genome.fa.s9038.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009038.1 Hibiscus syriacus cultivar Beakdansim tig00112445_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  174032

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8495--8539	16	2.8	16	83	10	56	28	8	6	55	1.56
9264--9663	82	4.9	82	98	0	764	28	13	20	37	1.91
10399--11163	223	3.4	221	93	3	1237	37	11	20	30	1.88
10399--11163	112	6.8	112	94	3	1254	37	11	20	30	1.88
11416--11475	3	20.3	3	96	3	113	33	0	0	66	0.92
11918--11953	15	2.4	15	90	9	56	77	2	19	0	0.88
12812--12857	13	3.5	13	82	11	58	41	0	0	58	0.98
16460--16590	26	4.9	26	69	13	86	37	7	15	39	1.76
16443--16708	81	3.2	80	84	10	311	37	7	15	40	1.75
16526--16762	94	2.5	93	93	0	384	36	7	14	41	1.75
18943--18975	13	2.4	14	90	5	50	9	21	48	21	1.77
22204--22274	35	2.0	35	91	0	115	49	9	12	28	1.73
23684--23744	23	2.7	23	84	0	59	27	26	27	18	1.98
25247--25328	21	3.9	21	93	1	137	18	26	24	30	1.98
25247--25328	42	1.9	43	97	2	157	18	26	24	30	1.98
30700--30767	30	2.3	30	97	0	127	25	4	30	39	1.75
35088--35178	41	2.2	41	98	0	173	28	6	8	56	1.55
47392--47552	78	2.1	78	84	0	205	34	15	21	28	1.94
49344--49382	20	2.0	20	90	10	62	38	5	15	41	1.69
49396--49435	20	2.0	21	85	14	57	37	5	12	45	1.64
49343--49492	53	2.9	52	95	3	266	34	6	12	48	1.65
49449--49488	20	2.0	20	95	0	71	37	5	12	45	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54059--54149	20	4.9	20	67	22	65	35	5	14	45	1.68
54058--54207	53	2.9	52	95	3	266	33	6	12	48	1.66
54164--54203	20	2.0	20	95	0	71	37	5	12	45	1.64
57771--57816	22	2.0	22	83	12	56	52	13	2	32	1.52
61605--61648	9	4.8	9	88	5	70	0	4	9	86	0.70
61598--61648	19	2.7	19	87	3	77	0	5	11	82	0.83
64567--64687	60	2.0	60	96	0	224	44	17	10	27	1.81
74951--75040	47	1.9	47	97	0	171	43	7	10	38	1.67
75283--75315	17	1.9	17	93	0	57	66	0	0	33	0.92
75473--75532	3	20.3	3	96	3	113	33	0	0	66	0.92
76470--76515	20	2.3	20	88	0	65	28	8	21	41	1.83
76542--76597	20	2.8	20	86	2	69	35	19	8	35	1.83
77666--77691	6	4.3	6	100	0	52	30	0	53	15	1.42
77516--77720	102	2.0	102	96	1	376	33	12	33	21	1.90
80024--80102	37	2.1	38	90	2	124	48	11	2	37	1.53
80426--80475	23	2.2	23	88	0	73	38	6	22	34	1.78
80484--81196	198	3.6	193	81	9	738	30	15	14	40	1.87
83771--84499	199	3.8	182	78	11	698	27	15	15	41	1.87
83913--84520	199	3.1	199	86	2	898	27	15	14	41	1.87
84490--84536	21	2.2	21	92	0	76	25	14	14	44	1.84
85930--85970	3	13.7	3	89	0	64	29	31	0	39	1.57
87124--87164	15	2.8	14	82	10	55	26	2	48	21	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87513--88212	199	3.5	199	93	0	1204	27	14	15	42	1.86
88558--88606	19	2.6	19	93	3	82	57	10	0	32	1.32
90073--90110	18	2.1	18	95	0	67	5	39	0	55	1.23
90800--90847	24	2.1	23	85	14	64	45	6	2	45	1.40
91816--91854	18	2.2	18	86	9	53	41	7	5	46	1.55
92105--92153	19	2.6	20	81	12	68	38	16	0	44	1.48
92537--93035	182	2.7	182	90	1	779	27	15	12	44	1.83
92874--93195	163	2.0	163	87	1	466	27	12	13	46	1.79
93037--93905	182	4.8	183	87	1	1140	27	14	13	44	1.82
94108--94150	20	2.2	20	100	0	86	23	25	9	41	1.84
100536--100604	28	2.4	29	83	9	88	40	0	15	43	1.47
100581--100777	29	6.8	29	80	1	182	38	5	9	47	1.58
104770--104815	2	23.0	2	100	0	92	50	0	0	50	1.00
108006--108032	4	6.8	4	100	0	54	22	0	0	77	0.76
109261--109300	19	2.1	19	90	0	62	17	25	25	32	1.97
111484--111568	41	2.1	41	93	0	143	34	4	20	41	1.73
112079--112107	2	14.5	2	100	0	58	51	0	0	48	1.00
121447--122151	355	2.0	355	97	0	1329	32	15	16	36	1.90
124170--124242	36	2.0	36	100	0	146	21	10	10	56	1.65
141761--141805	3	15.0	3	100	0	90	33	0	0	66	0.92
141813--141909	3	32.0	3	83	4	106	57	0	2	40	1.10
141815--141909	27	3.5	27	95	4	165	57	0	2	40	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142150--142915	113	6.8	113	88	3	1059	28	18	15	37	1.91
142150--142916	227	3.4	227	91	3	1164	28	18	15	37	1.91
143640--143876	92	2.6	92	95	0	438	36	23	14	24	1.93
145237--145278	9	4.6	9	82	5	57	0	16	0	83	0.65
145237--145273	19	1.9	20	94	5	67	0	18	0	81	0.70
145234--145278	19	2.4	19	85	7	65	0	20	0	80	0.72
155371--155395	9	2.8	9	100	0	50	52	0	0	48	1.00
158085--158145	3	20.0	3	81	6	61	57	0	1	40	1.08
163375--163418	23	1.9	23	85	0	61	22	29	18	29	1.97
164343--164395	19	2.8	19	94	0	88	26	16	13	43	1.85
169740--169784	21	2.1	21	87	0	63	31	28	24	15	1.96
171609--171653	23	2.0	23	86	0	63	20	26	26	26	1.99
173738--173791	22	2.5	22	96	0	99	38	7	20	33	1.80

Tables:   1

The End!