Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009039.1 Hibiscus syriacus cultivar Beakdansim tig00112446_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 125775
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:4759 original size:22 final size:22
Alignment explanation
Indices: 4733--4814 Score: 87
Period size: 23 Copynumber: 3.7 Consensus size: 22
4723 TTAGTACAGA
4733 GGGAATCGATACCCCCTTGAAG
1 GGGAATCGATACCCCCTTGAAG
* *
4755 GGGAA-CTGATTCCCCATTTGAAG
1 GGGAATC-GATACCCC-CTTGAAG
* * *
4778 GGGAACCGATTCCCCCTTGTA-
1 GGGAATCGATACCCCCTTGAAG
4799 GGGAATCGATACCCCC
1 GGGAATCGATACCCCC
4815 CTGGGGTTCT
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
21 15 0.29
22 16 0.31
23 19 0.37
24 1 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (22 bp):
GGGAATCGATACCCCCTTGAAG
Found at i:4815 original size:22 final size:23
Alignment explanation
Indices: 4733--4816 Score: 77
Period size: 22 Copynumber: 3.8 Consensus size: 23
4723 TTAGTACAGA
4733 GGGAATCGATA-CCCCCTTGAAG
1 GGGAATCGATACCCCCCTTGAAG
* **
4755 GGGAA-CTGATTCCCCATTTGAAG
1 GGGAATC-GATACCCCCCTTGAAG
* * *
4778 GGGAACCGAT-TCCCCCTTGTA-
1 GGGAATCGATACCCCCCTTGAAG
4799 GGGAATCGATACCCCCCT
1 GGGAATCGATACCCCCCT
4817 GGGGTTCTGG
Statistics
Matches: 49, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
21 10 0.20
22 21 0.43
23 17 0.35
24 1 0.02
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (23 bp):
GGGAATCGATACCCCCCTTGAAG
Found at i:6384 original size:18 final size:18
Alignment explanation
Indices: 6361--6401 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
6351 CAGAACGCAC
6361 GAGGAACAAGCACGAG-CA
1 GAGGAACAAGCAC-AGCCA
6379 GAGGAACAAGCACAGCCA
1 GAGGAACAAGCACAGCCA
6397 GAGGA
1 GAGGA
6402 TCAAATGCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 2 0.09
18 20 0.91
ACGTcount: A:0.44, C:0.22, G:0.34, T:0.00
Consensus pattern (18 bp):
GAGGAACAAGCACAGCCA
Found at i:13203 original size:312 final size:311
Alignment explanation
Indices: 12584--13206 Score: 878
Period size: 312 Copynumber: 2.0 Consensus size: 311
12574 TAGCTCTTAC
*
12584 GAACAACCAAAATAAGCCAAGAGGGGGTGAATTTGCCTTTTAAGAAATTTGTAGAAGCAACCGAA
1 GAACAACCAAAATAAGCCAAGAGGGGGTGAATTGGCCTTTTAAGAAATTTGTAGAAGCAACCGAA
*
12649 AAATAAAACATTTTGCACAACGATTTAGAGTGGTTTGACTTTCTAAACCAAAGTCTACAACATCC
66 AAATAAAACATTTTGCACAACGATTTAGAGTGGTTCGACTTTCTAAACCAAAGTCT--AACATCC
* ** * * * * * * * *
12714 ACTACTTTAGCATCATGGTATGGATTTATCAAATCCACTAGATTTTCTTACCTTTAAGGACAAGG
129 ACTACCTTAGCATCATACTAAGAATTTATAAAATCCACTAAATTGTCTTACCTTTAAAGAAAAGA
*
12779 TATAACCTTACAAACACTTCAAGGTTTATATCCCAAAACCTTGAATACACATTCTCCCAAAGAGT
194 TATAACCTTACAAACACTTCAAGGTTTATA-CCCAAAACCTTGAATACACACTCTCCCAAAGAGT
* * * *
12844 AAGTACAAATTTAGCAAACAAAAGTGAAAACCTCACAAGGCAAATATGTTTTAA
258 AAATACAAATTTAACAAACAAAAGAGAAAACCTCACAAGGAAAATATGTTTTAA
** * *
12898 GAACAACTGAAATAAGCCAAGAGGGGGTGAATTGGCCTTTTAAGAAATTTGTGGGAGCAACC-AC
1 GAACAACCAAAATAAGCCAAGAGGGGGTGAATTGGCCTTTTAAGAAATTTGTAGAAGCAACCGA-
*
12962 AAATTAAAA-ATTCTTGCACAACGATTTAGAGTGGTTCGACTTTCTAAACCAAAGTCT-ACATCC
65 AAAATAAAACATT-TTGCACAACGATTTAGAGTGGTTCGACTTTCTAAACCAAAGTCTAACATCC
*
13025 ACTACCTTAGCATCCATACTAAGAATTTCTAAAATCCACTAAATGTGT-TTACCTTTAAAGAAAA
129 ACTACCTTAGCAT-CATACTAAGAATTTATAAAATCCACTAAAT-TGTCTTACCTTTAAAGAAAA
* * *
13089 GATGTAACCTTACAAACACTTCAAGGTTTATA-CCAGAAAGCCTTGAATGCACACTCTCTCAAAG
192 GATATAACCTTACAAACACTTCAAGGTTTATACCCA-AAA-CCTTGAATACACACTCTCCCAAAG
*
13153 AGTAAATACAAATTTAACAAACAAAAGAGAAAATCTCACAAGGAAAATATGTTT
255 AGTAAATACAAATTTAACAAACAAAAGAGAAAACCTCACAAGGAAAATATGTTT
13207 GCACAAATTA
Statistics
Matches: 275, Mismatches: 28, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
310 3 0.01
311 21 0.08
312 137 0.50
313 6 0.02
314 108 0.39
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (311 bp):
GAACAACCAAAATAAGCCAAGAGGGGGTGAATTGGCCTTTTAAGAAATTTGTAGAAGCAACCGAA
AAATAAAACATTTTGCACAACGATTTAGAGTGGTTCGACTTTCTAAACCAAAGTCTAACATCCAC
TACCTTAGCATCATACTAAGAATTTATAAAATCCACTAAATTGTCTTACCTTTAAAGAAAAGATA
TAACCTTACAAACACTTCAAGGTTTATACCCAAAACCTTGAATACACACTCTCCCAAAGAGTAAA
TACAAATTTAACAAACAAAAGAGAAAACCTCACAAGGAAAATATGTTTTAA
Found at i:13504 original size:12 final size:13
Alignment explanation
Indices: 13480--13512 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
13470 ATTTGGACTT
13480 TGAATTATTTTTGA
1 TGAATT-TTTTTGA
13494 T-AATTTTTTTGA
1 TGAATTTTTTTGA
13506 TGAATTT
1 TGAATTT
13513 GATTAAGTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 8 0.44
13 9 0.50
14 1 0.06
ACGTcount: A:0.27, C:0.00, G:0.12, T:0.61
Consensus pattern (13 bp):
TGAATTTTTTTGA
Found at i:29975 original size:31 final size:31
Alignment explanation
Indices: 29937--30001 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
29927 AGGGAGTGTT
*
29937 GCAGTAGCTTGTGGAGCTATGTCGTGTAGCA
1 GCAGTAGCTTGTGGAGCTATGTCATGTAGCA
29968 GCAGTAGCTTGTGGAGCTATGTCATGTAGCA
1 GCAGTAGCTTGTGGAGCTATGTCATGTAGCA
29999 GCA
1 GCA
30002 ACAGTTAAGA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.22, C:0.17, G:0.34, T:0.28
Consensus pattern (31 bp):
GCAGTAGCTTGTGGAGCTATGTCATGTAGCA
Found at i:31191 original size:33 final size:33
Alignment explanation
Indices: 30962--31187 Score: 256
Period size: 33 Copynumber: 6.8 Consensus size: 33
30952 GTTTAGCACT
***
30962 AGGTGCCTCCAAGAGTCCCATCTCTTCATCAAA
1 AGGTGCCTCCAAGAGTCGTGTCTCTTCATCAAA
* *
30995 AGGTCCCTCTAAGAGTCGTGTCTCTTCATCAAA
1 AGGTGCCTCCAAGAGTCGTGTCTCTTCATCAAA
* *
31028 AGGTCCCTCCAAGAGTCATGTCTCTTTC-TCAAA
1 AGGTGCCTCCAAGAGTCGTGTCTC-TTCATCAAA
** * *
31061 AGGTTTCTCCAAGAGTCGTTTCTCTTTATCAAA
1 AGGTGCCTCCAAGAGTCGTGTCTCTTCATCAAA
* * * * *
31094 AGATGCCTCCAAGATTTGTGTCTCTTAACCAAA
1 AGGTGCCTCCAAGAGTCGTGTCTCTTCATCAAA
* *
31127 ATGTGCCTCCAAGAGTCGTGTCTCTTCACCAAA
1 AGGTGCCTCCAAGAGTCGTGTCTCTTCATCAAA
* *
31160 AAGTGCCTCCAAGAGTCGTGTCTTTTCA
1 AGGTGCCTCCAAGAGTCGTGTCTCTTCA
31188 CCAAGAGTTA
Statistics
Matches: 164, Mismatches: 27, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
32 2 0.01
33 159 0.97
34 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (33 bp):
AGGTGCCTCCAAGAGTCGTGTCTCTTCATCAAA
Found at i:33355 original size:21 final size:19
Alignment explanation
Indices: 33330--33376 Score: 51
Period size: 21 Copynumber: 2.4 Consensus size: 19
33320 GATGTGAGAG
33330 TCGATACTCAT-TCTAAGAGTA
1 TCGATACT-ATCTCT-AG-GTA
*
33351 TCGATAGTATCTCTAGGTA
1 TCGATACTATCTCTAGGTA
33370 TCGATAC
1 TCGATAC
33377 GCAAAGGGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 9 0.39
20 4 0.17
21 10 0.43
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (19 bp):
TCGATACTATCTCTAGGTA
Found at i:36186 original size:16 final size:16
Alignment explanation
Indices: 36165--36197 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
36155 TTGATATTGT
*
36165 GCATTTGTAAACGAGG
1 GCATTTGTAAAAGAGG
36181 GCATTTGTAAAAGAGG
1 GCATTTGTAAAAGAGG
36197 G
1 G
36198 AGCTAAGACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.09, G:0.33, T:0.24
Consensus pattern (16 bp):
GCATTTGTAAAAGAGG
Found at i:39194 original size:14 final size:15
Alignment explanation
Indices: 39165--39202 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
39155 CCAGTCACCA
*
39165 AGTCAACTCGATCTG
1 AGTCAACTCAATCTG
39180 AGTCAAC-CAATCTG
1 AGTCAACTCAATCTG
*
39194 AATCAACTC
1 AGTCAACTC
39203 GTTTGAGTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.34, C:0.29, G:0.13, T:0.24
Consensus pattern (15 bp):
AGTCAACTCAATCTG
Found at i:45814 original size:14 final size:14
Alignment explanation
Indices: 45795--45829 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
45785 TTAGCTGCAC
*
45795 CAACAGGACCTTCA
1 CAACAGCACCTTCA
45809 CAACAGCACCTTCA
1 CAACAGCACCTTCA
*
45823 CAGCAGC
1 CAACAGC
45830 CACCGTATCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.34, C:0.40, G:0.14, T:0.11
Consensus pattern (14 bp):
CAACAGCACCTTCA
Found at i:46225 original size:3 final size:3
Alignment explanation
Indices: 46217--46254 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
46207 ACCTACTCAG
* *
46217 GAC GAC GAC GGC GAC GAC GAC GAC GAC GAC GAT GAC GA
1 GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GA
46255 TGATGATGGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.29, G:0.37, T:0.03
Consensus pattern (3 bp):
GAC
Found at i:50741 original size:19 final size:21
Alignment explanation
Indices: 50698--50741 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
50688 CACTAAAATG
* *
50698 TTATATGTTCATTTTAATATT
1 TTATATGTTAATTTGAATATT
50719 TTATAT-TTAATTTGAAT-TT
1 TTATATGTTAATTTGAATATT
50738 TTAT
1 TTAT
50742 TTGAAATTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 6 0.29
20 9 0.43
21 6 0.29
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.64
Consensus pattern (21 bp):
TTATATGTTAATTTGAATATT
Found at i:52113 original size:18 final size:16
Alignment explanation
Indices: 52090--52124 Score: 52
Period size: 18 Copynumber: 2.1 Consensus size: 16
52080 AGTCTTTATG
52090 TAAATAAAGATTGATATT
1 TAAATAAA-ATT-ATATT
52108 TAAATAAAATTATATT
1 TAAATAAAATTATATT
52124 T
1 T
52125 TTTTCCGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 3 0.18
18 8 0.47
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (16 bp):
TAAATAAAATTATATT
Found at i:53049 original size:51 final size:51
Alignment explanation
Indices: 52994--53179 Score: 288
Period size: 51 Copynumber: 3.7 Consensus size: 51
52984 ACTTGTAAAC
* * *
52994 TGGTGGTGGCGGGGGTGGAGACTTGTACTTATAAGGATGTTTGGGTGGTGA
1 TGGTGGTGGTGGTGGTGGAGACTTGTACTTATAAGGATGCTTGGGTGGTGA
53045 ---TGGTGGTGGTGGTGGAGACTTGTACTTATAAGGATGCTTGGGTGGTGA
1 TGGTGGTGGTGGTGGTGGAGACTTGTACTTATAAGGATGCTTGGGTGGTGA
53093 TGGTGGTGGTGGTGGTGGAGACTTGTACTTATAAGGATGCTTGGGTGGTGA
1 TGGTGGTGGTGGTGGTGGAGACTTGTACTTATAAGGATGCTTGGGTGGTGA
* * * *
53144 TGGTGGTGGTGGTGGTGGGGACATATACTTGTAAGG
1 TGGTGGTGGTGGTGGTGGAGACTTGTACTTATAAGG
53180 TGGTGGAGGA
Statistics
Matches: 125, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
48 45 0.36
51 80 0.64
ACGTcount: A:0.16, C:0.06, G:0.46, T:0.32
Consensus pattern (51 bp):
TGGTGGTGGTGGTGGTGGAGACTTGTACTTATAAGGATGCTTGGGTGGTGA
Found at i:53062 original size:48 final size:48
Alignment explanation
Indices: 52997--53158 Score: 270
Period size: 48 Copynumber: 3.3 Consensus size: 48
52987 TGTAAACTGG
* * *
52997 TGGTGGCGGGGGTGGAGACTTGTACTTATAAGGATGTTTGGGTGGTGA
1 TGGTGGTGGTGGTGGAGACTTGTACTTATAAGGATGCTTGGGTGGTGA
53045 TGGTGGTGGTGGTGGAGACTTGTACTTATAAGGATGCTTGGGTGGTGA
1 TGGTGGTGGTGGTGGAGACTTGTACTTATAAGGATGCTTGGGTGGTGA
53093 TGGTGGTGGTGGTGGTGGAGACTTGTACTTATAAGGATGCTTGGGTGGTGA
1 ---TGGTGGTGGTGGTGGAGACTTGTACTTATAAGGATGCTTGGGTGGTGA
53144 TGGTGGTGGTGGTGG
1 TGGTGGTGGTGGTGG
53159 TGGGGACATA
Statistics
Matches: 108, Mismatches: 3, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
48 60 0.56
51 48 0.44
ACGTcount: A:0.15, C:0.06, G:0.47, T:0.33
Consensus pattern (48 bp):
TGGTGGTGGTGGTGGAGACTTGTACTTATAAGGATGCTTGGGTGGTGA
Found at i:53206 original size:99 final size:99
Alignment explanation
Indices: 52996--53225 Score: 263
Period size: 99 Copynumber: 2.3 Consensus size: 99
52986 TTGTAAACTG
* * *
52996 GTGGTGGCGGGGGTGGAGACTTGTACTTATAAGGATGTTTGGGTGGTGATGGTGGTGGTGGTGGA
1 GTGGTGGAGGTGGTGGAGACTTGTACTTATAAGGATGCTTGGGTGGTGATGGTGGTGGTGGTGGA
* * * * *
53061 GACTTGTACTTATAAGGATGCTTGGGTGGTGATG
66 GACATATACTTATAAGGATGCGTGGGTAGTGATA
*
53095 GTGGTGGTGGTGGTGGAGACTTGTACTTATAAGGATGCTTGGGTGGTGATGGTGGTGGTGGTGGT
1 GTGGTGGAGGTGGTGGAGACTTGTACTTATAAGGATGCTTGGGTGGTGA---TGGTGGTGGTGGT
* *
53160 GGGGACATATACTTGTAAGG-TG-GT-GG-AG-GATA
63 GGAGACATATACTTATAAGGATGCGTGGGTAGTGATA
* *
53192 GTGCATTGGAGGTGGTGGAGACTTATACTTATAA
1 GTG--GTGGAGGTGGTGGAGACTTGTACTTATAA
53226 ACCTGAGGTG
Statistics
Matches: 113, Mismatches: 13, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
97 6 0.05
98 1 0.01
99 74 0.65
100 1 0.01
101 2 0.02
102 29 0.26
ACGTcount: A:0.18, C:0.06, G:0.44, T:0.32
Consensus pattern (99 bp):
GTGGTGGAGGTGGTGGAGACTTGTACTTATAAGGATGCTTGGGTGGTGATGGTGGTGGTGGTGGA
GACATATACTTATAAGGATGCGTGGGTAGTGATA
Found at i:53236 original size:129 final size:125
Alignment explanation
Indices: 53098--53564 Score: 664
Period size: 129 Copynumber: 3.6 Consensus size: 125
53088 GGTGATGGTG
* * * *
53098 GTGGTGGTGGTGGAGACTTGTACTTATAAGGATGCTTGGGTGGTGATGGTGGTGGTGGTGGTGGG
1 GTGGTGGTGGTGGAGATTTGTACTTGTAAGGATG-TT---TGG-G-TGGCGATGGTGGTGGTGGG
* * *
53163 GACATATACTTGTAAGGTGGTGGAGGATAGTGCATTGGAGGTGGTGGAGACTTATACTTATAAAC
60 GACTTATACTTGTAAGGTGGTGGAGGATAGTGCACTGGAGGTGGTGGAGACTTATACTTGTAAAC
53228 C
125 C
*
53229 TGAGGTGGTGGTGGTGGAGATTTGTACTTGTAATGATGTTTGGGTGGCGATGGTGGTGGTGGGGA
1 ----GTGGTGGTGGTGGAGATTTGTACTTGTAAGGATGTTTGGGTGGCGATGGTGGTGGTGGGGA
53294 CTTATACTTGTAAGGTGGTGGAGGATAGTGCACTGGAGGTGGTGGAGACTTATACTTGTAAACC
62 CTTATACTTGTAAGGTGGTGGAGGATAGTGCACTGGAGGTGGTGGAGACTTATACTTGTAAACC
*
53358 GGAGGTGGTGGTGGTGGAGATTTGTACTTGTAAGGATATTTGGGTGGCGATGGTGGTGGTGGGGA
1 ----GTGGTGGTGGTGGAGATTTGTACTTGTAAGGATGTTTGGGTGGCGATGGTGGTGGTGGGGA
53423 CTTATACTTGTAAGGTGGTGGAGGATAGTGCACTGGAGGTGGTGGAGACTTATACTTGTAAACC
62 CTTATACTTGTAAGGTGGTGGAGGATAGTGCACTGGAGGTGGTGGAGACTTATACTTGTAAACC
* *
53487 GGAGGTGGTGGTGGTGGAGATTTGTACTTGTAAGGATGTTTCGGTGGCGATGGTGGTGGTGGTGA
1 ----GTGGTGGTGGTGGAGATTTGTACTTGTAAGGATGTTTGGGTGGCGATGGTGGTGGTGGGGA
*
53552 CTTGTACTTGTAA
62 CTTATACTTGTAA
53565 ACTGGAGTTA
Statistics
Matches: 317, Mismatches: 15, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
129 280 0.88
130 1 0.00
131 3 0.01
134 2 0.01
135 31 0.10
ACGTcount: A:0.19, C:0.07, G:0.42, T:0.31
Consensus pattern (125 bp):
GTGGTGGTGGTGGAGATTTGTACTTGTAAGGATGTTTGGGTGGCGATGGTGGTGGTGGGGACTTA
TACTTGTAAGGTGGTGGAGGATAGTGCACTGGAGGTGGTGGAGACTTATACTTGTAAACC
Found at i:53247 original size:234 final size:234
Alignment explanation
Indices: 52869--53290 Score: 621
Period size: 234 Copynumber: 1.8 Consensus size: 234
52859 GTGTACTGGC
* * *
52869 GGTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGAGGGGTTGGTGAAGGAGGTGGTGGGGACTT
1 GGTGGTGGAGACTTGTACTTATAAGGATGCTTGGGAGGGGATGGTGAAGGAGGTGGTGGGGACAT
* * * * *
52934 GTACTTATAAGGGGGTGGAGGATAGTGCACCGTATGTGGTGGAGACTTATACTTGTAAACTGGTG
66 ATACTTATAAGGGGGTGGAGGATAGTGCACCGGAGGTGGTGGAGACTTATACTTATAAACTGGAG
*
52999 GTGGCGGGGGTGGAGACTTGTACTTATAAGGATGTTTGGGTGGTGATGGTGGTGGTGGTGGAGAC
131 GTGGCGGGGGTGGAGACTTGTACTTATAAGGATGTTTGGGTGGCGATGGTGGTGGTGGTGGAGAC
53064 TTGTACTTATAAGGATGCTTGGGTGGTGATGGTGGTGGT
196 TTGTACTTATAAGGATGCTTGGGTGGTGATGGTGGTGGT
* * ** *
53103 GGTGGTGGAGACTTGTACTTATAAGGATGCTTGGGTGGTGATGGTGGTGGTGGTGGTGGGGACAT
1 GGTGGTGGAGACTTGTACTTATAAGGATGCTTGGGAGGGGATGGTGAAGGAGGTGGTGGGGACAT
* * **
53168 ATACTTGTAAGGTGGTGGAGGATAGTGCATTGGAGGTGGTGGAGACTTATACTTATAAACCT-GA
66 ATACTTATAAGGGGGTGGAGGATAGTGCACCGGAGGTGGTGGAGACTTATACTTATAAA-CTGGA
* * * * *
53232 GGTGGTGGTGGTGGAGATTTGTACTTGTAATGATGTTTGGGTGGCGATGGTGGTGGTGG
130 GGTGGCGGGGGTGGAGACTTGTACTTATAAGGATGTTTGGGTGGCGATGGTGGTGGTGG
53291 GGACTTATAC
Statistics
Matches: 164, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
234 162 0.99
235 2 0.01
ACGTcount: A:0.18, C:0.07, G:0.44, T:0.31
Consensus pattern (234 bp):
GGTGGTGGAGACTTGTACTTATAAGGATGCTTGGGAGGGGATGGTGAAGGAGGTGGTGGGGACAT
ATACTTATAAGGGGGTGGAGGATAGTGCACCGGAGGTGGTGGAGACTTATACTTATAAACTGGAG
GTGGCGGGGGTGGAGACTTGTACTTATAAGGATGTTTGGGTGGCGATGGTGGTGGTGGTGGAGAC
TTGTACTTATAAGGATGCTTGGGTGGTGATGGTGGTGGT
Found at i:53283 original size:45 final size:44
Alignment explanation
Indices: 53234--53564 Score: 185
Period size: 45 Copynumber: 7.6 Consensus size: 44
53224 AAACCTGAGG
* *
53234 TGGTGGTGGTGGAGATTTGTACTTGTAATGATGTTTGGGTGGCGA
1 TGGTGGTGGTGGAGACTTATACTTGTAA-GATGTTTGGGTGGCGA
* * * *
53279 TGGTGGTGGTGGGGACTTATACTTGTAAGGTGGTGGAGGATAGTGC-A
1 TGGTGGTGGTGGAGACTTATACTTGTAAGATGTTTG-GG-T-G-GCGA
* ** *
53326 CTGGAGGTGGTGGAGACTTATACTTGTAA-A----CCGG-AG-G-
1 -TGGTGGTGGTGGAGACTTATACTTGTAAGATGTTTGGGTGGCGA
* * *
53363 TGGTGGTGGTGGAGATTTGTACTTGTAAGGATATTTGGGTGGCGA
1 TGGTGGTGGTGGAGACTTATACTTGTAA-GATGTTTGGGTGGCGA
* * * *
53408 TGGTGGTGGTGGGGACTTATACTTGTAAGGTGGTGGAGGATAGTGC-A
1 TGGTGGTGGTGGAGACTTATACTTGTAAGATGTTTG-GG-T-G-GCGA
* ** *
53455 CTGGAGGTGGTGGAGACTTATACTTGTAA-A----CCGG-AG-G-
1 -TGGTGGTGGTGGAGACTTATACTTGTAAGATGTTTGGGTGGCGA
* * *
53492 TGGTGGTGGTGGAGATTTGTACTTGTAAGGATGTTTCGGTGGCGA
1 TGGTGGTGGTGGAGACTTATACTTGTAA-GATGTTTGGGTGGCGA
* *
53537 TGGTGGTGGTGGTGACTTGTACTTGTAA
1 TGGTGGTGGTGGAGACTTATACTTGTAA
53565 ACTGGAGTTA
Statistics
Matches: 218, Mismatches: 38, Indels: 60
0.69 0.12 0.19
Matches are distributed among these distances:
36 50 0.23
38 4 0.02
42 9 0.04
43 2 0.01
44 11 0.05
45 80 0.37
46 2 0.01
47 4 0.02
48 56 0.26
ACGTcount: A:0.19, C:0.08, G:0.42, T:0.32
Consensus pattern (44 bp):
TGGTGGTGGTGGAGACTTATACTTGTAAGATGTTTGGGTGGCGA
Found at i:53337 original size:234 final size:234
Alignment explanation
Indices: 52869--53338 Score: 599
Period size: 234 Copynumber: 2.0 Consensus size: 234
52859 GTGTACTGGC
* * *
52869 GGTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGAGGGGTTGGTGAAGGAGGTGGTGGGGACTT
1 GGTGGTGGAGACTTGTACTTATAAGGATGCTTGGGAGGGGATGGTGAAGGAGGTGGTGGGGACAT
* * * * *
52934 GTACTTATAAGGGGGTGGAGGATAGTGCACCGTATGTGGTGGAGACTTATACTTGTAAACTGGTG
66 ATACTTATAAGGGGGTGGAGGATAGTGCACCGGAGGTGGTGGAGACTTATACTTATAAACTGGAG
*
52999 GTGGCGGGGGTGGAGACTTGTACTTATAAGGATGTTTGGGTGGTGATGGTGGTGGTGGTGGAGAC
131 GTGGCGGGGGTGGAGACTTGTACTTATAAGGATGTTTGGGTGGCGATGGTGGTGGTGGTGGAGAC
* * * *
53064 TTGTACTTATAAGGATGCTTGGGTGGTGATGGTGGTGGT
196 TTATACTTATAAGGATGCTGGGGTAGTGATGGAGGTGGT
* * ** *
53103 GGTGGTGGAGACTTGTACTTATAAGGATGCTTGGGTGGTGATGGTGGTGGTGGTGGTGGGGACAT
1 GGTGGTGGAGACTTGTACTTATAAGGATGCTTGGGAGGGGATGGTGAAGGAGGTGGTGGGGACAT
* * **
53168 ATACTTGTAAGGTGGTGGAGGATAGTGCATTGGAGGTGGTGGAGACTTATACTTATAAACCT-GA
66 ATACTTATAAGGGGGTGGAGGATAGTGCACCGGAGGTGGTGGAGACTTATACTTATAAA-CTGGA
* * * * *
53232 GGTGGTGGTGGTGGAGATTTGTACTTGTAATGATGTTTGGGTGGCGATGGTGGTGGT-G-GG-GA
130 GGTGGCGGGGGTGGAGACTTGTACTTATAAGGATGTTTGGGTGGCGATGGTGGTGGTGGTGGAGA
* *
53294 CTTATACTTGTAAGG-TGGTGGAGGATAGTGCACTGGAGGTGGT
195 CTTATACTTATAAGGATGCTGG-GG-TAGTG-A-TGGAGGTGGT
53337 GG
1 GG
53339 AGACTTATAC
Statistics
Matches: 202, Mismatches: 29, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
230 4 0.02
231 17 0.08
232 6 0.03
233 2 0.01
234 171 0.85
235 2 0.01
ACGTcount: A:0.19, C:0.07, G:0.44, T:0.31
Consensus pattern (234 bp):
GGTGGTGGAGACTTGTACTTATAAGGATGCTTGGGAGGGGATGGTGAAGGAGGTGGTGGGGACAT
ATACTTATAAGGGGGTGGAGGATAGTGCACCGGAGGTGGTGGAGACTTATACTTATAAACTGGAG
GTGGCGGGGGTGGAGACTTGTACTTATAAGGATGTTTGGGTGGCGATGGTGGTGGTGGTGGAGAC
TTATACTTATAAGGATGCTGGGGTAGTGATGGAGGTGGT
Found at i:55266 original size:18 final size:17
Alignment explanation
Indices: 55232--55265 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
55222 TATTCTCTAA
55232 AAATTTTAAGTTTTTTT
1 AAATTTTAAGTTTTTTT
55249 AAATTTTAAGTTTTTTT
1 AAATTTTAAGTTTTTTT
55266 TTGTATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (17 bp):
AAATTTTAAGTTTTTTT
Found at i:55855 original size:41 final size:41
Alignment explanation
Indices: 55745--55855 Score: 103
Period size: 37 Copynumber: 2.8 Consensus size: 41
55735 AATATCTAAA
* *
55745 AATAAAAAATTAATTATACATGTTATTGGATC-AATAATTT
1 AATAAAAAATTAATTATACATGTTATTGGATCAAAGAAATT
* *
55785 AAAAATAAACACTTAAGTA-A-A--TTA-T--ATCAAAGAAATT
1 AATAA-AAA-A-TTAATTATACATGTTATTGGATCAAAGAAATT
55822 AATAAAAAATTAATTATACATGTTATTGGATCAA
1 AATAAAAAATTAATTATACATGTTATTGGATCAA
55856 TATTTTTCTG
Statistics
Matches: 54, Mismatches: 6, Indels: 21
0.67 0.07 0.26
Matches are distributed among these distances:
34 6 0.11
35 2 0.04
36 7 0.13
37 10 0.19
38 4 0.07
39 4 0.07
40 4 0.07
41 9 0.17
42 2 0.04
43 6 0.11
ACGTcount: A:0.52, C:0.06, G:0.07, T:0.34
Consensus pattern (41 bp):
AATAAAAAATTAATTATACATGTTATTGGATCAAAGAAATT
Found at i:62243 original size:20 final size:20
Alignment explanation
Indices: 62149--62516 Score: 449
Period size: 20 Copynumber: 18.4 Consensus size: 20
62139 GATTTTCCAT
* ** *
62149 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGTATCCGTA
* *
62169 AATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATC-CGTA
62189 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
62209 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
**
62229 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGTATCCGTA
*
62249 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
62269 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
62289 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* *
62309 AACCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
62329 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
62349 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
62369 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
62389 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
62409 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
62429 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
62449 AATCGCAACGAGAATCTGT-
1 AATCGCAACGCGTATCCGTA
*
62468 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
62488 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
62508 AATCACAAC
1 AATCGCAAC
62517 ACTGAAATTT
Statistics
Matches: 303, Mismatches: 36, Indels: 18
0.85 0.10 0.05
Matches are distributed among these distances:
19 18 0.06
20 282 0.93
21 3 0.01
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGTATCCGTA
Found at i:63226 original size:24 final size:24
Alignment explanation
Indices: 63187--63233 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
63177 AAATTTGGTC
63187 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
63211 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
63234 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:63425 original size:12 final size:12
Alignment explanation
Indices: 63408--63432 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
63398 ATATAATCCT
63408 GAAGAAGAAAAA
1 GAAGAAGAAAAA
63420 GAAGAAGAAAAA
1 GAAGAAGAAAAA
63432 G
1 G
63433 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:65352 original size:14 final size:14
Alignment explanation
Indices: 65333--65389 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
65323 GCGAAATGAA
*
65333 AATCGCAACGACAG
1 AATCGCAACGAAAG
65347 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
65364 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
65380 AATCGCAACG
1 AATCGCAACG
65390 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:65360 original size:33 final size:33
Alignment explanation
Indices: 65314--65406 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
65304 GCGAAACCAA
*
65314 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
65347 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
65380 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
65407 TGCGATTTTG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.47, C:0.22, G:0.20, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:65371 original size:19 final size:19
Alignment explanation
Indices: 65294--65411 Score: 121
Period size: 19 Copynumber: 6.7 Consensus size: 19
65284 CTGGCCGACC
**
65294 AAATCGCAACGCGAAACCA
1 AAATCGCAACGCGAAATGA
65313 AAATCGCAACGCGAAATGA
1 AAATCGCAACGCGAAATGA
*
65332 AAATCGCAA--CGACA-G-
1 AAATCGCAACGCGAAATGA
*
65347 -AATCGCAATGCGAAATGA
1 AAATCGCAACGCGAAATGA
65365 AAATCGCAA--CGAAA-G-
1 AAATCGCAACGCGAAATGA
65380 -AATCGCAACGCGAAATGA
1 AAATCGCAACGCGAAATGA
*
65398 AAATCGCAATGCGA
1 AAATCGCAACGCGA
65412 TTTTGGTTTC
Statistics
Matches: 84, Mismatches: 5, Indels: 20
0.77 0.05 0.18
Matches are distributed among these distances:
14 16 0.19
16 11 0.13
17 11 0.13
19 46 0.55
ACGTcount: A:0.47, C:0.23, G:0.20, T:0.10
Consensus pattern (19 bp):
AAATCGCAACGCGAAATGA
Found at i:65429 original size:19 final size:19
Alignment explanation
Indices: 65407--65535 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
65397 AAAATCGCAA
65407 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
65426 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
65440 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
65459 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
65473 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
65492 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
65511 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
65531 TGCGA
1 TGCGA
65536 AAGTAAACTA
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 22 0.24
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 48 0.53
20 13 0.14
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:65449 original size:33 final size:33
Alignment explanation
Indices: 65407--65498 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
65397 AAAATCGCAA
65407 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
65440 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
65473 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
65499 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 54 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.18, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:65738 original size:93 final size:93
Alignment explanation
Indices: 65579--65955 Score: 717
Period size: 93 Copynumber: 4.1 Consensus size: 93
65569 TTGAATGGAT
*
65579 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATAATATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
65644 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
65672 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
65737 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
65765 AAATTTACTTTCAACCAAAAGAC-AAACAAAGAC-AA-A-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
65826 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
65854 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
65919 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
65947 AAATTTACT
1 AAATTTACT
65956 AAGCAATCTA
Statistics
Matches: 279, Mismatches: 1, Indels: 8
0.97 0.00 0.03
Matches are distributed among these distances:
89 76 0.27
90 11 0.04
91 4 0.01
92 11 0.04
93 177 0.63
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (93 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:65890 original size:182 final size:185
Alignment explanation
Indices: 65579--65955 Score: 724
Period size: 182 Copynumber: 2.0 Consensus size: 185
65569 TTGAATGGAT
65579 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATAATATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGAC-AATAATATTTCACAGTGTTAAAGAATACAC
65644 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
65 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
65709 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
130 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
65765 AAATTTACTTTCAACCAAAAGAC-AAACAAAGAC-A-AATATTTCACAGTGTTAAAGAATACACA
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAATAATATTTCACAGTGTTAAAGAATACACA
65827 GTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAAT
66 GTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAAT
65892 ACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
131 ACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
65947 AAATTTACT
1 AAATTTACT
65956 AAGCAATCTA
Statistics
Matches: 191, Mismatches: 0, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
182 157 0.82
183 1 0.01
185 10 0.05
186 23 0.12
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (185 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAATAATATTTCACAGTGTTAAAGAATACACA
GTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAAT
ACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:67676 original size:14 final size:14
Alignment explanation
Indices: 67657--67746 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
67647 TTGAAATGAA
67657 AATCGCAACGAGAG
1 AATCGCAACGAGAG
67671 AATCGCAACGCGAGATG
1 AATCGCAA--CGAGA-G
67688 ACAATCGCAACGAGAG
1 --AATCGCAACGAGAG
*
67704 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
67723 AATCGCAACGAGAG
1 AATCGCAACGAGAG
67737 AATCGCAACG
1 AATCGCAACG
67747 CGAAATGAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.42, C:0.23, G:0.26, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:67694 original size:33 final size:33
Alignment explanation
Indices: 67649--67763 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
67639 TCTTTTGGTT
67649 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
67682 GAGATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
67715 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
67748 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
67764 TGCGATTTTG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.45, C:0.21, G:0.24, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:67695 original size:19 final size:18
Alignment explanation
Indices: 67656--67768 Score: 88
Period size: 19 Copynumber: 6.8 Consensus size: 18
67646 GTTGAAATGA
67656 AAATCGCAA--CGAGA-G
1 AAATCGCAACGCGAGATG
67671 -AATCGCAACGCGAGATG
1 AAATCGCAACGCGAGATG
67688 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
67704 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
67721 AAAATCGCAA--CGAGA-G
1 -AAATCGCAACGCGAGATG
*
67737 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
*
67754 AAAATCGCAATGCGA
1 -AAATCGCAACGCGA
67769 TTTTGGTTTC
Statistics
Matches: 79, Mismatches: 4, Indels: 26
0.72 0.04 0.24
Matches are distributed among these distances:
14 24 0.30
16 15 0.19
17 12 0.15
19 28 0.35
ACGTcount: A:0.43, C:0.22, G:0.25, T:0.10
Consensus pattern (18 bp):
AAATCGCAACGCGAGATG
Found at i:67799 original size:14 final size:14
Alignment explanation
Indices: 67780--67834 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
67770 TTTGGTTTCG
67780 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
67794 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
67813 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
67827 CGTTGCGA
1 CGTTGCGA
67835 CAGTCATTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
16 3 0.09
17 3 0.09
19 10 0.29
ACGTcount: A:0.09, C:0.25, G:0.24, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:67812 original size:33 final size:33
Alignment explanation
Indices: 67764--67834 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
67754 AAAATCGCAA
**
67764 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
67797 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
67830 TGCGA
1 TGCGA
67835 CAGTCATTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.08, C:0.23, G:0.25, T:0.44
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:67842 original size:33 final size:33
Alignment explanation
Indices: 67775--67856 Score: 119
Period size: 33 Copynumber: 2.5 Consensus size: 33
67765 GCGATTTTGG
***
67775 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
67808 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
*
67841 TTCTCTCGTTGCGATT
1 TT-TCGCGTTGCGATT
67857 TTCATTTATC
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
33 32 0.73
34 12 0.27
ACGTcount: A:0.10, C:0.26, G:0.22, T:0.43
Consensus pattern (33 bp):
TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
Found at i:67861 original size:20 final size:20
Alignment explanation
Indices: 67787--67875 Score: 75
Period size: 20 Copynumber: 4.8 Consensus size: 20
67777 TCGCGTTGCG
67787 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
67807 ATT-TCGCGTTGCG------
1 ATTCTCTCGTTGCGATTTTC
***
67820 ATTCTCTCGTTGCGACAGTC
1 ATTCTCTCGTTGCGATTTTC
67840 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
67860 ATTTATCTCGTTGCGA
1 A-TTCTCTCGTTGCGA
67876 CTCTTCTGCA
Statistics
Matches: 55, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
13 3 0.05
14 9 0.16
19 9 0.16
20 21 0.38
21 13 0.24
ACGTcount: A:0.12, C:0.25, G:0.19, T:0.44
Consensus pattern (20 bp):
ATTCTCTCGTTGCGATTTTC
Found at i:67997 original size:33 final size:32
Alignment explanation
Indices: 67955--68024 Score: 104
Period size: 33 Copynumber: 2.2 Consensus size: 32
67945 AATACTAACT
*
67955 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCG-AA
* *
67988 TGAAAATCGCAACGACAGAATCGTAACGCGAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAA
68020 TGAAA
1 TGAAA
68025 TCTAAGTGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 7 0.21
33 27 0.79
ACGTcount: A:0.47, C:0.19, G:0.23, T:0.11
Consensus pattern (32 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAA
Found at i:68428 original size:20 final size:20
Alignment explanation
Indices: 68403--68596 Score: 221
Period size: 20 Copynumber: 9.7 Consensus size: 20
68393 CTTTAAATAT
68403 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
68423 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
68445 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
68464 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
68484 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
68504 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
68524 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
68544 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
68564 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
68584 CGCGTTGCGATTT
1 CGCGTTGCGATTT
68597 TGGAAAATCG
Statistics
Matches: 147, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
19 2 0.01
20 128 0.87
21 15 0.10
22 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:68590 original size:60 final size:60
Alignment explanation
Indices: 68403--68596 Score: 253
Period size: 60 Copynumber: 3.2 Consensus size: 60
68393 CTTTAAATAT
**
68403 CGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATA
* * *** *
68464 CGCGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
* * * ** *
68524 CACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
68584 CGCGTTGCGATTT
1 CGCGTTGCGATTT
68597 TGGAAAATCG
Statistics
Matches: 112, Mismatches: 21, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
60 84 0.75
61 28 0.25
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
Found at i:68613 original size:21 final size:20
Alignment explanation
Indices: 68589--68665 Score: 57
Period size: 21 Copynumber: 3.7 Consensus size: 20
68579 ATATTCGCGT
68589 TGCGATTTTGGAAAATCGCAA
1 TGCGATTTTGGAAAATCGC-A
* * **
68610 TGCGAATTTGTACTATCGCA
1 TGCGATTTTGGAAAATCGCA
* *
68630 TCGCGATTTT-CAAGAATCGCGT
1 T-GCGATTTTGGAA-AATCGC-A
68652 TGCGATTTTGGAAA
1 TGCGATTTTGGAAA
68666 CTGATTTGCG
Statistics
Matches: 42, Mismatches: 10, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
20 3 0.07
21 36 0.86
22 3 0.07
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.32
Consensus pattern (20 bp):
TGCGATTTTGGAAAATCGCA
Found at i:68676 original size:20 final size:20
Alignment explanation
Indices: 68651--68702 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
68641 AAGAATCGCG
*
68651 TTGCGATTTTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
68671 TTGCGATTCTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
68691 TTGCGATTCTGG
1 TTGCGATTCTGG
68703 GGATCGCGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.21, C:0.13, G:0.27, T:0.38
Consensus pattern (20 bp):
TTGCGATTCTGGAAACTGAT
Found at i:72881 original size:23 final size:23
Alignment explanation
Indices: 72855--72908 Score: 108
Period size: 23 Copynumber: 2.3 Consensus size: 23
72845 CGAGTGTGAG
72855 TGGAGTGAAATCTGAATTTTCTT
1 TGGAGTGAAATCTGAATTTTCTT
72878 TGGAGTGAAATCTGAATTTTCTT
1 TGGAGTGAAATCTGAATTTTCTT
72901 TGGAGTGA
1 TGGAGTGA
72909 CCAAGTGAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.26, C:0.07, G:0.26, T:0.41
Consensus pattern (23 bp):
TGGAGTGAAATCTGAATTTTCTT
Found at i:79572 original size:24 final size:24
Alignment explanation
Indices: 79538--79603 Score: 105
Period size: 24 Copynumber: 2.8 Consensus size: 24
79528 TTACAAAAGT
79538 TTGTGCTTTTGCAGCAGATGAAAC
1 TTGTGCTTTTGCAGCAGATGAAAC
* * *
79562 TTGTGCATTTGCAACAGATGAAGC
1 TTGTGCTTTTGCAGCAGATGAAAC
79586 TTGTGCTTTTGCAGCAGA
1 TTGTGCTTTTGCAGCAGA
79604 CGAGTCTCCT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (24 bp):
TTGTGCTTTTGCAGCAGATGAAAC
Found at i:83331 original size:17 final size:15
Alignment explanation
Indices: 83300--83335 Score: 54
Period size: 17 Copynumber: 2.3 Consensus size: 15
83290 AAATGAAAAA
83300 TAAATAAAAAAATAT
1 TAAATAAAAAAATAT
83315 TAAATTAAAAGAAATAT
1 TAAA-TAAAA-AAATAT
83332 TAAA
1 TAAA
83336 GATGGATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 4 0.21
16 5 0.26
17 10 0.53
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (15 bp):
TAAATAAAAAAATAT
Found at i:84598 original size:24 final size:23
Alignment explanation
Indices: 84566--84664 Score: 91
Period size: 24 Copynumber: 4.4 Consensus size: 23
84556 AAATCATACA
84566 ATATGTTTTTAAAATATATATTAC
1 ATATGTTTTTAAAA-ATATATTAC
*
84590 ATATGTTTTT-CAAA-A-ATT--
1 ATATGTTTTTAAAAATATATTAC
* *
84608 ATATGTTTTTAAAATTATATAAC
1 ATATGTTTTTAAAAATATATTAC
*
84631 AATATGTTTTTAAAAACTATATTAT
1 -ATATGTTTTTAAAAA-TATATTAC
*
84656 ACATGTTTT
1 ATATGTTTT
84665 CCAAAAACCA
Statistics
Matches: 60, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
18 10 0.17
19 2 0.03
20 4 0.07
21 3 0.05
22 1 0.02
23 2 0.03
24 32 0.53
25 6 0.10
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.49
Consensus pattern (23 bp):
ATATGTTTTTAAAAATATATTAC
Found at i:84615 original size:42 final size:41
Alignment explanation
Indices: 84566--84652 Score: 131
Period size: 42 Copynumber: 2.1 Consensus size: 41
84556 AAATCATACA
* *
84566 ATATGTTTTTAAAATATATATTAC-ATATGTTTTTCAAAAATT
1 ATATGTTTTTAAAAT-TATATAACAATATGTTTTT-AAAAACT
84608 ATATGTTTTTAAAATTATATAACAATATGTTTTTAAAAACT
1 ATATGTTTTTAAAATTATATAACAATATGTTTTTAAAAACT
84649 ATAT
1 ATAT
84653 TATACATGTT
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
41 17 0.40
42 25 0.60
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.48
Consensus pattern (41 bp):
ATATGTTTTTAAAATTATATAACAATATGTTTTTAAAAACT
Found at i:84623 original size:16 final size:17
Alignment explanation
Indices: 84590--84627 Score: 60
Period size: 16 Copynumber: 2.2 Consensus size: 17
84580 TATATATTAC
84590 ATATGTTTTTCAAAAATT
1 ATATGTTTTT-AAAAATT
84608 ATATGTTTTT-AAAATT
1 ATATGTTTTTAAAAATT
84624 ATAT
1 ATAT
84628 AACAATATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 10 0.50
18 10 0.50
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.53
Consensus pattern (17 bp):
ATATGTTTTTAAAAATT
Found at i:84628 original size:18 final size:19
Alignment explanation
Indices: 84585--84628 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
84575 TAAAATATAT
*
84585 ATTACATATGTTTTTCAAA
1 ATTATATATGTTTTTCAAA
*
84604 AAT-TATATGTTTTT-AAA
1 ATTATATATGTTTTTCAAA
84621 ATTATATA
1 ATTATATA
84629 ACAATATGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
17 5 0.24
18 14 0.67
19 2 0.10
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.50
Consensus pattern (19 bp):
ATTATATATGTTTTTCAAA
Found at i:84683 original size:66 final size:66
Alignment explanation
Indices: 84563--84687 Score: 171
Period size: 66 Copynumber: 1.9 Consensus size: 66
84553 TTAAAATCAT
* * **
84563 ACAATATGTTTTTAAAATATATATTACATATGTTTTTCAAAAATTATATGTTTTTAAAATTATAT
1 ACAATATGTTTTTAAAATATATATTACACATGTTTTCCAAAAACCATATGTTTTTAAAATTATAT
84628 A
66 A
* * *
84629 ACAATATGTTTTTAAAA-ACTATATTATACATGTTTTCCAAAAACCATTTTTTTTTAAAA
1 ACAATATGTTTTTAAAATA-TATATTACACATGTTTTCCAAAAACCATATGTTTTTAAAA
84688 AAAACTATAT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
65 1 0.02
66 50 0.98
ACGTcount: A:0.42, C:0.08, G:0.04, T:0.46
Consensus pattern (66 bp):
ACAATATGTTTTTAAAATATATATTACACATGTTTTCCAAAAACCATATGTTTTTAAAATTATAT
A
Found at i:84757 original size:14 final size:14
Alignment explanation
Indices: 84738--84764 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
84728 ACTATAAATT
84738 ATATGTTTTCAAAA
1 ATATGTTTTCAAAA
84752 ATATGTTTTCAAA
1 ATATGTTTTCAAA
84765 GACTTTATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.44
Consensus pattern (14 bp):
ATATGTTTTCAAAA
Found at i:84760 original size:38 final size:37
Alignment explanation
Indices: 84686--84858 Score: 142
Period size: 38 Copynumber: 4.7 Consensus size: 37
84676 TTTTTTTTAA
* ***
84686 AAAAAACTATATATTATATATTTTCAAAAACCGTTTT
1 AAAAAACTATAAATTATATATTTTCAAAATTTGTTTT
* *
84723 AAAAAACTATAAATTATATGTTTTCAAAAATATGTTTT
1 AAAAAACTATAAATTATATATTTTC-AAAATTTGTTTT
* * * *
84761 CAAAGACT-T-TATTATATATATATTC--AATTTTTTTT
1 AAAAAACTATAAATTATATAT-T-TTCAAAATTTGTTTT
*
84796 AATAAAACTATAAATTATATGTTTTCAAAATTTAGTTTT
1 AA-AAAACTATAAATTATATATTTTCAAAATTT-GTTTT
* *
84835 CAAAAACTAT--ACTATATATTTTCA
1 AAAAAACTATAAATTATATATTTTCA
84859 CAAACTGTAT
Statistics
Matches: 108, Mismatches: 19, Indels: 19
0.74 0.13 0.13
Matches are distributed among these distances:
35 9 0.08
36 28 0.26
37 27 0.25
38 39 0.36
39 5 0.05
ACGTcount: A:0.43, C:0.09, G:0.03, T:0.45
Consensus pattern (37 bp):
AAAAAACTATAAATTATATATTTTCAAAATTTGTTTT
Found at i:84863 original size:22 final size:24
Alignment explanation
Indices: 84831--84882 Score: 63
Period size: 22 Copynumber: 2.2 Consensus size: 24
84821 CAAAATTTAG
84831 TTTTCAAAAAC-TATAC-TATATA
1 TTTTCAAAAACGTATACATATATA
*
84853 TTTTCACAAACTGTATACATTATATA
1 TTTTCAAAAAC-GTATACA-TATATA
84879 TTTT
1 TTTT
84883 TGAAAATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
22 10 0.40
24 5 0.20
26 10 0.40
ACGTcount: A:0.38, C:0.13, G:0.02, T:0.46
Consensus pattern (24 bp):
TTTTCAAAAACGTATACATATATA
Found at i:88381 original size:19 final size:20
Alignment explanation
Indices: 88341--88382 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
88331 AATTATTAAA
*
88341 ATTTATAAAATAGTTTTTTT
1 ATTTATAAAATAGTTATTTT
88361 ATTTATAAAATA-TTATTTT
1 ATTTATAAAATAGTTATTTT
88380 ATT
1 ATT
88383 GAATTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (20 bp):
ATTTATAAAATAGTTATTTT
Found at i:91583 original size:17 final size:18
Alignment explanation
Indices: 91550--91584 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
91540 AGATCTCTTT
*
91550 TTAGTTTTTTTTAATTTC
1 TTAGTTTTTATTAATTTC
91568 TTAGTTTTTATT-ATTTC
1 TTAGTTTTTATTAATTTC
91585 ATATGTCTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.17, C:0.06, G:0.06, T:0.71
Consensus pattern (18 bp):
TTAGTTTTTATTAATTTC
Found at i:92260 original size:36 final size:36
Alignment explanation
Indices: 92218--92293 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
92208 TTATAGCTAA
*
92218 AAAAATCGTCTTTATTCGAATTTTGCCAAAAATAGC
1 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
92254 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
1 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
92290 AAAA
1 AAAA
92294 TCCCGAAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (36 bp):
AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
Found at i:96785 original size:15 final size:15
Alignment explanation
Indices: 96767--96796 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
96757 CCACGGTGCT
96767 CCCGGAATCCTGCGC
1 CCCGGAATCCTGCGC
96782 CCCGGAATCCTGCGC
1 CCCGGAATCCTGCGC
96797 GATTGTGATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.47, G:0.27, T:0.13
Consensus pattern (15 bp):
CCCGGAATCCTGCGC
Found at i:97259 original size:36 final size:36
Alignment explanation
Indices: 97217--97292 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
97207 TTATAGCTAA
*
97217 AAAAATCGTCTTTATTCGAATTTTGCCAAAAATAGC
1 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
97253 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
1 AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
97289 AAAA
1 AAAA
97293 TCCCGAAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (36 bp):
AAAAATCGTATTTATTCGAATTTTGCCAAAAATAGC
Found at i:102178 original size:16 final size:16
Alignment explanation
Indices: 102157--102190 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
102147 ATTCTAACCA
102157 TTGTTTATTTATTTAT
1 TTGTTTATTTATTTAT
* *
102173 TTGTTTGTTTGTTTAT
1 TTGTTTATTTATTTAT
102189 TT
1 TT
102191 ATTATTTCTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.00, G:0.12, T:0.76
Consensus pattern (16 bp):
TTGTTTATTTATTTAT
Found at i:106568 original size:13 final size:13
Alignment explanation
Indices: 106550--106649 Score: 77
Period size: 13 Copynumber: 7.8 Consensus size: 13
106540 ATAAACGAAG
106550 CAAAGAAAAAAAA
1 CAAAGAAAAAAAA
*
106563 CAAAGAAAAAGAA
1 CAAAGAAAAAAAA
* *
106576 CAAAG---AAGAG
1 CAAAGAAAAAAAA
106586 CAAAG--AAAAAA
1 CAAAGAAAAAAAA
*
106597 CAAAGAAAAAAAGTG
1 CAAAGAAAAAAA--A
*
106612 CAAAG-AAAAAAG
1 CAAAGAAAAAAAA
106624 CAAAGAGAAAAGAAA
1 CAAAGA-AAAA-AAA
106639 CAAAGAAAAAA
1 CAAAGAAAAAA
106650 TCAAAGCAAA
Statistics
Matches: 73, Mismatches: 6, Indels: 16
0.77 0.06 0.17
Matches are distributed among these distances:
10 9 0.12
11 8 0.11
12 6 0.08
13 23 0.32
14 14 0.19
15 13 0.18
ACGTcount: A:0.75, C:0.08, G:0.16, T:0.01
Consensus pattern (13 bp):
CAAAGAAAAAAAA
Found at i:106579 original size:26 final size:25
Alignment explanation
Indices: 106550--106665 Score: 96
Period size: 27 Copynumber: 4.5 Consensus size: 25
106540 ATAAACGAAG
106550 CAAAGAAAAAAAACAAAGAAAAAGAA
1 CAAAGAAAAAAAACAAAGAAAAA-AA
* *
106576 CAAAG---AAGAGCAAAG-AAAAAA
1 CAAAGAAAAAAAACAAAGAAAAAAA
* *
106597 CAAAGAAAAAAAGTGCAAAGAAAAAAG
1 CAAAGAAAAAAA--ACAAAGAAAAAAA
*
106624 CAAAGAGAAAAGAAACAAAGAAAAAAT
1 CAAAGA-AAAA-AAACAAAGAAAAAAA
106651 CAAAGCAAAAGAAAA
1 CAAAG-AAAA-AAAA
106666 AACAAAGAGC
Statistics
Matches: 74, Mismatches: 6, Indels: 19
0.75 0.06 0.19
Matches are distributed among these distances:
21 7 0.09
22 4 0.05
23 8 0.11
24 3 0.04
26 11 0.15
27 33 0.45
28 6 0.08
29 2 0.03
ACGTcount: A:0.74, C:0.09, G:0.16, T:0.02
Consensus pattern (25 bp):
CAAAGAAAAAAAACAAAGAAAAAAA
Found at i:106628 original size:27 final size:26
Alignment explanation
Indices: 106570--106663 Score: 102
Period size: 27 Copynumber: 3.5 Consensus size: 26
106560 AAACAAAGAA
106570 AAAGAACAAAGAAGAGCAAAGAAAAAAC
1 AAAGAA-AAAGAAG-GCAAAGAAAAAAC
106598 AAAGAAAAA-AAGTGCAAAGAAAAAAGC
1 AAAGAAAAAGAAG-GCAAAGAAAAAA-C
*
106625 AAAGAGAAAAGAA-ACAAAGAAAAAATC
1 AAAGA-AAAAGAAGGCAAAGAAAAAA-C
*
106652 AAAGCAAAAGAA
1 AAAGAAAAAGAA
106664 AAAACAAAGA
Statistics
Matches: 59, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
26 22 0.37
27 25 0.42
28 10 0.17
29 2 0.03
ACGTcount: A:0.72, C:0.09, G:0.17, T:0.02
Consensus pattern (26 bp):
AAAGAAAAAGAAGGCAAAGAAAAAAC
Found at i:106685 original size:18 final size:19
Alignment explanation
Indices: 106640--106694 Score: 62
Period size: 18 Copynumber: 3.0 Consensus size: 19
106630 GAAAAGAAAC
106640 AAAGAAAAAATC-AA-AGCA
1 AAAGAAAAAA-CAAAGAGCA
106658 AAAGAAAAAACAAAGAGCA
1 AAAGAAAAAACAAAGAGCA
* *
106677 AAA-AGAAAACAAGGAGCA
1 AAAGAAAAAACAAAGAGCA
106695 TAGACAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
17 1 0.03
18 25 0.76
19 7 0.21
ACGTcount: A:0.71, C:0.11, G:0.16, T:0.02
Consensus pattern (19 bp):
AAAGAAAAAACAAAGAGCA
Found at i:107868 original size:29 final size:27
Alignment explanation
Indices: 107806--107910 Score: 86
Period size: 28 Copynumber: 3.7 Consensus size: 27
107796 TTTGTCTCTC
* * * *
107806 TTGAGACTGTTTCTCTTGAAACATATCT
1 TTGAGTCTG-TTCTTTTGAAAAAAATCT
107834 TTGAGTCTGTTCCTTTTGAATAAAAATCT
1 TTGAGTCTGTT-CTTTTGAA-AAAAATCT
* **
107863 TTGAGT-TGTTTCTTGTGAGAAAAAAAAT
1 TTGAGTCTG-TTCTTTTGA-AAAAAATCT
*
107891 TTGAGTCTATTCTTTTGAAA
1 TTGAGTCTGTTCTTTTGAAA
107911 CAAAGTTTTA
Statistics
Matches: 63, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
27 4 0.06
28 43 0.68
29 16 0.25
ACGTcount: A:0.29, C:0.11, G:0.16, T:0.44
Consensus pattern (27 bp):
TTGAGTCTGTTCTTTTGAAAAAAATCT
Found at i:107988 original size:63 final size:64
Alignment explanation
Indices: 107904--108032 Score: 181
Period size: 63 Copynumber: 2.0 Consensus size: 64
107894 AGTCTATTCT
* *
107904 TTTGAAACAAAGTTTTATCTCTCTTGAGACAATTTC-GTGA-AAAAAATCTTTGAGTATGTTTC
1 TTTGAAACAAAATTTTATCTCTCTTGAGACAATTTCTGTAATAAAAAATCTTTGAGTATGTTTC
* * *
107966 TTTGAAAACAAAATTTTGTCTCTCTTGAGACAATTTCTTTTAATAAAAAATCTTTGAGTTTGTTT
1 TTTG-AAACAAAATTTTATCTCTCTTGAGACAATTTC-TGTAATAAAAAATCTTTGAGTATGTTT
108031 C
64 C
108032 T
1 T
108033 ACTAACAAAA
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
62 4 0.07
63 30 0.52
65 2 0.03
66 22 0.38
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.43
Consensus pattern (64 bp):
TTTGAAACAAAATTTTATCTCTCTTGAGACAATTTCTGTAATAAAAAATCTTTGAGTATGTTTC
Found at i:108117 original size:96 final size:96
Alignment explanation
Indices: 107949--108127 Score: 227
Period size: 96 Copynumber: 1.9 Consensus size: 96
107939 CGTGAAAAAA
* * * * *
107949 ATCTTTGAGTATGTTTCTTTGAAAACAAAATTTTGTCTCTCTTGAGACAATTTCTTTTAATAAAA
1 ATCTTTGAGTATATTTATTTAAAAACAAAATTTTGTCTCTCTTGAGACAATTTCTATGAATAAAA
* *
108014 AATCTTTGAGTTTGTTTCTACTAACAAAATC
66 AACCTTTGAGATTGTTTCTACTAACAAAATC
* * * *
108045 ATCTTTGAGTTTATTTATTTAAAAAC-AATTTTTTTCTCTCTTGAGACAGTTTCTAATGAA-AAA
1 ATCTTTGAGTATATTTATTTAAAAACAAAATTTTGTCTCTCTTGAGACAATTTCT-ATGAATAAA
108108 ACAACCTTTGAGATTGTTTC
65 A-AACCTTTGAGATTGTTTC
108128 CTTTGAAAAA
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
95 29 0.41
96 41 0.59
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.44
Consensus pattern (96 bp):
ATCTTTGAGTATATTTATTTAAAAACAAAATTTTGTCTCTCTTGAGACAATTTCTATGAATAAAA
AACCTTTGAGATTGTTTCTACTAACAAAATC
Found at i:108585 original size:38 final size:37
Alignment explanation
Indices: 108493--108629 Score: 172
Period size: 37 Copynumber: 3.7 Consensus size: 37
108483 TTGAAACATT
108493 TATCTTTGAGTCTGTTTCACTTGAAACAAAACAAAGAA
1 TATCTTTGAGTCTGTTTCACTTGAAACAAAACAAA-AA
*
108531 -ATCTTTGAGTCTGTTTCACTTGCAACAAAACAAAAA
1 TATCTTTGAGTCTGTTTCACTTGAAACAAAACAAAAA
* * *
108567 TCATATTTGAGTTTGTTTCCCTTGAAACAAAAC--AAA
1 T-ATCTTTGAGTCTGTTTCACTTGAAACAAAACAAAAA
* *
108603 TATCTTTGAGATTTGTTTCCCTTGAAA
1 TATCTTTGAG-TCTGTTTCACTTGAAA
108630 TGAATTTTGT
Statistics
Matches: 90, Mismatches: 6, Indels: 8
0.87 0.06 0.08
Matches are distributed among these distances:
35 8 0.09
36 22 0.24
37 33 0.37
38 27 0.30
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.36
Consensus pattern (37 bp):
TATCTTTGAGTCTGTTTCACTTGAAACAAAACAAAAA
Found at i:108976 original size:133 final size:133
Alignment explanation
Indices: 108774--109089 Score: 422
Period size: 133 Copynumber: 2.4 Consensus size: 133
108764 ACATAGGAAC
* * * *
108774 CGTGTCATCCCCTGACCAGATCTCTTAATCACGTAGGAGCCATGTCAACCTTAGATAACCAGTCG
1 CGTGTCATCCCC-GACCAGATCTCTTCATCACGTAGGAGCCGTGTCACCCATAGATAACCAGTCG
* * **
108839 TCCTCATCACATAGGAACCGAGTTAT-ACCCTTCCTAAAGATGGCCAGAACTCTTTATCGCGTAT
65 TCCTCATCACATAGGAACCGAGTTATCACCATTCCTAAAGATGGCCAGAACTCTTCATCAAGTAT
108903 GAG-
130 GAGT
* * *
108906 CAGTGTCATCCCTCGACCAGACCTCCTCATCACGTAGGAGCTGTGTCACCCATAGATAACCAG-C
1 C-GTGTCATCCC-CGACCAGATCTCTTCATCACGTAGGAGCCGTGTCACCCATAGATAACCAGTC
* *
108970 TGTCCTCATCACGTAGGAACCGAGTTATCATCATTCCTAAAGATGGCCAGAACTCTTCATCAAGT
64 -GTCCTCATCACATAGGAACCGAGTTATCACCATTCCTAAAGATGGCCAGAACTCTTCATCAAGT
109035 ATGAGT
128 ATGAGT
* * *
109041 CGTTTCATCCACCGACCAGATCTCTTCATCACTTAGGAACCGTGTCACC
1 CGTGTCATCC-CCGACCAGATCTCTTCATCACGTAGGAGCCGTGTCACC
109090 TTTAGACGAC
Statistics
Matches: 159, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
132 2 0.01
133 78 0.49
134 77 0.48
135 2 0.01
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (133 bp):
CGTGTCATCCCCGACCAGATCTCTTCATCACGTAGGAGCCGTGTCACCCATAGATAACCAGTCGT
CCTCATCACATAGGAACCGAGTTATCACCATTCCTAAAGATGGCCAGAACTCTTCATCAAGTATG
AGT
Found at i:110855 original size:4 final size:4
Alignment explanation
Indices: 110846--110878 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
110836 TTAATCATTG
*
110846 TTAT TTAT TTAT TTAT TTAT TTAT GTAT TTAT T
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT T
110879 GTTTCTAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (4 bp):
TTAT
Found at i:111002 original size:4 final size:4
Alignment explanation
Indices: 110993--111030 Score: 51
Period size: 4 Copynumber: 9.8 Consensus size: 4
110983 CTAACCATTG
* *
110993 TTTA TTTA TTTA TTTA TTTG TTTT TTTA TTTA -TTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
111031 CTAATATTCG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
3 3 0.10
4 27 0.90
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (4 bp):
TTTA
Found at i:111015 original size:20 final size:19
Alignment explanation
Indices: 110990--111030 Score: 64
Period size: 20 Copynumber: 2.1 Consensus size: 19
110980 ATTCTAACCA
110990 TTGTTTATTTATTTATTTAT
1 TTGTTTATTTATTTA-TTAT
*
111010 TTGTTTTTTTATTTATTAT
1 TTGTTTATTTATTTATTAT
111029 TT
1 TT
111031 CTAATATTCG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.78
Consensus pattern (19 bp):
TTGTTTATTTATTTATTAT
Found at i:111026 original size:148 final size:146
Alignment explanation
Indices: 110807--111115 Score: 422
Period size: 148 Copynumber: 2.1 Consensus size: 146
110797 TTATTTACTA
*
110807 CTAACTACTAACTTTTATTTTATTACACTTTAATCATTGTTATTTATTTATTTATTTATTTATGT
1 CTAACTACTAACTTTTATTTTATTACACTTTAACCATTGTTATTTATTTATTTATTTATTTATGT
* * * * * *
110872 ATTTATTGTTTCTAATATTCGATTCGGCGTTGTGGTGATCCGATCCGGGGTATGATCCACATTAT
66 ATTTATTATTTCTAATATTCGATTCGACCTTGTGGTGACCCGATCCAGGGTATAATCCACATTAT
*
110937 TATGGTTCAGACTCTT
131 TATGGTTCAGACTCTG
* * * *
110953 CTAACTACTGACTTTTATTTTTATTGCA-TTCTAACCATTGTTTATTTATTTATTTATTTGTTTT
1 CTAACTACTAACTTTTA-TTTTATTACACTT-TAACCATTG-TTATTTATTTATTTATTTATTTA
* * *
111017 TTTATTTATTATTTCTAATATTCGATTCGACCTTGTGGTGACCCGATCTAGGGTATAATCCGCAT
63 TGTATTTATTATTTCTAATATTCGATTCGACCTTGTGGTGACCCGATCCAGGGTATAATCCACAT
*
111082 TATTATGGTTCGGACTCTG
128 TATTATGGTTCAGACTCTG
**
111101 CTAACCGCTAACTTT
1 CTAACTACTAACTTT
111116 CCCAACAACT
Statistics
Matches: 141, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
146 18 0.13
147 17 0.12
148 106 0.75
ACGTcount: A:0.23, C:0.16, G:0.13, T:0.48
Consensus pattern (146 bp):
CTAACTACTAACTTTTATTTTATTACACTTTAACCATTGTTATTTATTTATTTATTTATTTATGT
ATTTATTATTTCTAATATTCGATTCGACCTTGTGGTGACCCGATCCAGGGTATAATCCACATTAT
TATGGTTCAGACTCTG
Found at i:121640 original size:39 final size:38
Alignment explanation
Indices: 121582--121788 Score: 211
Period size: 39 Copynumber: 5.3 Consensus size: 38
121572 TCTAGGACTT
* * * *
121582 GTAAGACCTTACTGTAGGCTCATCGCCTTTGTGATCAGG
1 GTAAGTCCTTACCGCAGGCTCATCG-CTTTGTGCTCAGG
121621 GTAAGTCCTTACCGCAGGCTTC-TCGGCTTTGTGCTCAGG
1 GTAAGTCCTTACCGCAGGC-TCATC-GCTTTGTGCTCAGG
*
121660 GTAAGTCCTTACCCCAGGCT-ACTCAGCTTTGTGCTCAGG
1 GTAAGTCCTTACCGCAGGCTCA-TC-GCTTTGTGCTCAGG
* * * * * *
121699 TTATGTCTTTACCACAGGCTCCTTTGCTTTGTGCTCAGG
1 GTAAGTCCTTACCGCAGGCT-CATCGCTTTGTGCTCAGG
* * *
121738 GTAAGTCCTTACCGCAGGCTCCTTTGCTTTATGCTCAGG
1 GTAAGTCCTTACCGCAGGCT-CATCGCTTTGTGCTCAGG
121777 GTAAGTCCTTAC
1 GTAAGTCCTTAC
121789 TGAAAGTCCT
Statistics
Matches: 145, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
38 1 0.01
39 140 0.97
40 4 0.03
ACGTcount: A:0.16, C:0.27, G:0.24, T:0.33
Consensus pattern (38 bp):
GTAAGTCCTTACCGCAGGCTCATCGCTTTGTGCTCAGG
Found at i:121711 original size:78 final size:78
Alignment explanation
Indices: 121608--121788 Score: 245
Period size: 78 Copynumber: 2.3 Consensus size: 78
121598 GGCTCATCGC
* * *
121608 CTTTGTGATCAGGGTAAGTCCTTACCGCAGGCTTCTCGGCTTTGTGCTCAGGGTAAGTCCTTACC
1 CTTTGTGCTCAGGGTAAGTCCTTACCACAGGCTCCTCGGCTTTGTGCTCAGGGTAAGTCCTTACC
121673 CCAGGCTACTCAG
66 CCAGGCTACTCAG
* * * **
121686 CTTTGTGCTCAGGTTATGTCTTTACCACAGGCTCCTTTGCTTTGTGCTCAGGGTAAGTCCTTACC
1 CTTTGTGCTCAGGGTAAGTCCTTACCACAGGCTCCTCGGCTTTGTGCTCAGGGTAAGTCCTTACC
* * **
121751 GCAGGCTCCTTTG
66 CCAGGCTACTCAG
*
121764 CTTTATGCTCAGGGTAAGTCCTTAC
1 CTTTGTGCTCAGGGTAAGTCCTTAC
121789 TGAAAGTCCT
Statistics
Matches: 87, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
78 87 1.00
ACGTcount: A:0.15, C:0.27, G:0.24, T:0.34
Consensus pattern (78 bp):
CTTTGTGCTCAGGGTAAGTCCTTACCACAGGCTCCTCGGCTTTGTGCTCAGGGTAAGTCCTTACC
CCAGGCTACTCAG
Found at i:122667 original size:21 final size:21
Alignment explanation
Indices: 122655--122704 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
122645 ACTCCACAGA
*
122655 AGGTGGAGTGTACACCAAAAG
1 AGGTGGAGTGTACTCCAAAAG
* *
122676 AGGTGGAGTATACTCCAAAAT
1 AGGTGGAGTGTACTCCAAAAG
122697 AGGTGGAG
1 AGGTGGAG
122705 CTTCGACAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.36, C:0.12, G:0.34, T:0.18
Consensus pattern (21 bp):
AGGTGGAGTGTACTCCAAAAG
Done.