Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009040.1 Hibiscus syriacus cultivar Beakdansim tig00112448_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106360
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.34
Found at i:179 original size:22 final size:22
Alignment explanation
Indices: 151--202 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
141 ATCGGTACAC
* * *
151 TGTTCACGATATTGTTCATTAA
1 TGTTCACAATACTGTTCAATAA
*
173 TGTTCACAATACTGTTCAATAC
1 TGTTCACAATACTGTTCAATAA
195 TGTTCACA
1 TGTTCACA
203 GAACTATTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.29, C:0.19, G:0.12, T:0.40
Consensus pattern (22 bp):
TGTTCACAATACTGTTCAATAA
Found at i:252 original size:19 final size:20
Alignment explanation
Indices: 214--253 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
204 AACTATTTAC
*
214 ACAATATCGATACAATTCAT
1 ACAATATAGATACAATTCAT
*
234 ACAATATAG-TACTATTCAT
1 ACAATATAGATACAATTCAT
253 A
1 A
254 AAAACATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.45, C:0.17, G:0.05, T:0.33
Consensus pattern (20 bp):
ACAATATAGATACAATTCAT
Found at i:6633 original size:131 final size:131
Alignment explanation
Indices: 6393--6771 Score: 406
Period size: 131 Copynumber: 2.9 Consensus size: 131
6383 ATAATAATAT
* * ** *
6393 TCAAATTAATATTGAATTTTAGGATAAAATAGTAATATCTCTTCATTTTGATTGGAGTAATAAAT
1 TCAAATTAATATTCAATTTTAGAACGAAATAGTAATATCTCTTTATTTTGATTGGAGTAATAAAT
* ** * * * * *
6458 GACTAATTAAAGGTATGAGAGATCATTTATTCTCGATTGAAAATAATTGGATATTATCATTTTCT
66 GAATGCTTTAAGGCATGAGAGGTCATTTATTCTCAATTGAAAATAATTAGATATTATCATTTTCT
6523 C
131 C
** * * *
6524 TCGGATTAATATTTAATTTTAGAACGAAATAGTAATATCTCTTTATTTCGATTGGAGTATTAAAT
1 TCAAATTAATATTCAATTTTAGAACGAAATAGTAATATCTCTTTATTTTGATTGGAGTAATAAAT
* * *
6589 AAATGCTTTAAGGCATGAGAGGTCATTTATTCTCAATT-AGAAATACTTAGATATTATCGTTTTC
66 GAATGCTTTAAGGCATGAGAGGTCATTTATTCTCAATTGA-AAATAATTAGATATTATCATTTTC
6653 TC
130 TC
* * * * *
6655 TCAAATTAAT-TTCAAATTTATAAGGAAATAGTAATAT-T-TCTATTTTGATTGGAGTAAAAAAT
1 TCAAATTAATATTCAATTTTAGAACGAAATAGTAATATCTCTTTATTTTGATTGGAGTAATAAAT
* * ** * * * * *
6717 GATTGCTCTAAGGCATGAGAGGTTGTTTCTTCTCGATAGAAGATAATTAAATATT
66 GAATGCTTTAAGGCATGAGAGGTCATTTATTCTCAATTGAAAATAATTAGATATT
6772 TCTTTTTTCC
Statistics
Matches: 205, Mismatches: 41, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
128 62 0.30
129 2 0.01
130 24 0.12
131 117 0.57
ACGTcount: A:0.36, C:0.09, G:0.15, T:0.40
Consensus pattern (131 bp):
TCAAATTAATATTCAATTTTAGAACGAAATAGTAATATCTCTTTATTTTGATTGGAGTAATAAAT
GAATGCTTTAAGGCATGAGAGGTCATTTATTCTCAATTGAAAATAATTAGATATTATCATTTTCT
C
Found at i:16534 original size:14 final size:14
Alignment explanation
Indices: 16501--16549 Score: 62
Period size: 14 Copynumber: 3.5 Consensus size: 14
16491 ACCTGAACTA
*
16501 AGTCAACTCGTCTG
1 AGTCAACTCATCTG
* *
16515 AATCAACTCATCCG
1 AGTCAACTCATCTG
*
16529 AGTCAACTTATCTG
1 AGTCAACTCATCTG
16543 AGTCAAC
1 AGTCAAC
16550 CCATTTACTT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.27
Consensus pattern (14 bp):
AGTCAACTCATCTG
Found at i:20682 original size:134 final size:135
Alignment explanation
Indices: 20423--20682 Score: 335
Period size: 134 Copynumber: 1.9 Consensus size: 135
20413 CTAAAACTTT
* * *
20423 CAGATCTGATTTTCCCTAAAGAAGCAGCGGAGCAAATCCCTTGTTTTTCTAGATTTGATCTTCCC
1 CAGATCTGATTTTCCCTAAAGAAGCAGCGGAACAAATCCCTTCTTTTTATAGATTTGATCTTCCC
* * * * *
20488 AGAGGAACAGTGGAACAAGTCTATCTCGATTCAATCTTCCCAGAAGAACAATGGAGTGAATCAAC
66 AGAAGAACAGTGGAACAAGTCTACCTCGATTCAATATTCCCAGAAAAACAATGGAATGAATCAAC
20553 GTCTC
131 GTCTC
* * * * *
20558 CAGATTTGATTTTCCCTGAAGAAGTAGTGGAACATAT-CC-TCTTTTTATAGATTTGATCTTCCC
1 CAGATCTGATTTTCCCTAAAGAAGCAGCGGAACAAATCCCTTCTTTTTATAGATTTGATCTTCCC
* * * * *
20621 TGAAGAAGCAGTGGAACAAGTTTGCCTCGATTCAATATTCCCTGAAAAACAGTGGAATGAAT
66 AGAAGAA-CAGTGGAACAAGTCTACCTCGATTCAATATTCCCAGAAAAACAATGGAATGAAT
20683 AAACATTTCC
Statistics
Matches: 106, Mismatches: 18, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
133 27 0.25
134 48 0.45
135 31 0.29
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (135 bp):
CAGATCTGATTTTCCCTAAAGAAGCAGCGGAACAAATCCCTTCTTTTTATAGATTTGATCTTCCC
AGAAGAACAGTGGAACAAGTCTACCTCGATTCAATATTCCCAGAAAAACAATGGAATGAATCAAC
GTCTC
Found at i:20711 original size:134 final size:131
Alignment explanation
Indices: 20466--20722 Score: 300
Period size: 134 Copynumber: 1.9 Consensus size: 131
20456 AAATCCCTTG
* * * *
20466 TTTTTCTAGATTTGATCTTCCCAGAGGAACAGTGGAACAAGTCTATCTCGATTCAATCTTCCCAG
1 TTTTTATAGATTTGATCTTCCCAGAAGAACAGTGGAACAAGTCTACCTCGATTCAATATTCCCAG
* * * * * * *
20531 AAGAACAATGGAGTGAATCAACGTCTCCAGATTTGATTTTCCCTGAAGAAGTAGTGGAACATATC
66 AAAAACAATGGAATGAATAAACATCTCCAAATTT-ATTTACCCTGAAGAA-CAGTGGAACATATC
20596 CTC
129 CTC
* * * *
20599 TTTTTATAGATTTGATCTTCCCTGAAGAAGCAGTGGAACAAGTTTGCCTCGATTCAATATTCCCT
1 TTTTTATAGATTTGATCTTCCCAGAAGAA-CAGTGGAACAAGTCTACCTCGATTCAATATTCCCA
* * *
20664 GAAAAACAGTGGAATGAATAAACATTTCCAAATCTT-TTCTACTCTGAAGAACAGTGGAA
65 GAAAAACAATGGAATGAATAAACATCTCCAAAT-TTATT-TACCCTGAAGAACAGTGGAA
20723 TGAATAAACA
Statistics
Matches: 103, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
133 35 0.34
134 66 0.64
135 2 0.02
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (131 bp):
TTTTTATAGATTTGATCTTCCCAGAAGAACAGTGGAACAAGTCTACCTCGATTCAATATTCCCAG
AAAAACAATGGAATGAATAAACATCTCCAAATTTATTTACCCTGAAGAACAGTGGAACATATCCT
C
Found at i:20988 original size:12 final size:12
Alignment explanation
Indices: 20960--21010 Score: 57
Period size: 12 Copynumber: 4.2 Consensus size: 12
20950 ATATTAATTA
*
20960 TTATTATTACTT
1 TTATTATTATTT
*
20972 CTATTATTATTT
1 TTATTATTATTT
*
20984 TTATTTTTTATTT
1 TTA-TTATTATTT
*
20997 ATATTATTATTT
1 TTATTATTATTT
21009 TT
1 TT
21011 CTTTTTTTCT
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
12 21 0.68
13 10 0.32
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.73
Consensus pattern (12 bp):
TTATTATTATTT
Found at i:22179 original size:109 final size:109
Alignment explanation
Indices: 21966--22201 Score: 307
Period size: 109 Copynumber: 2.2 Consensus size: 109
21956 AGTTAGTCGC
* * ** * *
21966 GTTTTTACATGTTGGTCACCTGTTAGGACGGAAGTTGTTATTTACCCGTTTTTATGCATGTTATA
1 GTTTTTGCATGTTGGTCACCTGATAGGACCAAAGTTGTTATTTACCCATTTTCATGCATGTTATA
*
22031 TATTTTTGGGATATTTGTTGTTTAGTCCCCCATAGTTTA-GCGT
66 TATTTTTGGGATATTTATTGTTTAGTCCCCCATAGTTTAGGCGT
* *
22074 GTTTTTTGCATGTTGGTCACCT-ATAGGGACCAAAGTTGTTATTTACTCATTTTCATGTATGTTA
1 G-TTTTTGCATGTTGGTCACCTGATA-GGACCAAAGTTGTTATTTACCCATTTTCATGCATGTTA
* * *
22138 TGTATTTTTTGGATTATTTATTGTTTAGTCCCCCTTA-TTTAGGCGT
64 TATATTTTTGGGA-TATTTATTGTTTAGTCCCCCATAGTTTAGGCGT
*
22184 GTTTTTGCATTTTGGTCA
1 GTTTTTGCATGTTGGTCA
22202 TGTGTAGTGA
Statistics
Matches: 111, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
108 3 0.03
109 82 0.74
110 26 0.23
ACGTcount: A:0.18, C:0.14, G:0.20, T:0.48
Consensus pattern (109 bp):
GTTTTTGCATGTTGGTCACCTGATAGGACCAAAGTTGTTATTTACCCATTTTCATGCATGTTATA
TATTTTTGGGATATTTATTGTTTAGTCCCCCATAGTTTAGGCGT
Found at i:22569 original size:24 final size:24
Alignment explanation
Indices: 22542--22591 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
22532 TCTAGTCCTA
* *
22542 TTTGCATTTTG-TTTTATTTTAATT
1 TTTGCATGTTGCTTTTATGTT-ATT
22566 TTTGCATGTTGCTTTTATGTTATT
1 TTTGCATGTTGCTTTTATGTTATT
22590 TT
1 TT
22592 ATTTTAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 15 0.65
25 8 0.35
ACGTcount: A:0.14, C:0.06, G:0.12, T:0.68
Consensus pattern (24 bp):
TTTGCATGTTGCTTTTATGTTATT
Found at i:23278 original size:131 final size:130
Alignment explanation
Indices: 23043--23430 Score: 451
Period size: 131 Copynumber: 3.0 Consensus size: 130
23033 AATAACATTT
* * *
23043 GAATTAATATTGAATTTTAGGATG-AATAGTAATATATCTTTATTTCGATTAGAGTAATAAATGA
1 GAATTAATATTAAATTTTAGGACGAAATAGTAATATATCTTTATTTCGATTGGAGTAATAAATG-
* * * **
23107 ATACTTTAAGGTATGAGAGGACATTTATTCTAAATTGGAAATAATTAGATATTATCGTTTTCTCT
65 ATTCTTTAAGGCATGAGAGGTCATTTATTCTCGATTGGAAATAATTAGATATTATCGTTTTCTCT
23172 C
130 C
* * * * *
23173 GGATTAATATTTAATTTTAGGACGAAATAGAAATATCTCTTCATTTCGATTGGAGTAATAAATGA
1 GAATTAATATTAAATTTTAGGACGAAATAGTAATATATCTTTATTTCGATTGGAGTAATAAATGA
*
23238 CTTCTTTAAGGCATGAGAGGTCATTTATTCTCGATTGGAAATACTTAGATATTATCGTTTTCTCT
66 -TTCTTTAAGGCATGAGAGGTCATTTATTCTCGATTGGAAATAATTAGATATTATCGTTTTCTCT
23303 C
130 C
* * * * * *
23304 GAATTAATATCAAATTTTAGAAGGAAATAGTAATATTTTTTTTACTTT-GATTGGAGTAA-GAAT
1 GAATTAATATTAAATTTTAGGACGAAATAGTAATA-TATCTTTA-TTTCGATTGGAGTAATAAAT
* * * * * * *
23367 GATTGCTTTAAGGCATGAGATGTCGTTTCTTCTCGA-TAGAAGATAATTAAATATTTTCTTTTTC
64 GATT-CTTTAAGGCATGAGAGGTCATTTATTCTCGATTGGAA-ATAATTAGATATTATCGTTTTC
23431 CCTCCTAAAA
Statistics
Matches: 221, Mismatches: 31, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
130 28 0.13
131 174 0.79
132 16 0.07
133 3 0.01
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.41
Consensus pattern (130 bp):
GAATTAATATTAAATTTTAGGACGAAATAGTAATATATCTTTATTTCGATTGGAGTAATAAATGA
TTCTTTAAGGCATGAGAGGTCATTTATTCTCGATTGGAAATAATTAGATATTATCGTTTTCTCTC
Found at i:24415 original size:20 final size:20
Alignment explanation
Indices: 24390--24428 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
24380 TAGTCTTTAA
*
24390 AAACCATCTAGAAACATTAG
1 AAACCATCAAGAAACATTAG
24410 AAACCATCAAGAAACATTA
1 AAACCATCAAGAAACATTA
24429 AAGAAAACGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.54, C:0.21, G:0.08, T:0.18
Consensus pattern (20 bp):
AAACCATCAAGAAACATTAG
Found at i:34829 original size:33 final size:30
Alignment explanation
Indices: 34737--34856 Score: 84
Period size: 28 Copynumber: 3.9 Consensus size: 30
34727 GGTAATTAGA
* * *
34737 TGAAAAAAATCAAATACTTAAGGTACTTATTT
1 TGAAAAAAA--AAATAGTTTAGATACTTATTT
* * *
34769 TG--ACAAAAAATATTTTA-AGTACCTATTT
1 TGAAAAAAAAAATAGTTTAGA-TACTTATTT
34797 TGATAAATAAAAAATAAGTTTAGATACTTATTT
1 TGA-AAA-AAAAAAT-AGTTTAGATACTTATTT
* * *
34830 TGACAAAAAGAATATTTTAGATACTTA
1 TGAAAAAAAAAATAGTTTAGATACTTA
34857 AATGAAGAAA
Statistics
Matches: 70, Mismatches: 11, Indels: 16
0.72 0.11 0.16
Matches are distributed among these distances:
28 18 0.26
30 17 0.24
31 7 0.10
32 11 0.16
33 16 0.23
34 1 0.01
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.37
Consensus pattern (30 bp):
TGAAAAAAAAAATAGTTTAGATACTTATTT
Found at i:34851 original size:30 final size:29
Alignment explanation
Indices: 34760--34856 Score: 99
Period size: 30 Copynumber: 3.2 Consensus size: 29
34750 ATACTTAAGG
34760 TACTTATTTTGAC-AAAAAATATTTTA-A
1 TACTTATTTTGACAAAAAAATATTTTAGA
* * *
34787 GTACCTATTTTGATAAATAAAAAATAAGTTTAGA
1 -TACTTATTTTG--ACA-AAAAAAT-ATTTTAGA
34821 TACTTATTTTGACAAAAAGAATATTTTAGA
1 TACTTATTTTGACAAAAA-AATATTTTAGA
34851 TACTTA
1 TACTTA
34857 AATGAAGAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
28 10 0.18
30 18 0.32
31 5 0.09
32 7 0.12
33 15 0.27
34 1 0.02
ACGTcount: A:0.44, C:0.07, G:0.08, T:0.40
Consensus pattern (29 bp):
TACTTATTTTGACAAAAAAATATTTTAGA
Found at i:38776 original size:11 final size:11
Alignment explanation
Indices: 38747--38777 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
38737 TCATATCTGT
*
38747 TTCATATCATA
1 TTCATATTATA
38758 TTCATATTATA
1 TTCATATTATA
38769 TTCATATTA
1 TTCATATTA
38778 CATTTGTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.35, C:0.13, G:0.00, T:0.52
Consensus pattern (11 bp):
TTCATATTATA
Found at i:41109 original size:3 final size:3
Alignment explanation
Indices: 41095--41126 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
41085 AGAGATATTC
*
41095 TCT TCA TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
41127 ATGTACGAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.03, C:0.34, G:0.00, T:0.62
Consensus pattern (3 bp):
TCT
Found at i:42453 original size:31 final size:31
Alignment explanation
Indices: 42415--42570 Score: 278
Period size: 31 Copynumber: 5.0 Consensus size: 31
42405 AGGGTCGAGG
42415 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
42446 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
42477 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
42508 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
* *
42539 GTTTACCTAGGTTCTTCAGGATC-TATGGACT
1 GTTTACCTATGTTCTTCGGGA-CATATGGACT
42570 G
1 G
42571 GTCCTTCGGG
Statistics
Matches: 122, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
31 121 0.99
32 1 0.01
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.38
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:47926 original size:42 final size:41
Alignment explanation
Indices: 47866--47958 Score: 168
Period size: 42 Copynumber: 2.2 Consensus size: 41
47856 TTTCCCTCTA
*
47866 TTTTATTTTTCCTTTTCCTCATTTCAAGTATTGGTTGTTTT
1 TTTTTTTTTTCCTTTTCCTCATTTCAAGTATTGGTTGTTTT
47907 TTTTTTTTTTGCCTTTTCCTCATTTCAAGTATTGGTTGTTTT
1 TTTTTTTTTT-CCTTTTCCTCATTTCAAGTATTGGTTGTTTT
47949 TTTTTTTTTT
1 TTTTTTTTTT
47959 TGAAAAAATA
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 9 0.18
42 41 0.82
ACGTcount: A:0.10, C:0.13, G:0.10, T:0.68
Consensus pattern (41 bp):
TTTTTTTTTTCCTTTTCCTCATTTCAAGTATTGGTTGTTTT
Found at i:53808 original size:28 final size:27
Alignment explanation
Indices: 53714--53818 Score: 93
Period size: 28 Copynumber: 3.6 Consensus size: 27
53704 TTTTTTCAGT
53714 TAAGTATTTAAAGTATTTGTTGGTCAAAA
1 TAAGTATTTAAAGTATTT-TT-GTCAAAA
* *
53743 TAAATATGTAAAGTTATTTTTTTTGTCAAAA
1 TAAGTATTTAAAG-TA---TTTTTGTCAAAA
* *
53774 GAAGTATCTAAAGTATTTTATGTCAAAA
1 TAAGTATTTAAAGTATTTT-TGTCAAAA
* *
53802 TATGTATTTAAACTATT
1 TAAGTATTTAAAGTATT
53819 CAAACATTTT
Statistics
Matches: 62, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
27 4 0.06
28 21 0.34
29 11 0.18
30 4 0.06
31 17 0.27
32 2 0.03
33 3 0.05
ACGTcount: A:0.39, C:0.05, G:0.12, T:0.44
Consensus pattern (27 bp):
TAAGTATTTAAAGTATTTTTGTCAAAA
Found at i:56139 original size:20 final size:20
Alignment explanation
Indices: 56114--56156 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
56104 GTTCTATAGA
* *
56114 ATTTTAAGATTTTATATTCG
1 ATTTTAAAATTATATATTCG
56134 ATTTTAAAATTATATATTCG
1 ATTTTAAAATTATATATTCG
56154 ATT
1 ATT
56157 AAATTATTCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.35, C:0.05, G:0.07, T:0.53
Consensus pattern (20 bp):
ATTTTAAAATTATATATTCG
Found at i:56158 original size:18 final size:18
Alignment explanation
Indices: 56116--56163 Score: 53
Period size: 20 Copynumber: 2.6 Consensus size: 18
56106 TCTATAGAAT
*
56116 TTTAAGATTTTATATTCGA
1 TTTAA-ATTATATATTCGA
56135 TTTTAAAATTATATATTCGA
1 -TTT-AAATTATATATTCGA
56155 -TTAAATTAT
1 TTTAAATTAT
56164 TCGAATATCA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 7 0.27
18 2 0.08
20 15 0.58
21 2 0.08
ACGTcount: A:0.38, C:0.04, G:0.06, T:0.52
Consensus pattern (18 bp):
TTTAAATTATATATTCGA
Found at i:61498 original size:15 final size:15
Alignment explanation
Indices: 61480--61509 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
61470 AAAACCATGT
61480 TAGATAAAAAGGTAA
1 TAGATAAAAAGGTAA
61495 TAGATAAAAAGGTAA
1 TAGATAAAAAGGTAA
61510 GAAATAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.20, T:0.20
Consensus pattern (15 bp):
TAGATAAAAAGGTAA
Found at i:61516 original size:15 final size:15
Alignment explanation
Indices: 61483--61517 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
61473 ACCATGTTAG
* *
61483 ATAAAAAGGTAATAG
1 ATAAAAAGGTAAGAA
61498 ATAAAAAGGTAAGAA
1 ATAAAAAGGTAAGAA
61513 ATAAA
1 ATAAA
61518 TAAATTAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.17, T:0.17
Consensus pattern (15 bp):
ATAAAAAGGTAAGAA
Found at i:61573 original size:26 final size:26
Alignment explanation
Indices: 61524--61616 Score: 66
Period size: 26 Copynumber: 3.5 Consensus size: 26
61514 TAAATAAATT
* * *
61524 AATTAAATTAAA-ATAAAGAGAAAACA
1 AATTAAATAAAAGAT-AAGATAAAAAA
61550 AATTAAATAAAAGATAAGATAAAAAA
1 AATTAAATAAAAGATAAGATAAAAAA
** * *
61576 AACAAAGATAAAATAGTAAG-TAAAATA
1 AATTAA-ATAAAAGA-TAAGATAAAAAA
61603 AATATAAA-AAAAGA
1 AAT-TAAATAAAAGA
61617 AGAAAAAGAA
Statistics
Matches: 53, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
26 29 0.55
27 18 0.34
28 6 0.11
ACGTcount: A:0.71, C:0.02, G:0.09, T:0.18
Consensus pattern (26 bp):
AATTAAATAAAAGATAAGATAAAAAA
Found at i:61658 original size:4 final size:4
Alignment explanation
Indices: 61628--61733 Score: 51
Period size: 4 Copynumber: 26.8 Consensus size: 4
61618 GAAAAAGAAG
* * *
61628 AAAT AAAT ATAG AAAT AAAAC AAAT AAAT AAA- ATAAT AAA- AAAGT AAA-
1 AAAT AAAT AAAT AAAT -AAAT AAAT AAAT AAAT A-AAT AAAT AAA-T AAAT
* * * * * *
61676 ATAAT ATAT ATAT AAAT AAA- AAAT AAA- AAGT AAAT ATAT ATAT ATAT
1 A-AAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
*
61723 AAAT TAAT AAA
1 AAAT AAAT AAA
61734 ACTGATAATA
Statistics
Matches: 79, Mismatches: 14, Indels: 18
0.71 0.13 0.16
Matches are distributed among these distances:
3 10 0.13
4 61 0.77
5 8 0.10
ACGTcount: A:0.70, C:0.01, G:0.03, T:0.26
Consensus pattern (4 bp):
AAAT
Found at i:61665 original size:21 final size:20
Alignment explanation
Indices: 61628--61703 Score: 57
Period size: 21 Copynumber: 3.6 Consensus size: 20
61618 GAAAAAGAAG
*
61628 AAATAAATATAGA-AATAAAA
1 AAATAAATA-AAATAATAAAA
61648 CAAATAAATAAAATAATAAAA
1 -AAATAAATAAAATAATAAAA
* *
61669 AAGTAAAATAATATATATATAAAT
1 AAAT-AAATAA-A-ATA-ATAAAA
61693 AAA-AAATAAAA
1 AAATAAATAAAA
61704 AGTAAATATA
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
20 6 0.13
21 23 0.50
22 7 0.15
23 3 0.07
24 7 0.15
ACGTcount: A:0.74, C:0.01, G:0.03, T:0.22
Consensus pattern (20 bp):
AAATAAATAAAATAATAAAA
Found at i:61679 original size:34 final size:34
Alignment explanation
Indices: 61640--61719 Score: 92
Period size: 36 Copynumber: 2.3 Consensus size: 34
61630 ATAAATATAG
61640 AAATAA-A-ACAAATAAATAAAATAATAAAAAAGTA
1 AAATAATATACAAATAAATAAAA-AAT-AAAAAGTA
* *
61674 AAATAATATATATATAAATAAAAAATAAAAAGTA
1 AAATAATATACAAATAAATAAAAAATAAAAAGTA
61708 AATATATATATA
1 AA-ATA-ATATA
61720 TATAAATTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
34 16 0.40
35 7 0.17
36 17 0.43
ACGTcount: A:0.71, C:0.01, G:0.03, T:0.25
Consensus pattern (34 bp):
AAATAATATACAAATAAATAAAAAATAAAAAGTA
Found at i:61694 original size:28 final size:30
Alignment explanation
Indices: 61662--61734 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 30
61652 TAAATAAAAT
61662 AATAAAAAAGT-AAAA-T-AATATATATATA
1 AATAAAAAA-TAAAAAGTAAATATATATATA
61690 AATAAAAAATAAAAAGTAAATATATATATA
1 AATAAAAAATAAAAAGTAAATATATATATA
* *
61720 TATAAATTAATAAAA
1 AATAAA-AAATAAAA
61735 CTGATAATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
27 1 0.03
28 13 0.33
29 1 0.03
30 17 0.44
31 7 0.18
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (30 bp):
AATAAAAAATAAAAAGTAAATATATATATA
Found at i:61720 original size:34 final size:36
Alignment explanation
Indices: 61651--61726 Score: 122
Period size: 34 Copynumber: 2.2 Consensus size: 36
61641 AATAAAACAA
61651 ATAAATAAAATAATAAAAAAGTAAAATAATATATAT
1 ATAAATAAAATAATAAAAAAGTAAAATAATATATAT
61687 ATAAATAAAA-AAT-AAAAAGT-AAATATATATATAT
1 ATAAATAAAATAATAAAAAAGTAAAATA-ATATATAT
61721 ATAAAT
1 ATAAAT
61727 TAATAAAACT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
33 5 0.13
34 21 0.54
35 3 0.08
36 10 0.26
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (36 bp):
ATAAATAAAATAATAAAAAAGTAAAATAATATATAT
Found at i:61795 original size:20 final size:23
Alignment explanation
Indices: 61770--61832 Score: 73
Period size: 22 Copynumber: 2.9 Consensus size: 23
61760 ATATATAATC
61770 TAAAAAAATATATAC-T-AAA-G
1 TAAAAAAATATATACATAAAATG
*
61790 TAAAAAAGA-AAATACATAAAATG
1 TAAAAAA-ATATATACATAAAATG
61813 TAAAAAAATAT-TACATAAAA
1 TAAAAAAATATATACATAAAA
61833 AAAATAACAA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
20 12 0.33
21 2 0.06
22 13 0.36
23 9 0.25
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.22
Consensus pattern (23 bp):
TAAAAAAATATATACATAAAATG
Found at i:62189 original size:34 final size:34
Alignment explanation
Indices: 62146--62214 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
62136 GAATCCTAGC
62146 AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
1 AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
* *
62180 AAAATTCTATCCTATTTTTAGGAGTTTGAATCCT
1 AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
62214 A
1 A
62215 GTAGGACAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (34 bp):
AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
Found at i:62986 original size:106 final size:107
Alignment explanation
Indices: 62676--63305 Score: 563
Period size: 109 Copynumber: 5.9 Consensus size: 107
62666 AATATTGTTC
* * ** *
62676 CGAGT-CCAATATCCTCCG-CTGTGAAGTTGAAATTGGTTCTGGAACCGGGAAATTGTTTGATGA
1 CGAGTGCCAATATCCTCCGTC-GTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGA
** * ** * *
62739 CAGTCAGCCGCCCCTTCACTGTGAAGTTGAGCTTGTGCTGTCT
65 CAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
** * * * * *
62782 CGAGT-ATAATATCTTTCG-CTGTGAAGTTGAAATTGACTCTG-AA---CGAAA-T-CTTGTTGA
1 CGAGTGCCAATATCCTCCGTC-GTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGA
*
62839 CAATCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
65 CAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* * * *
62882 CGAGT-CCAATATCCTTCG-CTGTGAAGTTGAAATTGGCTCTGAAATTTGAAAAATGTTTGTTGA
1 CGAGTGCCAATATCCTCCGTC-GTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGA
* *
62945 CAACCAGCTGTCCCTTCATTGTGAAGTTGAACTTGTGTTGTCT
65 CAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* * * ** * * **
62988 CGAGTGGCACGATATCCTCCGTCGTGGAGTTGAAA-TCGCGGATGAAACT-GAAAAGTTGTTCAT
1 CGAGT-GC-CAATATCCTCCGTCGTGAAGTTGAAATTGGC-TCTGAAATTGGGAAA-TTGTTTGT
* * *
63051 TGACAACCAGTCGTCCCTTCGTTGTGAAGTTGGACTTGTGTTTTCT
62 TGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* * * * * * * *
63097 CGGGTAGCACGATATCCTCCGTCGTGGAGTTGAAATCGGTTCTGGAATTGGGAAGTTGTTCGTTG
1 CGAGT-GC-CAATATCCTCCGTCGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTG
63162 ACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
64 ACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* * * * *
63206 CGGGTAG-CATGATATCCTCCGTCGTGGAGTTGAAATCGGTTCCGAAATTGGGAAATTG-TTGTT
1 CGAGT-GCCA--ATATCCTCCGTCGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTT
* *
63269 GGCAACCAGACGTCCCTTCGTTGTGAAGTTGAACTTG
63 GACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTG
63306 ACTCTAGCTA
Statistics
Matches: 446, Mismatches: 62, Indels: 30
0.83 0.12 0.06
Matches are distributed among these distances:
100 80 0.18
101 3 0.01
102 4 0.01
104 3 0.01
105 3 0.01
106 87 0.20
107 1 0.00
108 48 0.11
109 212 0.48
110 5 0.01
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.33
Consensus pattern (107 bp):
CGAGTGCCAATATCCTCCGTCGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGAC
AACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
Found at i:63067 original size:109 final size:108
Alignment explanation
Indices: 62834--63305 Score: 569
Period size: 109 Copynumber: 4.4 Consensus size: 108
62824 ACGAAATCTT
* *
62834 GTTGACAATCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGT--C-CAATATCC
1 GTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTAGCACGATATCC
* * * * * *
62896 TTCG-CTGTGAAGTTGAAATTGGCTCTGAAATTTGAAAAATGTTT
66 TCCGTC-GTGGAGTTGAAATCGGCGCTGAAA-TTGAAAATTGTTC
* * *
62940 GTTGACAACCAGCTGTCCCTTCATTGTGAAGTTGAACTTGTGTTGTCTCGAGTGGCACGATATCC
1 GTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTAGCACGATATCC
* *
63005 TCCGTCGTGGAGTTGAAATC-GCGGATGAAACTGAAAAGTTGTTC
66 TCCGTCGTGGAGTTGAAATCGGC-GCTGAAATTGAAAA-TTGTTC
* * * * *
63049 ATTGACAACCAGTCGTCCCTTCGTTGTGAAGTTGGACTTGTGTTTTCTCGGGTAGCACGATATCC
1 GTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTAGCACGATATCC
** * * *
63114 TCCGTCGTGGAGTTGAAATCGGTTCTGGAATTGGGAAGTTGTTC
66 TCCGTCGTGGAGTTGAAATCGGCGCTGAAATT-GAAAATTGTTC
* *
63158 GTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGGGTAGCATGATATCC
1 GTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTAGCACGATATCC
** * *
63223 TCCGTCGTGGAGTTGAAATCGGTTCCGAAATTGGGAAATTGTT-
66 TCCGTCGTGGAGTTGAAATCGGCGCTGAAATT-GAAAATTGTTC
* *
63266 GTTGGCAACCAGACGTCCCTTCGTTGTGAAGTTGAACTTG
1 GTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTG
63306 ACTCTAGCTA
Statistics
Matches: 321, Mismatches: 37, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
106 50 0.16
108 47 0.15
109 219 0.68
110 5 0.02
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.33
Consensus pattern (108 bp):
GTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTAGCACGATATCC
TCCGTCGTGGAGTTGAAATCGGCGCTGAAATTGAAAATTGTTC
Found at i:63222 original size:218 final size:213
Alignment explanation
Indices: 62676--63305 Score: 620
Period size: 218 Copynumber: 3.0 Consensus size: 213
62666 AATATTGTTC
* * * ** * * * *
62676 CGAGTCCAATATCCTCCGCTGTGAAGTTGAAATTGGTTCTGGAACCGGGAAATTGTTTGATGACA
1 CGAGTCCAATATCCTCCGCTGTGAAGTTGAAATCGGCTCTGAAATTGGAAAAATGTTCGTTGACA
** * * * * * * *
62741 GTCAGCCGCCCCTTCACTGTGAAGTTGAGCTTGTGCTGTCTCGAGTA-TA--ATATCTTTCG-CT
66 ACCAGCCGTCCCTTCATTGTGAAGTTGAACTTGTGTTGTCTCGAGTAGCACGATATCCTCCGTC-
* * * * * *
62802 GTGAAGTTGAAAT-TGACTCTG-AAC--G-AAA-TCTTGTTGACAATCAGCCGTCCCTTCGTTGT
130 GTGGAGTTGAAATCGGA-TC-GAAACTGGAAAATTGTTATTGACAACCAGACGTCCCTTCGTTGT
62861 GAAGTTGAACTTGTGTTGTCT
193 GAAGTTGAACTTGTGTTGTCT
* * * *
62882 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTTGAAAAATGTTTGTTGACA
1 CGAGTCCAATATCCTCCGCTGTGAAGTTGAAATCGGCTCTGAAATTGGAAAAATGTTCGTTGACA
* *
62947 ACCAGCTGTCCCTTCATTGTGAAGTTGAACTTGTGTTGTCTCGAGTGGCACGATATCCTCCGTCG
66 ACCAGCCGTCCCTTCATTGTGAAGTTGAACTTGTGTTGTCTCGAGTAGCACGATATCCTCCGTCG
*
63012 TGGAGTTGAAATCGCGGAT-GAAACT-GAAAAGTTGTTCATTGACAACCAGTCGTCCCTTCGTTG
131 TGGAGTTGAAAT--CGGATCGAAACTGGAAAA-TTGTT-ATTGACAACCAGACGTCCCTTCGTTG
* *
63075 TGAAGTTGGACTTGTGTTTTCT
192 TGAAGTTGAACTTGTGTTGTCT
* * * * * * **
63097 CGGGTAGCACGATATCCTCCG-TCGTGGAGTTGAAATCGGTTCTGGAATTGGGAAGTTGTTCGTT
1 CGAGT--C-CAATATCCTCCGCT-GTGAAGTTGAAATCGGCTCTGAAATTGGAAAAATGTTCGTT
* * *
63161 GACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGGGTAGCATGATATCCTCC
62 GACAACCAGCCGTCCCTTCATTGTGAAGTTGAACTTGTGTTGTCTCGAGTAGCACGATATCCTCC
* * * * *
63226 GTCGTGGAGTTGAAATCGGTTCCGAAATTGGGAAATTGTTGTTGGCAACCAGACGTCCCTTCGTT
127 GTCGTGGAGTTGAAATCGGAT-CGAAACTGGAAAATTGTTATTGACAACCAGACGTCCCTTCGTT
63291 GTGAAGTTGAACTTG
191 GTGAAGTTGAACTTG
63306 ACTCTAGCTA
Statistics
Matches: 352, Mismatches: 52, Indels: 29
0.81 0.12 0.07
Matches are distributed among these distances:
206 95 0.27
207 1 0.00
209 21 0.06
210 4 0.01
211 2 0.01
212 5 0.01
214 3 0.01
215 47 0.13
216 4 0.01
217 38 0.11
218 128 0.36
219 4 0.01
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.33
Consensus pattern (213 bp):
CGAGTCCAATATCCTCCGCTGTGAAGTTGAAATCGGCTCTGAAATTGGAAAAATGTTCGTTGACA
ACCAGCCGTCCCTTCATTGTGAAGTTGAACTTGTGTTGTCTCGAGTAGCACGATATCCTCCGTCG
TGGAGTTGAAATCGGATCGAAACTGGAAAATTGTTATTGACAACCAGACGTCCCTTCGTTGTGAA
GTTGAACTTGTGTTGTCT
Found at i:63977 original size:67 final size:67
Alignment explanation
Indices: 63905--64042 Score: 222
Period size: 67 Copynumber: 2.1 Consensus size: 67
63895 GGATATAAAT
* *
63905 TCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCATGGGAGACAAAATTTATTTCGAGGGAAACAA
1 TCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTATTTCAAGGGAAACAA
63970 TC
66 TC
* * **
63972 TCAAAGGTTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTCAAGGGAAATTA
1 TCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTATTTCAAGGGAAACAA
64037 TC
66 TC
64039 TCAA
1 TCAA
64043 GAGAGACGAA
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
67 65 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (67 bp):
TCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTATTTCAAGGGAAACAA
TC
Found at i:64041 original size:36 final size:36
Alignment explanation
Indices: 63917--64393 Score: 228
Period size: 36 Copynumber: 13.9 Consensus size: 36
63907 AAAGATTTTG
* * *
63917 TGTTTCAAGAGAAACTGTCTCATGGGAGACAAAATT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
* * ** **
63953 TATTTCGAGGGAAACAATCTCAA-AG-G----TTTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
* *
63983 GTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATT
1 -TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
* * *
64020 TGTTTCAAGGGAAATTATCTCAAGAGAGACGAAATT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
** * * *
64056 CATTTCAAGGGAAA-TGTTTTC-A-A-TG-----TTT
1 TGTTTCAAGGGAAACTG-TCTCAAGAGAGACAAAATT
*
64084 ATGTTTC-AGGAGAAACTGTCTCAAGGGAGACAAAATTT
1 -TGTTTCAAGG-GAAACTGTCTCAAGAGAGACAAAA-TT
* *
64122 TGTTTCAAAGGAAACTATCTCAAGAGAGACAAAATT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
** * * * *
64158 CATTTCAAGGGAAA-TGTTTCCA-A-TG-----TTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
* * *
64186 ATGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTT
1 -TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA-TT
* **
64224 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAACG
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
** * * * *
64260 CATTTCAA-GGAAAATGTTTTC-A-A-TG-----TTT
1 TGTTTCAAGGGAAACTG-TCTCAAGAGAGACAAAATT
* * *
64288 ATGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTT
1 -TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA-TT
*
64326 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAGTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
*
64362 TGTTTCAAGGGAAACTGTCTCAAGATAGACAA
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAA
64394 TGGTGAGCAC
Statistics
Matches: 317, Mismatches: 81, Indels: 86
0.65 0.17 0.18
Matches are distributed among these distances:
28 7 0.02
29 31 0.10
30 18 0.06
31 18 0.06
32 4 0.01
33 4 0.01
34 4 0.01
35 15 0.05
36 118 0.37
37 90 0.28
38 8 0.03
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (36 bp):
TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
Found at i:64136 original size:37 final size:37
Alignment explanation
Indices: 64095--64393 Score: 160
Period size: 37 Copynumber: 8.6 Consensus size: 37
64085 TGTTTCAGGA
*
64095 GAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAAG
1 GAAACTGTCTCAAGAGAGACAAAATTTTGTTTCAAAG
* ** *
64132 GAAACTATCTCAAGAGAGACAAAA-TTCATTTCAAGG
1 GAAACTGTCTCAAGAGAGACAAAATTTTGTTTCAAAG
* **
64168 GAAA-TGTTTC--------CAATGTTTATGTTTC-AAG
1 GAAACTGTCTCAAGAGAGACAAAATTT-TGTTTCAAAG
* * *
64196 AGAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGG
1 -GAAACTGTCTCAAGAGAGACAAAATTTTGTTTCAAAG
* ****
64234 GAAACTATCTCAAGAGAGACAAAA-CGCATTTC-AAG
1 GAAACTGTCTCAAGAGAGACAAAATTTTGTTTCAAAG
* * *
64269 GAAAATGTTTTC-A-A-TG------TTTATGTTTC-AAG
1 GAAACTG-TCTCAAGAGAGACAAAATTT-TGTTTCAAAG
* * *
64298 AGAAACTGTCTCAAGGGAGAAAAAATTTTGTTTCAAGG
1 -GAAACTGTCTCAAGAGAGACAAAATTTTGTTTCAAAG
* *
64336 GAAACTGTCTCAAGAGAGAC-AAAGTTTGTTTCAAGG
1 GAAACTGTCTCAAGAGAGACAAAATTTTGTTTCAAAG
*
64372 GAAACTGTCTCAAGATAGACAA
1 GAAACTGTCTCAAGAGAGACAA
64394 TGGTGAGCAC
Statistics
Matches: 192, Mismatches: 42, Indels: 56
0.66 0.14 0.19
Matches are distributed among these distances:
27 3 0.02
28 4 0.02
29 18 0.09
30 12 0.06
32 1 0.01
33 1 0.01
34 1 0.01
35 12 0.06
36 54 0.28
37 74 0.39
38 12 0.06
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.27
Consensus pattern (37 bp):
GAAACTGTCTCAAGAGAGACAAAATTTTGTTTCAAAG
Found at i:64158 original size:102 final size:102
Alignment explanation
Indices: 63917--64375 Score: 659
Period size: 102 Copynumber: 4.5 Consensus size: 102
63907 AAAGATTTTG
* * * * * * *** * *
63917 TGTTTCAAGAGAAACTGTCTCATGGGAGACAAAATTTATTTCGAGGGAAACAATCTCAAAGGTTT
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTC-AATG-TT
* *
63982 TGTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAA-TT
64 TATGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTT
* *
64020 TGTTTCAAGGGAAATTATCTCAAGAGAGACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
* *
64085 TGTTTCAGGAGAAACTGTCTCAAGGGAGACAAAATTT
66 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTT
* *
64122 TGTTTCAAAGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTCCAATGTTTA
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
64187 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTT
66 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTT
** *
64224 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAACGCATTTCAAGGAAAATGTTTTCAATGTTTA
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
64289 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTT
66 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTT
* * **
64326 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAGTTTGTTTCAAGGGAAA
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAA
64376 CTGTCTCAAG
Statistics
Matches: 322, Mismatches: 33, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
101 36 0.11
102 241 0.75
103 45 0.14
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (102 bp):
TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTT
Found at i:65279 original size:22 final size:22
Alignment explanation
Indices: 65253--65329 Score: 154
Period size: 22 Copynumber: 3.5 Consensus size: 22
65243 TTGTGTTTGG
65253 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
65275 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
65297 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
65319 TCAAAGGTTTG
1 TCAAAGGTTTG
65330 ATGGGGTAGC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 55 1.00
ACGTcount: A:0.23, C:0.13, G:0.27, T:0.36
Consensus pattern (22 bp):
TCAAAGGTTTGGCATTTGATGC
Found at i:65992 original size:8 final size:7
Alignment explanation
Indices: 65980--66050 Score: 52
Period size: 8 Copynumber: 9.0 Consensus size: 7
65970 TGATTTTTGC
65980 TCTTTTT
1 TCTTTTT
65987 TCCTTTTGT
1 T-CTTTT-T
*
65996 TCTTGTT
1 TCTTTTT
66003 TCTCTTTT
1 TCT-TTTT
66011 TCTTTGTTT
1 TC-TT-TTT
*
66020 TTTTTTT
1 TCTTTTT
66027 TGCTTTTT
1 T-CTTTTT
66035 TGCTTCTTT
1 T-CTT-TTT
66044 TCTTTTT
1 TCTTTTT
66051 GGTTCTTGAT
Statistics
Matches: 53, Mismatches: 4, Indels: 14
0.75 0.06 0.20
Matches are distributed among these distances:
7 12 0.23
8 30 0.57
9 11 0.21
ACGTcount: A:0.00, C:0.15, G:0.07, T:0.77
Consensus pattern (7 bp):
TCTTTTT
Found at i:65993 original size:16 final size:17
Alignment explanation
Indices: 65974--66019 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
65964 TCTTTTTGAT
*
65974 TTTTGCTCTTTTTTC-C
1 TTTTGCTCTTGTTTCTC
*
65990 TTTTGTTCTTGTTTCTC
1 TTTTGCTCTTGTTTCTC
*
66007 TTTTTCT-TTGTTT
1 TTTTGCTCTTGTTT
66020 TTTTTTTTGC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
16 19 0.76
17 6 0.24
ACGTcount: A:0.00, C:0.17, G:0.09, T:0.74
Consensus pattern (17 bp):
TTTTGCTCTTGTTTCTC
Found at i:69116 original size:16 final size:13
Alignment explanation
Indices: 69108--69234 Score: 54
Period size: 13 Copynumber: 9.9 Consensus size: 13
69098 AATAGTAAGT
69108 AAAATAAATATAA
1 AAAATAAATATAA
69121 AAAATAAA-A-AA
1 AAAATAAATATAA
* * *
69132 AAGAAGAAAAAGAA
1 AA-AATAAATATAA
*
69146 GAAA-AAATAT-A
1 AAAATAAATATAA
* *
69157 GAAATAAA-ACAA
1 AAAATAAATATAA
69169 ATAAATAAA-AT-A
1 A-AAATAAATATAA
* *
69181 ATAATAAAAAGT-A
1 AAAATAAATA-TAA
*
69194 AAAATAATATATAT
1 AAAATAA-ATATAA
*
69208 AAAATAAAAAATAA
1 AAAAT-AAATATAA
69222 AAAAGTAAATATA
1 AAAA-TAAATATA
69235 TATATATATA
Statistics
Matches: 88, Mismatches: 14, Indels: 23
0.70 0.11 0.18
Matches are distributed among these distances:
11 16 0.18
12 17 0.19
13 28 0.32
14 24 0.27
15 3 0.03
ACGTcount: A:0.76, C:0.01, G:0.06, T:0.18
Consensus pattern (13 bp):
AAAATAAATATAA
Found at i:69183 original size:21 final size:20
Alignment explanation
Indices: 69159--69223 Score: 51
Period size: 23 Copynumber: 3.0 Consensus size: 20
69149 AAAATATAGA
69159 AATAAAACAAATAAATAAAAT
1 AATAAAA-AAATAAATAAAAT
69180 AATAATAAAAAGTAAA-AATAAT
1 AATAA-AAAAA-TAAATAA-AAT
*
69202 ATATATAAAATAAAAAATAAAA
1 A-ATA-AAAA-AATAAATAAAA
69224 AAGTAAATAT
Statistics
Matches: 36, Mismatches: 1, Indels: 12
0.73 0.02 0.24
Matches are distributed among these distances:
21 10 0.28
22 10 0.28
23 11 0.31
24 5 0.14
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.22
Consensus pattern (20 bp):
AATAAAAAAATAAATAAAAT
Found at i:69197 original size:45 final size:45
Alignment explanation
Indices: 69113--69223 Score: 111
Period size: 45 Copynumber: 2.4 Consensus size: 45
69103 TAAGTAAAAT
*
69113 AAATATAAAAAATAAAAAAAAGAAGAAAAAGAAGAAAAAAT-ATAG
1 AAATA-AAAAAATAAATAAAAGAAGAAAAAGAAGAAAAAATAATAG
* * * *
69158 AAATAAAACAAATAAATAAAATAATAATAAA-AAGTAAAAATAATAT
1 AAATAAAA-AAATAAATAAAAGAAGAA-AAAGAAGAAAAAATAATAG
*
69204 ATATAAAATAAA-AAATAAAA
1 AAATAAAA-AAATAAATAAAA
69224 AAGTAAATAT
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
44 3 0.05
45 37 0.66
46 16 0.29
ACGTcount: A:0.77, C:0.01, G:0.05, T:0.17
Consensus pattern (45 bp):
AAATAAAAAAATAAATAAAAGAAGAAAAAGAAGAAAAAATAATAG
Found at i:69199 original size:19 final size:20
Alignment explanation
Indices: 69171--69217 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
69161 TAAAACAAAT
69171 AAAT-AAAATAATA-ATA-A
1 AAATAAAAATAATATATATA
69188 AAAGTAAAAATAATATATATA
1 AAA-TAAAAATAATATATATA
69209 AAATAAAAA
1 AAATAAAAA
69218 ATAAAAAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
17 3 0.12
18 1 0.04
19 9 0.35
20 9 0.35
21 4 0.15
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.23
Consensus pattern (20 bp):
AAATAAAAATAATATATATA
Found at i:69202 original size:27 final size:28
Alignment explanation
Indices: 69167--69234 Score: 77
Period size: 28 Copynumber: 2.4 Consensus size: 28
69157 GAAATAAAAC
*
69167 AAATAAATA-AAATAATAATAAAAAGTAA
1 AAATAAATATAAATAA-AATAAAAAATAA
*
69195 AAAT-AATATATATAAAATAAAAAATAAA
1 AAATAAATATAAATAAAATAAAAAAT-AA
69223 AAAGTAAATATA
1 AAA-TAAATATA
69235 TATATATATA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
27 13 0.38
28 14 0.41
29 1 0.03
30 6 0.18
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (28 bp):
AAATAAATATAAATAAAATAAAAAATAA
Found at i:69225 original size:9 final size:9
Alignment explanation
Indices: 69107--69218 Score: 55
Period size: 9 Copynumber: 11.8 Consensus size: 9
69097 AAATAGTAAG
*
69107 TAAAATAAA
1 TAAAAAAAA
*
69116 TATAAAAAA
1 TAAAAAAAA
69125 TAAAAAAAA
1 TAAAAAAAA
* *
69134 GAAGAAAAA
1 TAAAAAAAA
*
69143 GAAGAAAAAA
1 TAA-AAAAAA
* *
69153 T-ATAGAAA
1 TAAAAAAAA
*
69161 TAAAACAAA
1 TAAAAAAAA
69170 TAAATAAAATAA
1 T-AA-AAAA-AA
*
69182 TAATAAAAAG
1 TAA-AAAAAA
69192 TAAAAATAATA
1 TAAAAA-AA-A
* *
69203 TATATAAAA
1 TAAAAAAAA
69212 TAAAAAA
1 TAAAAAA
69219 TAAAAAAGTA
Statistics
Matches: 78, Mismatches: 18, Indels: 14
0.71 0.16 0.13
Matches are distributed among these distances:
8 5 0.06
9 41 0.53
10 15 0.19
11 14 0.18
12 3 0.04
ACGTcount: A:0.76, C:0.01, G:0.05, T:0.18
Consensus pattern (9 bp):
TAAAAAAAA
Found at i:69238 original size:34 final size:38
Alignment explanation
Indices: 69171--69244 Score: 109
Period size: 35 Copynumber: 2.0 Consensus size: 38
69161 TAAAACAAAT
69171 AAATAAAATAATAATAAAAAGTAAAAATAATATATATA
1 AAATAAAATAATAATAAAAAGTAAAAATAATATATATA
*
69209 AAATAAAA-AAT-A-AAAAAGTAAATATATATATATATA
1 AAATAAAATAATAATAAAAAGTAAAAATA-ATATATATA
69245 TATATAATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
35 13 0.38
36 10 0.29
37 3 0.09
38 8 0.24
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (38 bp):
AAATAAAATAATAATAAAAAGTAAAAATAATATATATA
Found at i:69320 original size:24 final size:23
Alignment explanation
Indices: 69293--69360 Score: 68
Period size: 23 Copynumber: 2.9 Consensus size: 23
69283 TATATATATC
* *
69293 TAAAAAATAAAATATATACTAAA-G
1 TAAAAAAGAAAATACATA--AAATG
69317 TAAAAAAGAAAATACATAAAATG
1 TAAAAAAGAAAATACATAAAATG
*
69340 TAAAAAA-AATATTACATAAAA
1 TAAAAAAGAA-AATACATAAAA
69361 AAAATAAATA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
22 5 0.13
23 18 0.46
24 16 0.41
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.22
Consensus pattern (23 bp):
TAAAAAAGAAAATACATAAAATG
Found at i:69721 original size:34 final size:34
Alignment explanation
Indices: 69678--69746 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
69668 GAATCCTAGC
69678 AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
1 AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
* *
69712 AAAATTCTATCCTATTTTTAGGAGTTTGAATCCT
1 AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
69746 A
1 A
69747 GTAGGACGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (34 bp):
AAAATTCTATCATATCTTTAGGAGTTTGAATCCT
Found at i:73183 original size:20 final size:20
Alignment explanation
Indices: 73160--73202 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
73150 GTCCTATTGA
* * *
73160 ATTTTAAGATTTTATATTTG
1 ATTTTAAAATTATATATTCG
73180 ATTTTAAAATTATATATTCG
1 ATTTTAAAATTATATATTCG
73200 ATT
1 ATT
73203 AAATTATTCG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.56
Consensus pattern (20 bp):
ATTTTAAAATTATATATTCG
Found at i:75037 original size:3 final size:3
Alignment explanation
Indices: 75031--75146 Score: 121
Period size: 3 Copynumber: 38.7 Consensus size: 3
75021 TAAAAAAATG
*
75031 TAA TAA TAA TAA TAA TAA TAA TTAA TAA TAA TAA TAA TAA TAG T-A
1 TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
75076 TTA TAA TTAA TAA TAA TAA TAA TAA T-A TTA TTA TTA TAA TTAA TAT
1 TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA
*
75122 TAA TAA TAA TAA T-A TAC TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
75147 TTTTTGTAGA
Statistics
Matches: 99, Mismatches: 8, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
2 5 0.05
3 85 0.86
4 9 0.09
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.41
Consensus pattern (3 bp):
TAA
Found at i:75090 original size:33 final size:32
Alignment explanation
Indices: 75031--75135 Score: 144
Period size: 33 Copynumber: 3.3 Consensus size: 32
75021 TAAAAAAATG
*
75031 TAATAATAATAATA-ATAATAATTAATAATAA
1 TAATAATAATAATATATTATAATTAATAATAA
*
75062 TAATAATAAT-A-GTATTATAATTAATAATAA
1 TAATAATAATAATATATTATAATTAATAATAA
* *
75092 TAATAATAATATTATTATTATAATTAATATTAA
1 TAATAATAATAATA-TATTATAATTAATAATAA
75125 TAATAATAATA
1 TAATAATAATA
75136 TACTAATAAT
Statistics
Matches: 65, Mismatches: 5, Indels: 6
0.86 0.07 0.08
Matches are distributed among these distances:
30 27 0.42
31 10 0.15
33 28 0.43
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.41
Consensus pattern (32 bp):
TAATAATAATAATATATTATAATTAATAATAA
Found at i:75893 original size:22 final size:22
Alignment explanation
Indices: 75865--75910 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
75855 AAATGTCGAC
75865 TTACCTAGAAAGAGACATTTAT
1 TTACCTAGAAAGAGACATTTAT
75887 TTACCTAGAAAGAGACATTTAT
1 TTACCTAGAAAGAGACATTTAT
75909 TT
1 TT
75911 CCATATAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (22 bp):
TTACCTAGAAAGAGACATTTAT
Found at i:76956 original size:46 final size:46
Alignment explanation
Indices: 76889--76978 Score: 162
Period size: 46 Copynumber: 2.0 Consensus size: 46
76879 TGCATGCATG
*
76889 CATGGCAGCAATAATGGCGTGTAATACTATCACGTGAATCTGTAGA
1 CATGGCAGCAATAATGGCGTGTAATACTACCACGTGAATCTGTAGA
*
76935 CATGGCAGCAATAATGGCGTGTAGTACTACCACGTGAATCTGTA
1 CATGGCAGCAATAATGGCGTGTAATACTACCACGTGAATCTGTA
76979 AGCATGACAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (46 bp):
CATGGCAGCAATAATGGCGTGTAATACTACCACGTGAATCTGTAGA
Found at i:77376 original size:44 final size:46
Alignment explanation
Indices: 77310--77407 Score: 128
Period size: 44 Copynumber: 2.2 Consensus size: 46
77300 TAATAATCGA
*
77310 TGTCATGCCTACAGATTAACGTGGAAGTA-T-CACGTCATTATTGC
1 TGTCATGCCTACAGATTAACGTGGAAGTATTACACGCCATTATTGC
* * * *
77354 TGTCATGCCTGCAGATTCACGTGGTAGTATTACACGCCATTATTGT
1 TGTCATGCCTACAGATTAACGTGGAAGTATTACACGCCATTATTGC
*
77400 TGCCATGC
1 TGTCATGC
77408 ACGCAGGGGG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
44 26 0.57
45 1 0.02
46 19 0.41
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.33
Consensus pattern (46 bp):
TGTCATGCCTACAGATTAACGTGGAAGTATTACACGCCATTATTGC
Found at i:78103 original size:5 final size:5
Alignment explanation
Indices: 78088--78136 Score: 62
Period size: 5 Copynumber: 9.8 Consensus size: 5
78078 GTCCGTCCGT
* * * *
78088 CTCGT CTCGG CACGG CACGG CACGG CTCGG CTCGG CTCGG CTCGG CTCG
1 CTCGG CTCGG CTCGG CTCGG CTCGG CTCGG CTCGG CTCGG CTCGG CTCG
78137 TGGTCGTGGT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 41 1.00
ACGTcount: A:0.06, C:0.41, G:0.37, T:0.16
Consensus pattern (5 bp):
CTCGG
Found at i:78145 original size:6 final size:6
Alignment explanation
Indices: 78134--78176 Score: 68
Period size: 6 Copynumber: 7.2 Consensus size: 6
78124 TCGGCTCGGC
* *
78134 TCGTGG TCGTGG TCGAGG TCGAGG TCGTGG TCGTGG TCGTGG T
1 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG T
78177 AATACGTGTC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.05, C:0.16, G:0.49, T:0.30
Consensus pattern (6 bp):
TCGTGG
Found at i:78476 original size:22 final size:22
Alignment explanation
Indices: 78451--78505 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
78441 TCAGGAGTTA
* *
78451 CAGGAGTTATTTGATTTAATTC
1 CAGGAGTTATATGATATAATTC
* * *
78473 CAGGGGTTACATGATATAATTT
1 CAGGAGTTATATGATATAATTC
*
78495 CGGGAGTTATA
1 CAGGAGTTATA
78506 ACAGCTGAAT
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.29, C:0.09, G:0.24, T:0.38
Consensus pattern (22 bp):
CAGGAGTTATATGATATAATTC
Found at i:84079 original size:5 final size:5
Alignment explanation
Indices: 84038--84081 Score: 52
Period size: 5 Copynumber: 8.8 Consensus size: 5
84028 GTCCGTCCGT
* * * *
84038 CTCGT CTCGG CACGG CACGG CACGG CTCGG CTCGG CTCGG CTCG
1 CTCGG CTCGG CTCGG CTCGG CTCGG CTCGG CTCGG CTCGG CTCG
84082 TGGTCGTGGT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 36 1.00
ACGTcount: A:0.07, C:0.41, G:0.36, T:0.16
Consensus pattern (5 bp):
CTCGG
Found at i:84090 original size:6 final size:6
Alignment explanation
Indices: 84079--84151 Score: 119
Period size: 6 Copynumber: 12.2 Consensus size: 6
84069 TCGGCTCGGC
* * *
84079 TCGTGG TCGTGG TCGTGG TCGTGG TCGAGG TCGAGG TCGAGG TCGTGG
1 TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG TCGTGG
84127 TCGTGG TCGTGG TCGTGG TCGTGG T
1 TCGTGG TCGTGG TCGTGG TCGTGG T
84152 AATACGTGTC
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 65 1.00
ACGTcount: A:0.04, C:0.16, G:0.49, T:0.30
Consensus pattern (6 bp):
TCGTGG
Found at i:84451 original size:22 final size:22
Alignment explanation
Indices: 84426--84480 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
84416 TCAGGAGTTA
* *
84426 CAGGAGTTATTTGATTTAATTC
1 CAGGAGTTATATGATATAATTC
* * *
84448 CAGGGGTTACATGATATAATTT
1 CAGGAGTTATATGATATAATTC
*
84470 CGGGAGTTATA
1 CAGGAGTTATA
84481 ACAGCTGAAT
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.29, C:0.09, G:0.24, T:0.38
Consensus pattern (22 bp):
CAGGAGTTATATGATATAATTC
Found at i:85916 original size:17 final size:17
Alignment explanation
Indices: 85894--85933 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
85884 GGTTGGTTCC
85894 GAATCTGAATCAGAAAG
1 GAATCTGAATCAGAAAG
85911 GAATCTGAATCAGAAAG
1 GAATCTGAATCAGAAAG
*
85928 GCATCT
1 GAATCT
85934 ATCTGAGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.20
Consensus pattern (17 bp):
GAATCTGAATCAGAAAG
Found at i:87956 original size:12 final size:12
Alignment explanation
Indices: 87939--87966 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
87929 CTATAGCATA
87939 TAAAATTTTGGG
1 TAAAATTTTGGG
87951 TAAAATTTTGGG
1 TAAAATTTTGGG
87963 TAAA
1 TAAA
87967 CTACACATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (12 bp):
TAAAATTTTGGG
Found at i:89198 original size:21 final size:22
Alignment explanation
Indices: 89159--89220 Score: 76
Period size: 21 Copynumber: 2.9 Consensus size: 22
89149 ACCGTCTAGT
*
89159 GTTCTTATTCTCTTGATTTAGG
1 GTTCTTATTTTCTTGATTTAGG
89181 GTTCTTATTTTC-TGATTTAGG
1 GTTCTTATTTTCTTGATTTAGG
89202 GTT-TTGATTTT-TTGGATTT
1 GTTCTT-ATTTTCTT-GATTT
89221 TGTATTCATA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
20 2 0.06
21 18 0.50
22 16 0.44
ACGTcount: A:0.13, C:0.08, G:0.19, T:0.60
Consensus pattern (22 bp):
GTTCTTATTTTCTTGATTTAGG
Found at i:91263 original size:16 final size:17
Alignment explanation
Indices: 91239--91273 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
91229 AAAAACCTTA
91239 TTTATTTATAAATATAT
1 TTTATTTATAAATATAT
*
91256 TTTATTATATATATATAT
1 TTTATT-TATAAATATAT
91274 ATATATTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TTTATTTATAAATATAT
Found at i:92475 original size:24 final size:24
Alignment explanation
Indices: 92448--92516 Score: 93
Period size: 24 Copynumber: 2.9 Consensus size: 24
92438 TATGATGCAA
* *
92448 TTATTTTGTTAAAGTTTGATGGCT
1 TTATTTTGTTAAAGTATGATGACT
*
92472 TTATTTTGTTAATGTATGATGACT
1 TTATTTTGTTAAAGTATGATGACT
* *
92496 TTATTTTATTCAAGTATGATG
1 TTATTTTGTTAAAGTATGATG
92517 CAATTATGGA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.25, C:0.04, G:0.17, T:0.54
Consensus pattern (24 bp):
TTATTTTGTTAAAGTATGATGACT
Found at i:92523 original size:24 final size:23
Alignment explanation
Indices: 92438--92523 Score: 77
Period size: 24 Copynumber: 3.6 Consensus size: 23
92428 AATGTAAAAA
92438 TATGATGCAATTATTTTGTTAAAG
1 TATGATGCAATTATTTTGTT-AAG
* *
92462 TTTGATGGC-TTTATTTTGTTAATG
1 TATGAT-GCAATTATTTTGTTAA-G
* *
92486 TATGATG-ACTTTATTTTATTCAAG
1 TATGATGCA-ATTATTTTGTT-AAG
92510 TATGATGCAATTAT
1 TATGATGCAATTAT
92524 GGACACATTC
Statistics
Matches: 51, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
23 3 0.06
24 43 0.84
25 5 0.10
ACGTcount: A:0.28, C:0.06, G:0.16, T:0.50
Consensus pattern (23 bp):
TATGATGCAATTATTTTGTTAAG
Found at i:100773 original size:15 final size:15
Alignment explanation
Indices: 100753--100783 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
100743 CAGCTCAACT
100753 TAGGCTACGGATGGA
1 TAGGCTACGGATGGA
*
100768 TAGGCTAGGGATGGA
1 TAGGCTACGGATGGA
100783 T
1 T
100784 TGAGGGGAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.10, G:0.42, T:0.23
Consensus pattern (15 bp):
TAGGCTACGGATGGA
Found at i:101315 original size:14 final size:13
Alignment explanation
Indices: 101298--101357 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
101288 AAAATGTGAG
101298 ATAAAAAAATAATA
1 ATAAAAAAA-AATA
*
101312 ATAATAAAAAATA
1 ATAAAAAAAAATA
*
101325 A-AAAATAAAATTAA
1 ATAAAA-AAAAAT-A
* *
101339 ATAAATAAAAATC
1 ATAAAAAAAAATA
101352 ATAAAA
1 ATAAAA
101358 CATAAAAAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 7
0.72 0.14 0.14
Matches are distributed among these distances:
12 3 0.08
13 15 0.42
14 15 0.42
15 3 0.08
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.22
Consensus pattern (13 bp):
ATAAAAAAAAATA
Found at i:101320 original size:17 final size:15
Alignment explanation
Indices: 101298--101367 Score: 56
Period size: 16 Copynumber: 4.6 Consensus size: 15
101288 AAAATGTGAG
101298 ATAAAAAAATAATAATA
1 ATAAAAAAATAA-AA-A
101315 AT-AAAAAATAAAAA
1 ATAAAAAAATAAAAA
*
101329 AT--AAAATTAAATAA
1 ATAAAAAAATAAA-AA
* *
101343 ATAAAAATCATAAAAC
1 ATAAAAA-AATAAAAA
101359 ATAAAAAAA
1 ATAAAAAAA
101368 AGACTTATTA
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
13 8 0.18
14 7 0.16
15 3 0.07
16 20 0.45
17 6 0.14
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (15 bp):
ATAAAAAAATAAAAA
Found at i:101331 original size:23 final size:23
Alignment explanation
Indices: 101301--101366 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 23
101291 ATGTGAGATA
101301 AAAAAATAATAATAATAAAAAAT
1 AAAAAATAATAATAATAAAAAAT
101324 AAAAAATAA-AAT--TAAATAAAT
1 AAAAAATAATAATAATAAA-AAAT
* *
101345 -AAAAATCATAAAACATAAAAAA
1 AAAAAATAATAATA-ATAAAAAA
101367 AAGACTTATT
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
20 11 0.31
21 6 0.17
22 3 0.08
23 12 0.33
24 4 0.11
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (23 bp):
AAAAAATAATAATAATAAAAAAT
Found at i:101350 original size:20 final size:20
Alignment explanation
Indices: 101298--101368 Score: 60
Period size: 20 Copynumber: 3.5 Consensus size: 20
101288 AAAATGTGAG
*
101298 ATAAAAAAATAATAATAATAA
1 ATAAATAAA-AATAATAATAA
101319 A-AAATAAAAAATAA-AATTAA
1 ATAAAT-AAAAATAATAA-TAA
*
101339 ATAAATAAAAATCATAA-AA
1 ATAAATAAAAATAATAATAA
101358 CATAAA-AAAAA
1 -ATAAATAAAAA
101369 GACTTATTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
19 9 0.21
20 24 0.56
21 10 0.23
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (20 bp):
ATAAATAAAAATAATAATAA
Found at i:101417 original size:36 final size:36
Alignment explanation
Indices: 101377--101509 Score: 87
Period size: 36 Copynumber: 3.6 Consensus size: 36
101367 AAGACTTATT
101377 AAAATAATAAATTAAAGAAAAGAAAAAATATAAAAG
1 AAAATAATAAATTAAAGAAAAGAAAAAATATAAAAG
*
101413 AAAATAA-ATAGTTAAAGAATAA-AAAATATATATATAAA-
1 AAAATAATA-AATTAAAGAA-AAGAAAA-A-ATATA-AAAG
* * *
101451 AAACA-AAT-AATCAAAGAGAGGAAAAAAATATCAAAAG
1 AAA-ATAATAAATTAAAGAAAAG-AAAAAATAT-AAAAG
* * *
101488 AACAATATTAAATAAAATAAAA
1 AA-AATAATAAATTAAAGAAAA
101510 AAGGTATGGA
Statistics
Matches: 73, Mismatches: 10, Indels: 25
0.68 0.09 0.23
Matches are distributed among these distances:
35 1 0.01
36 28 0.38
37 15 0.21
38 17 0.23
39 12 0.16
ACGTcount: A:0.71, C:0.03, G:0.08, T:0.19
Consensus pattern (36 bp):
AAAATAATAAATTAAAGAAAAGAAAAAATATAAAAG
Found at i:102711 original size:13 final size:13
Alignment explanation
Indices: 102668--102708 Score: 64
Period size: 13 Copynumber: 3.1 Consensus size: 13
102658 ATGAATAAGA
102668 AATAATAATAAAT
1 AATAATAATAAAT
*
102681 AATAGTAATAAAT
1 AATAATAATAAAT
102694 AATAATAAATAAAT
1 AATAAT-AATAAAT
102708 A
1 A
102709 TAAAAATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 17 0.68
14 8 0.32
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.29
Consensus pattern (13 bp):
AATAATAATAAAT
Found at i:102712 original size:10 final size:10
Alignment explanation
Indices: 102653--102705 Score: 61
Period size: 10 Copynumber: 4.9 Consensus size: 10
102643 TGGACAGAAA
102653 AATAAATGAAT
1 AATAAAT-AAT
*
102664 AAGAAATAAT
1 AATAAATAAT
102674 AATAAATAATAGT
1 AATAAAT-A-A-T
102687 AATAAATAAT
1 AATAAATAAT
102697 AATAAATAA
1 AATAAATAA
102706 ATATAAAAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
10 19 0.51
11 8 0.22
12 2 0.05
13 8 0.22
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (10 bp):
AATAAATAAT
Found at i:102801 original size:32 final size:30
Alignment explanation
Indices: 102740--102830 Score: 85
Period size: 32 Copynumber: 3.0 Consensus size: 30
102730 ATAATATAAT
* * *
102740 TTTTTAAAAATGTTTTTAAAAAAGCTATATCA
1 TTTTCAAAAATGTTTTTTAAAAA-TTATAT-A
102772 TTTTCAAAAATGTTTTTTTAAAAATTATATA
1 TTTTCAAAAATG-TTTTTTAAAAATTATATA
* * **
102803 ATTTCTAAAA-GAGTTTTAAAAATTATAT
1 TTTTCAAAAATGTTTTTTAAAAATTATAT
102831 TTATATAAGT
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 15 0.29
30 1 0.02
31 9 0.18
32 16 0.31
33 10 0.20
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.46
Consensus pattern (30 bp):
TTTTCAAAAATGTTTTTTAAAAATTATATA
Found at i:102878 original size:38 final size:37
Alignment explanation
Indices: 102795--103021 Score: 210
Period size: 36 Copynumber: 6.2 Consensus size: 37
102785 TTTTTTAAAA
*
102795 ATTATATAA--TTTCTAAAAGA-GTTTTAAAAATTATAT
1 ATTATATAAGTTTTC-AAAA-ATGTTTTAAAAACTATAT
102831 -TTATATAAGTTTTCAAAAATGTTTTCAAAAACTATAT
1 ATTATATAAGTTTTCAAAAATGTTTT-AAAAACTATAT
*
102868 ATTATATAAGTTTTCAAAAAATGATTTTAAAAA-T-CAT
1 ATTATATAAGTTTTC-AAAAATG-TTTTAAAAACTATAT
* *
102905 A-T-TAT-A-TTTTCTAAAATGTTTTAAAAATTATAT
1 ATTATATAAGTTTTCAAAAATGTTTTAAAAACTATAT
* *
102938 ATTATAT-AGTTTTCAAAAGTGTTTTTAAAACTATAT
1 ATTATATAAGTTTTCAAAAATGTTTTAAAAACTATAT
*
102974 ACTATATATA-TTTTC-AAAATGCTTTTTTAAAAAACTATAT
1 ATTATATA-AGTTTTCAAAAATG---TTTT-AAAAACTATAT
103014 ATTATATA
1 ATTATATA
103022 TGTATTTTCA
Statistics
Matches: 161, Mismatches: 12, Indels: 32
0.79 0.06 0.16
Matches are distributed among these distances:
31 9 0.06
32 7 0.04
33 8 0.05
34 2 0.01
35 16 0.10
36 44 0.27
37 22 0.14
38 16 0.10
39 16 0.10
40 21 0.13
ACGTcount: A:0.44, C:0.06, G:0.05, T:0.45
Consensus pattern (37 bp):
ATTATATAAGTTTTCAAAAATGTTTTAAAAACTATAT
Found at i:103007 original size:107 final size:105
Alignment explanation
Indices: 102765--103006 Score: 307
Period size: 107 Copynumber: 2.3 Consensus size: 105
102755 TTAAAAAAGC
102765 TATATCATTTTCAAAAATGTTTTTTTAAAAATTATATAATTTCTAAAAGAGTTTTAAAAATTATA
1 TATAT-ATTTTCAAAAATG-TTTTTTAAAAATTATATAATTTCTAAAAGAGTTTTAAAAATTATA
*
102830 TTTATATAAGTTTTCAAAAATGTTTTCAAAAACTATATATTA
64 TTTATATAAGTTTTCAAAAATGTTTTCAAAAACTATATACTA
* * *
102872 TATA-AGTTTTCAAAAAATG-ATTTTAAAAATCATATTATATTTTCTAAAA-TGTTTTAAAAATT
1 TATATA-TTTTC-AAAAATGTTTTTTAAAAAT--TA-TATAATTTCTAAAAGAGTTTTAAAAATT
* *
102934 ATATATTATAT-AGTTTTCAAAAGTGTTTT-TAAAACTATATACTA
61 ATAT-TTATATAAGTTTTCAAAAATGTTTTCAAAAACTATATACTA
102978 TATATATTTTC-AAAATGCTTTTTTAAAAA
1 TATATATTTTCAAAAATG-TTTTTTAAAAA
103007 ACTATATATT
Statistics
Matches: 119, Mismatches: 7, Indels: 19
0.82 0.05 0.13
Matches are distributed among these distances:
104 6 0.05
105 11 0.09
106 36 0.30
107 47 0.39
108 19 0.16
ACGTcount: A:0.43, C:0.06, G:0.05, T:0.46
Consensus pattern (105 bp):
TATATATTTTCAAAAATGTTTTTTAAAAATTATATAATTTCTAAAAGAGTTTTAAAAATTATATT
TATATAAGTTTTCAAAAATGTTTTCAAAAACTATATACTA
Found at i:103022 original size:38 final size:36
Alignment explanation
Indices: 102816--103022 Score: 166
Period size: 38 Copynumber: 5.7 Consensus size: 36
102806 TCTAAAAGAG
*
102816 TTTTAAAAATTATAT-TTATATAAGTTTTCAAAAATG-T
1 TTTTAAAAACTATATATTATAT-A-TTTTC-AAAATGTT
* *
102853 TTTCAAAAACTATATATTATATAAGTTTTCAAAAAATG-A
1 TTTTAAAAACTATATATTATAT-A-TTTTC--AAAATGTT
*
102892 TTTTAAAAA-T-CATA-T-TATATTTTCTAAAATG--
1 TTTTAAAAACTATATATTATATATTTTC-AAAATGTT
*
102923 TTTTAAAAATTATATATTATATAGTTTTCAAAA-GTGT
1 TTTTAAAAACTATATATTATATA-TTTTCAAAATGT-T
102960 TTTT-AAAACTATATACTATATATATTTTCAAAATGCTT
1 TTTTAAAAACTATATA-T-TATATATTTTCAAAATG-TT
102998 TTTTAAAAAACTATATATTATATAT
1 TTTT-AAAAACTATATATTATATAT
103023 GTATTTTCAA
Statistics
Matches: 146, Mismatches: 8, Indels: 31
0.79 0.04 0.17
Matches are distributed among these distances:
31 9 0.06
32 7 0.05
33 8 0.05
34 3 0.02
35 11 0.08
36 16 0.11
37 30 0.21
38 34 0.23
39 17 0.12
40 11 0.08
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.46
Consensus pattern (36 bp):
TTTTAAAAACTATATATTATATATTTTCAAAATGTT
Found at i:103053 original size:2 final size:2
Alignment explanation
Indices: 103046--103110 Score: 112
Period size: 2 Copynumber: 32.5 Consensus size: 2
103036 CGTTTGCGAA
*
103046 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT CT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
103088 TT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT A
103111 ATGAAAGAGG
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 59 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Done.