genome.fa.s9050.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009050.1 Hibiscus syriacus cultivar Beakdansim tig00112464_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74856

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1594--1641	7	6.7	7	90	4	78	77	0	22	0	0.78
1593--1642	15	3.4	15	97	2	93	78	0	22	0	0.76
5986--6104	52	2.3	53	86	7	163	36	12	23	27	1.91
8648--9109	73	6.4	73	93	1	786	27	18	20	33	1.96
8648--9109	144	3.2	146	92	1	786	27	18	20	33	1.96
8648--9109	217	2.1	218	92	2	786	27	18	20	33	1.96
11961--12041	30	2.8	29	72	18	71	37	17	7	38	1.78
15130--15187	17	3.1	17	70	25	53	18	27	8	44	1.79
15090--15334	136	1.9	128	86	6	346	29	18	16	35	1.93
16333--16367	13	2.8	12	87	8	52	0	14	2	82	0.77
26986--27025	21	1.9	21	89	0	62	25	40	25	10	1.86
32420--32491	31	2.3	31	88	4	101	37	16	16	29	1.91
34251--34284	17	2.0	17	100	0	68	29	11	17	41	1.85
36495--36610	56	2.0	57	95	3	207	21	28	4	45	1.70
41862--41917	29	1.9	29	92	0	94	28	14	14	42	1.84
41958--42009	26	2.0	26	96	0	95	34	19	9	36	1.84
42567--42592	6	4.3	6	100	0	52	50	0	50	0	1.00
46911--47094	81	2.3	80	80	10	212	33	15	17	33	1.92
47060--47199	40	3.4	40	77	5	145	28	17	15	37	1.91
47087--47218	43	3.1	42	76	11	137	29	19	15	35	1.92
58101--58225	28	4.5	28	76	9	96	24	20	16	37	1.93
58101--58277	83	2.1	83	83	7	218	24	20	18	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58100--58277	82	2.2	82	82	7	218	24	21	17	35	1.95
61735--61809	29	2.6	29	100	0	150	48	6	26	18	1.73
65546--65700	46	3.5	46	87	7	225	40	5	21	32	1.75
68305--68343	21	1.9	20	85	15	53	28	10	20	41	1.85
68382--68447	5	12.8	5	77	17	64	77	3	16	3	1.02
68382--68455	26	2.9	25	77	14	71	77	2	17	2	1.01
68381--68458	16	4.9	15	71	21	61	78	2	16	2	0.98
72375--72602	93	2.5	90	90	4	352	39	7	21	31	1.81
72375--72602	44	5.0	46	94	2	356	39	7	21	31	1.81
72976--73022	21	2.1	22	84	7	60	29	31	14	23	1.95
74403--74441	17	2.2	18	86	4	53	51	5	2	41	1.38
74742--74823	27	3.0	27	72	12	78	2	34	0	63	1.08
74755--74823	20	3.5	20	86	2	86	1	34	0	63	1.03

Tables:   1

The End!