genome.fa.s905.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000905.1 Hibiscus syriacus cultivar Beakdansim tig00001787_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98744

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23359--23486	39	3.2	39	61	10	96	43	16	32	7	1.76
23335--23513	81	2.2	81	98	2	344	49	13	30	6	1.67
25130--25183	28	2.0	26	89	7	81	35	16	11	37	1.84
28635--28673	19	2.1	19	95	0	69	17	17	5	58	1.56
30287--30325	17	2.3	17	100	0	78	12	23	46	17	1.83
30321--30390	9	7.3	9	80	12	68	28	27	28	15	1.96
30321--30370	19	2.7	19	85	14	77	26	30	30	14	1.94
30353--30391	21	1.9	21	89	5	62	33	23	25	17	1.96
45245--45304	31	1.9	31	93	0	102	40	6	10	43	1.64
45332--45405	22	3.2	22	73	9	67	54	17	0	28	1.44
45380--45495	32	3.6	32	94	0	196	56	12	0	31	1.36
45359--45724	54	6.6	53	68	21	164	53	13	0	33	1.41
45318--45773	112	4.2	109	72	18	321	53	13	0	33	1.40
45474--45548	22	3.2	23	71	17	73	56	17	0	26	1.42
45520--45627	32	3.7	32	75	23	137	51	12	0	35	1.40
45552--45594	22	2.0	22	100	0	86	51	13	0	34	1.42
45318--45728	134	3.0	134	93	3	669	53	13	0	33	1.41
45554--45602	22	2.2	22	88	3	71	55	14	0	30	1.40
45555--45773	80	2.8	76	90	3	339	53	13	0	33	1.40
45686--45810	22	5.5	22	76	5	133	52	10	0	37	1.36
45503--45773	54	5.1	54	77	10	249	53	13	0	33	1.40
45753--45870	15	7.5	15	84	13	157	53	2	0	44	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45727--45839	52	2.3	49	89	7	167	53	6	0	40	1.26
48362--48400	2	19.5	2	100	0	78	51	0	0	48	1.00
50242--50813	123	4.7	123	92	1	934	25	18	15	40	1.90
50810--51094	37	7.8	35	68	10	133	40	9	16	33	1.81
50810--51062	73	3.5	73	92	0	416	41	9	15	33	1.80
55658--55688	16	1.9	16	93	0	53	38	3	12	45	1.59
57436--57497	25	2.5	26	84	5	83	66	1	8	24	1.28
58952--58987	19	1.9	19	88	5	56	36	0	5	58	1.22
59214--59239	7	3.7	7	100	0	52	23	0	0	76	0.78
59906--59947	15	2.7	15	88	3	57	26	0	2	71	0.98
59914--59959	20	2.2	21	88	3	67	26	0	2	71	0.97
59922--59963	20	2.1	20	91	8	68	23	0	0	76	0.79
60213--60242	15	2.0	15	100	0	60	80	0	0	20	0.72
61312--61352	22	1.9	22	85	5	57	51	4	0	43	1.23
61670--61734	20	3.3	19	69	16	51	27	30	16	24	1.97
61735--61774	21	1.9	21	84	0	53	20	22	15	42	1.88
61772--61865	20	4.7	20	85	7	127	40	20	20	19	1.92
62415--62519	20	5.6	19	74	16	85	50	19	19	11	1.77
62415--62536	20	6.5	19	73	13	74	50	20	18	10	1.77
62532--62649	19	6.1	19	85	3	137	14	21	19	44	1.86
63473--63669	96	2.1	96	100	0	394	32	6	12	49	1.65
64445--64818	94	4.1	94	92	2	573	22	12	18	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64911--64972	20	3.2	20	83	4	90	51	16	22	9	1.73
64935--65072	33	3.9	33	82	8	141	48	26	18	6	1.72
65001--65078	20	3.9	20	96	0	147	50	29	16	3	1.63
65604--65670	21	3.2	21	66	6	55	23	35	19	20	1.95
67010--67045	14	2.6	14	95	0	63	33	0	22	44	1.53
67152--67198	19	2.5	19	92	0	85	44	19	21	14	1.86
67229--67320	19	5.4	18	68	24	74	11	23	18	45	1.83
67229--67320	33	2.8	33	96	0	166	11	23	18	45	1.83
67293--67342	20	2.5	20	81	9	59	16	20	24	40	1.91
70689--70768	20	4.1	20	88	3	119	35	18	18	27	1.95
70761--70811	21	2.4	21	100	0	102	13	17	15	52	1.74
70682--70843	20	8.0	21	82	4	111	28	18	17	35	1.94
70828--70870	21	2.0	21	86	4	59	37	16	25	20	1.93
73089--73127	14	2.7	15	84	7	55	61	0	0	38	0.96
74497--74543	23	2.1	23	84	7	62	42	0	4	53	1.20
75344--75388	19	2.3	20	81	14	58	40	0	4	55	1.20
76197--76231	16	2.1	17	89	5	54	40	11	0	48	1.39
77797--78220	157	2.7	153	83	4	510	30	14	12	42	1.83
79788--79836	2	24.5	2	100	0	98	51	0	0	48	1.00
80223--80269	16	2.9	16	77	20	53	31	4	8	55	1.49
80494--80673	60	3.1	58	80	7	175	41	5	20	32	1.76
80888--80917	12	2.5	12	94	0	51	20	6	20	53	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82386--82455	29	2.4	29	100	0	140	28	15	22	32	1.95
83845--83883	19	2.1	19	85	9	53	58	2	0	38	1.12
88894--88924	15	2.1	15	93	0	53	45	0	0	54	0.99
89067--89132	20	3.3	20	91	2	107	27	21	3	48	1.64
90950--90986	20	1.9	19	89	10	58	45	10	24	18	1.81
91690--91724	2	18.0	2	94	5	63	48	0	0	51	1.00

Tables:   1

The End!