genome.fa.s9037.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009037.1 Hibiscus syriacus cultivar Beakdansim tig00112444_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144382

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4742--4803	21	2.9	21	80	9	72	20	35	25	17	1.95
8262--8300	14	2.8	14	80	0	51	35	41	0	23	1.55
8330--8391	20	3.2	20	83	4	72	46	6	8	38	1.59
8375--8478	48	2.1	49	82	3	120	49	12	6	31	1.67
8891--8945	2	27.0	2	83	10	67	50	3	1	43	1.30
8891--8945	15	3.4	17	82	14	71	50	3	1	43	1.30
9029--9093	7	9.3	7	77	0	58	46	32	0	21	1.52
9414--9472	17	3.3	19	83	9	63	47	6	6	38	1.57
9441--9474	9	3.9	9	84	7	52	55	5	0	38	1.24
9434--9472	17	2.2	18	95	4	71	51	5	2	41	1.38
9863--9912	15	3.4	15	81	13	59	40	0	2	58	1.10
9873--9910	13	2.8	13	92	8	58	44	0	0	55	0.99
9950--9988	2	20.0	2	92	5	62	53	0	0	46	1.00
10072--10132	7	8.7	7	78	7	52	47	29	0	22	1.52
10072--10132	14	4.4	14	77	8	61	47	29	0	22	1.52
10076--10132	21	2.8	20	78	5	60	45	29	0	24	1.53
10296--10344	23	2.1	23	92	7	82	46	4	0	48	1.20
15577--15711	67	2.0	67	97	0	252	34	13	24	28	1.93
16775--16906	43	3.1	43	81	3	151	36	18	13	31	1.90
24847--24884	19	2.0	19	100	0	76	26	15	31	26	1.96
26985--27009	13	1.9	13	100	0	50	56	0	12	32	1.36
36435--36473	16	2.3	18	82	13	55	30	20	25	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36478--36515	20	1.9	20	88	0	58	34	13	26	26	1.93
37048--37099	23	2.4	22	87	12	72	21	15	30	32	1.94
37048--37106	23	2.7	21	82	10	57	20	18	28	32	1.96
43081--43115	7	5.1	7	86	6	54	62	0	0	37	0.95
43178--43234	27	2.1	27	86	0	78	56	0	3	40	1.17
43191--43237	2	24.0	2	82	4	51	51	0	4	44	1.21
44405--44432	3	9.3	3	100	0	56	67	0	0	32	0.91
44438--44513	31	2.4	31	80	10	91	47	5	2	44	1.39
44463--44675	71	3.0	71	77	15	210	45	6	4	43	1.49
44483--44703	35	6.1	35	74	17	152	44	6	4	44	1.51
45319--45499	84	2.1	86	87	4	260	23	21	25	28	1.99
45509--45577	29	2.5	28	92	4	113	39	11	17	31	1.85
45565--45797	36	6.4	36	81	7	254	38	12	21	28	1.89
45728--45805	36	2.2	36	85	0	102	43	15	14	26	1.85
45565--45797	108	2.1	110	83	7	296	38	12	21	28	1.89
45801--46412	84	7.4	84	80	6	642	24	20	25	29	1.99
45812--46394	165	3.5	166	80	6	610	24	20	25	29	1.99
45801--46434	249	2.5	249	88	4	906	24	20	25	29	1.99
49784--49829	19	2.4	19	96	0	83	65	10	13	10	1.48
51580--51632	20	2.6	21	75	19	58	71	7	3	16	1.24
52894--52934	3	13.3	3	94	5	73	68	0	0	31	0.90
52895--52938	10	4.3	10	83	16	54	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53127--53207	35	2.2	36	82	10	94	44	7	4	43	1.54
61880--61955	30	2.6	29	81	8	91	47	11	2	38	1.54
63959--64000	20	2.0	21	90	4	68	19	21	14	45	1.85
68601--68639	2	20.0	2	94	5	71	0	51	0	48	1.00
68735--68771	2	19.0	2	94	5	67	48	0	0	51	1.00
69237--69268	2	16.0	2	100	0	64	50	0	0	50	1.00
69683--69769	38	2.3	38	83	0	120	55	16	2	26	1.53
76883--77019	29	4.7	29	77	6	125	41	2	0	54	1.20
77040--77182	45	2.9	48	78	14	141	37	3	2	57	1.28
77221--77284	23	2.7	24	85	4	76	62	0	1	35	1.05
80707--80756	21	2.4	21	96	0	91	40	22	12	26	1.88
81999--82044	20	2.3	20	96	0	83	34	13	30	21	1.91
82249--82345	21	4.6	21	87	2	133	46	19	20	13	1.83
82249--82345	42	2.3	42	91	3	151	46	19	20	13	1.83
86819--87341	37	14.1	36	71	12	276	36	22	17	23	1.95
86809--87223	37	11.2	37	74	12	309	37	21	16	23	1.94
87337--88287	216	4.4	215	92	2	1541	33	15	20	31	1.93
88186--88310	42	3.0	41	75	2	135	26	20	22	30	1.98
88191--88322	41	3.2	41	74	5	122	25	21	21	31	1.98
88186--88338	82	1.9	83	87	1	227	26	19	21	32	1.97
88368--88519	57	2.7	58	82	7	179	32	17	21	28	1.96
88438--88574	55	2.5	54	79	10	125	34	16	23	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97733--97789	3	19.3	3	94	3	98	35	0	0	64	0.93
98234--98269	15	2.4	15	90	9	56	77	2	19	0	0.88
99133--99178	13	3.5	13	82	11	58	41	0	0	58	0.98
99787--99811	7	3.6	7	100	0	50	68	0	0	32	0.90
110822--110866	16	2.8	16	83	10	56	28	8	6	55	1.56
111590--111988	82	4.9	82	98	0	764	28	13	20	37	1.91
112725--113491	112	6.8	112	94	3	1263	37	11	20	30	1.88
113745--113802	3	19.3	3	100	0	116	32	0	0	67	0.91
114247--114282	15	2.4	15	90	9	56	77	2	19	0	0.88
115146--115191	13	3.5	13	82	11	58	41	0	0	58	0.98
118789--118918	26	4.9	26	70	11	93	36	7	15	40	1.76
118772--119035	80	3.2	79	85	10	314	36	7	15	40	1.75
118854--119088	93	2.5	93	93	0	391	36	7	14	41	1.75
121267--121299	13	2.4	14	90	5	50	9	21	48	21	1.77
124518--124588	35	2.0	35	91	0	115	49	9	12	28	1.73
125996--126056	23	2.7	23	84	0	59	27	26	27	18	1.98
127553--127634	21	3.9	21	93	1	137	18	26	24	30	1.98
127553--127634	42	1.9	43	97	2	157	18	26	24	30	1.98
132995--133062	30	2.3	30	97	0	127	25	4	30	39	1.75
137340--137422	37	2.2	37	95	2	148	30	7	9	53	1.61

Tables:   1

The End!