genome.fa.s9045.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009045.1 Hibiscus syriacus cultivar Beakdansim tig00112455_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72393

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424--452	13	2.2	13	100	0	58	0	31	62	6	1.22
997--1031	17	1.9	19	88	11	56	22	0	5	71	1.07
1742--1803	21	2.9	22	79	13	58	24	4	1	69	1.17
1797--1829	12	2.5	14	90	9	52	24	6	9	60	1.49
12308--12351	1	44.0	1	81	0	52	90	0	9	0	0.44
13289--14000	52	13.7	52	96	1	1295	24	15	23	36	1.93
13289--14000	206	3.4	208	97	0	1340	24	15	23	36	1.93
14559--15788	113	10.9	113	93	1	2011	36	14	19	28	1.92
14559--15794	451	2.7	452	94	1	2124	36	14	19	28	1.92
16080--16237	3	53.7	3	95	2	277	34	0	0	65	0.93
16985--17013	13	2.2	13	100	0	58	0	31	62	6	1.22
17573--17608	19	1.9	19	94	5	65	22	0	5	72	1.05
20043--20091	2	24.5	2	100	0	98	48	0	0	51	1.00
21522--21611	31	2.8	31	83	6	110	15	18	8	56	1.65
21520--21623	33	3.2	33	78	8	88	18	17	8	55	1.66
23405--23465	17	3.4	18	77	11	54	44	0	1	54	1.10
25192--25239	21	2.3	21	85	0	60	25	39	12	22	1.89
25243--25315	21	3.5	21	81	7	85	17	30	27	24	1.97
25834--25926	33	2.8	33	82	6	116	55	4	3	36	1.35
26328--27081	128	5.9	128	93	1	1226	32	19	24	23	1.98
27154--27194	8	5.2	8	82	5	57	36	29	0	34	1.58
27366--27981	309	2.0	303	97	1	1169	27	22	16	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34907--35030	62	2.0	63	91	1	205	40	10	16	32	1.83
35184--35237	28	1.9	28	85	7	74	46	25	0	27	1.53
35576--35609	12	3.1	11	88	12	52	58	0	41	0	0.98
35588--35635	20	2.4	20	82	0	60	62	2	33	2	1.18
37619--37664	18	2.5	19	82	6	51	65	2	6	26	1.28
37630--37676	14	3.4	14	82	5	51	65	0	4	29	1.11
39239--39284	21	2.2	21	84	0	56	58	2	0	39	1.10
39615--39663	20	2.5	20	82	0	71	6	26	0	67	1.14
53395--53495	39	2.5	41	81	12	111	32	21	17	27	1.96
53438--53674	83	2.9	83	81	2	271	29	16	20	32	1.95
53855--53969	41	2.8	41	78	1	122	36	16	21	25	1.94
55382--55406	13	1.9	13	100	0	50	36	16	24	24	1.94
61924--62345	221	1.9	223	89	0	659	44	13	15	26	1.83
61924--62345	111	3.8	111	91	0	630	44	13	15	26	1.83
62216--62850	182	3.5	182	92	1	1058	42	13	15	27	1.85
65172--65218	20	2.5	19	80	16	53	65	0	10	23	1.23
65316--65370	25	2.3	23	84	9	67	72	0	1	25	0.94
65302--65370	22	3.1	22	78	12	63	72	0	2	24	0.98
65316--65419	22	4.5	23	72	8	68	65	0	1	31	1.10
65304--65429	44	2.7	47	71	13	118	66	0	3	29	1.12
65514--65562	14	3.2	14	78	18	53	69	4	8	18	1.30
66077--66178	37	2.8	37	87	0	132	30	13	14	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66931--68206	106	12.0	106	93	0	2061	22	18	25	33	1.96
68709--68745	18	2.0	19	94	5	67	43	32	5	18	1.73
69160--69214	22	2.5	22	100	0	110	23	12	27	36	1.91
69808--69851	19	2.3	19	84	7	54	4	9	6	79	1.04
69820--69865	20	2.3	20	85	14	60	2	10	4	82	0.89
69845--69882	16	2.4	16	91	4	60	0	15	7	76	1.01
69837--69882	15	2.9	16	83	6	67	0	15	6	78	0.95

Tables:   1

The End!