genome.fa.s904.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000904.1 Hibiscus syriacus cultivar Beakdansim tig00001786_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106787

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7155--7185	15	2.1	15	93	0	53	54	0	0	45	0.99
11441--11501	18	3.3	18	90	2	95	42	14	34	8	1.76
28824--30093	635	2.0	634	95	0	2281	26	19	23	30	1.98
62053--62120	3	22.0	3	76	5	64	41	0	1	57	1.08
62047--62127	24	3.4	24	73	21	73	43	0	1	55	1.07
63747--63961	111	1.9	111	82	3	263	39	10	9	40	1.73
68847--68876	2	15.0	2	100	0	60	50	0	0	50	1.00
74090--74169	22	3.6	22	91	0	124	33	15	13	37	1.86
74684--75015	166	2.0	168	88	5	490	36	13	12	37	1.82
75018--75654	76	8.4	76	95	0	1134	23	19	21	35	1.96
75785--75852	3	22.0	3	76	5	64	41	0	1	57	1.08
75779--75859	24	3.4	24	73	21	73	43	0	1	55	1.07
77481--77688	111	1.9	111	80	6	242	38	9	8	43	1.68
80170--80281	12	9.4	11	70	16	64	38	0	1	59	1.08
80230--80318	38	2.3	37	81	12	101	43	0	1	55	1.07
80179--80335	64	2.5	63	92	5	257	41	0	1	56	1.10
80330--80391	19	3.3	19	78	15	58	37	1	0	61	1.06
80845--80905	31	2.0	31	86	0	86	47	6	4	40	1.51
90962--91005	23	1.9	23	90	0	70	45	9	11	34	1.72
90921--91083	87	1.9	87	93	0	281	42	11	13	32	1.80
91131--91636	200	2.5	200	87	2	709	31	14	15	38	1.88
94263--94310	19	2.5	19	89	0	69	50	8	8	33	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95926--96884	196	4.9	196	88	2	1333	32	16	14	37	1.88
95926--96884	394	2.4	387	90	3	1476	32	16	14	37	1.88
100995--101730	201	3.7	201	92	2	1171	32	14	15	36	1.88
102606--103207	180	3.3	181	88	2	922	26	18	13	41	1.87
103029--103914	182	5.1	162	79	10	631	26	16	13	43	1.85
103197--103985	182	4.3	182	91	0	1186	26	15	13	44	1.84
104255--104326	36	2.0	36	100	0	144	30	13	27	27	1.94

Tables:   1

The End!