Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009046.1 Hibiscus syriacus cultivar Beakdansim tig00112456_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48750

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1261--1347
44
2.0
44
97
0
165
35
22
18
22
1.95
4480--4513
15
2.3
15
100
0
68
26
26
29
17
1.98
9267--9465
84
2.4
84
81
5
237
32
13
16
37
1.88
9267--9456
83
2.3
82
83
6
233
32
13
16
37
1.88
9496--9637
74
1.9
73
86
1
203
27
14
19
38
1.91
25296--25374
21
3.8
21
89
3
115
22
3
24
49
1.66
25289--25379
21
4.3
21
87
2
112
23
3
21
51
1.62
25551--25634
44
1.9
44
82
0
105
27
21
19
32
1.97
28117--28155
2
19.5
2
100
0
78
51
0
0
48
1.00
36365--36402
19
2.0
19
94
0
67
21
34
26
18
1.96
39990--40019
2
15.0
2
100
0
60
50
0
0
50
1.00
40545--40577
12
2.6
13
85
9
50
75
6
12
6
1.16
41285--41337
27
2.0
27
92
0
88
43
3
0
52
1.19
41433--41475
13
3.2
13
83
6
59
39
0
6
53
1.28
43212--43250
2
19.5
2
100
0
78
51
0
0
48
1.00
45074--45108
18
1.9
18
100
0
70
60
11
17
11
1.59
46046--46100
2
29.0
2
89
10
89
50
0
0
49
1.00
45929--46100
19
9.4
19
69
20
100
50
1
4
43
1.33
46178--46213
2
18.0
2
100
0
72
50
0
0
50
1.00
46997--47089
3
31.0
3
84
0
123
39
1
0
59
1.05

Tables:   1

The End!