Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009043.1 Hibiscus syriacus cultivar Beakdansim tig00112453_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 500226
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 4
Found at i:2512 original size:20 final size:20
Alignment explanation
Indices: 2484--2522 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
2474 AATCAGTCAT
* *
2484 GTAGTATCGATACTAAAGGA
1 GTAGCATCGATACCAAAGGA
2504 GTAGCATCGATACCAAAGG
1 GTAGCATCGATACCAAAGG
2523 TATCAATACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.15, G:0.26, T:0.21
Consensus pattern (20 bp):
GTAGCATCGATACCAAAGGA
Found at i:3131 original size:45 final size:44
Alignment explanation
Indices: 3081--3224 Score: 141
Period size: 45 Copynumber: 3.2 Consensus size: 44
3071 TATGATTACC
* *
3081 TGAAAATATGATATAAACCATGTGATACTAAACTATGTGAATATA
1 TGAAAATGTGATATAAACTATGTGATACTAAACTATGTGAATA-A
* *** * *
3126 TGAAAAGGTGATATAAACTATGTGATAC-GGTCTATGTGACTACG
1 TGAAAATGTGATATAAACTATGTGATACTAAACTATGTGAATA-A
*
3170 TGAAAATGTGATATAATA-TATGTGATACGTAAA-GATGTGAATAA
1 TGAAAATGTGATATAA-ACTATGTGATAC-TAAACTATGTGAATAA
3214 TTGAAAATGTG
1 -TGAAAATGTG
3225 TAAACAGTAA
Statistics
Matches: 79, Mismatches: 16, Indels: 8
0.77 0.16 0.08
Matches are distributed among these distances:
44 35 0.44
45 44 0.56
ACGTcount: A:0.42, C:0.07, G:0.20, T:0.31
Consensus pattern (44 bp):
TGAAAATGTGATATAAACTATGTGATACTAAACTATGTGAATAA
Found at i:3208 original size:29 final size:29
Alignment explanation
Indices: 3158--3214 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
3148 TGATACGGTC
3158 TATGTGACTACGTGAAAATGTGATATAATA
1 TATGTGACTACGTGAAAATGTGA-ATAATA
3188 TATGTGA-TACGT-AAAGATGTGAATAAT
1 TATGTGACTACGTGAAA-ATGTGAATAAT
3215 TGAAAATGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
28 8 0.31
29 11 0.42
30 7 0.27
ACGTcount: A:0.40, C:0.05, G:0.21, T:0.33
Consensus pattern (29 bp):
TATGTGACTACGTGAAAATGTGAATAATA
Found at i:3343 original size:22 final size:22
Alignment explanation
Indices: 3311--3370 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
3301 CGGTCCTTTA
3311 GGACAATTCTATGTGGTCTTTCAG
1 GGAC-ATTCTATGTGGTCTTTC-G
** *
3335 GGACA-TCTATGTTATTTTTCG
1 GGACATTCTATGTGGTCTTTCG
3356 GGACATTCTATGTGG
1 GGACATTCTATGTGG
3371 AAATTCGGTG
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 6 0.20
22 19 0.63
23 1 0.03
24 4 0.13
ACGTcount: A:0.20, C:0.15, G:0.25, T:0.40
Consensus pattern (22 bp):
GGACATTCTATGTGGTCTTTCG
Found at i:5931 original size:21 final size:21
Alignment explanation
Indices: 5883--5934 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
5873 GGTGAAGATG
* * *
5883 TAGCACATCTCTCTAAAGGGA
1 TAGCACTTCCCTCTAAAGAGA
5904 TAGCACTTCCCTCTAAAGAGA
1 TAGCACTTCCCTCTAAAGAGA
5925 TAGCACTTCC
1 TAGCACTTCC
5935 AAATCTTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (21 bp):
TAGCACTTCCCTCTAAAGAGA
Found at i:18422 original size:12 final size:12
Alignment explanation
Indices: 18405--18434 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
18395 TAGGGCCATT
18405 AGTTTTACATCA
1 AGTTTTACATCA
*
18417 AGTTTTACATTA
1 AGTTTTACATCA
18429 AGTTTT
1 AGTTTT
18435 CTTTATTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.50
Consensus pattern (12 bp):
AGTTTTACATCA
Found at i:24438 original size:12 final size:12
Alignment explanation
Indices: 24421--24450 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
24411 TAGGGCCATT
24421 AGTTTTACATCA
1 AGTTTTACATCA
*
24433 AGTTTTACATTA
1 AGTTTTACATCA
24445 AGTTTT
1 AGTTTT
24451 CTTTATTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.50
Consensus pattern (12 bp):
AGTTTTACATCA
Found at i:32969 original size:21 final size:21
Alignment explanation
Indices: 32944--32987 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
32934 AAAAACTGAG
32944 GCAATAAATCAAA-GATATGAA
1 GCAATAAATCAAAGGA-ATGAA
**
32965 GCAATGGATCAAAGGAATGAA
1 GCAATAAATCAAAGGAATGAA
32986 GC
1 GC
32988 TTTGATCCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 18 0.90
22 2 0.10
ACGTcount: A:0.50, C:0.11, G:0.23, T:0.16
Consensus pattern (21 bp):
GCAATAAATCAAAGGAATGAA
Found at i:35111 original size:19 final size:21
Alignment explanation
Indices: 35083--35136 Score: 67
Period size: 19 Copynumber: 2.6 Consensus size: 21
35073 TGCAGAAATG
*
35083 GTATCGGTACCATA-ATAG-A
1 GTATCAGTACCATAGATAGTA
35102 GTATCAGTACCATAGTATAGTA
1 GTATCAGTACCATAG-ATAGTA
*
35124 GTATCAATACCAT
1 GTATCAGTACCAT
35137 GGTAGGGGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 13 0.43
21 4 0.13
22 13 0.43
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.30
Consensus pattern (21 bp):
GTATCAGTACCATAGATAGTA
Found at i:35578 original size:55 final size:55
Alignment explanation
Indices: 35519--35912 Score: 569
Period size: 55 Copynumber: 7.2 Consensus size: 55
35509 TAATTTGTTT
* * *
35519 ATGAATTTCCGTATGGGCACTTTATGTGTAAACCTAAGAAATTTATACTTAGTGG
1 ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
*
35574 ATGAATTTTCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
1 ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
* * *
35629 ATGGATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAAGTCATATTAAGTGG
1 ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
* *
35684 ATGAATTTCTGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACCAAGTGG
1 ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
**
35739 ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATA--ATTTGG
1 ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
* *
35792 TTATGAATTTTCGTATGGGTACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
1 --ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
* * * * **
35849 ATGAATTTCCGTATGGGCACTTTGTGTGCAAAAC-TAAGAAATTCAAAATAAGTTT
1 ATGAATTTCCGTATGGGCACTTTATGTG-TAAACTTAAGAAATTCATACTAAGTGG
35904 ATGAATTTC
1 ATGAATTTC
35913 TATATTGATA
Statistics
Matches: 306, Mismatches: 28, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
53 4 0.01
55 294 0.96
56 4 0.01
57 4 0.01
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.36
Consensus pattern (55 bp):
ATGAATTTCCGTATGGGCACTTTATGTGTAAACTTAAGAAATTCATACTAAGTGG
Found at i:40665 original size:13 final size:13
Alignment explanation
Indices: 40647--40674 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
40637 AGACACCTAG
40647 TGTTATAGTATCA
1 TGTTATAGTATCA
40660 TGTTATAGTATCA
1 TGTTATAGTATCA
40673 TG
1 TG
40675 GAACAAACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.07, G:0.18, T:0.46
Consensus pattern (13 bp):
TGTTATAGTATCA
Found at i:47978 original size:22 final size:22
Alignment explanation
Indices: 47953--48108 Score: 54
Period size: 22 Copynumber: 6.6 Consensus size: 22
47943 AAAGTTTTAG
47953 TATAAAGTATATATACATATAA
1 TATAAAGTATATATACATATAA
*
47975 TAT--A-TATATATAAAGTATAA
1 TATAAAGTATATATACA-TATAA
*
47995 TTATAAAGACTAAAGTATATAAGCAAATAA
1 -TATAAAG--T--A-TATAT-A-CATATAA
* *
48025 TATAAAGTATATA-AGTATAAAA
1 TATAAAGTATATATA-CATATAA
* *
48047 TATAAAATATAT-TA-GTATTAAA
1 TATAAAGTATATATACATA-T-AA
*
48069 TATGAAGTATATATACGTATATAATAA
1 TATAAAGTATATATAC----AT-ATAA
48096 TATAAAGTATATA
1 TATAAAGTATATA
48109 AGTATTATAT
Statistics
Matches: 99, Mismatches: 13, Indels: 39
0.66 0.09 0.26
Matches are distributed among these distances:
19 9 0.09
20 8 0.08
21 3 0.03
22 33 0.33
23 3 0.03
24 4 0.04
25 1 0.01
26 1 0.01
27 15 0.15
28 3 0.03
29 13 0.13
30 5 0.05
31 1 0.01
ACGTcount: A:0.54, C:0.03, G:0.08, T:0.35
Consensus pattern (22 bp):
TATAAAGTATATATACATATAA
Found at i:48113 original size:49 final size:48
Alignment explanation
Indices: 47973--48190 Score: 164
Period size: 49 Copynumber: 4.5 Consensus size: 48
47963 ATATACATAT
* * * * *
47973 AATATATA-TATATAAAGTATAATTATAAAGACTAAAGTATATAAGCA-AA
1 AATATAAAGTATATAAAGTAT-ATAAT-AATA-TAAAGTATATAAGTATTA
* *
48022 TAATATAAAGTATAT-AAG--TATAA-AATATAAAATATATTAGTATTA
1 -AATATAAAGTATATAAAGTATATAATAATATAAAGTATATAAGTATTA
* *
48067 AATATGAAGTATATATACGTATATAATAATATAAAGTATATAAGTATTA
1 AATATAAAGTATATA-AAGTATATAATAATATAAAGTATATAAGTATTA
* * * *
48116 TATATAAATTATATAAAGTATAATTATAAAGACTAAAGTATATAAGTA-TA
1 AATATAAAGTATATAAAGTAT-ATAAT-AATA-TAAAGTATATAAGTATTA
* *
48166 TAATATAAAGCAT-TTAAGTATATAA
1 -AATATAAAGTATATAAAGTATATAA
48191 AGTATAAGTA
Statistics
Matches: 135, Mismatches: 22, Indels: 23
0.75 0.12 0.13
Matches are distributed among these distances:
44 25 0.19
45 4 0.03
46 2 0.01
47 3 0.02
48 11 0.08
49 39 0.29
50 22 0.16
51 29 0.21
ACGTcount: A:0.54, C:0.02, G:0.08, T:0.35
Consensus pattern (48 bp):
AATATAAAGTATATAAAGTATATAATAATATAAAGTATATAAGTATTA
Found at i:48123 original size:22 final size:22
Alignment explanation
Indices: 48005--48732 Score: 158
Period size: 22 Copynumber: 34.5 Consensus size: 22
47995 TTATAAAGAC
* *
48005 TAAAGTATATAAGCA-AATAATA
1 TAAAGTATATAAGTATTAT-ATA
* *
48027 TAAAGTATATAAGTATAAAATA
1 TAAAGTATATAAGTATTATATA
* * *
48049 TAAAATATATTAGTATTAAATA
1 TAAAGTATATAAGTATTATATA
*
48071 TGAAGTATATATACGTATATAATAATA
1 TAAAGTATATA-A-GTAT-T-AT-ATA
48098 TAAAGTATATAAGTATTATATA
1 TAAAGTATATAAGTATTATATA
* *
48120 TAAATTATATAAAGTATAAT-TA
1 TAAAGTATAT-AAGTATTATATA
48142 TAAAG-ACTA-AAGTA-TATAAGTA
1 TAAAGTA-TATAAGTATTAT-A-TA
*
48164 TATAA-TATA-AAGCATTTAAGTATA
1 TA-AAGTATATAAGTA-TT-A-TATA
*
48188 TAAAG--TATAAGTA-TGTATA
1 TAAAGTATATAAGTATTATATA
* *
48207 TAAACTATAT-AGT-TTATATT
1 TAAAGTATATAAGTATTATATA
* *
48227 TATATTACTAT-A-TATTATATA
1 TAAAGTA-TATAAGTATTATATA
* * *
48248 TAAATTATAT-A-TATTATGTG
1 TAAAGTATATAAGTATTATATA
* ** *
48268 TAAACTATAT-A-TACCATGTA
1 TAAAGTATATAAGTATTATATA
* *
48288 TAAACTATA-GAGT-TTATATA
1 TAAAGTATATAAGTATTATATA
** * * *
48308 TGCACTAT-T--GAACTATATA
1 TAAAGTATATAAGTATTATATA
* *
48327 TAAACTATATAGGTTATTA-ATA
1 TAAAGTATATAAG-TATTATATA
*
48349 TAAATTATAT-AGT-TTATATA
1 TAAAGTATATAAGTATTATATA
* * * *
48369 TAAATTATATATGAATTATATT
1 TAAAGTATATAAGTATTATATA
* *
48391 TAAA-TATATACAG-CTTATATT
1 TAAAGTATATA-AGTATTATATA
* * *
48412 TATA-TAT-TATGTATAAT-TA
1 TAAAGTATATAAGTATTATATA
*
48431 TAAATTATAT-AGT-TTATATA
1 TAAAGTATATAAGTATTATATA
* * * *
48451 TAAATTATATATGAATTATATT
1 TAAAGTATATAAGTATTATATA
* *
48473 TAAA-TATATACAG-CTTATATT
1 TAAAGTATATA-AGTATTATATA
* * *
48494 TATA-TAT-TATGTATAAT-TA
1 TAAAGTATATAAGTATTATATA
*
48513 TAAATTATAT-A-TA-TATATA
1 TAAAGTATATAAGTATTATATA
*
48532 TATA-TATA-AAGT-TT-TAGTA
1 TAAAGTATATAAGTATTATA-TA
*
48551 TAAAGTATATATA-TAATAATATA
1 TAAAGTATATA-AGT-ATTATATA
48574 TAAAG--TATAAGTATATATATA
1 TAAAGTATATAAGTAT-TATATA
* *
48595 TATATATATATATAAAGTATAAT-TA
1 TA-A-A-GTATAT-AAGTATTATATA
* *
48620 TAAAGAATA-AAGTA-TATAAGCA
1 TAAAGTATATAAGTATTAT-A-TA
*
48642 TATAA-TATA-AAGTA-TATATC
1 TA-AAGTATATAAGTATTATATA
48662 T---GTATATAA-TA-TATATA
1 TAAAGTATATAAGTATTATATA
** * * *
48679 T-GTGTGTGT-A-TATAATAATA
1 TAAAGTATATAAGTATTAT-ATA
*
48699 TAAAGTATATAAGTATTAAATA
1 TAAAGTATATAAGTATTATATA
48721 TAAAGTATATAA
1 TAAAGTATATAA
48733 AGTAAATTAT
Statistics
Matches: 536, Mismatches: 92, Indels: 156
0.68 0.12 0.20
Matches are distributed among these distances:
17 12 0.02
18 15 0.03
19 60 0.11
20 127 0.24
21 84 0.16
22 146 0.27
23 41 0.08
24 13 0.02
25 11 0.02
26 8 0.01
27 19 0.04
ACGTcount: A:0.48, C:0.03, G:0.08, T:0.41
Consensus pattern (22 bp):
TAAAGTATATAAGTATTATATA
Found at i:48185 original size:30 final size:29
Alignment explanation
Indices: 48120--48197 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 29
48110 GTATTATATA
* *
48120 TAAATTATATAAAGTATAATTATAAAGAC
1 TAAAGTATATAAAGTATAAATATAAAGAC
*
48149 TAAAGTATAT-AAGTATATAATATAAAGCAT
1 TAAAGTATATAAAGTATA-AATATAAAG-AC
*
48179 TTAAGTATATAAAGTATAA
1 TAAAGTATATAAAGTATAA
48198 GTATGTATAT
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
28 7 0.17
29 17 0.40
30 11 0.26
31 7 0.17
ACGTcount: A:0.54, C:0.03, G:0.09, T:0.35
Consensus pattern (29 bp):
TAAAGTATATAAAGTATAAATATAAAGAC
Found at i:48370 original size:11 final size:11
Alignment explanation
Indices: 48342--48615 Score: 96
Period size: 11 Copynumber: 25.5 Consensus size: 11
48332 TATATAGGTT
48342 ATTA-ATATAA
1 ATTATATATAA
48352 ATTATATAGT--
1 ATTATATA-TAA
48362 -TTATATATAA
1 ATTATATATAA
*
48372 ATTATATATGA
1 ATTATATATAA
*
48383 ATTATATTTAA
1 ATTATATATAA
* *
48394 A-TATATACAG
1 ATTATATATAA
* * *
48404 CTTATATTTAT
1 ATTATATATAA
**
48415 A-TAT-TATGT
1 ATTATATATAA
*
48424 ATAAT-TATAA
1 ATTATATATAA
48434 ATTATATAGT--
1 ATTATATA-TAA
48444 -TTATATATAA
1 ATTATATATAA
*
48454 ATTATATATGA
1 ATTATATATAA
*
48465 ATTATATTTAA
1 ATTATATATAA
* *
48476 A-TATATACAG
1 ATTATATATAA
* *
48486 CTTATATTTATAT
1 ATTATA--TATAA
*
48499 ATTATGTAT-A
1 ATTATATATAA
* *
48509 ATTATAAAT-T
1 ATTATATATAA
*
48519 A-TATATATAT
1 ATTATATATAA
48529 ATATATATATAA
1 AT-TATATATAA
*
48541 AGTTTTAGTATAA
1 A-TTATA-TATAA
*
48554 AGTATATATATA
1 ATTATATATA-A
*
48566 ATAATATATAA
1 ATTATATATAA
* *
48577 AGTATA-AGTAT
1 ATTATATA-TAA
*
48588 A-TATATATAT
1 ATTATATATAA
48598 ATATATATATAA
1 AT-TATATATAA
*
48610 AGTATA
1 ATTATA
48616 ATTATAAAGA
Statistics
Matches: 195, Mismatches: 44, Indels: 49
0.68 0.15 0.17
Matches are distributed among these distances:
8 2 0.01
9 24 0.12
10 47 0.24
11 73 0.37
12 35 0.18
13 14 0.07
ACGTcount: A:0.47, C:0.01, G:0.05, T:0.46
Consensus pattern (11 bp):
ATTATATATAA
Found at i:48416 original size:6 final size:7
Alignment explanation
Indices: 48405--48538 Score: 55
Period size: 7 Copynumber: 18.1 Consensus size: 7
48395 TATATACAGC
48405 TTATAT-
1 TTATATA
48411 TTATATA
1 TTATATA
48418 TTATGTATAA
1 TTA--TAT-A
*
48428 TTATAAA
1 TTATATA
48435 TTATATA
1 TTATATA
48442 GTT-TATA
1 -TTATATA
*
48449 -TATAAA
1 TTATATA
48455 TTATATA
1 TTATATA
*
48462 TGAATTATA
1 T-TA-TATA
*
48471 TT-TAAA
1 TTATATA
*
48477 TATATACA
1 T-TATATA
48485 GCTTATAT-
1 --TTATATA
48493 TTATATA
1 TTATATA
48500 TTATGTATAA
1 TTA--TAT-A
*
48510 TTATAAA
1 TTATATA
48517 TTATATA
1 TTATATA
48524 -TATATA
1 TTATATA
48530 TATATATA
1 T-TATATA
48538 T
1 T
48539 AAAGTTTTAG
Statistics
Matches: 98, Mismatches: 11, Indels: 36
0.68 0.08 0.25
Matches are distributed among these distances:
5 1 0.01
6 25 0.26
7 31 0.32
8 17 0.17
9 15 0.15
10 9 0.09
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (7 bp):
TTATATA
Found at i:48426 original size:17 final size:16
Alignment explanation
Indices: 48405--48534 Score: 65
Period size: 17 Copynumber: 7.9 Consensus size: 16
48395 TATATACAGC
48405 TTATATTTATATATTA
1 TTATATTTATATATTA
* *
48421 TGTATAATTATAAATTA
1 T-TATATTTATATATTA
48438 -TATAGTTTATATA-TA
1 TTATA-TTTATATATTA
*
48453 --A-A-TTATATATGAA
1 TTATATTTATATAT-TA
*
48466 TTATATTTAAATATATACA
1 TTATATTT--ATATAT-TA
48485 GCTTATATTTATATATTA
1 --TTATATTTATATATTA
* *
48503 TGTATAATTATAAATTA
1 T-TATATTTATATATTA
*
48520 TATATATATATATAT
1 T-TATATTTATATAT
48535 ATATAAAGTT
Statistics
Matches: 87, Mismatches: 14, Indels: 25
0.69 0.11 0.20
Matches are distributed among these distances:
11 7 0.08
13 2 0.02
14 1 0.01
15 7 0.08
16 9 0.10
17 39 0.45
18 1 0.01
19 13 0.15
21 8 0.09
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.51
Consensus pattern (16 bp):
TTATATTTATATATTA
Found at i:48440 original size:41 final size:41
Alignment explanation
Indices: 48391--48523 Score: 159
Period size: 41 Copynumber: 3.3 Consensus size: 41
48381 GAATTATATT
48391 TAAA-TATATACAGCTTATATTTATATATTATGTATAATTA
1 TAAATTATATACAGCTTATATTTATATATTATGTATAATTA
* * *
48431 TAAATTATAT--AG-TT-TATATATAAATTATATATGAATTA
1 TAAATTATATACAGCTTATATTTATATATTATGTAT-AATTA
*
48469 TATTTAAATATATACAGCTTATATTTATATATTATGTATAATTA
1 TA---AATTATATACAGCTTATATTTATATATTATGTATAATTA
48513 TAAATTATATA
1 TAAATTATATA
48524 TATATATATA
Statistics
Matches: 76, Mismatches: 8, Indels: 17
0.75 0.08 0.17
Matches are distributed among these distances:
37 15 0.20
38 9 0.12
39 2 0.03
40 4 0.05
41 20 0.26
43 2 0.03
44 9 0.12
45 15 0.20
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (41 bp):
TAAATTATATACAGCTTATATTTATATATTATGTATAATTA
Found at i:48440 original size:82 final size:82
Alignment explanation
Indices: 48347--48533 Score: 358
Period size: 82 Copynumber: 2.3 Consensus size: 82
48337 AGGTTATTAA
48347 TATAAATTATATAGTTTATATATAAATTATATATGAATTATATTTAAATATATACAGCTTATATT
1 TATAAATTATATAGTTTATATATAAATTATATATGAATTATATTTAAATATATACAGCTTATATT
48412 TATATATTATGTATAAT
66 TATATATTATGTATAAT
48429 TATAAATTATATAGTTTATATATAAATTATATATGAATTATATTTAAATATATACAGCTTATATT
1 TATAAATTATATAGTTTATATATAAATTATATATGAATTATATTTAAATATATACAGCTTATATT
48494 TATATATTATGTATAAT
66 TATATATTATGTATAAT
*
48511 TATAAATTATATA-TATATATATA
1 TATAAATTATATAGTTTATATATA
48534 TATATAAAGT
Statistics
Matches: 104, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
81 9 0.09
82 95 0.91
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (82 bp):
TATAAATTATATAGTTTATATATAAATTATATATGAATTATATTTAAATATATACAGCTTATATT
TATATATTATGTATAAT
Found at i:48490 original size:21 final size:20
Alignment explanation
Indices: 48384--48500 Score: 80
Period size: 21 Copynumber: 5.7 Consensus size: 20
48374 TATATATGAA
48384 TTATATTTAAATATATACAGC
1 TTATATTTAAATATATA-AGC
* *
48405 TTATATTTATATAT-TATG-
1 TTATATTTAAATATATAAGC
*
48423 -TATAATTATAAAT-TATATAGT
1 TTAT-ATT-TAAATATATA-AGC
* * *
48444 TTATATATAAATTATATATGAA
1 TTATATTTAAA-TATATAAG-C
48466 TTATATTTAAATATATACAGC
1 TTATATTTAAATATATA-AGC
*
48487 TTATATTTATATAT
1 TTATATTTAAATAT
48501 TATGTATAAT
Statistics
Matches: 75, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
17 3 0.04
18 4 0.05
19 7 0.09
20 7 0.09
21 36 0.48
22 18 0.24
ACGTcount: A:0.43, C:0.03, G:0.04, T:0.50
Consensus pattern (20 bp):
TTATATTTAAATATATAAGC
Found at i:48499 original size:2 final size:2
Alignment explanation
Indices: 48488--49469 Score: 92
Period size: 2 Copynumber: 494.0 Consensus size: 2
48478 ATATACAGCT
* * *
48488 TA TA TT TA TA TA T- TA TG TA TA -A T- TA TA AA T- TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
48526 TA TA TA TA TA TA TA AA GT- TT TA GTA TA AA GTA TA TA TA TA -A
1 TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA -TA TA TA TA TA TA
*
48567 TA -A TA TA TA AA GTA TA -A GTA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
48609 AA GTA TA -A T- TA TA AA GA -A TA AA GTA TA TA -A GCA TA TA -A
1 TA -TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA -TA TA TA TA
* * * * * * *
48647 TA TA AA GTA TA TA TC TG TA TA TA -A TA TA TA TA TG TG TG TG TA
1 TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
48689 TA TA -A TA -A TA TA AA GTA TA TA -A GTA T- TA AA TA TA AA GTA
1 TA TA TA TA TA TA TA TA -TA TA TA TA -TA TA TA TA TA TA TA -TA
* * * * *
48728 TA TA AA GTA AA T- TA TA AA GA CTA AA GTA TA TA -A GTA TA TA TA
1 TA TA TA -TA TA TA TA TA TA TA -TA TA -TA TA TA TA -TA TA TA TA
* *
48770 TA TA T- TA -A TA CTA -A TA TA CT- TA TA TT TA -A TA CA TA TA T-
1 TA TA TA TA TA TA -TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA
* * * *
48808 TT TA TA T- TA TA TA CT- TA TA TA CTT TA TA TT TA -A TA TT TA TA
1 TA TA TA TA TA TA TA -TA TA TA TA -TA TA TA TA TA TA TA TA TA TA
* * *
48849 TA CTT TA TA T- TA TA TA CT- TA TA TA CTT TT TA T- TA T- TA TA
1 TA -TA TA TA TA TA TA TA -TA TA TA TA -TA TA TA TA TA TA TA TA
* * * *
48888 CA TA TA TA T- TA T- TA TA TA TG TG TG TA TA TA TA TA TA CT- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA
* * *
48928 TA CT- TA TA T- TA T- TA TA TA TG TA TA AA TA CTT TA TA CTA -A
1 TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA
* * * * * *
48967 AA CTT TA TA TA CA TA TA TA AA CTT TA TA GTT TA TA TA TA TA CT-
1 TA -TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA -TA
* * * * * *
49010 TA TA TA CTT TA TT TC T- TA TA TA TA TA TA TA CA CTT TA TA TT TA
1 TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA
* * * * *
49053 TA TA CT- TG TA TA CTA T- TC TT TA TA -A T- TA TA CTT TT TA TA
1 TA TA -TA TA TA TA -TA TA TA TA TA TA TA TA TA TA -TA TA TA TA
* *
49092 TA TA TA TA TA CT- TA TA CTA TA CT- TA CTT TA T- TA TA TA TG TA
1 TA TA TA TA TA -TA TA TA -TA TA -TA TA -TA TA TA TA TA TA TA TA
* * *
49133 TA TA TA T- TT TA TA CTA -A AA CTT TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA TA TA TA TA TA
* * * *
49175 CTT TA TA T- TA TA TA CT- TA TA TA CTT TA GTC TT TA TA -A T- TA
1 -TA TA TA TA TA TA TA -TA TA TA TA -TA TA -TA TA TA TA TA TA TA
*
49215 TA CT- TA TA TA TA TA TA TA TA AA TA TA CT- TA TA CT- TA TA TA
1 TA -TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA
* * *
49255 CT- TA TA CTA TA TT TA TA TT TA TA T- TA -A T- TA TA TG TA TA TA
1 -TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
49295 TA CTT TA TA CTA -A AA CTT TA TA TA TA TA TA TA TA TA TA TA TA
1 TA -TA TA TA -TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
49337 TA CA CT- TA TA TA CTT TA TA TT TA -A TA CT- TA TA CT- TA -A TA
1 TA TA -TA TA TA TA -TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA
* * *
49376 CTT TA TA CTA T- TA TA TA CT- TA TA TA CTT TA TA CTA -A AA CT-
1 -TA TA TA -TA TA TA TA TA -TA TA TA TA -TA TA TA -TA TA TA -TA
* * * *
49416 TA TA TA TA CA TA CTT TT TA GTT TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA
49460 TA TA TA TA TA
1 TA TA TA TA TA
49470 AACTAAAAAG
Statistics
Matches: 704, Mismatches: 138, Indels: 276
0.63 0.12 0.25
Matches are distributed among these distances:
1 72 0.10
2 564 0.80
3 68 0.10
ACGTcount: A:0.42, C:0.06, G:0.03, T:0.48
Consensus pattern (2 bp):
TA
Found at i:48622 original size:69 final size:69
Alignment explanation
Indices: 48505--48731 Score: 198
Period size: 69 Copynumber: 3.3 Consensus size: 69
48495 ATATATTATG
* * * *
48505 TATAATTATAAA-T-TATATATATATATATATATATAAAGTTTTAGTATAAAGTATATA-TATAA
1 TATAA-TATAAAGTATATATATATATATATATATATAAAGTATAAGTATAAAGAATAAAGTAT-A
*
48567 TAA-TA
64 TAAGCA
*
48572 TATAA-AGTATAAGTATATATATATATATATATATATAAAGTATAATTATAAAGAATAAAGTATA
1 TATAATA-TA-AAGTATATATATATATATATATATATAAAGTATAAGTATAAAGAATAAAGTATA
48636 TAAGCA
64 TAAGCA
* * * * ** *
48642 TATAATATAAAGTATATATCTGTATATA-ATATATATATGTGTGTGTATATAATAATATAAAGTA
1 TATAATATAAAGTATATATATATATATATATATATA-AAGTATAAGTATA-AA-GA-ATAAAGTA
*
48706 TATAAGTA
62 TATAAGCA
48714 T-TAAATATAAAGTATATA
1 TAT-AATATAAAGTATATA
48732 AAGTAAATTA
Statistics
Matches: 133, Mismatches: 15, Indels: 19
0.80 0.09 0.11
Matches are distributed among these distances:
65 1 0.01
66 2 0.02
67 7 0.05
68 8 0.06
69 68 0.51
70 13 0.10
71 3 0.02
72 31 0.23
ACGTcount: A:0.51, C:0.01, G:0.08, T:0.41
Consensus pattern (69 bp):
TATAATATAAAGTATATATATATATATATATATATAAAGTATAAGTATAAAGAATAAAGTATATA
AGCA
Found at i:48636 original size:33 final size:33
Alignment explanation
Indices: 48523--48637 Score: 115
Period size: 33 Copynumber: 3.4 Consensus size: 33
48513 TAAATTATAT
* * *
48523 ATATATATATATATATAAAGTTTTAGTATAAAG
1 ATATAAATATATATATAAAGTATAAGTATAAAG
* * *
48556 TATATATATAATAATATATAAAGTATAAGTATATAT
1 -ATATAAAT-AT-ATATATAAAGTATAAGTATAAAG
* *
48592 ATATATATATATATATAAAGTATAATTATAAAG
1 ATATAAATATATATATAAAGTATAAGTATAAAG
48625 A-ATAAAGTATATA
1 ATATAAA-TATATA
48638 AGCATATAAT
Statistics
Matches: 70, Mismatches: 8, Indels: 7
0.82 0.09 0.08
Matches are distributed among these distances:
32 4 0.06
33 27 0.39
34 10 0.14
35 10 0.14
36 19 0.27
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (33 bp):
ATATAAATATATATATAAAGTATAAGTATAAAG
Found at i:48846 original size:13 final size:13
Alignment explanation
Indices: 48789--48849 Score: 59
Period size: 13 Copynumber: 4.5 Consensus size: 13
48779 ACTAATATAC
*
48789 TTATATTTAATAC
1 TTATATTTAATAT
* *
48802 ATATATTTTATAT
1 TTATATTTAATAT
*
48815 TATATACTTATATACT
1 T-TATATTTA-ATA-T
48831 TTATATTTAATAT
1 TTATATTTAATAT
48844 TTATAT
1 TTATAT
48850 ACTTTATATT
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
13 17 0.45
14 9 0.24
15 10 0.26
16 2 0.05
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (13 bp):
TTATATTTAATAT
Found at i:48990 original size:19 final size:19
Alignment explanation
Indices: 48966--49016 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
48956 CTTTATACTA
48966 AAACTTTATATACATATAT
1 AAACTTTATATACATATAT
**
48985 AAACTTTATAGTTTATATAT
1 AAACTTTATA-TACATATAT
*
49005 ATAC-TTATATAC
1 AAACTTTATATAC
49017 TTTATTTCTT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
18 1 0.04
19 15 0.58
20 10 0.38
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.45
Consensus pattern (19 bp):
AAACTTTATATACATATAT
Found at i:49015 original size:8 final size:8
Alignment explanation
Indices: 48918--49421 Score: 119
Period size: 8 Copynumber: 65.8 Consensus size: 8
48908 TGTGTATATA
48918 TATATAC-
1 TATATACT
48925 T-TATACT
1 TATATACT
48932 TATATTA-T
1 TATA-TACT
48940 TATATA-T
1 TATATACT
48947 GTATAAATACT
1 -TAT--ATACT
48958 T-TATAC-
1 TATATACT
*
48964 TA-AAACTT
1 TATATAC-T
48972 TATATACAT
1 TATATAC-T
*
48981 ATATAAACT
1 -TATATACT
*
48990 T-TATAGT
1 TATATACT
48997 T-TATA--
1 TATATACT
49002 TATATACT
1 TATATACT
49010 TATATACT
1 TATATACT
*
49018 T-TATTTCT
1 TATA-TACT
49026 TATATA-T
1 TATATACT
49033 ATATATACACT
1 -TATAT--ACT
*
49044 T-TATATT
1 TATATACT
49051 TATATACT
1 TATATACT
*
49059 TGTATAC-
1 TATATACT
49066 TAT-T-CT
1 TATATACT
*
49072 T-TATAAT
1 TATATACT
**
49079 TATACTTTT
1 TATA-TACT
49088 TATATA-T
1 TATATACT
49095 ATATATACTT
1 -TATATAC-T
49105 ATACTATACT
1 -TA-TATACT
*
49115 TACTTTA-T
1 TA-TATACT
49123 TATATA-T
1 TATATACT
*
49130 GTATATATAT
1 -TATATA-CT
*
49140 TTTATAC-
1 TATATACT
*
49147 TA-AAACT
1 TATATACT
49154 T-TATA-T
1 TATATACT
49160 ATATATA-T
1 -TATATACT
49168 ATATATACT
1 -TATATACT
49177 T-TATA-T
1 TATATACT
49183 TATATACT
1 TATATACT
49191 TATATACT
1 TATATACT
49199 T-TAGT-CT
1 TATA-TACT
*
49206 T-TATA-A
1 TATATACT
49212 T-TATACT
1 TATATACT
49219 TATATA-T
1 TATATACT
49226 ATATATA-T
1 -TATATACT
*
49234 AAATATAC-
1 -TATATACT
49242 T-TATACT
1 TATATACT
49249 TATATACT
1 TATATACT
49257 TATACTA-T
1 TATA-TACT
* *
49265 ATTTATATT
1 -TATATACT
*
49274 TATATTAAT
1 TATA-TACT
*
49283 TATAT-GT
1 TATATACT
49290 ATATATACT
1 -TATATACT
49299 T-TATAC-
1 TATATACT
*
49305 TA-AAACT
1 TATATACT
49312 T-TATA-T
1 TATATACT
49318 ATATATA-T
1 -TATATACT
49326 ATATATA-T
1 -TATATACT
*
49334 ATATACACT
1 -TATATACT
49343 TATATACT
1 TATATACT
*
49351 T-TATATT
1 TATATACT
49358 TA-ATAC-
1 TATATACT
49364 T-TATACT
1 TATATACT
49371 TA-ATACT
1 TATATACT
49378 T-TATACTAT
1 TATATAC--T
49387 TATATACT
1 TATATACT
49395 TATATACT
1 TATATACT
49403 T-TATAC-
1 TATATACT
*
49409 TA-AAACT
1 TATATACT
49416 TATATA
1 TATATA
49422 TACATACTTT
Statistics
Matches: 385, Mismatches: 40, Indels: 143
0.68 0.07 0.25
Matches are distributed among these distances:
5 3 0.01
6 47 0.12
7 93 0.24
8 164 0.43
9 48 0.12
10 23 0.06
11 7 0.02
ACGTcount: A:0.39, C:0.09, G:0.01, T:0.51
Consensus pattern (8 bp):
TATATACT
Found at i:49293 original size:66 final size:66
Alignment explanation
Indices: 49151--49296 Score: 187
Period size: 66 Copynumber: 2.3 Consensus size: 66
49141 TTATACTAAA
* * *
49151 ACTT-TATATATATATATATATATACTTTATATTATATACTTATATACTTTAGTCTTTATAATTA
1 ACTTATATATATATATATAAATATACTTTATATTATATACTTATATAATTTAGTATTTATAATTA
49215 T
66 T
49216 ACTTATATATATATATATAAATATAC-TTATACTTATATACTTATACTATATTTA-TATTTAT-A
1 ACTTATATATATATATATAAATATACTTTATA-TTATATACTTATA-TA-ATTTAGTATTTATAA
49278 TTA-
63 TTAT
*
49281 A-TTATATGTATATATA
1 ACTTATATATATATATA
49297 CTTTATACTA
Statistics
Matches: 73, Mismatches: 4, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
64 14 0.19
65 10 0.14
66 37 0.51
67 8 0.11
68 4 0.05
ACGTcount: A:0.40, C:0.07, G:0.01, T:0.52
Consensus pattern (66 bp):
ACTTATATATATATATATAAATATACTTTATATTATATACTTATATAATTTAGTATTTATAATTA
T
Found at i:49368 original size:158 final size:153
Alignment explanation
Indices: 49096--49449 Score: 404
Period size: 158 Copynumber: 2.3 Consensus size: 153
49086 TTTATATATA
*
49096 TATATACTTATACTATACTTACTTTATTATATATGTATATATATTTTATACTAAAACTTTATATA
1 TATATACTTATACTATACTTACTTTATTATATATGTATATATACTTTATACTAAAACTTTATATA
* *
49161 TATATATATATATACTTTATATTATATACTTATATACTTTAGTCTTTATAATT-ATACTTATATA
66 TATATATATATATACTTTACATTATATACTTATATACTTTAATCTTTATAATTAATACTT-TATA
49225 -TATATATATAAATATACTTATACT
130 CTAT-TATATAAATATACTTATACT
* *
49249 TATATACTTATACTATATTTATATTTATATTAATTATATGTATATATACTTTATACTAAAACTTT
1 TATATACTTATACTATA-CT-TACTT-TATT-A-TATATGTATATATACTTTATACTAAAACTTT
*
49314 ATATATATATATATATATA-TATATACACTTATATACTT-TATA-TTTAATAC-TTATACTTAAT
61 ATATATATATATATATATACT-T-TACA-TTATATACTTATATACTTTAAT-CTTTATAATTAAT
*
49375 ACTTTATACTATTATATACTTATATACTTTATAC-
122 ACTTTATACTATTATATA--AATATAC-TTATACT
* * * *
49409 TA-AAACTTATA-TATACATACTTT-TTAGTTTATATATATATA
1 TATATACTTATACTATACTTACTTTATTA-TATATGTATATATA
49450 TATATATATA
Statistics
Matches: 173, Mismatches: 14, Indels: 28
0.80 0.07 0.13
Matches are distributed among these distances:
153 30 0.17
154 3 0.02
155 5 0.03
156 8 0.05
157 2 0.01
158 76 0.44
159 25 0.14
160 18 0.10
161 6 0.03
ACGTcount: A:0.40, C:0.09, G:0.01, T:0.51
Consensus pattern (153 bp):
TATATACTTATACTATACTTACTTTATTATATATGTATATATACTTTATACTAAAACTTTATATA
TATATATATATATACTTTACATTATATACTTATATACTTTAATCTTTATAATTAATACTTTATAC
TATTATATAAATATACTTATACT
Found at i:49407 original size:104 final size:99
Alignment explanation
Indices: 49026--49423 Score: 272
Period size: 100 Copynumber: 4.0 Consensus size: 99
49016 CTTTATTTCT
* * * * * **
49026 TATATATATATATACACTTTATATTTATATACTTGTATACTATTCTTTATAATTATACTTTTTAT
1 TATATATATAAATACAC-TTATACTTATATAC-T-TATACTA-TATTAATATTTATACTAATTAT
* *
49091 ATATATATATAC-TTATACT-ATACTTACT-T-TAT-TA
62 ATCTATATATACTTTATACTAAAACTTA-TATATATATA
* * ** * *
49125 TATATGTATATATA-TTTTATAC-TA-AAACTT-TA-TATATATATATATATATACTTTATATTA
1 TATATATATAAATACACTTATACTTATATACTTATACTATAT-TA-ATATTTATAC--TA-ATTA
*
49185 TATACT-TATATACTTTAGT-CTTTATAA-TTATACT-TATATA
61 TAT-CTATATATACTTTA-TAC--TAAAACTTATA-TATATATA
* * * *
49225 TATATATATAAATATACTTATACTTATATACTTATACTATATTTATATTTATATTAATTATATGT
1 TATATATATAAATACACTTATACTTATATACTTATACTATATTAATATTTATACTAATTATATCT
49290 ATATATACTTTATACTAAAACTTTATATATATATA
66 ATATATACTTTATACTAAAAC-TTATATATATATA
* *
49325 TATATATATATATACACTTATATACTT-TATATTTAATACTTATACTTAATACTTTATACT-ATT
1 TATATATATAAATACAC-T-TATACTTATATACTT-ATAC-TATA-TTAATA-TTTATACTAATT
49388 ATATACT-TATATACTTTATACTAAAACTTATATATA
60 ATAT-CTATATATACTTTATACTAAAACTTATATATA
49424 CATACTTTTT
Statistics
Matches: 238, Mismatches: 30, Indels: 58
0.73 0.09 0.18
Matches are distributed among these distances:
90 2 0.01
91 3 0.01
92 10 0.04
93 1 0.00
94 2 0.01
95 16 0.07
96 7 0.03
97 7 0.03
98 8 0.03
99 21 0.09
100 59 0.25
101 15 0.06
102 13 0.05
103 26 0.11
104 35 0.15
105 13 0.05
ACGTcount: A:0.39, C:0.09, G:0.01, T:0.51
Consensus pattern (99 bp):
TATATATATAAATACACTTATACTTATATACTTATACTATATTAATATTTATACTAATTATATCT
ATATATACTTTATACTAAAACTTATATATATATA
Found at i:49423 original size:25 final size:26
Alignment explanation
Indices: 49291--49423 Score: 93
Period size: 25 Copynumber: 5.2 Consensus size: 26
49281 ATTATATGTA
*
49291 TATATACTTTATACTAAAACTTTATA-
1 TATATACTTTATACTAATAC-TTATAC
* *
49317 TATATA-TATATA-TATATA-TATACAC
1 TATATACTTTATACTA-ATACT-TATAC
*
49342 TTATATACTTTATATTTAATACTTATAC
1 -TATATACTTTATA-CTAATACTTATAC
*
49370 T-TAATACTTTATACTATTA--TATAC
1 TAT-ATACTTTATACTAATACTTATAC
*
49394 TTATATACTTTATACTAAAACTTATA-
1 -TATATACTTTATACTAATACTTATAC
49420 TATA
1 TATA
49424 CATACTTTTT
Statistics
Matches: 85, Mismatches: 9, Indels: 27
0.70 0.07 0.22
Matches are distributed among these distances:
23 1 0.01
24 10 0.12
25 26 0.31
26 18 0.21
27 20 0.24
28 7 0.08
29 3 0.04
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.48
Consensus pattern (26 bp):
TATATACTTTATACTAATACTTATAC
Found at i:49429 original size:52 final size:51
Alignment explanation
Indices: 49291--49431 Score: 171
Period size: 52 Copynumber: 2.7 Consensus size: 51
49281 ATTATATGTA
*
49291 TATATACTTTATACTAAAACTTTATATATATATA-TATATATATATATACACT
1 TATATACTTTATACTAAAAC-TTATATATA-ATACTTTATATATATATACACT
* * *
49343 TATATACTTTATATTTAATACTTATACT-TAATACTTTATACTAT-TATATACT
1 TATATACTTTATA-CTAAAACTTATA-TATAATACTTTATA-TATATATACACT
49395 TATATACTTTATACTAAAACTTATATATACATACTTT
1 TATATACTTTATACTAAAACTTATATATA-ATACTTT
49432 TTAGTTTATA
Statistics
Matches: 77, Mismatches: 6, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
50 1 0.01
51 15 0.19
52 52 0.68
53 9 0.12
ACGTcount: A:0.40, C:0.11, G:0.00, T:0.48
Consensus pattern (51 bp):
TATATACTTTATACTAAAACTTATATATAATACTTTATATATATATACACT
Found at i:49535 original size:7 final size:7
Alignment explanation
Indices: 49499--49569 Score: 56
Period size: 7 Copynumber: 9.4 Consensus size: 7
49489 ATAAAGTTTT
49499 AGTATAA
1 AGTATAA
49506 AGTGTATAA
1 A--GTATAA
49515 AGTATATAA
1 AG--TATAA
49524 TAGTATAA
1 -AGTATAA
*
49532 AGTATTA
1 AGTATAA
49539 AGTAT-A
1 AGTATAA
49545 AGTATTAA
1 AGTA-TAA
49553 A-TATAA
1 AGTATAA
49559 AGTATATA
1 AGTATA-A
49567 AGT
1 AGT
49570 GTATATATAT
Statistics
Matches: 54, Mismatches: 1, Indels: 17
0.75 0.01 0.24
Matches are distributed among these distances:
6 9 0.17
7 20 0.37
8 11 0.20
9 12 0.22
10 2 0.04
ACGTcount: A:0.51, C:0.00, G:0.14, T:0.35
Consensus pattern (7 bp):
AGTATAA
Found at i:49561 original size:20 final size:24
Alignment explanation
Indices: 49498--49567 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 24
49488 TATAAAGTTT
49498 TAGTATAAAGTGTATAAAGTATATAA
1 TAGTATAAA--GTATAAAGTATATAA
* *
49524 TAGTATAAAGTATTAAGTATA-AG
1 TAGTATAAAGTATAAAGTATATAA
49547 TA-T-TAAA-TATAAAGTATATAA
1 TAGTATAAAGTATAAAGTATATAA
49568 GTGTATATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
20 10 0.26
21 5 0.13
22 1 0.03
23 3 0.08
24 11 0.28
26 9 0.23
ACGTcount: A:0.51, C:0.00, G:0.13, T:0.36
Consensus pattern (24 bp):
TAGTATAAAGTATAAAGTATATAA
Found at i:49608 original size:2 final size:2
Alignment explanation
Indices: 49571--49598 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
49561 TATATAAGTG
49571 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
49599 CACTTATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:49630 original size:20 final size:20
Alignment explanation
Indices: 49605--49667 Score: 65
Period size: 20 Copynumber: 3.0 Consensus size: 20
49595 TATACACTTA
*
49605 TATACTTTATA-TTTAATACT
1 TATACTTAATACTTT-ATACT
49625 TATACTTAATACTTTATACTAT
1 TATACTTAATACTTTATAC--T
*
49647 TATACTTATACACTTTATACT
1 TATACTTA-ATACTTTATACT
49668 AAAACTTTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
20 14 0.38
21 4 0.11
22 9 0.24
23 10 0.27
ACGTcount: A:0.35, C:0.14, G:0.00, T:0.51
Consensus pattern (20 bp):
TATACTTAATACTTTATACT
Found at i:49642 original size:36 final size:37
Alignment explanation
Indices: 49600--49681 Score: 91
Period size: 35 Copynumber: 2.3 Consensus size: 37
49590 ATATATATAC
* * *
49600 ACTTATATACT-TTATATTTA-ATAC-TTATACTTAAT
1 ACTTATATACTATTATACTTATACACTTTATAC-TAAA
49635 ACTT-TATACTATTATACTTATACACTTTATACTAAA
1 ACTTATATACTATTATACTTATACACTTTATACTAAA
49671 ACTTTATATAC
1 AC-TTATATAC
49682 ATACTTTTAG
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
34 6 0.15
35 12 0.31
36 8 0.21
37 8 0.21
38 5 0.13
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.48
Consensus pattern (37 bp):
ACTTATATACTATTATACTTATACACTTTATACTAAA
Found at i:49651 original size:8 final size:7
Alignment explanation
Indices: 49600--49667 Score: 68
Period size: 7 Copynumber: 9.4 Consensus size: 7
49590 ATATATATAC
49600 ACTTATAT
1 ACTT-TAT
49608 ACTTTAT
1 ACTTTAT
49615 A-TTTAAT
1 ACTTT-AT
49622 AC-TTAT
1 ACTTTAT
*
49628 ACTTAAT
1 ACTTTAT
49635 ACTTTAT
1 ACTTTAT
49642 ACTATTAT
1 ACT-TTAT
*
49650 ACTTATAC
1 ACTT-TAT
49658 ACTTTAT
1 ACTTTAT
49665 ACT
1 ACT
49668 AAAACTTTAT
Statistics
Matches: 51, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
6 7 0.14
7 27 0.53
8 17 0.33
ACGTcount: A:0.35, C:0.15, G:0.00, T:0.50
Consensus pattern (7 bp):
ACTTTAT
Found at i:49699 original size:2 final size:2
Alignment explanation
Indices: 49694--50224 Score: 200
Period size: 2 Copynumber: 264.0 Consensus size: 2
49684 ACTTTTAGTT
49694 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
49736 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA CT- TA TA TG
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA
* * * *
49778 TA TA TA TA TA CA TA TA TA CTT TA TA TA CT- TA TA TA CTT TT TA
1 TA TA TA TA TA TA TA TA TA -TA TA TA TA -TA TA TA TA -TA TA TA
* * * *
49820 T- TA TA TA CT- TA TA TA CTT TA T- TC TT TA TA -A T- TA TA CTT
1 TA TA TA TA -TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA -TA
* *
49858 TA TA TA TA -A TA TA TA T- TA T- TC TT TA TA T- TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * *
49895 TA TA TA CA TA TA TA CTT TA TA T- TCA AA CTT TA TA TA TA TA TA
1 TA TA TA TA TA TA TA -TA TA TA TA T-A TA -TA TA TA TA TA TA TA
* * *
49937 TA -A GTA TA TA -A TA TA TA TA AA GT- TT TA GTA TA AA GTA TA TA
1 TA TA -TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA -TA TA TA
* * * *
49978 TA CTT TA TA GTT TA TA TT TA TA -A T- TA TA -A GA TA CT- TA TA
1 TA -TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA
* * * *
50017 CTT TA TA GT- TA TA TA TA TA TA CTC TA TA CTT TA AA GTA TA TA TA
1 -TA TA TA -TA TA TA TA TA TA TA -TA TA TA -TA TA TA -TA TA TA TA
** * * * *
50061 CC T- TA TA GTT TA TA TA TA TA T- TA TA TA TA CTT TA CA GTT TA
1 TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA
* * * * * *
50102 CA CTT TA TA TA TA TA CT- TA TA CT- TT TT TA TA TA TG TA TA TT
1 TA -TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA TA TA TA TA
* * *
50143 TA AA TA -A GTA TA TA TA TA TT TA TA TA CA TA TA -A GTA TA TA CT-
1 TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA
*
50185 TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
50225 CTTCTAATGT
Statistics
Matches: 397, Mismatches: 73, Indels: 118
0.68 0.12 0.20
Matches are distributed among these distances:
1 28 0.07
2 343 0.86
3 26 0.07
ACGTcount: A:0.41, C:0.06, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:50022 original size:30 final size:27
Alignment explanation
Indices: 49972--50126 Score: 81
Period size: 27 Copynumber: 5.7 Consensus size: 27
49962 TAGTATAAAG
* * *
49972 TATATATACTTTATAGTTTATATTTATAA
1 TATAGATAC-TTATACTTTATAGTTAT-A
50001 TTATAAGATACTTATACTTTATAGTTATA
1 -TAT-AGATACTTATACTTTATAGTTATA
* *
50030 TATATATACTCTATACTTTAAAG-TATA
1 TATAGATACT-TATACTTTATAGTTATA
* *
50057 TAT--A-CCTTATAGTTTATA-TATATA
1 TATAGATACTTATACTTTATAGT-TATA
* * *
50081 TTATATATACTT-TACAGTTTACACTT-TA
1 -TATAGATACTTATAC--TTTATAGTTATA
*
50109 TATATATACTTATACTTT
1 TATAGATACTTATACTTT
50127 TTTATATATG
Statistics
Matches: 102, Mismatches: 11, Indels: 28
0.72 0.08 0.20
Matches are distributed among these distances:
23 9 0.09
24 6 0.06
25 4 0.04
26 3 0.03
27 27 0.26
28 22 0.22
29 7 0.07
30 19 0.19
31 5 0.05
ACGTcount: A:0.37, C:0.09, G:0.04, T:0.50
Consensus pattern (27 bp):
TATAGATACTTATACTTTATAGTTATA
Found at i:50052 original size:81 final size:77
Alignment explanation
Indices: 49967--50126 Score: 214
Period size: 81 Copynumber: 2.0 Consensus size: 77
49957 AGTTTTAGTA
* * * *
49967 TAAAGTATATATACTTTATAGTTTATATTTATAATTATAAGATACTTATAC-TTTATAGTTATAT
1 TAAAGTATATATACCTTATAGTTTATATATAT-ATTAT-AGATACTT-TACATTTACACTT-TAT
50031 ATATATACTCTATACTT
62 ATATATACT-TATACTT
*
50048 TAAAGTATATATACCTTATAGTTTATATATATATTATATATACTTTACAGTTTACACTTTATATA
1 TAAAGTATATATACCTTATAGTTTATATATATATTATAGATACTTTACA-TTTACACTTTATATA
50113 TATACTTATACTT
65 TATACTTATACTT
50126 T
1 T
50127 TTTATATATG
Statistics
Matches: 72, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
78 11 0.15
79 19 0.26
80 12 0.17
81 30 0.42
ACGTcount: A:0.38, C:0.09, G:0.04, T:0.49
Consensus pattern (77 bp):
TAAAGTATATATACCTTATAGTTTATATATATATTATAGATACTTTACATTTACACTTTATATAT
ATACTTATACTT
Found at i:50056 original size:27 final size:27
Alignment explanation
Indices: 50008--50126 Score: 90
Period size: 27 Copynumber: 4.5 Consensus size: 27
49998 TAATTATAAG
*
50008 ATACTTATACTTTATAGTTATATATAT
1 ATACTTATACTTTAAAGTTATATATAT
50035 ATACTCTATACTTTAAAG---TATATAT
1 ATACT-TATACTTTAAAGTTATATATAT
* * *
50060 A-CCTTATAGTTTATA-TATATATTATAT
1 ATACTTATACTTTAAAGT-TATA-TATAT
* *
50087 ATACTT-TACAGTTTACACTT-TATATAT
1 ATACTTATAC--TTTAAAGTTATATATAT
50114 ATACTTATACTTT
1 ATACTTATACTTT
50127 TTTATATATG
Statistics
Matches: 74, Mismatches: 7, Indels: 23
0.71 0.07 0.22
Matches are distributed among these distances:
23 9 0.12
24 2 0.03
25 8 0.11
26 5 0.07
27 24 0.32
28 19 0.26
29 6 0.08
30 1 0.01
ACGTcount: A:0.36, C:0.11, G:0.03, T:0.50
Consensus pattern (27 bp):
ATACTTATACTTTAAAGTTATATATAT
Found at i:50085 original size:29 final size:29
Alignment explanation
Indices: 50053--50141 Score: 80
Period size: 29 Copynumber: 3.2 Consensus size: 29
50043 TACTTTAAAG
50053 TATATATACCTTATAGTTTATATATATAT
1 TATATATACCTTATAGTTTATATATATAT
* * *
50082 TATATATACTTTACAGTTTACACT-T-TA-
1 TATATATACCTTATAGTTTATA-TATATAT
* *
50109 TATATATA-CTTATACTTT-TTTATATAT
1 TATATATACCTTATAGTTTATATATATAT
50136 GTATAT
1 -TATAT
50142 TTAAATAAGT
Statistics
Matches: 47, Mismatches: 8, Indels: 11
0.71 0.12 0.17
Matches are distributed among these distances:
24 1 0.02
25 1 0.02
26 9 0.19
27 8 0.17
28 7 0.15
29 20 0.43
30 1 0.02
ACGTcount: A:0.35, C:0.09, G:0.03, T:0.53
Consensus pattern (29 bp):
TATATATACCTTATAGTTTATATATATAT
Found at i:50294 original size:20 final size:20
Alignment explanation
Indices: 50269--50322 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
50259 GTATAATGTA
50269 CATATTATATATACATGCAT
1 CATATTATATATACATGCAT
*
50289 CATATTATCATAT-CATTCAT
1 CATATTAT-ATATACATGCAT
*
50309 TATATATATATATA
1 CATAT-TATATATA
50323 ATTTGTGATT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
20 22 0.76
21 7 0.24
ACGTcount: A:0.41, C:0.13, G:0.02, T:0.44
Consensus pattern (20 bp):
CATATTATATATACATGCAT
Found at i:50638 original size:2 final size:2
Alignment explanation
Indices: 50618--50670 Score: 79
Period size: 2 Copynumber: 26.5 Consensus size: 2
50608 TTTAGTACTT
* * *
50618 TA TA TA CA TA CA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
50660 TA TA TA TA TA T
1 TA TA TA TA TA T
50671 TAAGTTTTTC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.45
Consensus pattern (2 bp):
TA
Found at i:51125 original size:8 final size:8
Alignment explanation
Indices: 51112--51150 Score: 60
Period size: 8 Copynumber: 4.8 Consensus size: 8
51102 TAAAGTATAA
51112 GTATATGT
1 GTATATGT
51120 GTATATGT
1 GTATATGT
*
51128 GTATACGT
1 GTATATGT
51136 GTATATGT
1 GTATATGT
51144 GATATAT
1 G-TATAT
51151 ATAAAGTATA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
8 23 0.82
9 5 0.18
ACGTcount: A:0.28, C:0.03, G:0.23, T:0.46
Consensus pattern (8 bp):
GTATATGT
Found at i:56078 original size:19 final size:19
Alignment explanation
Indices: 56054--56090 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
56044 ATGATCAACA
*
56054 AAATCGCAATGCGATCTCT
1 AAATCGCAACGCGATCTCT
56073 AAATCGCAACGCGATCTC
1 AAATCGCAACGCGATCTC
56091 CAGTATCGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (19 bp):
AAATCGCAACGCGATCTCT
Found at i:56186 original size:20 final size:20
Alignment explanation
Indices: 56116--56208 Score: 80
Period size: 20 Copynumber: 4.6 Consensus size: 20
56106 GTTTCCAGAT
* *
56116 TCGCAACGCGATTTTG-ACTA
1 TCGCAATGCGATTTTGTA-AA
* **
56136 TCGCATTGCGATTTTCCAAA
1 TCGCAATGCGATTTTGTAAA
**
56156 TTCGCGTTGCGATTTTGTAAA
1 -TCGCAATGCGATTTTGTAAA
* *
56177 TCGCAATGCGAATATGTAAA
1 TCGCAATGCGATTTTGTAAA
56197 TCGCAATGCGAT
1 TCGCAATGCGAT
56209 AATACATAAT
Statistics
Matches: 59, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
20 41 0.69
21 18 0.31
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.32
Consensus pattern (20 bp):
TCGCAATGCGATTTTGTAAA
Found at i:56221 original size:21 final size:21
Alignment explanation
Indices: 56195--56270 Score: 84
Period size: 21 Copynumber: 3.7 Consensus size: 21
56185 CGAATATGTA
*
56195 AATCGCAATGCGATAATACAT
1 AATCGCAACGCGATAATACAT
**
56216 AATCGCAACGCGATTCTGAC-T
1 AATCGCAACGCGATAAT-ACAT
*
56237 -ATCGCAACGCGATAATACAA
1 AATCGCAACGCGATAATACAT
*
56257 AATCGCAATGCGAT
1 AATCGCAACGCGAT
56271 TTTCAAAGCG
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
19 2 0.04
20 14 0.31
21 27 0.60
22 2 0.04
ACGTcount: A:0.38, C:0.24, G:0.17, T:0.21
Consensus pattern (21 bp):
AATCGCAACGCGATAATACAT
Found at i:56270 original size:41 final size:41
Alignment explanation
Indices: 56174--56271 Score: 126
Period size: 41 Copynumber: 2.4 Consensus size: 41
56164 GCGATTTTGT
* *
56174 AAATCGCAATGCGAATATGTAAATCGCAATGCGATAATACA
1 AAATCGCAATGCGATTATGTAAATCGCAACGCGATAATACA
* * * *
56215 TAATCGCAACGCGATTCTG-ACTATCGCAACGCGATAATACA
1 AAATCGCAATGCGATTATGTA-AATCGCAACGCGATAATACA
56256 AAATCGCAATGCGATT
1 AAATCGCAATGCGATT
56272 TTCAAAGCGA
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
40 1 0.02
41 47 0.98
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.22
Consensus pattern (41 bp):
AAATCGCAATGCGATTATGTAAATCGCAACGCGATAATACA
Found at i:61838 original size:20 final size:20
Alignment explanation
Indices: 61813--61915 Score: 109
Period size: 20 Copynumber: 5.2 Consensus size: 20
61803 AAAATCGCAA
*
61813 CGATAGTCAAATTCGCGTTG
1 CGATAGTCAATTTCGCGTTG
* * *
61833 CGATAGTCATTTTCGTGTTA
1 CGATAGTCAATTTCGCGTTG
**
61853 CGATTTTC-ATTTCGCGTTG
1 CGATAGTCAATTTCGCGTTG
* *
61872 CGATAGTCAAATTCGCATTG
1 CGATAGTCAATTTCGCGTTG
* *
61892 CGATAGTCATTTTCGTGTTG
1 CGATAGTCAATTTCGCGTTG
61912 CGAT
1 CGAT
61916 TTTAAGTTTC
Statistics
Matches: 65, Mismatches: 17, Indels: 2
0.77 0.20 0.02
Matches are distributed among these distances:
19 14 0.22
20 51 0.78
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.39
Consensus pattern (20 bp):
CGATAGTCAATTTCGCGTTG
Found at i:61902 original size:39 final size:39
Alignment explanation
Indices: 61812--61915 Score: 109
Period size: 39 Copynumber: 2.6 Consensus size: 39
61802 GAAAATCGCA
* ** **
61812 ACGATAGTCAAATTCGCGTTGCGATAGTCATTTTCGTGTT
1 ACGATAGTC-ATTTCGCGTTGCGATAGTCAAATTCGCATT
**
61852 ACGATTTTCATTTCGCGTTGCGATAGTCAAATTCGCATT
1 ACGATAGTCATTTCGCGTTGCGATAGTCAAATTCGCATT
* *
61891 GCGATAGTCATTTTCGTGTTGCGAT
1 ACGATAGTCA-TTTCGCGTTGCGAT
61916 TTTAAGTTTC
Statistics
Matches: 52, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
39 32 0.62
40 20 0.38
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.38
Consensus pattern (39 bp):
ACGATAGTCATTTCGCGTTGCGATAGTCAAATTCGCATT
Found at i:63851 original size:20 final size:20
Alignment explanation
Indices: 63826--63874 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
63816 CGAAACTTAA
63826 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
*
63846 ATCGCAACGCGGAAATGACT
1 ATCGCAACGCGAAAATGACT
63866 ATCGCAACG
1 ATCGCAACG
63875 GGATAATCGC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.37, C:0.27, G:0.22, T:0.14
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:63963 original size:19 final size:19
Alignment explanation
Indices: 63941--63982 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
63931 CTATCGCAAC
*
63941 GCGAATTTAGTTTCGCGTT
1 GCGAATTTAGTTTCGCATT
* *
63960 GCGATTTTGGTTTCGCATT
1 GCGAATTTAGTTTCGCATT
63979 GCGA
1 GCGA
63983 TTATCCCGTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.14, C:0.17, G:0.29, T:0.40
Consensus pattern (19 bp):
GCGAATTTAGTTTCGCATT
Found at i:64026 original size:20 final size:21
Alignment explanation
Indices: 64003--64046 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
63993 GCGATAGTCA
64003 TTTCCGCGTTGCGA-TTTAAG
1 TTTCCGCGTTGCGATTTTAAG
*
64023 TTT-CGTGTTGCGATTTTAAG
1 TTTCCGCGTTGCGATTTTAAG
64043 TTTC
1 TTTC
64047 AGAAACTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.14, C:0.16, G:0.23, T:0.48
Consensus pattern (21 bp):
TTTCCGCGTTGCGATTTTAAG
Found at i:64612 original size:42 final size:42
Alignment explanation
Indices: 64522--64642 Score: 107
Period size: 42 Copynumber: 2.9 Consensus size: 42
64512 CCGACTCATC
* * * * * *
64522 TGTCATCATTCAAGAGGCCTCTCCTATCGTTCAAGAGGCCCC
1 TGTCATCACTCAAGAGGCCCCTCCCACCGTTAAAGAGGCCCA
* * *
64564 TATCATCCCTCAAGAGTCCCCTCCCACCGTTAAAGAGGCCCA
1 TGTCATCACTCAAGAGGCCCCTCCCACCGTTAAAGAGGCCCA
* * * * * *
64606 TGTCATCATTGAATAGGTCCCTCCCACCATTCAAGAG
1 TGTCATCACTCAAGAGGCCCCTCCCACCGTTAAAGAG
64643 CCCGATTCAT
Statistics
Matches: 61, Mismatches: 18, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
42 61 1.00
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.24
Consensus pattern (42 bp):
TGTCATCACTCAAGAGGCCCCTCCCACCGTTAAAGAGGCCCA
Found at i:65227 original size:131 final size:133
Alignment explanation
Indices: 64991--65242 Score: 490
Period size: 131 Copynumber: 1.9 Consensus size: 133
64981 TATTTCATTT
64991 TGATTATTTTTTTTAAAATTTATGTAATTCACTAATATATGTCTTTTTTTTTGTAAAACAACATA
1 TGATTATTTTTTTTAAAATTTATGTAATTCACTAATATATGTCTTTTTTTTTGTAAAACAACATA
65056 TTGATGCATGGGTGTCACGTCTTCTAATAGTAAGGAAATTGAAGAAAAATAAAAAATACTGTATA
66 TTGATGCATGGGTGTCACGTCTTCTAATAGTAAGGAAATTGAAGAAAAATAAAAAATACTGTATA
65121 CAA
131 CAA
65124 TGATTATTTTTTTT-AAATTTATGTAATTCACTAATATATGTC-TTTTTTTTGTAAAACAACATA
1 TGATTATTTTTTTTAAAATTTATGTAATTCACTAATATATGTCTTTTTTTTTGTAAAACAACATA
65187 TTGATGCATGGGTGTCACGTCTTCTAATAGTAAGGAAATTGAAGAAAAATAAAAAA
66 TTGATGCATGGGTGTCACGTCTTCTAATAGTAAGGAAATTGAAGAAAAATAAAAAA
65243 AATACGTGAT
Statistics
Matches: 119, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
131 77 0.65
132 28 0.24
133 14 0.12
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (133 bp):
TGATTATTTTTTTTAAAATTTATGTAATTCACTAATATATGTCTTTTTTTTTGTAAAACAACATA
TTGATGCATGGGTGTCACGTCTTCTAATAGTAAGGAAATTGAAGAAAAATAAAAAATACTGTATA
CAA
Found at i:66099 original size:14 final size:14
Alignment explanation
Indices: 66060--66103 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
66050 AATTGATTCT
*
66060 TAAAAGTCTGATTTA
1 TAAAAG-CTGATTTG
**
66075 TAAAAATTGATTTG
1 TAAAAGCTGATTTG
66089 TAAAAGCTGATTTG
1 TAAAAGCTGATTTG
66103 T
1 T
66104 TTAATATTGA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
14 19 0.79
15 5 0.21
ACGTcount: A:0.39, C:0.05, G:0.16, T:0.41
Consensus pattern (14 bp):
TAAAAGCTGATTTG
Found at i:66250 original size:20 final size:20
Alignment explanation
Indices: 66225--66278 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
66215 AGGTACACTT
*
66225 TCGCAACGCTAAA-CTCAAAA
1 TCGCAACGCGAAAGC-CAAAA
*
66245 TCGCAATGCGAAAGCCAAAA
1 TCGCAACGCGAAAGCCAAAA
66265 TCGCAACGCGAAAG
1 TCGCAACGCGAAAG
66279 TCAATTCGTG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
20 29 0.97
21 1 0.03
ACGTcount: A:0.43, C:0.28, G:0.19, T:0.11
Consensus pattern (20 bp):
TCGCAACGCGAAAGCCAAAA
Found at i:66332 original size:34 final size:34
Alignment explanation
Indices: 66289--66423 Score: 126
Period size: 34 Copynumber: 3.8 Consensus size: 34
66279 TCAATTCGTG
* * *
66289 TTGCGATAGTCTAATACGCTTTGTGATTTTCTCA
1 TTGCGATAGTCAAATACGCATTGCGATTTTCTCA
* * *
66323 TTGCGATAGTCAAATACCCGTTGCGATAATCAAATTCGCA
1 TTGCGATAGTCAAATACGCATTGCGAT--T----TTCTCA
* *
66363 TTGCGATAGTCAAATTCGCATTGCAATTTTCTCA
1 TTGCGATAGTCAAATACGCATTGCGATTTTCTCA
* *
66397 TTGCGATAGTCAAATACCCGTTGCGAT
1 TTGCGATAGTCAAATACGCATTGCGAT
66424 AATCAAATTC
Statistics
Matches: 81, Mismatches: 14, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
34 51 0.63
36 1 0.01
38 1 0.01
40 28 0.35
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.35
Consensus pattern (34 bp):
TTGCGATAGTCAAATACGCATTGCGATTTTCTCA
Found at i:66348 original size:20 final size:20
Alignment explanation
Indices: 66323--66584 Score: 271
Period size: 20 Copynumber: 13.8 Consensus size: 20
66313 GATTTTCTCA
* *
66323 TTGCGATAGTCAAATACCCG
1 TTGCGATAGTCAAATTCGCG
* *
66343 TTGCGATAATCAAATTCGCA
1 TTGCGATAGTCAAATTCGCG
*
66363 TTGCGATAGTCAAATTCGCA
1 TTGCGATAGTCAAATTCGCG
* * *
66383 TTGC-A-A-T---TTTCTCA
1 TTGCGATAGTCAAATTCGCG
* *
66397 TTGCGATAGTCAAATACCCG
1 TTGCGATAGTCAAATTCGCG
*
66417 TTGCGATAATCAAATTCGCG
1 TTGCGATAGTCAAATTCGCG
66437 TTGCGATAGTCAAATT-GCG
1 TTGCGATAGTCAAATTCGCG
* *
66456 TTGCGATAGTCATATTCGCA
1 TTGCGATAGTCAAATTCGCG
66476 TTGCGATAGTCAAATTCGCG
1 TTGCGATAGTCAAATTCGCG
* * *
66496 TTACGAT--T----TTTGAG
1 TTGCGATAGTCAAATTCGCG
*
66510 TTGCGATAATCAAATTCGCG
1 TTGCGATAGTCAAATTCGCG
66530 TTGCGATAGTCAAATTCGCG
1 TTGCGATAGTCAAATTCGCG
66550 TTGCGATAGTCAAATTCGCG
1 TTGCGATAGTCAAATTCGCG
*
66570 TTGCGATATTCAAAT
1 TTGCGATAGTCAAAT
66585 GAATGTGTAA
Statistics
Matches: 202, Mismatches: 27, Indels: 26
0.79 0.11 0.10
Matches are distributed among these distances:
14 19 0.09
15 1 0.00
16 2 0.01
17 2 0.01
18 2 0.01
19 19 0.09
20 157 0.78
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.32
Consensus pattern (20 bp):
TTGCGATAGTCAAATTCGCG
Found at i:66403 original size:54 final size:54
Alignment explanation
Indices: 66343--66556 Score: 232
Period size: 54 Copynumber: 3.9 Consensus size: 54
66333 CAAATACCCG
* *
66343 TTGCGATAATCAAATTCGCATTGCGATAGTCAAATTCGCATTGCAATTTTCTCA
1 TTGCGATAATCAAATTCGCATTGCGATAGTCAAATTCGCGTTGCGATTTTCTCA
* * * * * ** *
66397 TTGCGATAGTCAAATACCCGTTGCGATAATCAAATTCGCGTTGCGATAGTCAAATTGCG
1 TTGCGATAATCAAATTCGCATTGCGATAGTCAAATTCGCGTTGCGATTTTC----T-CA
* * * *
66456 TTGCGATAGTCATATTCGCATTGCGATAGTCAAATTCGCGTTACGATTTT-TGA
1 TTGCGATAATCAAATTCGCATTGCGATAGTCAAATTCGCGTTGCGATTTTCTCA
*
66509 GTTGCGATAATCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGAT
1 -TTGCGATAATCAAATTCGCATTGCGATAGTCAAATTCGCGTTGCGAT
66557 AGTCAAATTC
Statistics
Matches: 130, Mismatches: 24, Indels: 12
0.78 0.14 0.07
Matches are distributed among these distances:
54 86 0.66
58 1 0.01
59 43 0.33
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (54 bp):
TTGCGATAATCAAATTCGCATTGCGATAGTCAAATTCGCGTTGCGATTTTCTCA
Found at i:66452 original size:74 final size:74
Alignment explanation
Indices: 66281--66452 Score: 281
Period size: 74 Copynumber: 2.3 Consensus size: 74
66271 CGCGAAAGTC
* * * * **
66281 AATTCGTGTTGCGATAGTCTAATACGCTTTGTGATTTTCTCATTGCGATAGTCAAATACCCGTTG
1 AATTCGCGTTGCGATAGTCAAATTCGCATTGCAATTTTCTCATTGCGATAGTCAAATACCCGTTG
66346 CGATAATCA
66 CGATAATCA
*
66355 AATTCGCATTGCGATAGTCAAATTCGCATTGCAATTTTCTCATTGCGATAGTCAAATACCCGTTG
1 AATTCGCGTTGCGATAGTCAAATTCGCATTGCAATTTTCTCATTGCGATAGTCAAATACCCGTTG
66420 CGATAATCA
66 CGATAATCA
66429 AATTCGCGTTGCGATAGTCAAATT
1 AATTCGCGTTGCGATAGTCAAATT
66453 GCGTTGCGAT
Statistics
Matches: 90, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 90 1.00
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (74 bp):
AATTCGCGTTGCGATAGTCAAATTCGCATTGCAATTTTCTCATTGCGATAGTCAAATACCCGTTG
CGATAATCA
Found at i:66458 original size:113 final size:113
Alignment explanation
Indices: 66323--66584 Score: 373
Period size: 113 Copynumber: 2.3 Consensus size: 113
66313 GATTTTCTCA
** *
66323 TTGCGATAGTCAAATACCCGTTGCGATAATCAAATTCGCATTGCGATAGTCAAATTCGCATTGCA
1 TTGCGATAGTCAAAT-TGCGTTGCGATAATCAAATTCGCATTGCGATAGTCAAATTCGCATTACA
*
66388 ATTTTCTCA-TTGCGATAGTCAAATACCCGTTGCGATAATCAAATTCGCG
65 ATTTT-TCAGTTGCGATAATCAAATACCCGTTGCGATAATCAAATTCGCG
* * * *
66437 TTGCGATAGTCAAATTGCGTTGCGATAGTCATATTCGCATTGCGATAGTCAAATTCGCGTTACGA
1 TTGCGATAGTCAAATTGCGTTGCGATAATCAAATTCGCATTGCGATAGTCAAATTCGCATTACAA
* * * *
66502 TTTTTGAGTTGCGATAATCAAATTCGCGTTGCGATAGTCAAATTCGCG
66 TTTTTCAGTTGCGATAATCAAATACCCGTTGCGATAATCAAATTCGCG
*
66550 TTGCGATAGTCAAATTCGCGTTGCGATATTCAAAT
1 TTGCGATAGTCAAATT-GCGTTGCGATAATCAAAT
66585 GAATGTGTAA
Statistics
Matches: 132, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
112 2 0.02
113 99 0.75
114 31 0.23
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.32
Consensus pattern (113 bp):
TTGCGATAGTCAAATTGCGTTGCGATAATCAAATTCGCATTGCGATAGTCAAATTCGCATTACAA
TTTTTCAGTTGCGATAATCAAATACCCGTTGCGATAATCAAATTCGCG
Found at i:66554 original size:74 final size:73
Alignment explanation
Indices: 66436--66576 Score: 237
Period size: 74 Copynumber: 1.9 Consensus size: 73
66426 TCAAATTCGC
* *
66436 GTTGCGATAGTCAAATTGCGTTGCGATAGTCATATTCGCATTGCGATAGTCAAATTCGCGTTACG
1 GTTGCGATAATCAAATTGCGTTGCGATAGTCAAATTCGCATTGCGATAGTCAAATTCGCGTTACG
66501 ATTTTTGA
66 ATTTTTGA
* *
66509 GTTGCGATAATCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGC
1 GTTGCGATAATCAAATT-GCGTTGCGATAGTCAAATTCGCATTGCGATAGTCAAATTCGCGTTAC
66574 GAT
65 GAT
66577 ATTCAAATGA
Statistics
Matches: 63, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
73 16 0.25
74 47 0.75
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (73 bp):
GTTGCGATAATCAAATTGCGTTGCGATAGTCAAATTCGCATTGCGATAGTCAAATTCGCGTTACG
ATTTTTGA
Found at i:66807 original size:140 final size:140
Alignment explanation
Indices: 66555--66824 Score: 513
Period size: 140 Copynumber: 1.9 Consensus size: 140
66545 TCGCGTTGCG
*
66555 ATAGTCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACATATCA
1 ATAGTCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACAGATCA
* *
66620 TAGTAATGTTCAATCTCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACATAA
66 TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACATAA
66685 AATACACATA
131 AATACACATA
66695 ATAGTCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACAGATCA
1 ATAGTCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACAGATCA
66760 TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACATAA
66 TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACATAA
66825 TACAACGTTT
Statistics
Matches: 127, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
140 127 1.00
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.29
Consensus pattern (140 bp):
ATAGTCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACAGATCA
TAGCAATGTTCAAACTCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACATAA
AATACACATA
Found at i:69891 original size:22 final size:21
Alignment explanation
Indices: 69852--69892 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
69842 TTCCGGATGG
**
69852 GGAAGGATGTCGTTGGATATA
1 GGAAGGATGTCGCCGGATATA
69873 GGAACGGATGTCGCCGGATA
1 GGAA-GGATGTCGCCGGATA
69893 GAGTGATAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.27, C:0.12, G:0.39, T:0.22
Consensus pattern (21 bp):
GGAAGGATGTCGCCGGATATA
Found at i:70053 original size:20 final size:20
Alignment explanation
Indices: 70022--70150 Score: 127
Period size: 20 Copynumber: 6.3 Consensus size: 20
70012 GAAATTCAGT
*
70022 GTTGCGACAGTCAGAATCGC
1 GTTGCGATAGTCAGAATCGC
*
70042 GCTGCGATAGTCAGAATCGC
1 GTTGCGATAGTCAGAATCGC
**
70062 GTTGCGATTATGT-ATTATCGC
1 GTTGCGA-TA-GTCAGAATCGC
70083 GTTGCGATAGTCAGAATCGC
1 GTTGCGATAGTCAGAATCGC
* **
70103 GTTGTGATTATGT-ATTATCGC
1 GTTGCGA-TA-GTCAGAATCGC
* *
70124 GTTACGATAGTCAGAATCAC
1 GTTGCGATAGTCAGAATCGC
70144 GTTGCGA
1 GTTGCGA
70151 ATCTGGAAAC
Statistics
Matches: 87, Mismatches: 16, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
19 4 0.05
20 51 0.59
21 28 0.32
22 4 0.05
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (20 bp):
GTTGCGATAGTCAGAATCGC
Found at i:70082 original size:41 final size:41
Alignment explanation
Indices: 70037--70150 Score: 192
Period size: 41 Copynumber: 2.8 Consensus size: 41
70027 GACAGTCAGA
*
70037 ATCGCGCTGCGATAGTCAGAATCGCGTTGCGATTATGTATT
1 ATCGCGTTGCGATAGTCAGAATCGCGTTGCGATTATGTATT
*
70078 ATCGCGTTGCGATAGTCAGAATCGCGTTGTGATTATGTATT
1 ATCGCGTTGCGATAGTCAGAATCGCGTTGCGATTATGTATT
* *
70119 ATCGCGTTACGATAGTCAGAATCACGTTGCGA
1 ATCGCGTTGCGATAGTCAGAATCGCGTTGCGA
70151 ATCTGGAAAC
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 68 1.00
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (41 bp):
ATCGCGTTGCGATAGTCAGAATCGCGTTGCGATTATGTATT
Found at i:70083 original size:21 final size:21
Alignment explanation
Indices: 70057--70131 Score: 91
Period size: 21 Copynumber: 3.6 Consensus size: 21
70047 GATAGTCAGA
70057 ATCGCGTTGCGATTATGTATT
1 ATCGCGTTGCGATTATGTATT
**
70078 ATCGCGTTGCGA-TA-GTCAGA
1 ATCGCGTTGCGATTATGT-ATT
*
70098 ATCGCGTTGTGATTATGTATT
1 ATCGCGTTGCGATTATGTATT
*
70119 ATCGCGTTACGAT
1 ATCGCGTTGCGAT
70132 AGTCAGAATC
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
19 2 0.05
20 14 0.32
21 26 0.59
22 2 0.05
ACGTcount: A:0.21, C:0.16, G:0.25, T:0.37
Consensus pattern (21 bp):
ATCGCGTTGCGATTATGTATT
Found at i:70889 original size:19 final size:20
Alignment explanation
Indices: 70865--70912 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 20
70855 AGGCAAAAAA
*
70865 AATTAAAAAAT-TCCAAGTT
1 AATTAAAAAATGTCAAAGTT
70884 AATT---AAATGTCAAAGTT
1 AATTAAAAAATGTCAAAGTT
70901 AATTAAAAAATG
1 AATTAAAAAATG
70913 CTCTATCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 7
0.75 0.03 0.22
Matches are distributed among these distances:
16 4 0.17
17 11 0.46
19 4 0.17
20 5 0.21
ACGTcount: A:0.54, C:0.06, G:0.08, T:0.31
Consensus pattern (20 bp):
AATTAAAAAATGTCAAAGTT
Found at i:70966 original size:19 final size:20
Alignment explanation
Indices: 70942--70987 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 20
70932 CAGGAAAAAA
70942 AATTAAAAAATCTC-AAGTT
1 AATTAAAAAATCTCAAAGTT
*
70961 AATT---AAATGTCAAAGTT
1 AATTAAAAAATCTCAAAGTT
70978 AATTAAAAAA
1 AATTAAAAAA
70988 ATATATTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 7
0.73 0.03 0.23
Matches are distributed among these distances:
16 6 0.27
17 9 0.41
19 4 0.18
20 3 0.14
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.30
Consensus pattern (20 bp):
AATTAAAAAATCTCAAAGTT
Found at i:70973 original size:16 final size:17
Alignment explanation
Indices: 70949--70984 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
70939 AAAAATTAAA
70949 AAATCTC-AAGTTAATT
1 AAATCTCAAAGTTAATT
*
70965 AAATGTCAAAGTTAATT
1 AAATCTCAAAGTTAATT
70982 AAA
1 AAA
70985 AAAATATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.50, C:0.08, G:0.08, T:0.33
Consensus pattern (17 bp):
AAATCTCAAAGTTAATT
Found at i:70982 original size:36 final size:36
Alignment explanation
Indices: 70865--70987 Score: 97
Period size: 36 Copynumber: 3.3 Consensus size: 36
70855 AGGCAAAAAA
70865 AATTAAAAAAT-TCCAAGTTAATTAAATGTCAAAGTT
1 AATTAAAAAATCT-CAAGTTAATTAAATGTCAAAGTT
* * * * * ***
70901 AATTAAAAAATGCTCTA-TCAACTGAGATGAACAGGAAAAAA
1 AATTAAAAAAT-CTCAAGTTAA-TTAAATG-TC---AAAGTT
70942 AATTAAAAAATCTCAAGTTAATTAAATGTCAAAGTT
1 AATTAAAAAATCTCAAGTTAATTAAATGTCAAAGTT
70978 AATTAAAAAA
1 AATTAAAAAA
70988 ATATATTTTC
Statistics
Matches: 63, Mismatches: 16, Indels: 16
0.66 0.17 0.17
Matches are distributed among these distances:
36 27 0.43
37 7 0.11
38 2 0.03
39 1 0.02
40 9 0.14
41 17 0.27
ACGTcount: A:0.54, C:0.09, G:0.10, T:0.28
Consensus pattern (36 bp):
AATTAAAAAATCTCAAGTTAATTAAATGTCAAAGTT
Found at i:70989 original size:78 final size:78
Alignment explanation
Indices: 70833--70987 Score: 251
Period size: 77 Copynumber: 2.0 Consensus size: 78
70823 AAGAGCATTG
* *
70833 TGCTCTACCAACTAAGCTGGACAGGCAAAAAAAATTAAAAAATTCCAAGTTAATTAAATGTCAAA
1 TGCTCTACCAACTAAGATGAACAGGCAAAAAAAATTAAAAAATTCCAAGTTAATTAAATGTCAAA
70898 GTTAATTAAAAAA
66 GTTAATTAAAAAA
* *
70911 TGCTCTATCAACTGAGATGAACAGG-AAAAAAAATTAAAAAA-TCTCAAGTTAATTAAATGTCAA
1 TGCTCTACCAACTAAGATGAACAGGCAAAAAAAATTAAAAAATTC-CAAGTTAATTAAATGTCAA
70974 AGTTAATTAAAAAA
65 AGTTAATTAAAAAA
70988 ATATATTTTC
Statistics
Matches: 72, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
76 2 0.03
77 49 0.68
78 21 0.29
ACGTcount: A:0.51, C:0.12, G:0.12, T:0.25
Consensus pattern (78 bp):
TGCTCTACCAACTAAGATGAACAGGCAAAAAAAATTAAAAAATTCCAAGTTAATTAAATGTCAAA
GTTAATTAAAAAA
Found at i:75657 original size:23 final size:24
Alignment explanation
Indices: 75620--75668 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
75610 ATAGAAAAAT
75620 AAATATTTAAATTTAA-AATATAA
1 AAATATTTAAATTTAATAATATAA
**
75643 AAATATTTATTTTTAATTAATATAA
1 AAATATTTAAATTTAA-TAATATAA
75668 A
1 A
75669 CTCTAATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 14 0.64
25 8 0.36
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (24 bp):
AAATATTTAAATTTAATAATATAA
Found at i:80783 original size:12 final size:11
Alignment explanation
Indices: 80755--80795 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
80745 TAAAAAAATA
* *
80755 AATAATATAAA
1 AATAATACAAG
80766 AATAATACAAG
1 AATAATACAAG
80777 TAATAATACAAG
1 -AATAATACAAG
80789 AATAATA
1 AATAATA
80796 AAAAGAAAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
11 16 0.59
12 11 0.41
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.24
Consensus pattern (11 bp):
AATAATACAAG
Found at i:80898 original size:12 final size:12
Alignment explanation
Indices: 80876--80920 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
80866 GAATAAAAGG
80876 AAAATATAATAGT
1 AAAA-ATAATAGT
*
80889 AAAAATAATAAT
1 AAAAATAATAGT
*
80901 AAATATAATAGT
1 AAAAATAATAGT
*
80913 AATAATAA
1 AAAAATAA
80921 AAATGCAAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
12 23 0.85
13 4 0.15
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (12 bp):
AAAAATAATAGT
Found at i:81536 original size:37 final size:37
Alignment explanation
Indices: 81495--81599 Score: 138
Period size: 37 Copynumber: 2.8 Consensus size: 37
81485 GTGCTTGTGG
* * *
81495 ATCCTATCTTTAGGAGTTTAAATCATAGTAGAACTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAACTCT
* * *
81532 ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAATTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAACTCT
* *
81569 ATCATATTTTTATGAGTTTGAATCCTAGTAG
1 ATCCTATTTTTAGGAGTTTGAATCCTAGTAG
81600 GATGAAAAGG
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.41
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTGAATCCTAGTAGAACTCT
Found at i:82810 original size:106 final size:106
Alignment explanation
Indices: 82502--83875 Score: 2050
Period size: 106 Copynumber: 13.0 Consensus size: 106
82492 GCATTGTTCC
* * ** * *
82502 GAGTCCAATATCCTCCG-TCGTGAAGTTGAAATTGGCTCTGGAACCGGGAAATTGTTTGTTGACA
1 GAGTCCAATATCCTTCGCT-GTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACA
* * * *
82566 ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTT
65 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
82608 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTG-AA-T--GAA-AT-TTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
** * * *
82667 TTAGCAG-CCCTTTCGTCGTGAAGTTGAGCTTGTGTTGTCTTG
66 CCAGCGGTCCC-TTCGTCGTGAAGTTGAACTTGCGTTGTC-TG
* * * * *
82709 G-GTCTAAGATCCTTTGCTGAGAACTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
* *
82773 CCAGCGGTCCCTTCGTTGTGAAGTTGAACTTGCGTTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
82814 GAGTCCAATATCCTACGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
82879 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * * *
82920 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTATTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
* *
82985 CCAGCGGTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
83026 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCT-AAATTAGGAAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
83090 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
83131 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTATTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
*
83196 CCAGCGGTCCCTTCTTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
83237 GAGTCCAATATCCTTCGTTGTGAAGTTAAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
*
83302 CCAGCGGTCCCTTCGTTGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
83343 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTAAAATTGGGAAGTTTTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
83408 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
83449 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
83514 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
83555 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGAAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
* * *
83620 CCAGCGGTCCCTTCGTCGTCAAGTTGAACTTGTGTTATCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
*
83661 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
*
83726 CCAGCGGTCCATTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * * * *
83767 GAGTCCAACATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGAAAATTG-TTGTTGTCAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
* * * *
83831 CCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
83872 GAGT
1 GAGT
83876 GACACGATAT
Statistics
Matches: 1159, Mismatches: 97, Indels: 25
0.90 0.08 0.02
Matches are distributed among these distances:
99 3 0.00
100 72 0.06
101 5 0.00
102 4 0.00
104 3 0.00
105 151 0.13
106 917 0.79
107 4 0.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (106 bp):
GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:84726 original size:22 final size:22
Alignment explanation
Indices: 84700--84754 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
84690 TTATGTTTGG
84700 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
84722 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
*
84744 TCAAAAGTTTG
1 TCAAAGGTTTG
84755 ATGGGGTAGC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.25, C:0.13, G:0.25, T:0.36
Consensus pattern (22 bp):
TCAAAGGTTTGGCATTTGATGC
Found at i:85397 original size:15 final size:15
Alignment explanation
Indices: 85379--85424 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
85369 ATTTTTATTC
85379 TTTCTTTTTTTTTGT
1 TTTCTTTTTTTTTGT
*
85394 TTTCTTCTTTTTTGT
1 TTTCTTTTTTTTTGT
*
85409 TCTTTTTTTGTTTTTG
1 T-TTCTTTT-TTTTTG
85425 CCATTTTTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
15 15 0.58
16 5 0.19
17 6 0.23
ACGTcount: A:0.00, C:0.09, G:0.09, T:0.83
Consensus pattern (15 bp):
TTTCTTTTTTTTTGT
Found at i:85431 original size:26 final size:26
Alignment explanation
Indices: 85385--85437 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
85375 ATTCTTTCTT
* * *
85385 TTTTTTTGTTTTCTTCTTTTTTGTTC
1 TTTTTTTGTTTTCTCCATTTTTATTC
85411 TTTTTTTGTTTT-TGCCATTTTTATTC
1 TTTTTTTGTTTTCT-CCATTTTTATTC
85437 T
1 T
85438 GATTGAATCT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.04, C:0.11, G:0.08, T:0.77
Consensus pattern (26 bp):
TTTTTTTGTTTTCTCCATTTTTATTC
Found at i:88840 original size:19 final size:19
Alignment explanation
Indices: 88807--88843 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
88797 TTCAGATGAT
88807 GGAAATAAAATAAAAGAGA
1 GGAAATAAAATAAAAGAGA
88826 GGAAA-AAAATGAAAAGAG
1 GGAAATAAAAT-AAAAGAG
88844 TTAGTAAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.68, C:0.00, G:0.24, T:0.08
Consensus pattern (19 bp):
GGAAATAAAATAAAAGAGA
Found at i:89536 original size:16 final size:16
Alignment explanation
Indices: 89517--89569 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
89507 CCATAACCCC
89517 TATCACACATATATCA
1 TATCACACATATATCA
** * *
89533 TATCATGCACACATCA
1 TATCACACATATATCA
89549 TATCACACATCATATACA
1 TATCACACAT-ATAT-CA
89567 TAT
1 TAT
89570 ATCACATACA
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
16 19 0.70
17 3 0.11
18 5 0.19
ACGTcount: A:0.42, C:0.26, G:0.02, T:0.30
Consensus pattern (16 bp):
TATCACACATATATCA
Found at i:89768 original size:23 final size:23
Alignment explanation
Indices: 89742--89810 Score: 95
Period size: 23 Copynumber: 3.0 Consensus size: 23
89732 CACCACAGCT
*
89742 CGTATAATTGCACCGAAGTGCCA
1 CGTAGAATTGCACCGAAGTGCCA
*
89765 CGTAGAATTGCACC-AGAGTGCCG
1 CGTAGAATTGCACCGA-AGTGCCA
*
89788 CGTAGAATTGCACCGTAGTGCCA
1 CGTAGAATTGCACCGAAGTGCCA
89811 TATAATAATG
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
22 1 0.03
23 39 0.98
ACGTcount: A:0.28, C:0.26, G:0.26, T:0.20
Consensus pattern (23 bp):
CGTAGAATTGCACCGAAGTGCCA
Found at i:89996 original size:103 final size:102
Alignment explanation
Indices: 89826--90037 Score: 379
Period size: 103 Copynumber: 2.1 Consensus size: 102
89816 TAATGTCCAT
* *
89826 AAGGACCAATATCATTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTCACCAG
1 AAGGACCAATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCAG
89891 ACTTCACACATGTTCCAAAGAATACATATATGTCCCG
66 ACTTCACACATGTTCCAAAGAATACATATATGTCCCG
*
89928 AAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCA-ATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
*
89993 GACTTCACACATGTTCCAAATAATACATATATGTCCCG
65 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
90031 AAGGACC
1 AAGGACC
90038 GCGCAGACCC
Statistics
Matches: 105, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
102 8 0.08
103 97 0.92
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (102 bp):
AAGGACCAATATCATTCCTTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCAG
ACTTCACACATGTTCCAAAGAATACATATATGTCCCG
Found at i:94545 original size:16 final size:16
Alignment explanation
Indices: 94526--94578 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
94516 CCATAACCCC
94526 TATCACACATATATCA
1 TATCACACATATATCA
** *
94542 TATCATGCATACATCA
1 TATCACACATATATCA
94558 TATCACACATCATATACA
1 TATCACACAT-ATAT-CA
94576 TAT
1 TAT
94579 ATCACATACA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
16 21 0.72
17 3 0.10
18 5 0.17
ACGTcount: A:0.42, C:0.25, G:0.02, T:0.32
Consensus pattern (16 bp):
TATCACACATATATCA
Found at i:94587 original size:34 final size:32
Alignment explanation
Indices: 94526--94589 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 32
94516 CCATAACCCC
*
94526 TATCACACATATATCATATCATGCATACATCA
1 TATCACACATATATCATATCATACATACATCA
94558 TATCACACATCATATACATAT-ATCACATACAT
1 TATCACACAT-ATAT-CATATCAT-ACATACAT
94590 TGTTCTCATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
32 10 0.36
33 6 0.21
34 12 0.43
ACGTcount: A:0.42, C:0.25, G:0.02, T:0.31
Consensus pattern (32 bp):
TATCACACATATATCATATCATACATACATCA
Found at i:94777 original size:23 final size:23
Alignment explanation
Indices: 94751--94842 Score: 121
Period size: 23 Copynumber: 4.0 Consensus size: 23
94741 CACCACAGCT
* *
94751 CGTATAATTGCACCGAAGTGCCA
1 CGTAGAATTGCACCGGAGTGCCA
* *
94774 CGTAGAATTGCACTGGAGTGCCG
1 CGTAGAATTGCACCGGAGTGCCA
* *
94797 CGTAGAATTGCACTGGAGTGCCG
1 CGTAGAATTGCACCGGAGTGCCA
*
94820 CGTAGAATTGCACCGTAGTGCCA
1 CGTAGAATTGCACCGGAGTGCCA
94843 TATAATAATG
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 62 1.00
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (23 bp):
CGTAGAATTGCACCGGAGTGCCA
Found at i:94983 original size:103 final size:103
Alignment explanation
Indices: 94858--95070 Score: 390
Period size: 103 Copynumber: 2.1 Consensus size: 103
94848 TAATGTCCAT
* * *
94858 AAGGACCACATATCATTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAAAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
94923 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
*
94961 AAGGACCACATATCATTCCTTAAAAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCA
1 AAGGACCACATATCATTCCTTAAAAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
95026 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
66 GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
95064 AAGGACC
1 AAGGACC
95071 GCGTAAACCC
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
103 106 1.00
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.26
Consensus pattern (103 bp):
AAGGACCACATATCATTCCTTAAAAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCA
GACTTCACACATGTTCCAAAGAATACATATATGTCCCG
Found at i:101585 original size:15 final size:15
Alignment explanation
Indices: 101565--101594 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
101555 CGTAGGACCC
101565 CTACATCCCGAAGGA
1 CTACATCCCGAAGGA
101580 CTACATCCCGAAGGA
1 CTACATCCCGAAGGA
101595 TTATTATACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.33, G:0.20, T:0.13
Consensus pattern (15 bp):
CTACATCCCGAAGGA
Found at i:101746 original size:23 final size:26
Alignment explanation
Indices: 101709--101761 Score: 85
Period size: 23 Copynumber: 2.2 Consensus size: 26
101699 TTCTCTTGTG
101709 ATCATGTATCTCATATCAC-T-TCAT
1 ATCATGTATCTCATATCACATGTCAT
101733 ATCATGT-TCTCATATCACATGTCAT
1 ATCATGTATCTCATATCACATGTCAT
101758 ATCA
1 ATCA
101762 CATGAACATA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
23 11 0.41
24 8 0.30
25 8 0.30
ACGTcount: A:0.30, C:0.25, G:0.06, T:0.40
Consensus pattern (26 bp):
ATCATGTATCTCATATCACATGTCAT
Found at i:102181 original size:64 final size:62
Alignment explanation
Indices: 102073--102298 Score: 222
Period size: 64 Copynumber: 3.5 Consensus size: 62
102063 TAATGAAGGT
* * ** ** *
102073 ATGCATCGATGCATTA-CTGATGCATCGGTGCATAAAAGGTATTCGATGTATTATTATTGTTGGG
1 ATGCATCGATGCACTACCT-ATGCATCGATGCACCAATTGCATTCGATGT-TTATTATT-TTGGG
* *
102137 ATGCATCGATGCACTCCCTATGCATCGATGCACCAATTGCATTCGATGTTTCATTATTAATGGG
1 ATGCATCGATGCACTACCTATGCATCGATGCACCAATTGCATTCGATGTTT-ATTATT-TTGGG
* ** * *
102201 ATGCATCGATGCACTACTTATGCATCGATGCATGAATTGCATTCGATGTTT-TTATTTTAAAAGA
1 ATGCATCGATGCACTACCTATGCATCGATGCACCAATTGCATTCGATGTTTATTATTTT---GGG
* *
102265 ATGCATCGATGCACTACCAATGCATCGATACACC
1 ATGCATCGATGCACTACCTATGCATCGATGCACC
102299 TTTAAACAAT
Statistics
Matches: 135, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
61 1 0.01
62 5 0.04
63 2 0.01
64 125 0.93
65 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.33
Consensus pattern (62 bp):
ATGCATCGATGCACTACCTATGCATCGATGCACCAATTGCATTCGATGTTTATTATTTTGGG
Found at i:108500 original size:15 final size:15
Alignment explanation
Indices: 108480--108509 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
108470 CGTAGGACCT
108480 CTACATCCCGAAGGA
1 CTACATCCCGAAGGA
108495 CTACATCCCGAAGGA
1 CTACATCCCGAAGGA
108510 TTATTATACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.33, G:0.20, T:0.13
Consensus pattern (15 bp):
CTACATCCCGAAGGA
Found at i:108673 original size:12 final size:12
Alignment explanation
Indices: 108656--108691 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
108646 TATCATGTTC
*
108656 TCATATCATATG
1 TCATATCACATG
*
108668 TCATATCACATA
1 TCATATCACATG
108680 TCATATCACATG
1 TCATATCACATG
108692 AACATATATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.36, C:0.22, G:0.06, T:0.36
Consensus pattern (12 bp):
TCATATCACATG
Found at i:109131 original size:64 final size:64
Alignment explanation
Indices: 109063--109205 Score: 189
Period size: 64 Copynumber: 2.2 Consensus size: 64
109053 TATTGTTGGG
** * **
109063 ATGCATCGATGCACCAATTGCATTCGATG-TTTCATTATTAATGGGATGCATCGATGCACTACTT
1 ATGCATCGATGCACCAATTGCATTCGATGTTTTCATT-TTAAAAGAATGCATCGATGCACTACCA
** *
109127 ATGCATCGATGCATGAATTGCATTCGATGTTTTTATTTTAAAAGAATGCATCGATGCACTACCA
1 ATGCATCGATGCACCAATTGCATTCGATGTTTTCATTTTAAAAGAATGCATCGATGCACTACCA
*
109191 ATGCATCGATACACC
1 ATGCATCGATGCACC
109206 TTTAAATAAT
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
64 61 0.91
65 6 0.09
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.33
Consensus pattern (64 bp):
ATGCATCGATGCACCAATTGCATTCGATGTTTTCATTTTAAAAGAATGCATCGATGCACTACCA
Found at i:115492 original size:23 final size:26
Alignment explanation
Indices: 115455--115523 Score: 85
Period size: 24 Copynumber: 2.8 Consensus size: 26
115445 TTCTCTTGTG
115455 ATCATGTATCTCATATCAC-T-TCAT
1 ATCATGTATCTCATATCACATGTCAT
115479 ATCATGT-TCTCATATCACATGTCAT
1 ATCATGTATCTCATATCACATGTCAT
* *
115504 ATCA--CATATCATATCACATG
1 ATCATGTATCTCATATCACATG
115524 AACATATATA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
23 11 0.28
24 21 0.52
25 8 0.20
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.38
Consensus pattern (26 bp):
ATCATGTATCTCATATCACATGTCAT
Found at i:115505 original size:12 final size:12
Alignment explanation
Indices: 115488--115523 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
115478 TATCATGTTC
115488 TCATATCACATG
1 TCATATCACATG
*
115500 TCATATCACATA
1 TCATATCACATG
115512 TCATATCACATG
1 TCATATCACATG
115524 AACATATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (12 bp):
TCATATCACATG
Found at i:115938 original size:64 final size:64
Alignment explanation
Indices: 115830--115975 Score: 170
Period size: 64 Copynumber: 2.3 Consensus size: 64
115820 TAATGAAGGT
* * * **
115830 ATGCATCGATGCACTACTGATGCATCGGTGCATAAAAGGTATTCGATGTATT-ATTATTGTTGGG
1 ATGCATCGATGCACTACTGATGCATCGATGCACAAAAGGCATTCGATGT-TTCATTATTAATGGG
* * **
115894 ATGCATCGATGCACTCCCT-ATGCATCGATGCACCAATTGCATTCGATGTTTCATTATTAATGGG
1 ATGCATCGATGCACT-ACTGATGCATCGATGCACAAAAGGCATTCGATGTTTCATTATTAATGGG
*
115958 ATGCATCAATGCACTACT
1 ATGCATCGATGCACTACT
115976 TATATATCAA
Statistics
Matches: 69, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
63 4 0.06
64 63 0.91
65 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.33
Consensus pattern (64 bp):
ATGCATCGATGCACTACTGATGCATCGATGCACAAAAGGCATTCGATGTTTCATTATTAATGGG
Found at i:115989 original size:64 final size:64
Alignment explanation
Indices: 115870--115989 Score: 152
Period size: 64 Copynumber: 1.9 Consensus size: 64
115860 CATAAAAGGT
** * * * *
115870 ATTCGATGTATTATTATTGTTGGGATGCATCGATGCACTCCCTATGCATCGATGCACCAATTGC
1 ATTCGATGTATTATTATTAATGGGATGCATCAATGCACTACCTATACATCAATGCACCAATTGC
* *
115934 ATTCGATGT-TTCATTATTAATGGGATGCATCAATGCACTACTTATATATCAATGCA
1 ATTCGATGTATT-ATTATTAATGGGATGCATCAATGCACTACCTATACATCAATGCA
115990 TAAAAGTTTA
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
63 2 0.04
64 45 0.96
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (64 bp):
ATTCGATGTATTATTATTAATGGGATGCATCAATGCACTACCTATACATCAATGCACCAATTGC
Found at i:117560 original size:23 final size:23
Alignment explanation
Indices: 117511--117576 Score: 69
Period size: 23 Copynumber: 2.9 Consensus size: 23
117501 GAGTCGAGGG
*
117511 TTCTACGCGGTCCTTCTGGAAAA
1 TTCTACGCGGTCCTTCGGGAAAA
* * *
117534 TTCTACGTGGTCCTTCGGGATAT
1 TTCTACGCGGTCCTTCGGGAAAA
** *
117557 TTCTATACGATCCTTCGGGA
1 TTCTACGCGGTCCTTCGGGA
117577 CAATATTATA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (23 bp):
TTCTACGCGGTCCTTCGGGAAAA
Found at i:117628 original size:24 final size:24
Alignment explanation
Indices: 117601--117676 Score: 125
Period size: 24 Copynumber: 3.2 Consensus size: 24
117591 CATTCGCGAC
* *
117601 ATTTCTATGTGGCACTTCGGTGCA
1 ATTTCTACGCGGCACTTCGGTGCA
*
117625 ATTTCTACGCGGCACTTCAGTGCA
1 ATTTCTACGCGGCACTTCGGTGCA
117649 ATTTCTACGCGGCACTTCGGTGCA
1 ATTTCTACGCGGCACTTCGGTGCA
117673 ATTT
1 ATTT
117677 ATATGAGTTG
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.34
Consensus pattern (24 bp):
ATTTCTACGCGGCACTTCGGTGCA
Found at i:119816 original size:22 final size:21
Alignment explanation
Indices: 119784--119827 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 21
119774 TTTTTAATTA
119784 TAAAAAATTA-TGTAAAGTTT
1 TAAAAAATTATTGTAAAGTTT
*
119804 TAAAAAACTTTATTGTAATGTTT
1 TAAAAAA--TTATTGTAAAGTTT
119827 T
1 T
119828 TTTTGGTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 7 0.35
22 3 0.15
23 10 0.50
ACGTcount: A:0.43, C:0.02, G:0.09, T:0.45
Consensus pattern (21 bp):
TAAAAAATTATTGTAAAGTTT
Found at i:119883 original size:27 final size:28
Alignment explanation
Indices: 119853--119911 Score: 93
Period size: 27 Copynumber: 2.1 Consensus size: 28
119843 CTCTAGTTCG
* *
119853 ATATTTAGTTAATCAAACTTG-GAAAAT
1 ATATTTAATTAATCAAACTTGCAAAAAT
119880 ATATTTAATTAATCAAACTTGCAAAAAT
1 ATATTTAATTAATCAAACTTGCAAAAAT
119908 ATAT
1 ATAT
119912 ATGTCACTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 20 0.69
28 9 0.31
ACGTcount: A:0.47, C:0.08, G:0.07, T:0.37
Consensus pattern (28 bp):
ATATTTAATTAATCAAACTTGCAAAAAT
Found at i:120248 original size:14 final size:15
Alignment explanation
Indices: 120229--120262 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
120219 CAATAAACTT
*
120229 GAAGATGATAATA-A
1 GAAGATGAAAATAGA
120243 GAAGATGAAAATAGA
1 GAAGATGAAAATAGA
120258 GAAGA
1 GAAGA
120263 AGAAGAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.59, C:0.00, G:0.26, T:0.15
Consensus pattern (15 bp):
GAAGATGAAAATAGA
Found at i:124598 original size:20 final size:21
Alignment explanation
Indices: 124568--124607 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
124558 TTGATAAAAA
124568 TTACTTAAAATATTATTATTT
1 TTACTTAAAATATTATTATTT
124589 TTAC-TAAAATATTATTATT
1 TTACTTAAAATATTATTATT
124608 AGGCATTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (21 bp):
TTACTTAAAATATTATTATTT
Found at i:130994 original size:106 final size:106
Alignment explanation
Indices: 130809--132457 Score: 2520
Period size: 106 Copynumber: 15.7 Consensus size: 106
130799 GCTAGGAACT
*
130809 GCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTG
1 GCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTG
*
130874 GACTCCAGACAACGCAAGTTCAACTTCATGACGAAGGGACC
66 GACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACC
* * *
130915 GCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGAATATTG
1 GCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTG
*
130980 GACTCCAGACAACGCAAGTTCAACTTCACGATGAAGGGACC
66 GACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACC
* *
131021 GCTGGTTGTCAACAAACAACTTCCCAATTTCAAAGCCAATTTCAACTTCACAGCGAAGGATATTA
1 GCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTG
*
131086 GACTCGAGACAACGCAAGTTCAACTTCACGACGAAGGGACC
66 GACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACC
* * ** * * *
131127 GCTAGTTGTCAACAAACAATTTCCCAATTTTGGAGCCAATTTTAACTCCACAGCGAAAGATATTG
1 GCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTG
*
131192 GACTCCAGACAACGCAAGTTCAACTTAACGACGAAGGGACC
66 GACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACC
*
131233 GCTGGTTGTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTG
1 GCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTG
131298 GACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACC
66 GACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACC
* * *
131339 ACTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTG
1 GCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTG
131404 GACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACC
66 GACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACC
* *
131445 GCTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTG
1 GCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTG
*
131510 GACTCCAGACAACGCAAGTTCAACTTCACAACGAAGGGACC
66 GACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACC
* *
131551 GCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTG
1 GCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTG
131616 GACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACC
66 GACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACC
* *
131657 GCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTG
1 GCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTG
*
131722 GACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGGACC
66 GACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACC
* * *
131763 GCTAGTTGTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAATGATATTG
1 GCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTG
* * * *
131828 GACTCAAGAAAACACAACTTCAACTTCACGACGAAGGGACC
66 GACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACC
* *
131869 ACTGGTTGTCAATAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTG
1 GCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTG
*
131934 GACTCCAGACAACGCAAGTTCAATTTCACGACGAAGGGACC
66 GACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACC
* * * *
131975 GCTGGTTGTCAACAAACAACTTCTCAATTTTAGAGCCAATTTCAACTTCACAACGAAGGATATTA
1 GCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTG
132040 GACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACC
66 GACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACC
* *
132081 GCTGGTTGTCAATAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGC-ATAGGATATT
1 GCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGA-AGGATATT
* * *
132145 GGACTCAAGACAACGCAAGTTCAATTTCACGACGAAGGGATC
65 GGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACC
* * * * *
132187 GCTGGTTGTCAATAAACAACTTTCCAATTTCATAGCCAATTTCAACTTC-TAGCGAAGGATCTTG
1 GCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTG
* * * * *
132251 AAC-CCAAGGCAACACAAGCTCAACTTCACGACGAAGAGG-CG
66 GACTCC-AGACAACGCAAGTTCAACTTCACGACGAAG-GGACC
* * *
132292 GCTGATTGTCAAC-AA-AA-TT-TC-A-TTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTG
1 GCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTG
* * *
132351 GACTCGAGACAACACAAGTTCAA----ACAACGAAGGGA-C
66 GACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACC
* ** * *
132387 GACTGGTTGTCAACAAACAATTTCCCGGTTCCAGAGCCAATTTCAACTTCAC-GACGGAGGATAT
1 G-CTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAG-CGAAGGATAT
132451 TGGACTC
64 TGGACTC
132458 AGAACAGTGC
Statistics
Matches: 1419, Mismatches: 109, Indels: 34
0.91 0.07 0.02
Matches are distributed among these distances:
95 3 0.00
96 19 0.01
97 2 0.00
98 2 0.00
99 21 0.01
100 32 0.02
101 3 0.00
102 39 0.03
103 2 0.00
104 3 0.00
105 51 0.04
106 1242 0.88
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (106 bp):
GCTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTG
GACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACC
Found at i:133246 original size:37 final size:37
Alignment explanation
Indices: 133184--133288 Score: 147
Period size: 37 Copynumber: 2.8 Consensus size: 37
133174 CCTTTTCGTC
* *
133184 CTACTAGAATTCAAACTCCTAAAAATAGGATAGAATT
1 CTACTAGGATTTAAACTCCTAAAAATAGGATAGAATT
* * *
133221 TTGCTAGGATTTAAACTCCTAAAAATAGGATAGAGTT
1 CTACTAGGATTTAAACTCCTAAAAATAGGATAGAATT
* *
133258 CTACTATGATTTAAACTCCTAAAGATAGGAT
1 CTACTAGGATTTAAACTCCTAAAAATAGGAT
133289 CCACAAGCAC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.30
Consensus pattern (37 bp):
CTACTAGGATTTAAACTCCTAAAAATAGGATAGAATT
Found at i:134162 original size:22 final size:20
Alignment explanation
Indices: 134113--134158 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
134103 AATATTATAC
134113 ATATATTTTTCTATTATTTT
1 ATATATTTTTCTATTATTTT
* *
134133 CTATATTTTT-TATTATCATT
1 ATATATTTTTCTATTAT-TTT
134153 ATATAT
1 ATATAT
134159 ATTTATTTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (20 bp):
ATATATTTTTCTATTATTTT
Found at i:134492 original size:32 final size:33
Alignment explanation
Indices: 134429--134496 Score: 86
Period size: 32 Copynumber: 2.1 Consensus size: 33
134419 TCTTCATTTA
* *
134429 ATTTATTAATTTATATATATTTACTTATTTATT
1 ATTTATTAATATATATATATTTACTAATTTATT
*
134462 ATTTATT-ATATATATATATTT-GTAATTTTATT
1 ATTTATTAATATATATATATTTACTAA-TTTATT
134494 ATT
1 ATT
134497 ATTTTGTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
31 2 0.06
32 22 0.71
33 7 0.23
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.63
Consensus pattern (33 bp):
ATTTATTAATATATATATATTTACTAATTTATT
Found at i:134507 original size:12 final size:11
Alignment explanation
Indices: 134486--134572 Score: 68
Period size: 12 Copynumber: 7.5 Consensus size: 11
134476 TATATTTGTA
*
134486 ATTTTATTATT
1 ATTTTTTTATT
134497 ATTTTGTTTATTT
1 ATTTT-TTTA-TT
134510 ATTTTCTTT-TT
1 ATTTT-TTTATT
*
134521 CTTTTTTTATAT
1 ATTTTTTTAT-T
*
134533 ATTTTATTATTT
1 ATTTTTTTA-TT
134545 ATTTTTTTACTT
1 ATTTTTTTA-TT
* *
134557 ATTATTTTATC
1 ATTTTTTTATT
134568 ATTTT
1 ATTTT
134573 ATTAATTTGT
Statistics
Matches: 61, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
10 3 0.05
11 17 0.28
12 30 0.49
13 11 0.18
ACGTcount: A:0.20, C:0.05, G:0.01, T:0.75
Consensus pattern (11 bp):
ATTTTTTTATT
Found at i:134535 original size:23 final size:24
Alignment explanation
Indices: 134486--134571 Score: 86
Period size: 24 Copynumber: 3.5 Consensus size: 24
134476 TATATTTGTA
*
134486 ATTTTATTA-TTATTTTGTTTATTT
1 ATTTTATTATTTATTTT-TTTATAT
* *
134510 ATTTTCTT-TTTCTTTTTTTATAT
1 ATTTTATTATTTATTTTTTTATAT
134533 ATTTTATTATTTATTTTTTTACTTATT
1 ATTTTATTATTTATTTTTTTA--TA-T
*
134560 ATTTTATCATTT
1 ATTTTATTATTT
134572 TATTAATTTG
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
23 13 0.25
24 24 0.47
26 2 0.04
27 12 0.24
ACGTcount: A:0.20, C:0.05, G:0.01, T:0.74
Consensus pattern (24 bp):
ATTTTATTATTTATTTTTTTATAT
Found at i:134543 original size:8 final size:8
Alignment explanation
Indices: 134430--134576 Score: 52
Period size: 8 Copynumber: 18.9 Consensus size: 8
134420 CTTCATTTAA
*
134430 TTTATTAA
1 TTTATTAT
134438 TTTATATAT
1 TTTAT-TAT
134447 ATTTACTTA-
1 -TTTA-TTAT
134456 TTTATTA-
1 TTTATTAT
134463 TTTATTAT
1 TTTATTAT
*
134471 ATATATATAT
1 -TTTAT-TAT
134481 TTGTA--AT
1 TT-TATTAT
134488 TTTATTAT
1 TTTATTAT
*
134496 TATT-TT-G
1 T-TTATTAT
134503 TTTATTTAT
1 TTTA-TTAT
*
134512 TTTCTT-T
1 TTTATTAT
134519 TTCT-TT-T
1 TT-TATTAT
134526 TTTATATAT
1 TTTAT-TAT
134535 TTTATTA-
1 TTTATTAT
134542 TTTA-T-T
1 TTTATTAT
134548 TTT-TTA-
1 TTTATTAT
*
134554 CTTATTAT
1 TTTATTAT
*
134562 TTTATCAT
1 TTTATTAT
134570 TTTATTA
1 TTTATTA
134577 ATTTGTTTTT
Statistics
Matches: 107, Mismatches: 10, Indels: 44
0.66 0.06 0.27
Matches are distributed among these distances:
6 12 0.11
7 31 0.29
8 34 0.32
9 18 0.17
10 11 0.10
11 1 0.01
ACGTcount: A:0.26, C:0.03, G:0.01, T:0.69
Consensus pattern (8 bp):
TTTATTAT
Found at i:134566 original size:24 final size:23
Alignment explanation
Indices: 134430--134559 Score: 86
Period size: 24 Copynumber: 5.4 Consensus size: 23
134420 CTTCATTTAA
* *
134430 TTTATTAATTTATATATATTTACTTA
1 TTTATT-ATTT-TAT-TATTTATTTT
* *
134456 TTTATTA-TTTATTATATATATATA
1 TTTATTATTTTATTAT-T-TATTTT
* *
134480 TTTGTAATTTTATTA-TTATTTT
1 TTTATTATTTTATTATTTATTTT
* *
134502 GTTTATTTATTTTCTT-TTTCTTTT
1 -TTTA-TTATTTTATTATTTATTTT
134526 TTTATATATTTTATTATTTATTTT
1 TTTAT-TATTTTATTATTTATTTT
134550 TTTACTTATT
1 TTTA-TTATT
134560 ATTTTATCAT
Statistics
Matches: 83, Mismatches: 12, Indels: 20
0.72 0.10 0.17
Matches are distributed among these distances:
22 8 0.10
23 20 0.24
24 40 0.48
25 9 0.11
26 6 0.07
ACGTcount: A:0.25, C:0.03, G:0.02, T:0.70
Consensus pattern (23 bp):
TTTATTATTTTATTATTTATTTT
Found at i:134572 original size:35 final size:33
Alignment explanation
Indices: 134487--134588 Score: 91
Period size: 35 Copynumber: 2.9 Consensus size: 33
134477 ATATTTGTAA
* * *
134487 TTTTATTAT-TATTTTGTTTATTTATTTTCTTTTTC
1 TTTTTTTATATATTTT-ATTATTTA-TTT-TTTTAC
134522 TTTTTTTATATATTTTATTATTTATTTTTTTAC
1 TTTTTTTATATATTTTATTATTTATTTTTTTAC
*
134555 TTATTATTT-TATCATTTTATTAATTTGTTTTTTT
1 TT-TT-TTTATAT-ATTTTATT-ATTTATTTTTTT
134589 CATTTAATTT
Statistics
Matches: 58, Mismatches: 4, Indels: 9
0.82 0.06 0.13
Matches are distributed among these distances:
33 7 0.12
34 8 0.14
35 26 0.45
36 17 0.29
ACGTcount: A:0.19, C:0.04, G:0.02, T:0.75
Consensus pattern (33 bp):
TTTTTTTATATATTTTATTATTTATTTTTTTAC
Found at i:137004 original size:161 final size:161
Alignment explanation
Indices: 136739--137062 Score: 648
Period size: 161 Copynumber: 2.0 Consensus size: 161
136729 ACTCGTTGTG
136739 AAATAGATCTCACATTTTTTTCCTTCTATGATAGAAAAAGAGCAATGTTATGCCTTCTGCTAACT
1 AAATAGATCTCACATTTTTTTCCTTCTATGATAGAAAAAGAGCAATGTTATGCCTTCTGCTAACT
136804 AGATTCAGCTTTGGTTTCAACCGACAATACTTGATAGTTTCGTTTGTGTTGCATTATGGTAATGT
66 AGATTCAGCTTTGGTTTCAACCGACAATACTTGATAGTTTCGTTTGTGTTGCATTATGGTAATGT
136869 TAAGTTTCACCTTTTGTTTTAATAGGAAAAT
131 TAAGTTTCACCTTTTGTTTTAATAGGAAAAT
136900 AAATAGATCTCACATTTTTTTCCTTCTATGATAGAAAAAGAGCAATGTTATGCCTTCTGCTAACT
1 AAATAGATCTCACATTTTTTTCCTTCTATGATAGAAAAAGAGCAATGTTATGCCTTCTGCTAACT
136965 AGATTCAGCTTTGGTTTCAACCGACAATACTTGATAGTTTCGTTTGTGTTGCATTATGGTAATGT
66 AGATTCAGCTTTGGTTTCAACCGACAATACTTGATAGTTTCGTTTGTGTTGCATTATGGTAATGT
137030 TAAGTTTCACCTTTTGTTTTAATAGGAAAAT
131 TAAGTTTCACCTTTTGTTTTAATAGGAAAAT
137061 AA
1 AA
137063 TGTGGCTAAT
Statistics
Matches: 163, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
161 163 1.00
ACGTcount: A:0.29, C:0.15, G:0.16, T:0.40
Consensus pattern (161 bp):
AAATAGATCTCACATTTTTTTCCTTCTATGATAGAAAAAGAGCAATGTTATGCCTTCTGCTAACT
AGATTCAGCTTTGGTTTCAACCGACAATACTTGATAGTTTCGTTTGTGTTGCATTATGGTAATGT
TAAGTTTCACCTTTTGTTTTAATAGGAAAAT
Found at i:148311 original size:23 final size:22
Alignment explanation
Indices: 148285--148345 Score: 52
Period size: 23 Copynumber: 2.6 Consensus size: 22
148275 CTCGTATAAA
*
148285 TGCACTGACGTGCCACGTAGAAT
1 TGCACTGA-GTGCCACATAGAAT
*
148308 TGCAAC-GAAGTGCCGCATAGAAT
1 TGC-ACTG-AGTGCCACATAGAAT
*
148331 TACACTGTAGTGCCA
1 TGCACTG-AGTGCCA
148346 TATAAAATGT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
22 2 0.07
23 25 0.83
24 3 0.10
ACGTcount: A:0.30, C:0.25, G:0.25, T:0.21
Consensus pattern (22 bp):
TGCACTGAGTGCCACATAGAAT
Found at i:148806 original size:2 final size:2
Alignment explanation
Indices: 148801--148903 Score: 172
Period size: 2 Copynumber: 52.0 Consensus size: 2
148791 CTTAAAACTC
*
148801 AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
148843 AT AT AT AT AT AT AT AT AT -T AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
148884 AT AT AT AC AT AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
148904 CTTTTAACTA
Statistics
Matches: 94, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
1 1 0.01
2 93 0.99
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:151518 original size:60 final size:60
Alignment explanation
Indices: 151424--151541 Score: 173
Period size: 60 Copynumber: 2.0 Consensus size: 60
151414 CCACGCTGTC
* * * *
151424 GACATTTAGGTCGAACAAGCTGGTAGTTGCATGCCTTCCCCTTGAACTTGAAGGCATCTT
1 GACATTGAGGTCGAACAAGCTCGTAGTTGAATGCCTCCCCCTTGAACTTGAAGGCATCTT
* * *
151484 GACATTGAGGTCGAAGAAGCTCGTAGTTGAATGCCTCCCCCTTTAGCTTGAAGGCATC
1 GACATTGAGGTCGAACAAGCTCGTAGTTGAATGCCTCCCCCTTGAACTTGAAGGCATC
151542 GTGTCAAATG
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
60 51 1.00
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.28
Consensus pattern (60 bp):
GACATTGAGGTCGAACAAGCTCGTAGTTGAATGCCTCCCCCTTGAACTTGAAGGCATCTT
Done.