Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009036.1 Hibiscus syriacus cultivar Beakdansim tig00112443_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1934717
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 9
Found at i:777345 original size:20 final size:23
Alignment explanation
Indices: 777276--777348 Score: 80
Period size: 23 Copynumber: 3.3 Consensus size: 23
777266 TAAGCTACCA
* * * *
777276 AAAGACAAAGAAAAATGTACCAC
1 AAAGACAGAGATAAATGTATCAT
777299 AAAGACAGAGATAAATGTATCAT
1 AAAGACAGAGATAAATGTATCAT
*
777322 AAAGACAGAGA-ACATGT-T-AT
1 AAAGACAGAGATAAATGTATCAT
777342 AAAGACA
1 AAAGACA
777349 TAATTATTTT
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
20 9 0.20
21 1 0.02
22 5 0.11
23 30 0.67
ACGTcount: A:0.56, C:0.12, G:0.16, T:0.15
Consensus pattern (23 bp):
AAAGACAGAGATAAATGTATCAT
Found at i:786974 original size:14 final size:14
Alignment explanation
Indices: 786955--787015 Score: 104
Period size: 14 Copynumber: 4.4 Consensus size: 14
786945 CGCTGGGCAT
786955 CCGAGGCCATCCGA
1 CCGAGGCCATCCGA
*
786969 CCGAGGTCATCCGA
1 CCGAGGCCATCCGA
786983 CCGAGGCCATCCGA
1 CCGAGGCCATCCGA
786997 CCGAGGCCATCCGA
1 CCGAGGCCATCCGA
*
787011 ACGAG
1 CCGAG
787016 CTATCCGAGG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 44 1.00
ACGTcount: A:0.23, C:0.39, G:0.30, T:0.08
Consensus pattern (14 bp):
CCGAGGCCATCCGA
Found at i:786995 original size:28 final size:28
Alignment explanation
Indices: 786955--787023 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
786945 CGCTGGGCAT
*
786955 CCGAGGCCATCCGACCGAGGTCATCCGA
1 CCGAGGCCATCCGACCGAGGCCATCCGA
786983 CCGAGGCCATCCGACCGAGGCCATCCGA
1 CCGAGGCCATCCGACCGAGGCCATCCGA
* *
787011 ACGA-GCTATCCGA
1 CCGAGGCCATCCGA
787024 GGCCATGCAC
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 8 0.21
28 30 0.79
ACGTcount: A:0.23, C:0.39, G:0.28, T:0.10
Consensus pattern (28 bp):
CCGAGGCCATCCGACCGAGGCCATCCGA
Found at i:787116 original size:14 final size:14
Alignment explanation
Indices: 787094--787168 Score: 59
Period size: 14 Copynumber: 5.4 Consensus size: 14
787084 CCTCGCATAG
*
787094 CTCGTTCGGATGGC
1 CTCGGTCGGATGGC
787108 CTCGGTCGGATGGC
1 CTCGGTCGGATGGC
787122 CTCGGATGCTCGGAT-G-
1 CTC-G--G-TCGGATGGC
* *
787138 CT--TTCGGATGAC
1 CTCGGTCGGATGGC
787150 CTCGGTCGGATGGC
1 CTCGGTCGGATGGC
787164 CTCGG
1 CTCGG
787169 ATGCCCAGCG
Statistics
Matches: 48, Mismatches: 5, Indels: 16
0.70 0.07 0.23
Matches are distributed among these distances:
10 6 0.12
12 2 0.04
14 29 0.60
15 1 0.02
16 2 0.04
17 2 0.04
18 6 0.12
ACGTcount: A:0.09, C:0.28, G:0.37, T:0.25
Consensus pattern (14 bp):
CTCGGTCGGATGGC
Found at i:787244 original size:29 final size:29
Alignment explanation
Indices: 787211--787268 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
787201 GCAATCTCTT
787211 GTAGGTCG-CCGGGAAGACATGGCGACCTA
1 GTAGGTCGTCC-GGAAGACATGGCGACCTA
*
787240 GTAGGTCGTCCGGAAGGCATGGCGACCTA
1 GTAGGTCGTCCGGAAGACATGGCGACCTA
787269 CGGCCAACAC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 25 0.93
30 2 0.07
ACGTcount: A:0.22, C:0.24, G:0.38, T:0.16
Consensus pattern (29 bp):
GTAGGTCGTCCGGAAGACATGGCGACCTA
Found at i:788443 original size:36 final size:35
Alignment explanation
Indices: 788391--788459 Score: 111
Period size: 36 Copynumber: 1.9 Consensus size: 35
788381 TCACCGATTT
*
788391 AGGTTTCATAAGAAATTTGAGTATTTTTCTTATTAA
1 AGGTTTCATAAAAAATTTGAGTA-TTTTCTTATTAA
*
788427 AGGTTTCATAAAAAATTTGGGTATTTTCTTATT
1 AGGTTTCATAAAAAATTTGAGTATTTTCTTATT
788460 GAAGATTAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
35 10 0.32
36 21 0.68
ACGTcount: A:0.32, C:0.06, G:0.14, T:0.48
Consensus pattern (35 bp):
AGGTTTCATAAAAAATTTGAGTATTTTCTTATTAA
Found at i:805389 original size:21 final size:21
Alignment explanation
Indices: 805365--805429 Score: 94
Period size: 21 Copynumber: 3.1 Consensus size: 21
805355 CATATAAATT
* *
805365 GTGTATCAATGCACTGCTATA
1 GTGTATCGATGCACTGCTACA
*
805386 GTGTATCGATGCACTGTTACA
1 GTGTATCGATGCACTGCTACA
*
805407 GTGTACCGATGCACTGCTACA
1 GTGTATCGATGCACTGCTACA
805428 GT
1 GT
805430 AATTTTTGCA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.31
Consensus pattern (21 bp):
GTGTATCGATGCACTGCTACA
Found at i:806272 original size:31 final size:31
Alignment explanation
Indices: 806137--806275 Score: 185
Period size: 31 Copynumber: 4.5 Consensus size: 31
806127 TCATAGATTA
* * *
806137 CGAAGAATC-TAGATAAACAATTCATATGT-C
1 CGAAGAA-CATAGGTAAACAGTCCATATGTCC
*
806167 CGAAGAACATAGATAAACAGTCCATATGTCC
1 CGAAGAACATAGGTAAACAGTCCATATGTCC
806198 CGAAGAACATAGGTAAACAGTCCATATGTCC
1 CGAAGAACATAGGTAAACAGTCCATATGTCC
* *
806229 TGACA-AACATAGGTAAACAGTCTATATGTCC
1 CGA-AGAACATAGGTAAACAGTCCATATGTCC
806260 CGAAGAACATAGGTAA
1 CGAAGAACATAGGTAA
806276 CCCTCGACTC
Statistics
Matches: 99, Mismatches: 6, Indels: 7
0.88 0.05 0.06
Matches are distributed among these distances:
29 1 0.01
30 26 0.26
31 71 0.72
32 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.22
Consensus pattern (31 bp):
CGAAGAACATAGGTAAACAGTCCATATGTCC
Found at i:806492 original size:59 final size:59
Alignment explanation
Indices: 806383--806498 Score: 135
Period size: 59 Copynumber: 2.0 Consensus size: 59
806373 ATATCATTTC
* * * * *
806383 TCTTATAAACACATATCTCTTCTTTTCTGTCACGTATCACATGTACGTGTAATCATTGA
1 TCTTATAAACACATATCTCTTCTTTTCTCTCACATACCACATATACGTGTAAACATTGA
* * * *
806442 TCTTATAATCACATATTTCTT-TTCTTCTCTCACATACCATATATATGTGTAAACATT
1 TCTTATAAACACATATCTCTTCTT-TTCTCTCACATACCACATATACGTGTAAACATT
806499 ATTTCATATC
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
58 2 0.04
59 45 0.96
ACGTcount: A:0.28, C:0.22, G:0.07, T:0.43
Consensus pattern (59 bp):
TCTTATAAACACATATCTCTTCTTTTCTCTCACATACCACATATACGTGTAAACATTGA
Found at i:806572 original size:14 final size:14
Alignment explanation
Indices: 806555--806588 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
806545 CATATAAACT
806555 TACATATATTCATA
1 TACATATATTCATA
806569 TACATATATTCATA
1 TACATATATTCATA
806583 TACATA
1 TACATA
806589 CTTACATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (14 bp):
TACATATATTCATA
Found at i:806596 original size:14 final size:14
Alignment explanation
Indices: 806555--806598 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
806545 CATATAAACT
*
806555 TACATATATTCATA
1 TACATATATACATA
*
806569 TACATATATTCATA
1 TACATATATACATA
806583 TACATACT-TACATA
1 TACATA-TATACATA
806597 TA
1 TA
806599 TTTCGTGTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
14 27 0.96
15 1 0.04
ACGTcount: A:0.43, C:0.16, G:0.00, T:0.41
Consensus pattern (14 bp):
TACATATATACATA
Found at i:817497 original size:23 final size:24
Alignment explanation
Indices: 817457--817506 Score: 77
Period size: 23 Copynumber: 2.1 Consensus size: 24
817447 CAAAGCATTC
817457 AAACACAAATATCCAAAACATCCA
1 AAACACAAATATCCAAAACATCCA
817481 AAACAC-AA-ATCCAAAAACATCCA
1 AAACACAAATATCC-AAAACATCCA
817504 AAA
1 AAA
817507 TGTTTTAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
22 4 0.16
23 15 0.60
24 6 0.24
ACGTcount: A:0.62, C:0.28, G:0.00, T:0.10
Consensus pattern (24 bp):
AAACACAAATATCCAAAACATCCA
Found at i:825092 original size:17 final size:19
Alignment explanation
Indices: 825051--825092 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
825041 AGGAGCGTAG
*
825051 GTGTATCGGTACACTATCAA
1 GTGTATCGATACAC-ATCAA
825071 GTGTATCGATACAC-TC-A
1 GTGTATCGATACACATCAA
825088 GTGTA
1 GTGTA
825093 AAATTAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 6 0.29
18 2 0.10
20 13 0.62
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (19 bp):
GTGTATCGATACACATCAA
Found at i:827636 original size:24 final size:24
Alignment explanation
Indices: 827590--827634 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
827580 TACTTTCGTT
*
827590 TTTCTTTATTTTTATTTACAAAGC
1 TTTCTTTATTTTTATTTAAAAAGC
827614 TTTCTTTATTTTT-TTTAAAAA
1 TTTCTTTATTTTTATTTAAAAA
827635 AGTTAAGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.27, C:0.09, G:0.02, T:0.62
Consensus pattern (24 bp):
TTTCTTTATTTTTATTTAAAAAGC
Found at i:834600 original size:31 final size:32
Alignment explanation
Indices: 834534--834603 Score: 83
Period size: 31 Copynumber: 2.2 Consensus size: 32
834524 TCTGGAGATT
* *
834534 ATAGGT-AACTTGTCCATATGTCCCAAAGAAC
1 ATAGGTAAACTTGTCCATATATCCCAAAGAAA
*
834565 ATAGGTAAAC-TGTCCATATATCTCGAAA-AAA
1 ATAGGTAAACTTGTCCATATATC-CCAAAGAAA
834596 ATAGGTAA
1 ATAGGTAA
834604 CCCTTGACTC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
31 27 0.79
32 7 0.21
ACGTcount: A:0.41, C:0.17, G:0.16, T:0.26
Consensus pattern (32 bp):
ATAGGTAAACTTGTCCATATATCCCAAAGAAA
Found at i:836240 original size:22 final size:22
Alignment explanation
Indices: 836215--836270 Score: 94
Period size: 22 Copynumber: 2.5 Consensus size: 22
836205 CTCAATCTAT
836215 TTATGTATTTTCTCTCATTCGA
1 TTATGTATTTTCTCTCATTCGA
836237 TTATGTATTTTCTCTCATTCGA
1 TTATGTATTTTCTCTCATTCGA
* *
836259 TTCTGCATTTTC
1 TTATGTATTTTC
836271 CTTTGACCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.16, C:0.20, G:0.09, T:0.55
Consensus pattern (22 bp):
TTATGTATTTTCTCTCATTCGA
Found at i:841756 original size:16 final size:16
Alignment explanation
Indices: 841735--841767 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
841725 CACGTGAGGA
841735 TTATTT-TCTTCTTATT
1 TTATTTATCTT-TTATT
841751 TTATTTATCTTTTATT
1 TTATTTATCTTTTATT
841767 T
1 T
841768 ACTGTTTTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.76
Consensus pattern (16 bp):
TTATTTATCTTTTATT
Found at i:848140 original size:19 final size:21
Alignment explanation
Indices: 848103--848145 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
848093 TAACTTTTTC
848103 TTTTATCTTTCATTATTAA-T
1 TTTTATCTTTCATTATTAACT
*
848123 TTTTCTCTTTCATT-TTAACT
1 TTTTATCTTTCATTATTAACT
848143 TTT
1 TTT
848146 ACCTTTTATC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.19, C:0.14, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTTATCTTTCATTATTAACT
Found at i:848151 original size:19 final size:20
Alignment explanation
Indices: 848102--848151 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
848092 TTAACTTTTT
*
848102 CTTTTATCTTTCATTATTAA
1 CTTTTACCTTTCATTATTAA
*
848122 -TTTTTCTCTTTCATT-TTAA
1 CTTTTAC-CTTTCATTATTAA
848141 CTTTTACCTTT
1 CTTTTACCTTT
848152 TATCTTTCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
19 12 0.48
20 13 0.52
ACGTcount: A:0.18, C:0.18, G:0.00, T:0.64
Consensus pattern (20 bp):
CTTTTACCTTTCATTATTAA
Found at i:852002 original size:16 final size:16
Alignment explanation
Indices: 851966--851999 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
851956 CACGTGAGGA
851966 TTATTTTCTTCTTATT
1 TTATTTTCTTCTTATT
*
851982 TTATTTATCTTTTTATT
1 TTATTT-TCTTCTTATT
851999 T
1 T
852000 ATTGTTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.76
Consensus pattern (16 bp):
TTATTTTCTTCTTATT
Found at i:852359 original size:31 final size:31
Alignment explanation
Indices: 852321--852380 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
852311 ACGCAACACC
* *
852321 TATCCATATGTCCCGAAGGACATAGGTAAAT
1 TATCCATATATCCCGAAAGACATAGGTAAAT
*
852352 TATCCATATATCTCGAAAGACATAGGTAA
1 TATCCATATATCCCGAAAGACATAGGTAA
852381 CCCTCGACTC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (31 bp):
TATCCATATATCCCGAAAGACATAGGTAAAT
Found at i:859087 original size:23 final size:23
Alignment explanation
Indices: 859060--859118 Score: 118
Period size: 23 Copynumber: 2.6 Consensus size: 23
859050 CTCGTATAAA
859060 ATGCACCGAAGTGTCACGTAGAG
1 ATGCACCGAAGTGTCACGTAGAG
859083 ATGCACCGAAGTGTCACGTAGAG
1 ATGCACCGAAGTGTCACGTAGAG
859106 ATGCACCGAAGTG
1 ATGCACCGAAGTG
859119 CCGTGTAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.31, C:0.22, G:0.31, T:0.17
Consensus pattern (23 bp):
ATGCACCGAAGTGTCACGTAGAG
Found at i:870928 original size:3 final size:3
Alignment explanation
Indices: 870920--870947 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
870910 GAGATAACAC
870920 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
870948 TCCAATTTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:872310 original size:48 final size:48
Alignment explanation
Indices: 872239--872330 Score: 150
Period size: 48 Copynumber: 1.9 Consensus size: 48
872229 CTTTAAAAAA
*
872239 TTTTATACCAGTTTCTAATTAGTTT-ATCATGATTATAAAATAATGAAG
1 TTTTATACCAGTTTCTAATTAGTTTGA-CATGATAATAAAATAATGAAG
*
872287 TTTTATATCAGTTTCTAATTAGTTTGACATGATAATAAAATAAT
1 TTTTATACCAGTTTCTAATTAGTTTGACATGATAATAAAATAAT
872331 ATTTCTTCCG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
48 40 0.98
49 1 0.02
ACGTcount: A:0.38, C:0.08, G:0.10, T:0.45
Consensus pattern (48 bp):
TTTTATACCAGTTTCTAATTAGTTTGACATGATAATAAAATAATGAAG
Found at i:876413 original size:21 final size:20
Alignment explanation
Indices: 876382--876469 Score: 70
Period size: 23 Copynumber: 4.1 Consensus size: 20
876372 TTTAACAGAA
*
876382 CCCTAGGGGGGTATCGATTC
1 CCCTAGGGGGGAATCGATTC
*
876402 CCCTATGGGGGGAATCGGTTC
1 CCCTA-GGGGGGAATCGATTC
* *
876423 CCCTTCAAAGGGGGAATCGGTTC
1 CCC-T--AGGGGGGAATCGATTC
876446 CCTCATGAGGGGGG-ATCGATTC
1 CC-C-T-AGGGGGGAATCGATTC
876468 CC
1 CC
876470 TCTGCACCAA
Statistics
Matches: 56, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
20 5 0.09
21 16 0.29
22 10 0.18
23 22 0.39
24 3 0.05
ACGTcount: A:0.17, C:0.26, G:0.34, T:0.23
Consensus pattern (20 bp):
CCCTAGGGGGGAATCGATTC
Found at i:876471 original size:22 final size:22
Alignment explanation
Indices: 876388--876471 Score: 75
Period size: 22 Copynumber: 3.8 Consensus size: 22
876378 AGAACCCTAG
*
876388 GGGGGTATCGATTCCC-CTATG-
1 GGGGGAATCGATTCCCTC-ATGA
* *
876409 GGGGGAATCGGTTCCCCTTCA-AA
1 GGGGGAATCGATT-CCC-TCATGA
*
876432 GGGGGAATCGGTTCCCTCATGA
1 GGGGGAATCGATTCCCTCATGA
*
876454 GGGGGGATCGATTCCCTC
1 GGGGGAATCGATTCCCTC
876472 TGCACCAAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
21 14 0.27
22 23 0.44
23 14 0.27
24 1 0.02
ACGTcount: A:0.17, C:0.25, G:0.35, T:0.24
Consensus pattern (22 bp):
GGGGGAATCGATTCCCTCATGA
Found at i:888502 original size:18 final size:18
Alignment explanation
Indices: 888481--888521 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
888471 AAATTTGTTC
888481 AAATA-ATTAAATATAAAA
1 AAATATATTAAA-ATAAAA
*
888499 AAATATATTATAATAAAA
1 AAATATATTAAAATAAAA
888517 AAATA
1 AAATA
888522 GTTTTACCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (18 bp):
AAATATATTAAAATAAAA
Found at i:893067 original size:14 final size:16
Alignment explanation
Indices: 893044--893076 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
893034 AAAGTAGGTA
893044 TTTTATTAAAGT-ACT
1 TTTTATTAAAGTAACT
893059 TTTTA-TAAAGTAACT
1 TTTTATTAAAGTAACT
893074 TTT
1 TTT
893077 ACTTTATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.33, C:0.06, G:0.06, T:0.55
Consensus pattern (16 bp):
TTTTATTAAAGTAACT
Found at i:900643 original size:41 final size:43
Alignment explanation
Indices: 900553--900648 Score: 117
Period size: 41 Copynumber: 2.3 Consensus size: 43
900543 TATTTTTCAC
** *
900553 CTTTATAATTGAGGTCCTAATATTATTCAATCTAACTTTTTAT
1 CTTTATAATTGAAATCCTAATATTATTCAATCTAACTTTTTAA
* *
900596 CTTTATAATTGAAATCCCTAATTTTA-T-AATCTCAC-TTTTAA
1 CTTTATAATTGAAAT-CCTAATATTATTCAATCTAACTTTTTAA
900637 CTTTATAATTGA
1 CTTTATAATTGA
900649 GGCTTTTAAG
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
41 17 0.36
42 7 0.15
43 14 0.30
44 9 0.19
ACGTcount: A:0.32, C:0.15, G:0.05, T:0.48
Consensus pattern (43 bp):
CTTTATAATTGAAATCCTAATATTATTCAATCTAACTTTTTAA
Found at i:900667 original size:85 final size:82
Alignment explanation
Indices: 900503--900763 Score: 242
Period size: 85 Copynumber: 3.1 Consensus size: 82
900493 GGACCCCCAT
* * *
900503 TTTTTCATCTTTATAATTAGGTCCTTAATTTTTTAAATCTTATTTTTCACCTTTATAATTGAGG-
1 TTTTT-ATCTTTATAATTAAGTCCCTAA-TTTTTAAATCTCA-TTTT-ACCTTTATAATTGAGGC
* * *
900567 TCCTAATATTATTCAATCTAAC
62 TCTTAAT-TTTTTCAATCTCAC
* *
900589 TTTTTATCTTTATAATTGAAATCCCTAA-TTTTATAATCTCACTTTTAACTTTATAATTGAGGCT
1 TTTTTATCTTTATAATT-AAGTCCCTAATTTTTA-AATCTCA-TTTTACCTTTATAATTGAGGCT
*
900653 TTTAAGTTTTTTCAATCTCAC
63 CTTAA-TTTTTTCAATCTCAC
* * * * *
900674 TTTCTACCTTT-TCAATTAAGGCTTCTAAGTTTTTCAATCTCGATTTCTACCTTTATAATTGAGG
1 TTTTTATCTTTAT-AATTAAGTC-CCTAA-TTTTTAAATCTC-ATTT-TACCTTTATAATTGAGG
900738 CTCTTAATTTTTT-AATCTCAC
61 CTCTTAATTTTTTCAATCTCAC
900759 TTTTT
1 TTTTT
900764 TAACTTTCTA
Statistics
Matches: 146, Mismatches: 19, Indels: 21
0.78 0.10 0.11
Matches are distributed among these distances:
84 24 0.16
85 67 0.46
86 28 0.19
87 27 0.18
ACGTcount: A:0.26, C:0.16, G:0.07, T:0.51
Consensus pattern (82 bp):
TTTTTATCTTTATAATTAAGTCCCTAATTTTTAAATCTCATTTTACCTTTATAATTGAGGCTCTT
AATTTTTTCAATCTCAC
Found at i:900685 original size:22 final size:22
Alignment explanation
Indices: 900660--900727 Score: 54
Period size: 22 Copynumber: 3.1 Consensus size: 22
900650 GCTTTTAAGT
900660 TTTTTCAATCTCACTTTCTACC
1 TTTTTCAATCTCACTTTCTACC
* **
900682 -TTTTCAAT-TAAGGC-TTCTAAG
1 TTTTTCAATCTCA--CTTTCTACC
900703 TTTTTCAATCTCGA-TTTCTACC
1 TTTTTCAATCTC-ACTTTCTACC
900725 TTT
1 TTT
900728 ATAATTGAGG
Statistics
Matches: 34, Mismatches: 6, Indels: 12
0.65 0.12 0.23
Matches are distributed among these distances:
20 2 0.06
21 13 0.38
22 17 0.50
23 1 0.03
24 1 0.03
ACGTcount: A:0.21, C:0.24, G:0.06, T:0.50
Consensus pattern (22 bp):
TTTTTCAATCTCACTTTCTACC
Found at i:900707 original size:43 final size:44
Alignment explanation
Indices: 900511--900810 Score: 227
Period size: 43 Copynumber: 7.0 Consensus size: 44
900501 ATTTTTTCAT
* * * *
900511 CTTTATAATT-AGG-TCCTTAA-TTTTTTAAATCTTA-TTTTTCAC
1 CTTTATAATTGAGGCT-CTTAAGTTTTTTCAATCTCACTTTCT-AA
* * * * *
900553 CTTTATAATTGAGG-TCCTAA-TATTATTCAATCTAACTTTTTAT
1 CTTTATAATTGAGGCTCTTAAGT-TTTTTCAATCTCACTTTCTAA
** * *
900596 CTTTATAATTGA-AATCCCTAA-TTTTAT-AATCTCACTTT-TAA
1 CTTTATAATTGAGGCT-CTTAAGTTTTTTCAATCTCACTTTCTAA
* *
900637 CTTTATAATTGAGGCTTTTAAGTTTTTTCAATCTCACTTTCTAC
1 CTTTATAATTGAGGCTCTTAAGTTTTTTCAATCTCACTTTCTAA
* *
900681 CTTT-TCAATTAAGGCT-TCTAAG-TTTTTCAATCTCGA-TTTCTAC
1 CTTTAT-AATTGAGGCTCT-TAAGTTTTTTCAATCTC-ACTTTCTAA
*
900724 CTTTATAATTGAGGCTCTTAA-TTTTTT-AATCTCACTTTTTTAA
1 CTTTATAATTGAGGCTCTTAAGTTTTTTCAATCTCAC-TTTCTAA
* * *
900767 CTTTCTAATTGAGGCCCTTAAGTTTTTTTAATCTCACTTTCTAA
1 CTTTATAATTGAGGCTCTTAAGTTTTTTCAATCTCACTTTCTAA
900811 TTGAGGCTCC
Statistics
Matches: 216, Mismatches: 23, Indels: 36
0.79 0.08 0.13
Matches are distributed among these distances:
41 18 0.08
42 37 0.17
43 108 0.50
44 45 0.21
45 8 0.04
ACGTcount: A:0.26, C:0.17, G:0.07, T:0.50
Consensus pattern (44 bp):
CTTTATAATTGAGGCTCTTAAGTTTTTTCAATCTCACTTTCTAA
Found at i:900806 original size:36 final size:36
Alignment explanation
Indices: 900766--900838 Score: 105
Period size: 36 Copynumber: 2.0 Consensus size: 36
900756 CACTTTTTTA
*
900766 ACTTTCTAATTGAGGC-CCTTAAG-TTTTTTTAATCTC
1 ACTTTCTAATTGAGGCTCC-TAAGAATTTTTT-ATCTC
900802 ACTTTCTAATTGAGGCTCCTAAGAATTTTTTATCTC
1 ACTTTCTAATTGAGGCTCCTAAGAATTTTTTATCTC
900838 A
1 A
900839 ATTATACCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
36 26 0.76
37 8 0.24
ACGTcount: A:0.25, C:0.19, G:0.11, T:0.45
Consensus pattern (36 bp):
ACTTTCTAATTGAGGCTCCTAAGAATTTTTTATCTC
Found at i:900856 original size:43 final size:43
Alignment explanation
Indices: 900803--900899 Score: 108
Period size: 43 Copynumber: 2.2 Consensus size: 43
900793 TTTAATCTCA
* *
900803 CTTTCTAATTGAGGCTCCTAAGAATTTTTT-ATCTC-AATTATAC
1 CTTTATAATTGAGGCCCCT-A-AATTTTTTAATCTCAAATTATAC
** *
900846 CTTTATAATTGAGGCCCCTATTTTTTTTCAATCTCAAATTCTAC
1 CTTTATAATTGAGGCCCCTAAATTTTTT-AATCTCAAATTATAC
900890 CTTTATAATT
1 CTTTATAATT
900900 AAAACCTCTA
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
41 6 0.13
42 1 0.02
43 22 0.48
44 17 0.37
ACGTcount: A:0.27, C:0.20, G:0.07, T:0.46
Consensus pattern (43 bp):
CTTTATAATTGAGGCCCCTAAATTTTTTAATCTCAAATTATAC
Found at i:900914 original size:43 final size:43
Alignment explanation
Indices: 900833--900916 Score: 114
Period size: 44 Copynumber: 1.9 Consensus size: 43
900823 AGAATTTTTT
* **
900833 ATCTCAATTATACCTTTATAATTGAGGCCCCTATTTTTTTTCA
1 ATCTCAATTATACCTTTATAATTAAAACCCCTATTTTTTTTCA
* *
900876 ATCTCAAATTCTACCTTTATAATTAAAACCTCTATTTTTTT
1 ATCTC-AATTATACCTTTATAATTAAAACCCCTATTTTTTT
900917 AAAATTTCAT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
43 5 0.14
44 30 0.86
ACGTcount: A:0.29, C:0.20, G:0.04, T:0.48
Consensus pattern (43 bp):
ATCTCAATTATACCTTTATAATTAAAACCCCTATTTTTTTTCA
Found at i:902208 original size:22 final size:20
Alignment explanation
Indices: 902182--902221 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
902172 AGACATAAAC
902182 TAATCAATAAATAATAAAAATA
1 TAATC-ATAAA-AATAAAAATA
*
902204 TAATCATAAAATTAAAAA
1 TAATCATAAAAATAAAAA
902222 AATTAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 5 0.29
22 5 0.29
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.28
Consensus pattern (20 bp):
TAATCATAAAAATAAAAATA
Found at i:907166 original size:22 final size:22
Alignment explanation
Indices: 907121--907186 Score: 66
Period size: 22 Copynumber: 3.1 Consensus size: 22
907111 AACCGAATTA
* *
907121 AAAAATAAACT-AACAAATAA-
1 AAAAATAAAATAAACATATAAT
*
907141 AAAAATAGTAA-AAACATATAAT
1 AAAAATA-AAATAAACATATAAT
*
907163 AAAAATAAAATAAACATAAAAT
1 AAAAATAAAATAAACATATAAT
907185 AA
1 AA
907187 GGACCTAATT
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
20 7 0.19
21 11 0.30
22 19 0.51
ACGTcount: A:0.74, C:0.06, G:0.02, T:0.18
Consensus pattern (22 bp):
AAAAATAAAATAAACATATAAT
Found at i:907183 original size:30 final size:30
Alignment explanation
Indices: 907119--907183 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 30
907109 TAAACCGAAT
*
907119 TAAAAAATAAACTAACAAATAAAAAAATAG
1 TAAAAAATAAACTAACAAATAAAAAAACAG
907149 TAAAAACATATAA-TAA-AAATAAAATAAACA-
1 TAAAAA-ATA-AACTAACAAATAAAA-AAACAG
907179 TAAAA
1 TAAAA
907184 TAAGGACCTA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
30 19 0.61
31 10 0.32
32 2 0.06
ACGTcount: A:0.74, C:0.06, G:0.02, T:0.18
Consensus pattern (30 bp):
TAAAAAATAAACTAACAAATAAAAAAACAG
Found at i:907184 original size:11 final size:11
Alignment explanation
Indices: 907152--907186 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
907142 AAAATAGTAA
*
907152 AAACATATAAT
1 AAACATAAAAT
*
907163 AAAAATAAAAT
1 AAACATAAAAT
907174 AAACATAAAAT
1 AAACATAAAAT
907185 AA
1 AA
907187 GGACCTAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.20
Consensus pattern (11 bp):
AAACATAAAAT
Found at i:909453 original size:45 final size:44
Alignment explanation
Indices: 909396--909513 Score: 155
Period size: 45 Copynumber: 2.6 Consensus size: 44
909386 TTTATTTAGG
* * *
909396 GCATCATTTCATGCTTTTAATGCACCATCATGCATTTCATTTAT
1 GCATCCTTTCATGCCTTTAATGCACCATCATGCATTTCATCTAT
** *
909440 AGCATCCTTTCATGCCTTTAATGCACTGTTATGCATTTCATCTAT
1 -GCATCCTTTCATGCCTTTAATGCACCATCATGCATTTCATCTAT
*
909485 GACATCCTTTCATGCCTTTAAAGCACCAT
1 G-CATCCTTTCATGCCTTTAATGCACCAT
909514 TAAGCAAATA
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 1 0.02
45 62 0.98
ACGTcount: A:0.25, C:0.25, G:0.10, T:0.40
Consensus pattern (44 bp):
GCATCCTTTCATGCCTTTAATGCACCATCATGCATTTCATCTAT
Found at i:909751 original size:54 final size:54
Alignment explanation
Indices: 909687--910192 Score: 694
Period size: 54 Copynumber: 9.4 Consensus size: 54
909677 TATCATATAA
* * * *
909687 TGGGTTGCACACA-AATAGCCGAAACGATTATTCATCAACATATGATGAATTTTG
1 TGGGTTGCACACATAGT-GCCGAAACGGTTGTTCATCAACATATGATGAATTCTG
**
909741 TGGGTTGCACACATAGTGTTGAAACGGTTGTTCATCAACATATGATGAATTCTG
1 TGGGTTGCACACATAGTGCCGAAACGGTTGTTCATCAACATATGATGAATTCTG
* *
909795 TGGGTTGCACACATAGTGCTGAAACGGTTGTTCATTAACATATGATGAATT-TCG
1 TGGGTTGCACACATAGTGCCGAAACGGTTGTTCATCAACATATGATGAATTCT-G
* * * * *
909849 TCGGTTACACACATAGTGCTGAAACGATTGTTCATTAACATATGATGAATT-TCG
1 TGGGTTGCACACATAGTGCCGAAACGGTTGTTCATCAACATATGATGAATTCT-G
* *
909903 TGGGTTGCACACATAGTGCTGAAATGGTTGTTCATCAACATATGATGAATTCTG
1 TGGGTTGCACACATAGTGCCGAAACGGTTGTTCATCAACATATGATGAATTCTG
* * *
909957 TGGGTTGCACACATAGTGTCGAAATGGTTGTTCATCAACATATGATGAATTCCG
1 TGGGTTGCACACATAGTGCCGAAACGGTTGTTCATCAACATATGATGAATTCTG
* * *
910011 TGGGTTGCACACATAGTGCCGAAATGGTTGTTCATCAACATATAATGAATTATG
1 TGGGTTGCACACATAGTGCCGAAACGGTTGTTCATCAACATATGATGAATTCTG
* * * * *
910065 TAGGTTACATACATAGTGTCGAAACGGTTGTCCATCAACATATGATGAATTCTG
1 TGGGTTGCACACATAGTGCCGAAACGGTTGTTCATCAACATATGATGAATTCTG
* *
910119 TGGGTTGCACACATAGTGTCGAAACAGTTGTTCATCAACATATGATGAATTCTG
1 TGGGTTGCACACATAGTGCCGAAACGGTTGTTCATCAACATATGATGAATTCTG
* *
910173 TAGGTCGCACACATAGTGCC
1 TGGGTTGCACACATAGTGCC
910193 AATAGTACAC
Statistics
Matches: 410, Mismatches: 39, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
53 1 0.00
54 406 0.99
55 3 0.01
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (54 bp):
TGGGTTGCACACATAGTGCCGAAACGGTTGTTCATCAACATATGATGAATTCTG
Found at i:909781 original size:27 final size:27
Alignment explanation
Indices: 909751--910167 Score: 98
Period size: 27 Copynumber: 15.5 Consensus size: 27
909741 TGGGTTGCAC
*
909751 ACATAGTGTTGAAACGGTTGTTCATCA
1 ACATAGTGATGAAACGGTTGTTCATCA
* * *
909778 ACATA-TGATGAATTCTGTGGGTTGCA-C-
1 ACATAGTGATGAA-ACGGT-TGTT-CATCA
* *
909805 ACATAGTGCTGAAACGGTTGTTCATTA
1 ACATAGTGATGAAACGGTTGTTCATCA
* *
909832 ACATA-TGATGAATTTC-GTCGGTT-A-CA
1 ACATAGTGATGAA--ACGGT-TGTTCATCA
* * *
909858 CACATAGTGCTGAAACGATTGTTCATTA
1 -ACATAGTGATGAAACGGTTGTTCATCA
* *
909886 ACATA-TGATGAATTTC-GTGGGTTGCA-C-
1 ACATAGTGATGAA--ACGGT-TGTT-CATCA
* *
909913 ACATAGTGCTGAAATGGTTGTTCATCA
1 ACATAGTGATGAAACGGTTGTTCATCA
* * *
909940 ACATA-TGATGAATTCTGTGGGTTGCA-C-
1 ACATAGTGATGAA-ACGGT-TGTT-CATCA
*
909967 ACATAGTG-TCGAAATGGTTGTTCATCA
1 ACATAGTGAT-GAAACGGTTGTTCATCA
* * *
909994 ACATA-TGATGAATTCCGTGGGTTGCA-C-
1 ACATAGTGATGAA-ACGGT-TGTT-CATCA
** *
910021 ACATAGTGCCGAAATGGTTGTTCATCA
1 ACATAGTGATGAAACGGTTGTTCATCA
* * *
910048 ACATA-TAATGAATTA-TGTAGGTT-A-CA
1 ACATAGTGATGAA--ACGGT-TGTTCATCA
*
910074 TACATAGTG-TCGAAACGGTTGTCCATCA
1 -ACATAGTGAT-GAAACGGTTGTTCATCA
* * *
910102 ACATA-TGATGAATTCTGTGGGTTGCA-C-
1 ACATAGTGATGAA-ACGGT-TGTT-CATCA
*
910129 ACATAGTG-TCGAAACAGTTGTTCATCA
1 ACATAGTGAT-GAAACGGTTGTTCATCA
910156 ACATA-TGATGAA
1 ACATAGTGATGAA
910168 TTCTGTAGGT
Statistics
Matches: 274, Mismatches: 62, Indels: 109
0.62 0.14 0.24
Matches are distributed among these distances:
25 10 0.04
26 72 0.26
27 115 0.42
28 67 0.24
29 10 0.04
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (27 bp):
ACATAGTGATGAAACGGTTGTTCATCA
Found at i:917611 original size:25 final size:27
Alignment explanation
Indices: 917576--917625 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
917566 AAAGATTAAA
**
917576 GAAAATGAGTTTTTAAG-TGAATTTTG
1 GAAAATGAGTTGATAAGTTGAATTTTG
917602 GAAAA-GAGTTGATAAGTTGAATTT
1 GAAAATGAGTTGATAAGTTGAATTT
917626 AAAACTAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 9 0.43
26 12 0.57
ACGTcount: A:0.38, C:0.00, G:0.24, T:0.38
Consensus pattern (27 bp):
GAAAATGAGTTGATAAGTTGAATTTTG
Found at i:918759 original size:31 final size:31
Alignment explanation
Indices: 918721--918845 Score: 180
Period size: 31 Copynumber: 4.0 Consensus size: 31
918711 AGGGTCAAGG
*
918721 GTTTACCTATGTTATTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
**
918752 GTTTACCTATGTTCTTTAGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
*
918783 GTTTACCTATGTTCTTTGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
* *
918814 GTTTACCTAGGTTCTTCGGAATC-TATGGACT
1 GTTTACCTATGTTCTTCGGGA-CATATGGACT
918845 G
1 G
918846 GTCCTTCGGG
Statistics
Matches: 86, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
31 85 0.99
32 1 0.01
ACGTcount: A:0.21, C:0.17, G:0.22, T:0.40
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:920352 original size:16 final size:17
Alignment explanation
Indices: 920331--920364 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
920321 ATAGTATCCG
*
920331 ATCCG-AATTTTTGGAT
1 ATCCGAAATTTTCGGAT
920347 ATCCGAAATTTTCGGAT
1 ATCCGAAATTTTCGGAT
920364 A
1 A
920365 CCTAAAGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (17 bp):
ATCCGAAATTTTCGGAT
Found at i:925152 original size:26 final size:27
Alignment explanation
Indices: 925102--925152 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
925092 AAAAAAAAAT
* *
925102 AAGTAAAAACAAAAATACGAGATAAGA
1 AAGTAAAAACAAAAATAAGAAATAAGA
*
925129 AAGT-AAAAGAAAAATAAGAAATAA
1 AAGTAAAAACAAAAATAAGAAATAA
925153 TAATAGTTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 17 0.81
27 4 0.19
ACGTcount: A:0.71, C:0.04, G:0.14, T:0.12
Consensus pattern (27 bp):
AAGTAAAAACAAAAATAAGAAATAAGA
Found at i:926261 original size:14 final size:14
Alignment explanation
Indices: 926236--926263 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
926226 ATCATAACAA
926236 AATTATATAACTAT
1 AATTATATAACTAT
926250 AATTATATAACTAT
1 AATTATATAACTAT
926264 TCTTTCACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (14 bp):
AATTATATAACTAT
Found at i:926534 original size:9 final size:9
Alignment explanation
Indices: 926522--926560 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
926512 AAAAAAAAAA
926522 TCCCGGTTT
1 TCCCGGTTT
*
926531 TCCCAGTTT
1 TCCCGGTTT
926540 TCCCGGTTTT
1 TCCCGG-TTT
*
926550 TTCCGGTTT
1 TCCCGGTTT
926559 TC
1 TC
926561 AGCCGGTCCG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
9 17 0.68
10 8 0.32
ACGTcount: A:0.03, C:0.31, G:0.18, T:0.49
Consensus pattern (9 bp):
TCCCGGTTT
Found at i:927865 original size:4 final size:4
Alignment explanation
Indices: 927856--927889 Score: 52
Period size: 4 Copynumber: 8.5 Consensus size: 4
927846 GAAGCTGTGC
927856 ATTT ATTT ATTT ATTT ATTT ATTT -TTT CATTT AT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT -ATTT AT
927890 AACTTTTAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 3 0.11
4 22 0.79
5 3 0.11
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (4 bp):
ATTT
Found at i:931360 original size:29 final size:29
Alignment explanation
Indices: 931305--931360 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
931295 TTAAATTAAA
* * *
931305 TTAAAATTTAATAATTAAATTATAAAATT
1 TTAAAATATAATAATTAAAATAAAAAATT
*
931334 TTAAAATATAATGATTAAAATAAAAAA
1 TTAAAATATAATAATTAAAATAAAAAA
931361 ACTAAAAGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (29 bp):
TTAAAATATAATAATTAAAATAAAAAATT
Found at i:937758 original size:16 final size:17
Alignment explanation
Indices: 937734--937766 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
937724 CTATGTCATC
937734 CTAACTGTTAT-AGTTT
1 CTAACTGTTATGAGTTT
*
937750 CTAATTGTTATGAGTTT
1 CTAACTGTTATGAGTTT
937767 ATTATTAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.24, C:0.09, G:0.15, T:0.52
Consensus pattern (17 bp):
CTAACTGTTATGAGTTT
Found at i:941681 original size:20 final size:20
Alignment explanation
Indices: 941658--941696 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
941648 AGATTGAGTG
* *
941658 GATTTTGATGTTGTTTGCAT
1 GATTTTAATGATGTTTGCAT
941678 GATTTTAATGATGTTTGCA
1 GATTTTAATGATGTTTGCA
941697 AGTTTAGGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.05, G:0.23, T:0.51
Consensus pattern (20 bp):
GATTTTAATGATGTTTGCAT
Found at i:941875 original size:21 final size:21
Alignment explanation
Indices: 941849--941888 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
941839 CAGAACCCCA
*
941849 GGGGGGTATCGATTCCCCTGT
1 GGGGGGAATCGATTCCCCTGT
*
941870 GGGGGGAATCGGTTCCCCT
1 GGGGGGAATCGATTCCCCT
941889 TCAAAGGGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.25, G:0.40, T:0.25
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCCTGT
Found at i:941917 original size:20 final size:21
Alignment explanation
Indices: 941871--941931 Score: 79
Period size: 20 Copynumber: 2.9 Consensus size: 21
941861 TTCCCCTGTG
941871 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGGTT-CCC-TCAAA
941894 GGGGGAATCGGTTCCCTC-AA
1 GGGGGAATCGGTTCCCTCAAA
* *
941914 GGGGGGATCGATTCCCTC
1 GGGGGAATCGGTTCCCTC
941932 TACACCAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
20 18 0.50
21 2 0.06
22 3 0.08
23 13 0.36
ACGTcount: A:0.18, C:0.26, G:0.34, T:0.21
Consensus pattern (21 bp):
GGGGGAATCGGTTCCCTCAAA
Found at i:955744 original size:26 final size:26
Alignment explanation
Indices: 955693--955744 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
955683 GAACTAAACT
* *
955693 AAATAAAAACTAAATGCCACATAATG
1 AAATAAAAACTAAATGCAAAATAATG
*
955719 AAATACAAACTAAATG-AAAATGAATG
1 AAATAAAAACTAAATGCAAAAT-AATG
955745 CAAGTGAGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 3 0.14
26 19 0.86
ACGTcount: A:0.60, C:0.12, G:0.10, T:0.19
Consensus pattern (26 bp):
AAATAAAAACTAAATGCAAAATAATG
Found at i:956815 original size:20 final size:20
Alignment explanation
Indices: 956779--956836 Score: 55
Period size: 21 Copynumber: 2.9 Consensus size: 20
956769 GATGAGGAAA
*
956779 TAAAA-GAAAAAGTAAAAGT
1 TAAAATGAAAAAGAAAAAGT
*
956798 TAAAATGAAATAGAAAAAAGT
1 TAAAATGAAAAAG-AAAAAGT
* *
956819 TAAGGATGAAAGAGAAAA
1 TAA-AATGAAAAAGAAAA
956837 TAAAAAGTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 5 0.16
20 6 0.19
21 13 0.41
22 8 0.25
ACGTcount: A:0.66, C:0.00, G:0.19, T:0.16
Consensus pattern (20 bp):
TAAAATGAAAAAGAAAAAGT
Found at i:956818 original size:21 final size:22
Alignment explanation
Indices: 956792--956836 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
956782 AAGAAAAAGT
*
956792 AAAAGTTAA-AATGAAATAGAA
1 AAAAGTTAAGAATGAAAGAGAA
*
956813 AAAAGTTAAGGATGAAAGAGAA
1 AAAAGTTAAGAATGAAAGAGAA
956835 AA
1 AA
956837 TAAAAAGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.64, C:0.00, G:0.20, T:0.16
Consensus pattern (22 bp):
AAAAGTTAAGAATGAAAGAGAA
Found at i:968149 original size:111 final size:111
Alignment explanation
Indices: 967928--968159 Score: 281
Period size: 111 Copynumber: 2.1 Consensus size: 111
967918 TGCACCGAAG
* * ** *
967928 TGTCGAAATTGTAGTTCACCTCATTATGAATACCATGGGTGGCACCTTTATGTCGAAAATGCACC
1 TGTCGAAATGGTAATTCACCTCATTATGAATACCATGAATGGCACCTTTATGCCGAAAATGCACC
* * **
967993 ATTATGGCTTAAGCAAAATCGATCGATAACTTTCATACATGAAGTA
66 ATTATGGCTTAAGCAAAATAGATCGATAACTATCATACACAAAGTA
* *
968039 TGTCGAAATGGTAATTCACCTCATTATGAATACCATGAATGGCACTTTTTATGCCGAAAATGCAT
1 TGTCGAAATGGTAATTCACCTCATTATGAATACCATGAATGGCAC-CTTTATGCCGAAAATGCAC
* * *
968104 CGTTAT-GCATTAAG-ATAAATAGATTGAT-ACTATCGTACACAAAGTA
65 CATTATGGC-TTAAGCA-AAATAGATCGATAACTATCATACACAAAGTA
*
968150 TGTTGAAATG
1 TGTCGAAATG
968160 AATATATGAC
Statistics
Matches: 103, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
111 67 0.65
112 36 0.35
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (111 bp):
TGTCGAAATGGTAATTCACCTCATTATGAATACCATGAATGGCACCTTTATGCCGAAAATGCACC
ATTATGGCTTAAGCAAAATAGATCGATAACTATCATACACAAAGTA
Found at i:971322 original size:29 final size:30
Alignment explanation
Indices: 971288--971374 Score: 115
Period size: 31 Copynumber: 2.9 Consensus size: 30
971278 CATAGTTTTG
* *
971288 AAAAAAAATGAA-AGTTTAGGTACTAAAA-
1 AAAAAAAATTAATAGTTTAGATACTAAAAT
* *
971316 AATAAAAATTAATAGCTTAGATACTAAAAT
1 AAAAAAAATTAATAGTTTAGATACTAAAAT
971346 AAATAAAAATTAATAGTTTAGATACTAAA
1 AAA-AAAAATTAATAGTTTAGATACTAAA
971375 CACGTAATTT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
28 10 0.20
29 14 0.28
30 2 0.04
31 24 0.48
ACGTcount: A:0.59, C:0.05, G:0.09, T:0.28
Consensus pattern (30 bp):
AAAAAAAATTAATAGTTTAGATACTAAAAT
Found at i:972604 original size:18 final size:20
Alignment explanation
Indices: 972576--972628 Score: 56
Period size: 20 Copynumber: 2.5 Consensus size: 20
972566 AACACGTAAA
972576 ATCATAAAATAATTTAT-AAT
1 ATCA-AAAATAATTTATCAAT
972596 A-CAAAAATAAAATTTATCAAT
1 ATCAAAAAT--AATTTATCAAT
972617 ATTCAAAAATAA
1 A-TCAAAAATAA
972629 AACAAATTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
18 5 0.18
19 2 0.07
20 8 0.29
21 6 0.21
23 7 0.25
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (20 bp):
ATCAAAAATAATTTATCAAT
Found at i:972623 original size:23 final size:20
Alignment explanation
Indices: 972586--972630 Score: 63
Period size: 23 Copynumber: 2.1 Consensus size: 20
972576 ATCATAAAAT
972586 AATTTATAATACAAAAATAA
1 AATTTATAATACAAAAATAA
972606 AATTTATCAATATTCAAAAATAA
1 AATTTAT-AATA--CAAAAATAA
972629 AA
1 AA
972631 CAAATTCATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.32
21 4 0.18
23 11 0.50
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (20 bp):
AATTTATAATACAAAAATAA
Found at i:973265 original size:31 final size:31
Alignment explanation
Indices: 973191--973297 Score: 108
Period size: 31 Copynumber: 3.4 Consensus size: 31
973181 TTAGGGCCTG
* * *
973191 AGAGCCTACCCAAGAAAGTTAACT-GAGGCCAC
1 AGAGCCTACCCAAG-AAG-GATCTCGGGGCCAC
* *
973223 AGAACCTACCCAAGAAGGATCTCGGGGCCGC
1 AGAGCCTACCCAAGAAGGATCTCGGGGCCAC
* * * *
973254 AGAGCCTACCCAAGAAAGTTATCGGGGCCTC
1 AGAGCCTACCCAAGAAGGATCTCGGGGCCAC
973285 AGAGCCTACCCAA
1 AGAGCCTACCCAA
973298 TGGTCACCTT
Statistics
Matches: 64, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
30 3 0.05
31 48 0.75
32 13 0.20
ACGTcount: A:0.33, C:0.31, G:0.24, T:0.12
Consensus pattern (31 bp):
AGAGCCTACCCAAGAAGGATCTCGGGGCCAC
Found at i:974607 original size:23 final size:23
Alignment explanation
Indices: 974580--974629 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
974570 CGGTAATTTC
*
974580 TTTCAATCCAATCCTATGTATCT
1 TTTCAAACCAATCCTATGTATCT
974603 TTTCAAACCAATCCTATGTATCT
1 TTTCAAACCAATCCTATGTATCT
974626 TTTC
1 TTTC
974630 TTGTAATTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.04, T:0.44
Consensus pattern (23 bp):
TTTCAAACCAATCCTATGTATCT
Found at i:976951 original size:20 final size:20
Alignment explanation
Indices: 976926--976963 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
976916 TTGGGCAAGA
976926 AGTATCGATATTGTTCTTAC
1 AGTATCGATATTGTTCTTAC
976946 AGTATCGATATTGTTCTT
1 AGTATCGATATTGTTCTT
976964 GTAATATCGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.24, C:0.13, G:0.16, T:0.47
Consensus pattern (20 bp):
AGTATCGATATTGTTCTTAC
Found at i:976971 original size:20 final size:20
Alignment explanation
Indices: 976928--976973 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
976918 GGGCAAGAAG
*
976928 TATCGATATTGTTCTTACAG
1 TATCGATATTGTTCTTACAA
**
976948 TATCGATATTGTTCTTGTAA
1 TATCGATATTGTTCTTACAA
976968 TATCGA
1 TATCGA
976974 CACTCTCATG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.26, C:0.13, G:0.15, T:0.46
Consensus pattern (20 bp):
TATCGATATTGTTCTTACAA
Found at i:977065 original size:18 final size:18
Alignment explanation
Indices: 977042--977089 Score: 96
Period size: 18 Copynumber: 2.7 Consensus size: 18
977032 GACAAAACTG
977042 GTATCGATACTATAAGGA
1 GTATCGATACTATAAGGA
977060 GTATCGATACTATAAGGA
1 GTATCGATACTATAAGGA
977078 GTATCGATACTA
1 GTATCGATACTA
977090 CTTTATATAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.29
Consensus pattern (18 bp):
GTATCGATACTATAAGGA
Found at i:977108 original size:24 final size:24
Alignment explanation
Indices: 977077--977137 Score: 122
Period size: 24 Copynumber: 2.5 Consensus size: 24
977067 TACTATAAGG
977077 AGTATCGATACTACTTTATATAGT
1 AGTATCGATACTACTTTATATAGT
977101 AGTATCGATACTACTTTATATAGT
1 AGTATCGATACTACTTTATATAGT
977125 AGTATCGATACTA
1 AGTATCGATACTA
977138 TGATCTCAGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.39
Consensus pattern (24 bp):
AGTATCGATACTACTTTATATAGT
Found at i:978505 original size:3 final size:3
Alignment explanation
Indices: 978497--978578 Score: 139
Period size: 3 Copynumber: 27.7 Consensus size: 3
978487 CAAAGGAAAA
978497 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
* *
978545 AAG AAG AAG AAG AAG AA- AAT AAG AAG AAC AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
978579 AAATAATGAG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
2 2 0.03
3 73 0.97
ACGTcount: A:0.68, C:0.01, G:0.29, T:0.01
Consensus pattern (3 bp):
AAG
Found at i:984979 original size:17 final size:18
Alignment explanation
Indices: 984943--984982 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
984933 CAAAAGAGAC
984943 CAAGTCATTATCATTGAT
1 CAAGTCATTATCATTGAT
984961 CAAGTCACTT-TCA-TGAT
1 CAAGTCA-TTATCATTGAT
984978 CAAGT
1 CAAGT
984983 GCATAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.43
18 10 0.48
19 2 0.10
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (18 bp):
CAAGTCATTATCATTGAT
Found at i:991792 original size:20 final size:22
Alignment explanation
Indices: 991767--991806 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
991757 CCTAACCTAA
991767 AATTTT-T-GTATCAAAAAAAT
1 AATTTTATCGTATCAAAAAAAT
*
991787 AATTTTATCTTATCAAAAAA
1 AATTTTATCGTATCAAAAAA
991807 TCATTTTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 1 0.06
22 10 0.59
ACGTcount: A:0.50, C:0.07, G:0.03, T:0.40
Consensus pattern (22 bp):
AATTTTATCGTATCAAAAAAAT
Found at i:1011888 original size:16 final size:18
Alignment explanation
Indices: 1011867--1011901 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
1011857 TAAGTGGTTT
1011867 AATTGAT-A-AAATTAAA
1 AATTGATGATAAATTAAA
1011883 AATTGATGATAAATTAAA
1 AATTGATGATAAATTAAA
1011901 A
1 A
1011902 TTCGCTTGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 1 0.06
18 9 0.53
ACGTcount: A:0.60, C:0.00, G:0.09, T:0.31
Consensus pattern (18 bp):
AATTGATGATAAATTAAA
Found at i:1013710 original size:24 final size:24
Alignment explanation
Indices: 1013683--1013730 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
1013673 GGCTCGATTT
1013683 TCTTCCAACAGCCAGACCTTTTAA
1 TCTTCCAACAGCCAGACCTTTTAA
* *
1013707 TCTTCCAACGGTCAGACCTTTTAA
1 TCTTCCAACAGCCAGACCTTTTAA
1013731 ATTCCAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.31
Consensus pattern (24 bp):
TCTTCCAACAGCCAGACCTTTTAA
Found at i:1014102 original size:24 final size:26
Alignment explanation
Indices: 1014075--1014133 Score: 68
Period size: 29 Copynumber: 2.2 Consensus size: 26
1014065 TCCTACATGG
*
1014075 TTAATTT-A-CTTCACTGTAATTTGT
1 TTAATTTCATCTTCAATGTAATTTGT
1014099 TTAATTGCTTCATCTTCAATGTAATTTGT
1 TTAA-T--TTCATCTTCAATGTAATTTGT
1014128 TTAATT
1 TTAATT
1014134 GTTTATATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
24 4 0.14
25 1 0.03
26 1 0.03
27 2 0.07
28 2 0.07
29 19 0.66
ACGTcount: A:0.25, C:0.12, G:0.08, T:0.54
Consensus pattern (26 bp):
TTAATTTCATCTTCAATGTAATTTGT
Found at i:1014291 original size:20 final size:20
Alignment explanation
Indices: 1014231--1014293 Score: 63
Period size: 23 Copynumber: 3.0 Consensus size: 20
1014221 ACTTGTTATT
1014231 TTGTTAAGGTAATCTGTTTAA
1 TTGTT-AGGTAATCTGTTTAA
** *
1014252 TTGTTTATCTATAATATGTTTAA
1 TTG-TTA--GGTAATCTGTTTAA
1014275 TTGTTAGGTAATCTGTTTA
1 TTGTTAGGTAATCTGTTTA
1014294 GAATTTAGAT
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
20 10 0.30
21 4 0.12
22 5 0.15
23 14 0.42
ACGTcount: A:0.27, C:0.05, G:0.16, T:0.52
Consensus pattern (20 bp):
TTGTTAGGTAATCTGTTTAA
Found at i:1018143 original size:88 final size:89
Alignment explanation
Indices: 1017989--1018168 Score: 326
Period size: 88 Copynumber: 2.0 Consensus size: 89
1017979 TATATCGATC
1017989 TAGTTTCGAGCAATGATGTAACCATTTCTACAAGTAGATGATTTCTCTAAACTGATTATG-ATTT
1 TAGTTTCGAGCAATGATGTAACCATTTCTACAAGTAGATGATTTCTCTAAACTGATTATGAATTT
1018053 TTTTTTTTATACAGGAGAACCATT
66 TTTTTTTTATACAGGAGAACCATT
1018077 TAGTTTCGAGCAATGATGTAACCATTTCTACAAGTAGATGATTTCTCTAAACTGATTATGAATTT
1 TAGTTTCGAGCAATGATGTAACCATTTCTACAAGTAGATGATTTCTCTAAACTGATTATGAA---
1018142 TTTTTTTTTTTATACAGGAGAACCATT
63 TTTTTTTTTTTATACAGGAGAACCATT
1018169 CATTGATGGG
Statistics
Matches: 88, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
88 60 0.68
89 1 0.01
92 27 0.31
ACGTcount: A:0.31, C:0.13, G:0.14, T:0.42
Consensus pattern (89 bp):
TAGTTTCGAGCAATGATGTAACCATTTCTACAAGTAGATGATTTCTCTAAACTGATTATGAATTT
TTTTTTTTATACAGGAGAACCATT
Found at i:1020055 original size:104 final size:102
Alignment explanation
Indices: 1019871--1020062 Score: 217
Period size: 104 Copynumber: 1.9 Consensus size: 102
1019861 TGCTTTTTAT
* *
1019871 ACACTAAAAATATATTTTGTGACCATCAATACTGTCACACTAAGTATTTTTAATGACCAAATGTT
1 ACACTAAAAATATATTTTGTGACCATCAATACTGTCACACTAAGTATTTTTAATAACCAAACGTT
* * *
1019936 CGATACTATTATTAATTGAAATTGTGATAAATTTATTTG
66 AGATACGACTATTAA-TG-AATTGTGATAAATTTATTTG
* * ** * * * *
1019975 ACACTGAAAGTATATTTTGTGACCATCAATGTTGTCACAGTAATTGTTTGTTAGTAACCAAACGT
1 ACACTAAAAATATATTTTGTGACCATCAATACTGTCACACTAAGTATTT-TTAATAACCAAACGT
1020040 TAG-TGACGACT-TTAATGAATTGT
65 TAGAT-ACGACTATTAATGAATTGT
1020063 CACAAGTATT
Statistics
Matches: 73, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
102 6 0.08
103 2 0.03
104 47 0.64
105 18 0.25
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.38
Consensus pattern (102 bp):
ACACTAAAAATATATTTTGTGACCATCAATACTGTCACACTAAGTATTTTTAATAACCAAACGTT
AGATACGACTATTAATGAATTGTGATAAATTTATTTG
Found at i:1022601 original size:14 final size:14
Alignment explanation
Indices: 1022582--1022615 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
1022572 CTAAACCTAA
* *
1022582 CCTAAATTTTAAAC
1 CCTAAATCTAAAAC
1022596 CCTAAATCTAAAAC
1 CCTAAATCTAAAAC
1022610 CCTAAA
1 CCTAAA
1022616 CACGACCCAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.47, C:0.26, G:0.00, T:0.26
Consensus pattern (14 bp):
CCTAAATCTAAAAC
Found at i:1023308 original size:37 final size:37
Alignment explanation
Indices: 1023238--1023309 Score: 92
Period size: 38 Copynumber: 1.9 Consensus size: 37
1023228 GAAAAATATT
* *
1023238 TATATATTTTCTTTAAAAAATTTAAATTCATAAAATG
1 TATATATTTTCTTTAAAAAATTGAAAATCATAAAATG
* *
1023275 TATATAATTTTTTTTACAAAATTGAAAAT-ATAAAA
1 TATAT-ATTTTCTTTAAAAAATTGAAAATCATAAAA
1023310 AGGTTTAATG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
37 11 0.37
38 19 0.63
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (37 bp):
TATATATTTTCTTTAAAAAATTGAAAATCATAAAATG
Found at i:1023705 original size:18 final size:19
Alignment explanation
Indices: 1023670--1023705 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
1023660 CACGGAATGT
1023670 AAGATTACCAGTGGAATAA
1 AAGATTACCAGTGGAATAA
1023689 AAGATTACCAG-GGAATA
1 AAGATTACCAGTGGAATA
1023706 GGATTACTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.47, C:0.11, G:0.22, T:0.19
Consensus pattern (19 bp):
AAGATTACCAGTGGAATAA
Found at i:1030610 original size:20 final size:20
Alignment explanation
Indices: 1030585--1030629 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
1030575 ACTTGTGTCA
*
1030585 AGACTGGACACATTTTCCCC
1 AGACTGCACACATTTTCCCC
1030605 AGACTGCACACATTTTCCCC
1 AGACTGCACACATTTTCCCC
1030625 AGACT
1 AGACT
1030630 CACCATCTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.27, C:0.36, G:0.13, T:0.24
Consensus pattern (20 bp):
AGACTGCACACATTTTCCCC
Found at i:1032366 original size:20 final size:20
Alignment explanation
Indices: 1032341--1032420 Score: 99
Period size: 20 Copynumber: 3.9 Consensus size: 20
1032331 TAATTGAAAA
*
1032341 TCGCGTTGCGATTTTCCATT
1 TCGCGTTGCGATTTTCCAGT
1032361 TCGCGTTGCGATTTTCCAGT
1 TCGCGTTGCGATTTTCCAGT
* *
1032381 TCGCGTTGCGATAGTCTACAGT
1 TCGCGTTGCGAT--TTTCCAGT
1032403 T-GTCGTTGCGATTTTCCA
1 TCG-CGTTGCGATTTTCCA
1032421 AATTCGTTGC
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
20 35 0.67
21 1 0.02
22 16 0.31
ACGTcount: A:0.12, C:0.24, G:0.24, T:0.40
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCCAGT
Found at i:1032409 original size:22 final size:22
Alignment explanation
Indices: 1032384--1032455 Score: 87
Period size: 22 Copynumber: 3.4 Consensus size: 22
1032374 TTCCAGTTCG
1032384 CGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATAGTCTACAGTTGT
* * **
1032406 CGTTGCGAT--TTTCCAAAT-T
1 CGTTGCGATAGTCTACAGTTGT
1032425 CGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATAGTCTACAGTTGT
1032447 CGTTGCGAT
1 CGTTGCGAT
1032456 TTTTCAAATT
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
19 10 0.26
20 5 0.13
21 5 0.13
22 19 0.49
ACGTcount: A:0.18, C:0.19, G:0.25, T:0.38
Consensus pattern (22 bp):
CGTTGCGATAGTCTACAGTTGT
Found at i:1032429 original size:19 final size:19
Alignment explanation
Indices: 1032405--1032473 Score: 66
Period size: 19 Copynumber: 3.5 Consensus size: 19
1032395 TCTACAGTTG
*
1032405 TCGTTGCGATTTTCCAAAT
1 TCGTTGCGATTTTACAAAT
* **
1032424 TCGTTGCGATAGTCTACAGTT
1 TCGTTGCGAT--TTTACAAAT
*
1032445 GTCGTTGCGATTTTTCAAAT
1 -TCGTTGCGATTTTACAAAT
1032465 TCGTTGCGA
1 TCGTTGCGA
1032474 AAATTCGTTG
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
19 19 0.49
20 5 0.13
21 5 0.13
22 10 0.26
ACGTcount: A:0.19, C:0.19, G:0.22, T:0.41
Consensus pattern (19 bp):
TCGTTGCGATTTTACAAAT
Found at i:1032439 original size:41 final size:41
Alignment explanation
Indices: 1032364--1032473 Score: 177
Period size: 41 Copynumber: 2.7 Consensus size: 41
1032354 TTCCATTTCG
*
1032364 CGTTGCGATTTTCC-AGTTCGCGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATTTTCCAAATT--CGTTGCGATAGTCTACAGTTGT
1032406 CGTTGCGATTTTCCAAATTCGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATTTTCCAAATTCGTTGCGATAGTCTACAGTTGT
*
1032447 CGTTGCGATTTTTCAAATTCGTTGCGA
1 CGTTGCGATTTTCCAAATTCGTTGCGA
1032474 AAATTCGTTG
Statistics
Matches: 65, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
41 48 0.74
42 14 0.22
43 3 0.05
ACGTcount: A:0.17, C:0.20, G:0.24, T:0.39
Consensus pattern (41 bp):
CGTTGCGATTTTCCAAATTCGTTGCGATAGTCTACAGTTGT
Found at i:1033110 original size:12 final size:11
Alignment explanation
Indices: 1033080--1033113 Score: 52
Period size: 12 Copynumber: 3.1 Consensus size: 11
1033070 GCCCTCCATC
1033080 TCGGGTCG-GG
1 TCGGGTCGTGG
1033090 TCGGGTCGTGG
1 TCGGGTCGTGG
1033101 TCGTGGTCGTGG
1 TCG-GGTCGTGG
1033113 T
1 T
1033114 AATACGTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 8 0.36
11 5 0.23
12 9 0.41
ACGTcount: A:0.00, C:0.18, G:0.53, T:0.29
Consensus pattern (11 bp):
TCGGGTCGTGG
Found at i:1033217 original size:19 final size:19
Alignment explanation
Indices: 1033193--1033260 Score: 91
Period size: 19 Copynumber: 3.5 Consensus size: 19
1033183 TTTTTTAACT
1033193 ATCGCAACGAATTTGGAAA
1 ATCGCAACGAATTTGGAAA
* * **
1033212 ATCGCAACGAACTGTAGACT
1 ATCGCAACGAA-TTTGGAAA
1033232 ATCGCAACGAATTTGGAAA
1 ATCGCAACGAATTTGGAAA
1033251 ATCGCAACGA
1 ATCGCAACGA
1033261 CATTGTAGAC
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
19 25 0.62
20 15 0.38
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.19
Consensus pattern (19 bp):
ATCGCAACGAATTTGGAAA
Found at i:1033234 original size:39 final size:40
Alignment explanation
Indices: 1033190--1033280 Score: 157
Period size: 39 Copynumber: 2.3 Consensus size: 40
1033180 TTTTTTTTTA
1033190 ACTATCGCAACGAATTTGGAAAATCGCAACGA-ACTGTAG
1 ACTATCGCAACGAATTTGGAAAATCGCAACGACACTGTAG
*
1033229 ACTATCGCAACGAATTTGGAAAATCGCAACGACATTGTAG
1 ACTATCGCAACGAATTTGGAAAATCGCAACGACACTGTAG
*
1033269 ACTATCACAACG
1 ACTATCGCAACG
1033281 CGAAATGGAA
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
39 32 0.65
40 17 0.35
ACGTcount: A:0.38, C:0.22, G:0.19, T:0.21
Consensus pattern (40 bp):
ACTATCGCAACGAATTTGGAAAATCGCAACGACACTGTAG
Found at i:1033300 original size:17 final size:17
Alignment explanation
Indices: 1033278--1033311 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
1033268 GACTATCACA
1033278 ACGCGAAATGGAAAATC
1 ACGCGAAATGGAAAATC
1033295 ACGCGAAATGGAAAATC
1 ACGCGAAATGGAAAATC
1033312 GCAACGCGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.18, G:0.24, T:0.12
Consensus pattern (17 bp):
ACGCGAAATGGAAAATC
Found at i:1033343 original size:41 final size:41
Alignment explanation
Indices: 1033295--1033423 Score: 249
Period size: 41 Copynumber: 3.1 Consensus size: 41
1033285 ATGGAAAATC
1033295 ACGCGAAATGGAAAATCGCAACGCGATTTTCAACTATCGCA
1 ACGCGAAATGGAAAATCGCAACGCGATTTTCAACTATCGCA
1033336 ACGCGAAATGGAAAATCGCAACGCGATTTTCAACTATCGCA
1 ACGCGAAATGGAAAATCGCAACGCGATTTTCAACTATCGCA
*
1033377 ACGCGAACTGGAAAATCGCAACGCGATTTTCAACTATCGCA
1 ACGCGAAATGGAAAATCGCAACGCGATTTTCAACTATCGCA
1033418 ACGCGA
1 ACGCGA
1033424 TTTTCAACTA
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
41 87 1.00
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.19
Consensus pattern (41 bp):
ACGCGAAATGGAAAATCGCAACGCGATTTTCAACTATCGCA
Found at i:1033417 original size:62 final size:62
Alignment explanation
Indices: 1033350--1033485 Score: 254
Period size: 62 Copynumber: 2.2 Consensus size: 62
1033340 GAAATGGAAA
*
1033350 ATCGCAACGCGATTTTCAACTATCGCAACGCGAACTGGAAAATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGATTTTCAACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCAACT
*
1033412 ATCGCAACGCGATTTTCAACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCGACT
1 ATCGCAACGCGATTTTCAACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCAACT
1033474 ATCGCAACGCGA
1 ATCGCAACGCGA
1033486 AATGCAACGC
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 72 1.00
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.21
Consensus pattern (62 bp):
ATCGCAACGCGATTTTCAACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCAACT
Found at i:1033457 original size:82 final size:82
Alignment explanation
Indices: 1033269--1033464 Score: 247
Period size: 82 Copynumber: 2.4 Consensus size: 82
1033259 GACATTGTAG
*
1033269 ACTATCACAACGCGAAATGGAAAAT--C-ACGCGAAATGGAAAATCGCAACGCGATTTTCAACTA
1 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCAACTA
*
1033331 TCGCAACGCGAAATGGA
66 TCGCAACGCGAAATGCA
* ** ** * *
1033348 A-AATCGCAACGCGATTTTCAACTATCGCAACGCGAACTGGAAAATCGCAACGCGATTTTCAACT
1 ACTATCGCAACGCGAAATGGAA-AATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCAACT
** *
1033412 ATCGCAACGCGATTTTCA
65 ATCGCAACGCGAAATGCA
1033430 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGA
1 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGA
1033465 TTTTCGACTA
Statistics
Matches: 94, Mismatches: 18, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
78 14 0.15
79 3 0.03
81 1 0.01
82 61 0.65
83 15 0.16
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.18
Consensus pattern (82 bp):
ACTATCGCAACGCGAAATGGAAAATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCAACTA
TCGCAACGCGAAATGCA
Found at i:1033506 original size:41 final size:41
Alignment explanation
Indices: 1033412--1033489 Score: 147
Period size: 41 Copynumber: 1.9 Consensus size: 41
1033402 ATTTTCAACT
1033412 ATCGCAACGCGATTTTCAACTATCGCAACGCGAAATGGAAA
1 ATCGCAACGCGATTTTCAACTATCGCAACGCGAAATGGAAA
*
1033453 ATCGCAACGCGATTTTCGACTATCGCAACGCGAAATG
1 ATCGCAACGCGATTTTCAACTATCGCAACGCGAAATG
1033490 CAACGCGAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.33, C:0.26, G:0.21, T:0.21
Consensus pattern (41 bp):
ATCGCAACGCGATTTTCAACTATCGCAACGCGAAATGGAAA
Found at i:1033506 original size:103 final size:103
Alignment explanation
Indices: 1033229--1033489 Score: 349
Period size: 103 Copynumber: 2.6 Consensus size: 103
1033219 CGAACTGTAG
* * *
1033229 ACTATCGCAA--CGAATTTGGAAAATCGCAACGAC-ATTGT-AGACTATCACAACGCGAAATGGA
1 ACTATCGCAACGCGAA-ATGGAAAATCGCAACG-CGATTTTCA-ACTATCGCAACGCGAAATGGA
** ** *
1033290 AAAT--C-ACGCGAAATGGAA-AATCGCAACGCGATTTTCA
63 AAATCGCAACGCGATTTTCAACTATCGCAACGCGATTTTCA
*
1033327 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCAACTATCGCAACGCGAACTGGAAAA
1 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCAACTATCGCAACGCGAAATGGAAAA
1033392 TCGCAACGCGATTTTCAACTATCGCAACGCGATTTTCA
66 TCGCAACGCGATTTTCAACTATCGCAACGCGATTTTCA
*
1033430 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCGACTATCGCAACGCGAAATG
1 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCAACTATCGCAACGCGAAATG
1033490 CAACGCGAAT
Statistics
Matches: 144, Mismatches: 11, Indels: 11
0.87 0.07 0.07
Matches are distributed among these distances:
98 11 0.08
99 42 0.29
100 5 0.03
101 1 0.01
102 9 0.06
103 76 0.53
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.20
Consensus pattern (103 bp):
ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCAACTATCGCAACGCGAAATGGAAAA
TCGCAACGCGATTTTCAACTATCGCAACGCGATTTTCA
Found at i:1036398 original size:37 final size:37
Alignment explanation
Indices: 1036336--1036509 Score: 174
Period size: 37 Copynumber: 4.4 Consensus size: 37
1036326 CTTATTTAGT
1036336 ATATATATTAATATAATATAGTTTTTGAAAACATTTTGAAA
1 ATATATA-TAATAT-ATA-A-TTTTTGAAAACATTTTGAAA
* *
1036377 ACATATATAATATATAATTTTTGAAATCATTTTGAAA
1 ATATATATAATATATAATTTTTGAAAACATTTTGAAA
1036414 ATATATAT-ATA-ATAAATAGTTTTGAAAACATTTTCGAATA
1 ATATATATAATATAT-AAT--TTTTGAAAACATTTT-GAA-A
* *
1036454 TATATATATAATATAT-AGTTTTGAAAACATTTTTTGAAT
1 -ATATATATAATATATAATTTTTGAAAACA--TTTTGAAA
1036493 ATATATATATATATATA
1 ATATATATA-ATATATA
1036510 TATAATGTAT
Statistics
Matches: 115, Mismatches: 6, Indels: 25
0.79 0.04 0.17
Matches are distributed among these distances:
35 2 0.02
36 6 0.05
37 26 0.23
38 24 0.21
39 23 0.20
40 10 0.09
41 19 0.17
42 3 0.03
43 2 0.02
ACGTcount: A:0.46, C:0.03, G:0.06, T:0.44
Consensus pattern (37 bp):
ATATATATAATATATAATTTTTGAAAACATTTTGAAA
Found at i:1036507 original size:39 final size:37
Alignment explanation
Indices: 1036335--1036509 Score: 199
Period size: 39 Copynumber: 4.5 Consensus size: 37
1036325 ACTTATTTAG
1036335 TATATATATTAATATAATATAGTTTTTGAAAACATTTTGAA
1 TATATATA-T-ATAT-ATATAG-TTTTGAAAACATTTTGAA
* * * *
1036376 AACATATATA-ATATATAATTTTTGAAATCATTTTGAA
1 TATATATATATATATAT-AGTTTTGAAAACATTTTGAA
* *
1036413 AATATATATATAATAAATAGTTTTGAAAACATTTTCGAA
1 TATATATATAT-ATATATAGTTTTGAAAACATTTT-GAA
1036452 TATATATATATAATATATAGTTTTGAAAACATTTTTTGAA
1 TATATATATAT-ATATATAGTTTTGAAAACA--TTTTGAA
1036492 TATATATATATATATATA
1 TATATATATATATATATA
1036510 TATAATGTAT
Statistics
Matches: 118, Mismatches: 10, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
37 30 0.25
38 18 0.15
39 45 0.38
40 15 0.13
41 10 0.08
ACGTcount: A:0.46, C:0.03, G:0.06, T:0.45
Consensus pattern (37 bp):
TATATATATATATATATAGTTTTGAAAACATTTTGAA
Found at i:1036507 original size:50 final size:49
Alignment explanation
Indices: 1036450--1036556 Score: 169
Period size: 50 Copynumber: 2.2 Consensus size: 49
1036440 AACATTTTCG
* *
1036450 AATATATATATATAATATATAGTTTTGAAAACATTTTTTGAATATATAT
1 AATATATATATATAATATATAATTTTGAAAACATTTTTTAAATATATAT
* *
1036499 ATATATATATATATAATGTATAATTTTGGAAACATTTTTTAAATATATAT
1 A-ATATATATATATAATATATAATTTTGAAAACATTTTTTAAATATATAT
1036549 AATATATA
1 AATATATA
1036557 GTTTTTAAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
49 8 0.15
50 45 0.85
ACGTcount: A:0.46, C:0.02, G:0.06, T:0.47
Consensus pattern (49 bp):
AATATATATATATAATATATAATTTTGAAAACATTTTTTAAATATATAT
Found at i:1036605 original size:7 final size:7
Alignment explanation
Indices: 1036593--1036636 Score: 58
Period size: 7 Copynumber: 6.6 Consensus size: 7
1036583 ACTTATTTCT
1036593 TTTTTTA
1 TTTTTTA
1036600 TTTTTTA
1 TTTTTTA
1036607 TTTGTTTA
1 TTT-TTTA
1036615 --TTTTA
1 TTTTTTA
1036620 TTTTTTA
1 TTTTTTA
1036627 -TTTTTA
1 TTTTTTA
1036633 TTTT
1 TTTT
1036637 ACTTTTCAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
5 4 0.12
6 7 0.21
7 18 0.55
8 4 0.12
ACGTcount: A:0.14, C:0.00, G:0.02, T:0.84
Consensus pattern (7 bp):
TTTTTTA
Found at i:1036615 original size:27 final size:26
Alignment explanation
Indices: 1036585--1036635 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 26
1036575 TATAGTTTAC
1036585 TTATTTCT-TTTTTTATTTTTTATTTGT
1 TTATTT-TATTTTTTA-TTTTTATTTGT
1036612 TTATTTTATTTTTTATTTTTATTT
1 TTATTTTATTTTTTATTTTTATTT
1036636 TACTTTTCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.14, C:0.02, G:0.02, T:0.82
Consensus pattern (26 bp):
TTATTTTATTTTTTATTTTTATTTGT
Found at i:1036630 original size:12 final size:13
Alignment explanation
Indices: 1036593--1036636 Score: 63
Period size: 13 Copynumber: 3.3 Consensus size: 13
1036583 ACTTATTTCT
1036593 TTTTTTATTTTTTA
1 TTTTTTA-TTTTTA
1036607 TTTGTTTA-TTTTA
1 TTT-TTTATTTTTA
1036620 TTTTTTATTTTTA
1 TTTTTTATTTTTA
1036633 TTTT
1 TTTT
1036637 ACTTTTCAGG
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
12 4 0.14
13 17 0.61
14 3 0.11
15 4 0.14
ACGTcount: A:0.14, C:0.00, G:0.02, T:0.84
Consensus pattern (13 bp):
TTTTTTATTTTTA
Found at i:1044995 original size:23 final size:24
Alignment explanation
Indices: 1044940--1045017 Score: 131
Period size: 25 Copynumber: 3.2 Consensus size: 24
1044930 TTTGTCAAAG
1044940 AGCTATAACTATGAAAGCATTAAA
1 AGCTATAACTATGAAAGCATTAAA
1044964 GAGCTATAACTATGAAAGCATT-AA
1 -AGCTATAACTATGAAAGCATTAAA
*
1044988 AGCTATAACTCTGAAAGCATTAAA
1 AGCTATAACTATGAAAGCATTAAA
1045012 AGCTAT
1 AGCTAT
1045018 TAATTCTTTT
Statistics
Matches: 51, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
23 20 0.39
24 10 0.20
25 21 0.41
ACGTcount: A:0.46, C:0.14, G:0.14, T:0.26
Consensus pattern (24 bp):
AGCTATAACTATGAAAGCATTAAA
Found at i:1046861 original size:2 final size:2
Alignment explanation
Indices: 1046854--1046887 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
1046844 AACATTTTGA
1046854 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1046888 GTTTTGAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:1046915 original size:34 final size:34
Alignment explanation
Indices: 1046872--1046997 Score: 125
Period size: 34 Copynumber: 3.8 Consensus size: 34
1046862 ATATATATAT
** *
1046872 ATATATATAATATATAGTTTTGAATTTTTTTTCA
1 ATATATATAATATATAGTTTTGAAAATTTTTTAA
* * * *
1046906 ATATATATAATATATAATTTGGAACATTTTTGAA
1 ATATATATAATATATAGTTTTGAAAATTTTTTAA
* *
1046940 ATATATAT-A-ATATAGTTTT-AAAACGTTTTTGA
1 ATATATATAATATATAGTTTTGAAAA-TTTTTTAA
*
1046972 A-ATATATAATATATAGTTTTAAAAAT
1 ATATATATAATATATAGTTTTGAAAAT
1046998 GATTTACCGT
Statistics
Matches: 75, Mismatches: 13, Indels: 9
0.77 0.13 0.09
Matches are distributed among these distances:
31 9 0.12
32 15 0.20
33 11 0.15
34 40 0.53
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (34 bp):
ATATATATAATATATAGTTTTGAAAATTTTTTAA
Found at i:1046974 original size:33 final size:33
Alignment explanation
Indices: 1046905--1046995 Score: 114
Period size: 33 Copynumber: 2.7 Consensus size: 33
1046895 ATTTTTTTTC
**
1046905 AATATATATAATATA-TAATTTGGAACATTTTTGA
1 AATATATATAATATAGT--TTTAAAACATTTTTGA
*
1046939 AATATATATAATATAGTTTTAAAACGTTTTTGA
1 AATATATATAATATAGTTTTAAAACATTTTTGA
1046972 AATATATA-ATATATAGTTTTAAAA
1 AATATATATA-ATATAGTTTTAAAA
1046996 ATGATTTACC
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
32 1 0.02
33 35 0.67
34 15 0.29
35 1 0.02
ACGTcount: A:0.46, C:0.02, G:0.08, T:0.44
Consensus pattern (33 bp):
AATATATATAATATAGTTTTAAAACATTTTTGA
Found at i:1048206 original size:14 final size:15
Alignment explanation
Indices: 1048187--1048224 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
1048177 AATTTAAAAT
1048187 TTTTATTTT-CCTAA
1 TTTTATTTTACCTAA
**
1048201 TTTTATTTTATTTAA
1 TTTTATTTTACCTAA
1048216 TTTTATTTT
1 TTTTATTTT
1048225 TAATGTTGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTTATTTTACCTAA
Found at i:1048228 original size:27 final size:28
Alignment explanation
Indices: 1048187--1048242 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
1048177 AATTTAAAAT
* *
1048187 TTTTATTTTCCTAATTTTATTTTATTTAA
1 TTTTATTTT-CTAATGTTATTATATTTAA
*
1048216 TTTTATTTT-TAATGTTGTTATATTTAA
1 TTTTATTTTCTAATGTTATTATATTTAA
1048243 CTCTTTTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 15 0.62
29 9 0.38
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.68
Consensus pattern (28 bp):
TTTTATTTTCTAATGTTATTATATTTAA
Found at i:1048259 original size:16 final size:16
Alignment explanation
Indices: 1048233--1048266 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 16
1048223 TTTAATGTTG
1048233 TTATATTTAACTCTTTT
1 TTATATTTAAC-CTTTT
1048250 TTAT-TTTAACCTTTT
1 TTATATTTAACCTTTT
1048265 TT
1 TT
1048267 CCTATTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
16 6 0.35
17 4 0.24
ACGTcount: A:0.21, C:0.12, G:0.00, T:0.68
Consensus pattern (16 bp):
TTATATTTAACCTTTT
Found at i:1048364 original size:19 final size:19
Alignment explanation
Indices: 1048336--1048382 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
1048326 AAATGTAAGT
*
1048336 AATTTGAATCGAGTCTTTA
1 AATTTAAATCGAGTCTTTA
1048355 AATTTAAATCGAGTCTTTA
1 AATTTAAATCGAGTCTTTA
1048374 AATTTAAAT
1 AATTTAAAT
1048383 TTTAATTTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.38, C:0.09, G:0.11, T:0.43
Consensus pattern (19 bp):
AATTTAAATCGAGTCTTTA
Found at i:1049578 original size:2 final size:2
Alignment explanation
Indices: 1049571--1049600 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
1049561 TTAACAATTT
1049571 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1049601 AAAGTAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1050616 original size:255 final size:254
Alignment explanation
Indices: 1050165--1050918 Score: 1388
Period size: 255 Copynumber: 3.0 Consensus size: 254
1050155 CACAAATTAG
* *
1050165 CCGTACTATAAGCATTAATATCAAAAGCAACAGTTTCCATGTTCTTTAGCCCCTCAAAACCCATA
1 CCGTACTATAAGCATTAACATCAAAAGCAGCAGTTTCCATGTTCTTTAGCCCCTCAAAACCCATA
* *
1050230 TTAGGCGCACTATGAGCATTAACATCGAAAGTAACACAACAATCCAGCCCTGCGACTACATGCTC
66 TTAGGCGCACTATGAGCATTAACATCGAAAGCAACACAACAATCCAGCTCT-CGACTACATGCTC
* *
1050295 CCTACAATCTGTCTCCATAACATTCGTATAGCCACTCCTCTGACAAATTGAAGCATGCGTTGCTA
130 CCTACAATCTGTCTCCATAACATTCGTAGAGCCACTCCTCTGACAAATTGAAGCATGCGCTGCTA
1050360 CCCCATCACGAACTGTCTGGGAACCAACTCCAACATCCCATTAGTTTACTGTCTGGGAAC
195 CCCCATCACGAACTGTCTGGGAACCAACTCCAACATCCCATTAGTTTACTGTCTGGGAAC
1050420 CCGTACTATAAGCATTAACATCAAAAGCAGCAGTTTCCATGTTCTTTAGCCCCTCAAAACCCATA
1 CCGTACTATAAGCATTAACATCAAAAGCAGCAGTTTCCATGTTCTTTAGCCCCTCAAAACCCATA
1050485 TTAGGCGCACTATGAGCATTAACATCGAAAGCAACACAACAATCCAGCTCTACGACTACATGCTC
66 TTAGGCGCACTATGAGCATTAACATCGAAAGCAACACAACAATCCAGCTCT-CGACTACATGCTC
*
1050550 CCTACAATCTGTCTCCATAACATTCGTAGAGCCACTCCTTTGACAAATTGAAGCATGCGCTGCTA
130 CCTACAATCTGTCTCCATAACATTCGTAGAGCCACTCCTCTGACAAATTGAAGCATGCGCTGCTA
1050615 CCCCATCACGAACTGTCTGGGAACCAACTCCAACATCCCATTAGTTTACTGTCTGGGAAC
195 CCCCATCACGAACTGTCTGGGAACCAACTCCAACATCCCATTAGTTTACTGTCTGGGAAC
* *
1050675 CCATACTATAAGCATTAACATCAAAAGCAGCAGTTTTCATGTTCTTTAGCCCCTCAAAACCCATA
1 CCGTACTATAAGCATTAACATCAAAAGCAGCAGTTTCCATGTTCTTTAGCCCCTCAAAACCCATA
1050740 TTAGGCGCACTATGAGCATTAACATCGAAAGCAACACAACAATCCAGCTCT-G-CT-CATGCTCC
66 TTAGGCGCACTATGAGCATTAACATCGAAAGCAACACAACAATCCAGCTCTCGACTACATGCTCC
1050802 CTACAATCTGTCTCCATAACATTCGTAGAGCCACTCCTCTGACAAATTGAAGCATGCGCTGCTAC
131 CTACAATCTGTCTCCATAACATTCGTAGAGCCACTCCTCTGACAAATTGAAGCATGCGCTGCTAC
1050867 CCCATCACGAACTGTCTGGGAACCAACTCCAACATCCCATTAGTTTACTGTC
196 CCCATCACGAACTGTCTGGGAACCAACTCCAACATCCCATTAGTTTACTGTC
1050919 AGGCGGGTCT
Statistics
Matches: 488, Mismatches: 11, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
251 124 0.25
252 2 0.00
253 1 0.00
255 361 0.74
ACGTcount: A:0.31, C:0.30, G:0.14, T:0.25
Consensus pattern (254 bp):
CCGTACTATAAGCATTAACATCAAAAGCAGCAGTTTCCATGTTCTTTAGCCCCTCAAAACCCATA
TTAGGCGCACTATGAGCATTAACATCGAAAGCAACACAACAATCCAGCTCTCGACTACATGCTCC
CTACAATCTGTCTCCATAACATTCGTAGAGCCACTCCTCTGACAAATTGAAGCATGCGCTGCTAC
CCCATCACGAACTGTCTGGGAACCAACTCCAACATCCCATTAGTTTACTGTCTGGGAAC
Found at i:1052438 original size:21 final size:22
Alignment explanation
Indices: 1052412--1052470 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
1052402 TCTCTCTTTT
1052412 TAAAAATAAATAAAAATGT-AA
1 TAAAAATAAATAAAAATGTGAA
*
1052433 TAAAAA-AGAATTAAAA-GTGAA
1 TAAAAATA-AATAAAAATGTGAA
* *
1052454 TAAAATTCAATAAAAAT
1 TAAAAATAAATAAAAAT
1052471 AGAATGTAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
20 3 0.10
21 27 0.90
ACGTcount: A:0.68, C:0.02, G:0.07, T:0.24
Consensus pattern (22 bp):
TAAAAATAAATAAAAATGTGAA
Found at i:1058544 original size:64 final size:62
Alignment explanation
Indices: 1058473--1058635 Score: 170
Period size: 64 Copynumber: 2.5 Consensus size: 62
1058463 CGGTGCACTA
* *
1058473 AGAGTGCATCTATGCAAGAAGTGCATTCGATGTTTGAA-AAAT-AGCCTGGTGCATCGATGCATG
1 AGAGTGCATCGATGCAAGAA-TGCATTCGATGTTTGAATAAATCAG---AGTGCATCGATGCATG
1058536 G
62 G
** *
1058537 ATTGTGCATCGATGCATCA-AATGCATTCGATGTTTTAATTAAATCAGAGTGCATCGATGCATGG
1 AGAGTGCATCGATGCA--AGAATGCATTCGATGTTTGAA-TAAATCAGAGTGCATCGATGCATGG
* *
1058601 AGAGTGCATCGGTGCATGGAATGCATTCGATGTTT
1 AGAGTGCATCGATGCA-AGAATGCATTCGATGTTT
1058636 CAATTTATTC
Statistics
Matches: 83, Mismatches: 10, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
64 74 0.89
65 2 0.02
66 5 0.06
67 2 0.02
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (62 bp):
AGAGTGCATCGATGCAAGAATGCATTCGATGTTTGAATAAATCAGAGTGCATCGATGCATGG
Found at i:1058606 original size:19 final size:19
Alignment explanation
Indices: 1058582--1058632 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
1058572 TAATTAAATC
1058582 AGAGTGCATCGATGCATGG
1 AGAGTGCATCGATGCATGG
*
1058601 AGAGTGCATCGGTGCATGG
1 AGAGTGCATCGATGCATGG
1058620 A-A-TGCATTCGATG
1 AGAGTGCA-TCGATG
1058633 TTTCAATTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 4 0.14
18 6 0.21
19 19 0.66
ACGTcount: A:0.25, C:0.16, G:0.35, T:0.24
Consensus pattern (19 bp):
AGAGTGCATCGATGCATGG
Found at i:1058670 original size:21 final size:21
Alignment explanation
Indices: 1058646--1058685 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
1058636 CAATTTATTC
1058646 ATTGATGCATCGATGCATGGT
1 ATTGATGCATCGATGCATGGT
*
1058667 ATTGATGCATCGGTGCATG
1 ATTGATGCATCGATGCATG
1058686 CCTTTGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.33
Consensus pattern (21 bp):
ATTGATGCATCGATGCATGGT
Found at i:1059344 original size:34 final size:34
Alignment explanation
Indices: 1059305--1059411 Score: 151
Period size: 34 Copynumber: 3.1 Consensus size: 34
1059295 TAAGTTGAAA
* * *
1059305 TTTAATGTTAAATTTCGAATACTATAATTTATAT
1 TTTAATTTTAAATTTTGAATAATATAATTTATAT
* *
1059339 TTTAATTTTAAATTTTGAATAATATTATTTTTAT
1 TTTAATTTTAAATTTTGAATAATATAATTTATAT
* *
1059373 TTTTATTTTAAATTTTGAATAATATAATTTGTAT
1 TTTAATTTTAAATTTTGAATAATATAATTTATAT
1059407 TTTAA
1 TTTAA
1059412 AAACATTGAT
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 64 1.00
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.57
Consensus pattern (34 bp):
TTTAATTTTAAATTTTGAATAATATAATTTATAT
Found at i:1060036 original size:42 final size:41
Alignment explanation
Indices: 1059930--1060038 Score: 155
Period size: 42 Copynumber: 2.6 Consensus size: 41
1059920 TATGGTATAA
* *
1059930 AACCCTGCGGGCTAGGCATATAACCTGGCGGGCTAGGAATGT
1 AACCCTGCGGGCTAGG-ATGTAACCTGGCGGGCTAAGAATGT
*
1059972 AACCCTGCGGGCTCAGAATGTAACCTGGCGGGCTAAGAATGT
1 AACCCTGCGGGCT-AGGATGTAACCTGGCGGGCTAAGAATGT
*
1060014 AACCCTGCGGGCTTGGAGTGTAACC
1 AACCCTGCGGGCTAGGA-TGTAACC
1060039 CTGTGGAGAT
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
41 2 0.03
42 56 0.93
43 2 0.03
ACGTcount: A:0.24, C:0.25, G:0.32, T:0.19
Consensus pattern (41 bp):
AACCCTGCGGGCTAGGATGTAACCTGGCGGGCTAAGAATGT
Found at i:1060039 original size:21 final size:21
Alignment explanation
Indices: 1059930--1060041 Score: 131
Period size: 21 Copynumber: 5.3 Consensus size: 21
1059920 TATGGTATAA
* *
1059930 AACCCTGCGGGCTAGGCATAT
1 AACCCTGCGGGCTAGGAATGT
1059951 AA-CCTGGCGGGCTAGGAATGT
1 AACCCT-GCGGGCTAGGAATGT
1059972 AACCCTGCGGGCTCA-GAATGT
1 AACCCTGCGGGCT-AGGAATGT
*
1059993 AA-CCTGGCGGGCTAAGAATGT
1 AACCCT-GCGGGCTAGGAATGT
* *
1060014 AACCCTGCGGGCTTGGAGTGT
1 AACCCTGCGGGCTAGGAATGT
1060035 AACCCTG
1 AACCCTG
1060042 TGGAGATGGC
Statistics
Matches: 80, Mismatches: 5, Indels: 12
0.82 0.05 0.12
Matches are distributed among these distances:
20 7 0.09
21 66 0.82
22 7 0.09
ACGTcount: A:0.23, C:0.25, G:0.32, T:0.20
Consensus pattern (21 bp):
AACCCTGCGGGCTAGGAATGT
Found at i:1060072 original size:21 final size:21
Alignment explanation
Indices: 1060048--1060095 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
1060038 CCTGTGGAGA
*
1060048 TGGCATATGAACTGGTGGGCT
1 TGGCATATGAACTGGAGGGCT
*
1060069 TGGCATATGAAGTGGAGGGCT
1 TGGCATATGAACTGGAGGGCT
*
1060090 GGGCAT
1 TGGCAT
1060096 GTACCCCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.21, C:0.12, G:0.42, T:0.25
Consensus pattern (21 bp):
TGGCATATGAACTGGAGGGCT
Found at i:1061899 original size:36 final size:33
Alignment explanation
Indices: 1061833--1061899 Score: 80
Period size: 36 Copynumber: 1.9 Consensus size: 33
1061823 AAATATTATT
* *
1061833 TTAATAAAAAAAAATAATATTTACATAAATATA
1 TTAATAAAAAAAAATAATATTTAAAAAAATATA
*
1061866 TTAATATAAAATATAATAACTATTTAAAAAAATA
1 TTAATA-AAAA-AAAATAA-TATTTAAAAAAATA
1061900 CTAACATAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 6 0.21
34 4 0.14
35 6 0.21
36 12 0.43
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (33 bp):
TTAATAAAAAAAAATAATATTTAAAAAAATATA
Found at i:1064191 original size:26 final size:26
Alignment explanation
Indices: 1064140--1064192 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1064130 TCAAAGAATG
* *
1064140 AAATATTAAAATAAAAAATGTTATAA
1 AAATATTAAAATAAAAAATATAATAA
* *
1064166 AAATGTTAAAGTAAAAAATATAATAA
1 AAATATTAAAATAAAAAATATAATAA
1064192 A
1 A
1064193 TGAAGAAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (26 bp):
AAATATTAAAATAAAAAATATAATAA
Found at i:1064315 original size:16 final size:16
Alignment explanation
Indices: 1064285--1064314 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
1064275 AAAAAGTGAG
1064285 AAAATAAAGATAAAAC
1 AAAATAAAGATAAAAC
1064301 AAAAT-AAGATAAAA
1 AAAATAAAGATAAAA
1064315 AAGAGAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.77, C:0.03, G:0.07, T:0.13
Consensus pattern (16 bp):
AAAATAAAGATAAAAC
Done.