genome.fa.s9041.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009041.1 Hibiscus syriacus cultivar Beakdansim tig00112450_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73810

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2106--2130	13	1.9	13	100	0	50	52	8	8	32	1.60
2539--2620	23	3.6	22	78	8	94	24	24	26	24	2.00
4910--4978	20	3.3	20	80	8	68	72	1	5	20	1.13
5539--5727	63	2.8	66	83	11	199	56	12	2	28	1.48
5609--5754	74	2.0	76	90	6	237	56	10	3	29	1.49
13068--13115	21	2.3	20	89	3	69	77	0	4	18	0.93
13606--13664	21	2.9	21	78	9	61	52	15	1	30	1.52
18477--18527	19	2.6	20	81	3	59	41	3	17	37	1.68
22987--23021	18	1.9	17	88	11	52	40	11	8	40	1.72
25211--25792	324	1.8	324	85	3	807	46	7	13	32	1.71
25898--25997	31	3.2	31	73	12	105	31	4	22	43	1.71
26261--26629	20	18.5	20	84	5	442	34	26	18	20	1.96
27310--27356	24	2.0	24	87	8	69	25	14	21	38	1.92
27531--27555	12	2.1	12	100	0	50	72	0	28	0	0.86
29830--30084	19	14.4	19	80	16	316	47	18	20	14	1.83
29830--30084	33	7.2	34	86	9	295	47	18	20	14	1.83
29897--30106	52	3.9	52	91	6	339	46	17	20	15	1.84
29830--30084	90	2.9	88	81	15	303	47	18	20	14	1.83
30113--30213	19	5.6	19	85	12	142	14	23	17	43	1.87
30320--30356	14	2.6	14	91	0	65	45	21	0	32	1.52
32315--32371	14	3.7	14	77	20	60	45	22	21	10	1.82
32296--32388	33	2.8	33	95	0	168	47	21	20	10	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32259--32393	19	7.6	19	76	16	128	45	23	19	11	1.82
32389--32517	19	7.3	18	73	20	112	8	17	27	46	1.77
32389--32480	33	2.8	33	93	3	150	7	18	28	45	1.76
32649--33019	92	4.0	93	97	1	703	46	18	12	22	1.83
34726--34815	14	5.7	14	74	23	81	42	23	25	8	1.83
34718--34832	33	3.5	33	95	0	212	45	20	24	9	1.81
34725--34837	19	6.8	18	72	23	88	43	22	24	9	1.83
34849--34903	14	3.6	14	73	21	56	9	25	23	41	1.83
34833--34903	33	2.2	33	94	0	124	8	22	25	43	1.81
34844--34925	33	2.5	33	89	2	119	9	25	21	42	1.84
34856--34944	20	4.8	20	72	19	75	12	24	19	43	1.85
35024--35094	33	2.2	33	92	0	115	47	18	22	11	1.80
35276--35330	22	2.5	22	81	0	74	20	16	40	23	1.91
35476--35668	20	9.6	20	82	5	219	19	19	25	35	1.95
35476--35668	60	3.2	60	83	0	251	19	19	25	35	1.95
35724--35775	20	2.6	20	96	0	95	21	13	26	38	1.90
36829--36925	42	2.3	41	79	15	99	49	4	1	45	1.28
37002--37099	39	2.5	39	83	0	106	46	10	5	37	1.60
37074--37134	26	2.2	29	82	8	74	42	4	3	49	1.40
38160--39036	139	6.3	138	83	2	1022	45	13	13	27	1.81
38160--39058	417	2.2	416	83	3	1128	44	13	13	28	1.81
41243--41527	117	2.5	114	77	7	292	24	18	14	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42211--42259	23	2.1	23	100	0	98	18	0	38	42	1.50
47071--47106	16	2.2	16	100	0	72	41	5	27	25	1.77
50285--50377	44	2.1	43	86	2	123	27	24	21	25	1.99
55442--55470	14	2.1	14	93	6	51	41	3	6	48	1.47
56603--56665	29	2.2	29	82	0	72	55	6	6	31	1.50
57220--57259	19	2.1	19	86	13	55	72	2	7	17	1.19
57353--57392	2	20.0	2	94	0	71	47	0	2	50	1.14
58608--58792	84	2.2	82	79	7	201	26	17	18	37	1.93
58766--58960	85	2.3	85	84	0	246	29	20	16	32	1.95
63050--63209	65	2.5	65	85	7	211	27	17	24	30	1.97
63050--63251	65	3.1	64	77	14	209	26	17	24	31	1.97
64317--64360	21	2.1	21	82	0	52	36	15	38	9	1.80
65903--65983	23	3.6	22	75	8	83	25	23	24	25	2.00
65906--66002	44	2.2	44	83	7	117	26	20	24	27	1.99
71806--71931	64	2.0	65	89	7	195	27	18	25	28	1.98

Tables:   1

The End!