genome.fa.s9048.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009048.1 Hibiscus syriacus cultivar Beakdansim tig00112459_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  152695

Tables:   1   

This is table  1  of  1  ( 108 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3730--3763	16	2.1	16	94	0	59	32	26	8	32	1.87
7477--7534	27	2.1	29	90	6	93	48	0	0	51	1.00
12900--12931	15	2.1	15	94	0	55	25	18	9	46	1.79
20246--20284	7	5.4	7	90	3	60	79	0	20	0	0.73
21599--21900	83	3.6	83	94	0	525	26	12	21	38	1.89
21855--22170	115	2.8	115	95	0	553	33	13	20	32	1.92
23106--23151	22	2.1	22	84	8	58	54	8	23	13	1.66
22833--23931	113	9.8	111	87	6	1530	37	14	19	28	1.91
23541--23601	17	3.4	17	69	20	52	50	8	22	18	1.73
23908--23968	17	3.6	17	72	16	63	49	8	18	24	1.74
23874--23965	34	2.6	36	91	5	152	50	9	19	20	1.76
23760--24072	142	2.1	148	86	5	451	41	14	18	25	1.88
24311--24374	27	2.4	27	87	7	94	46	0	0	53	1.00
24791--24821	13	2.4	13	94	0	53	74	16	9	0	1.07
25702--25746	24	1.9	23	86	4	63	37	0	0	62	0.96
28642--29019	188	2.0	189	95	3	692	24	13	15	46	1.82
31139--31167	13	2.1	14	93	6	51	68	3	6	20	1.27
31189--31250	26	2.4	25	82	15	81	75	0	11	12	1.04
31186--31286	36	2.7	37	80	11	102	73	0	8	17	1.08
31181--31273	13	7.9	11	71	20	64	73	0	9	17	1.09
31332--31414	12	6.7	12	73	13	55	65	2	3	28	1.22
31368--31414	18	2.6	18	80	10	60	68	2	4	25	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32605--32698	33	2.7	34	80	9	111	32	9	19	38	1.84
32725--32803	34	2.3	34	82	0	95	46	11	18	22	1.81
32824--32989	37	4.5	37	86	3	219	44	12	16	26	1.83
32824--32984	73	2.2	73	96	0	295	45	11	17	25	1.82
33015--33085	21	3.7	21	66	21	64	42	8	18	30	1.80
33021--33116	36	2.6	36	93	1	156	42	12	17	27	1.85
32741--33116	197	1.9	192	88	5	569	43	11	17	27	1.83
33475--33507	14	2.4	14	100	0	66	21	15	33	30	1.94
34359--34585	95	2.6	87	78	14	257	31	19	19	29	1.97
34417--34598	95	1.9	95	92	2	303	29	19	18	32	1.96
37845--37882	13	2.9	13	96	0	67	13	15	42	28	1.85
38411--38473	26	2.5	26	97	2	119	69	0	9	20	1.15
38480--38545	13	5.4	11	74	18	51	72	3	6	18	1.18
38480--38553	26	3.0	25	74	16	64	71	4	6	17	1.24
38676--38739	13	5.2	12	80	14	60	75	0	10	14	1.06
38672--38764	43	2.2	43	81	12	113	72	0	10	17	1.12
38712--38772	18	3.3	17	78	21	61	72	0	8	19	1.10
38683--38779	13	7.5	13	74	19	71	71	0	11	17	1.15
50405--50438	15	2.3	15	89	0	50	17	44	20	17	1.87
59900--59932	2	16.5	2	100	0	66	48	0	0	51	1.00
71960--72081	35	3.4	36	87	5	176	43	18	4	33	1.71
72010--72073	20	3.4	20	66	29	59	45	18	4	31	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76460--76504	23	2.0	23	86	0	63	26	26	26	20	1.99
76619--76712	25	3.8	25	95	0	170	27	24	27	20	1.99
83301--83345	23	2.0	23	81	0	54	28	26	24	20	1.99
89015--89051	16	2.3	17	81	13	51	37	8	0	54	1.30
90063--90224	48	3.5	46	77	12	141	67	11	4	16	1.37
90151--90175	11	2.3	11	100	0	50	92	0	0	8	0.40
90077--90209	44	3.0	43	83	7	133	66	11	3	18	1.35
91029--91060	12	2.7	12	95	0	55	15	50	6	28	1.68
91765--91804	17	2.3	17	95	4	71	50	7	0	42	1.30
92770--92804	16	2.1	18	89	10	56	45	14	0	40	1.45
104352--104444	21	4.6	20	81	4	105	39	18	23	18	1.92
104349--104444	41	2.3	41	96	0	174	40	17	22	18	1.91
104352--104444	20	4.6	20	81	4	105	39	18	23	18	1.92
104371--104505	41	3.3	40	80	6	112	38	20	20	20	1.94
104433--104526	20	4.7	20	80	2	89	34	24	18	23	1.96
105052--105105	19	2.8	19	85	2	72	44	24	20	11	1.83
105073--105113	19	2.2	19	90	0	64	48	26	14	9	1.75
105117--105315	19	10.8	19	77	13	193	13	21	21	44	1.86
105203--105290	33	2.6	33	90	1	131	12	25	23	38	1.90
105269--105315	20	2.3	20	79	13	60	12	25	14	46	1.80
107306--107428	42	2.9	42	80	2	122	22	36	17	22	1.95
107362--107428	21	3.2	21	66	6	55	23	35	20	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108782--108816	13	2.6	14	90	4	54	28	0	25	45	1.54
108769--108817	13	3.7	14	76	10	50	26	0	22	51	1.49
108995--109112	19	6.7	19	66	19	76	13	23	20	42	1.88
108999--109092	33	2.8	33	98	0	179	12	24	19	43	1.85
112880--112916	14	2.6	14	86	0	56	48	21	0	29	1.50
113262--113312	20	2.5	20	96	0	93	33	21	23	21	1.97
113342--113414	14	4.5	15	74	22	60	13	20	19	46	1.83
113338--113404	18	3.8	19	83	16	92	13	22	17	46	1.83
113519--113555	14	2.6	14	86	0	56	48	21	0	29	1.50
115416--115481	20	3.5	19	83	6	89	36	24	24	15	1.93
115471--115527	14	3.8	14	78	17	69	47	26	17	8	1.77
115455--115532	32	2.4	32	97	0	147	46	24	19	10	1.81
115544--115603	18	3.5	18	73	19	65	10	16	23	50	1.75
115555--115618	14	4.4	14	78	16	67	10	15	23	50	1.76
115544--115634	32	2.8	33	91	3	148	12	17	21	48	1.80
115621--115673	20	2.7	20	90	0	79	15	20	24	39	1.91
115730--115764	6	5.7	6	89	3	52	77	20	2	0	0.90
116151--116195	18	2.5	18	85	0	63	15	15	42	26	1.87
117509--117546	20	1.9	20	88	0	58	50	21	15	13	1.78
117810--117853	22	2.0	22	95	0	79	18	15	45	20	1.85
118061--118237	41	4.3	42	84	3	123	20	21	19	38	1.94
118079--118158	21	3.9	21	75	6	65	18	18	20	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118021--118135	20	5.7	20	76	5	79	23	18	23	34	1.96
118104--118257	82	1.9	81	86	6	222	19	23	18	38	1.93
118124--118260	21	6.7	21	77	5	129	18	23	17	40	1.91
118124--118260	41	3.3	41	97	0	256	18	23	17	40	1.91
121256--121297	21	2.0	21	95	0	75	23	45	0	30	1.53
121790--121833	18	2.4	18	92	0	70	18	50	18	13	1.79
124269--124372	24	4.3	23	72	8	73	20	14	16	49	1.80
124283--124375	12	7.8	12	69	9	64	20	13	17	48	1.81
124286--124379	48	2.0	48	89	0	143	21	13	15	48	1.80
124543--124587	2	22.5	2	100	0	90	48	0	0	51	1.00
126470--126503	12	2.8	12	91	8	52	17	17	14	50	1.79
126644--126680	20	1.9	19	89	10	58	51	10	18	18	1.75
127684--127721	20	1.9	20	100	0	76	26	26	10	36	1.89
139611--139670	23	2.7	23	82	14	65	58	5	6	30	1.45
139611--139664	25	2.2	23	83	9	63	59	3	7	29	1.42
139630--139677	21	2.2	23	85	7	64	60	8	8	22	1.52
140491--140515	11	2.3	11	100	0	50	64	0	0	36	0.94
143623--143670	2	24.0	2	100	0	96	50	0	0	50	1.00
143694--143735	19	2.2	20	86	4	59	47	0	2	50	1.14
151578--151686	56	1.9	56	92	0	182	30	23	11	34	1.90

Tables:   1

The End!