.8 Consensus size: 22
777261 ACTCGTAAGC
*
777271 TACCAAAAGACAAAGAAAAATG
1 TACCAAAAGACAGAGAAAAATG
*
777293 TACCACAAAGACAGAGATAAATG
1 TACCA-AAAGACAGAGAAAAATG
*
777316 TATCATAAAGACAGAGAA
1 TACCA-AAAGACAGAGAA
777334 CATGTTATAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
22 5 0.14
23 30 0.86
ACGTcount: A:0.57, C:0.14, G:0.16, T:0.13
Consensus pattern (22 bp):
TACCAAAAGACAGAGAAAAATG
Done.