Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009044.1 Hibiscus syriacus cultivar Beakdansim tig00112454_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88927

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
262--295
16
2.1
16
94
0
59
32
8
26
32
1.87
1042--1073
15
2.1
16
94
5
57
50
18
25
6
1.70
6441--6496
28
2.0
28
92
0
94
8
14
25
51
1.70
6441--6487
14
3.4
14
100
0
94
6
17
27
48
1.71
6840--6900
16
3.8
16
86
0
95
8
11
21
59
1.58
11385--11430
23
2.0
23
91
0
74
30
26
26
17
1.97
17388--17433
23
2.0
23
91
0
74
30
26
26
17
1.97
22064--22101
20
1.9
20
94
0
67
36
13
15
34
1.87
22130--22186
20
2.8
21
75
15
57
22
14
12
50
1.75
29020--29102
42
2.0
42
92
4
141
31
24
13
31
1.93
34856--34904
25
2.0
25
87
0
71
26
38
12
22
1.89
35151--35232
36
2.3
35
89
6
128
14
40
14
30
1.86
44298--44335
20
1.9
20
84
10
51
10
42
13
34
1.78
46363--46471
55
2.0
55
96
0
200
48
8
9
33
1.65
46963--47421
41
11.2
39
73
11
287
30
20
18
30
1.96
46963--47395
164
2.6
163
87
4
611
30
21
18
29
1.97
53287--53347
21
2.9
21
95
0
104
19
4
21
54
1.63
53482--53815
43
7.8
43
87
2
483
24
26
17
30
1.97
53482--53815
85
3.9
87
87
4
464
24
26
17
30
1.97
58773--58823
3
17.0
3
100
0
102
66
0
0
33
0.92
61453--61486
14
2.3
15
90
5
52
58
0
2
38
1.13
65606--65678
30
2.4
31
81
9
87
65
2
0
31
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65712--65745
10
3.4
10
91
0
59
29
0
35
35
1.58
71983--72062
3
26.7
3
89
0
124
35
1
0
63
1.02
72815--72843
13
2.2
13
100
0
58
0
31
62
6
1.22
73403--73438
19
1.9
19
94
5
65
22
0
5
72
1.05
84809--84855
1
47.0
1
86
0
67
93
0
6
0
0.34
85792--86495
52
13.7
52
94
3
1241
24
15
23
37
1.93
85792--86495
103
6.9
103
94
3
1228
24
15
23
37
1.93
87049--87814
110
6.9
112
90
4
1123
36
14
19
28
1.92
87049--87814
222
3.5
223
91
4
1189
36
14
19
28
1.92
88103--88177
3
25.7
3
86
5
109
36
1
0
62
1.04
88891--88919
13
2.2
13
100
0
58
0
31
62
6
1.22

Tables:   1

The End!