genome.fa.s9051.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009051.1 Hibiscus syriacus cultivar Beakdansim tig00112465_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59372

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
482--539	20	3.0	20	78	12	68	20	32	29	17	1.95
3935--4025	20	5.0	19	77	16	86	21	31	28	17	1.96
4207--4246	20	1.9	21	85	10	55	37	37	10	15	1.80
7915--8133	72	3.0	73	84	5	286	35	24	15	25	1.94
8912--8992	28	3.0	28	80	17	107	41	2	8	46	1.48
9059--9097	15	2.5	15	91	4	60	25	0	5	69	1.09
13809--13862	27	2.0	27	89	3	83	24	16	29	29	1.97
20203--20254	27	2.0	27	88	3	79	25	19	28	26	1.98
21157--21184	14	2.0	14	100	0	56	28	21	0	50	1.49
22864--23001	44	3.1	44	100	0	276	47	18	14	20	1.83
23438--23475	20	1.9	20	88	0	58	26	10	23	39	1.87
24838--24891	2	27.0	2	100	0	108	50	0	0	50	1.00
27472--27519	23	2.1	23	84	0	60	37	12	16	33	1.86
27902--27953	23	2.3	22	90	6	77	44	19	1	34	1.62
27912--27974	23	2.7	23	90	0	90	38	19	6	36	1.77
28298--28384	39	2.2	39	95	0	156	17	13	20	48	1.81
28643--28679	18	2.1	18	89	0	56	51	10	5	32	1.60
28928--28978	25	2.0	25	92	0	84	39	19	7	33	1.81
29218--29280	31	2.0	31	100	0	126	46	12	9	31	1.74
29278--29329	23	2.3	22	90	6	77	44	19	1	34	1.62
29288--29350	23	2.7	23	90	0	90	38	19	6	36	1.77
29708--29779	23	3.2	22	82	4	81	37	20	5	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30135--30186	23	2.3	22	90	6	77	44	19	1	34	1.62
30145--30207	23	2.7	23	90	0	90	38	19	6	36	1.77
30225--30268	21	2.2	20	87	4	61	40	11	9	38	1.73
30573--30635	23	2.7	23	85	0	81	36	19	6	38	1.77
29249--31164	428	4.5	431	96	1	3584	38	12	7	40	1.73
30993--31044	23	2.3	22	90	6	77	44	19	1	34	1.62
31003--31065	23	2.7	23	90	0	90	38	19	6	36	1.77
29249--31160	858	2.2	857	98	1	3715	38	13	7	40	1.73
33644--33987	184	1.9	184	90	0	553	33	16	14	35	1.89
35455--35541	3	29.0	3	77	0	84	24	34	5	35	1.79
35455--35556	18	5.7	18	79	0	87	22	34	6	36	1.81
35463--35553	42	2.2	42	91	0	146	21	35	7	35	1.83
37008--38692	198	8.5	199	98	0	3196	32	16	15	35	1.90
38841--38889	19	2.6	19	93	0	80	57	10	2	30	1.43
43031--43076	19	2.4	19	79	13	58	19	17	10	52	1.74
43198--43247	20	2.5	20	84	12	66	16	14	14	56	1.69
44268--44332	28	2.3	29	78	10	71	46	7	6	40	1.58
47073--47140	2	34.0	2	100	0	136	50	0	0	50	1.00
51446--51550	42	2.5	42	85	1	147	33	20	20	26	1.97
51700--51817	43	2.8	42	80	6	112	30	17	22	28	1.97
51745--51845	43	2.4	44	83	6	127	25	18	24	30	1.98
52013--52143	43	3.0	42	85	2	163	35	19	22	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52268--52323	26	2.2	26	93	3	96	50	17	10	21	1.77
54809--54847	19	1.9	19	90	10	60	51	0	38	10	1.36
55192--55349	52	3.1	52	95	0	291	42	15	8	33	1.77
56405--56495	38	2.3	41	86	7	125	28	25	15	30	1.96
56766--57168	41	9.7	42	84	6	439	33	19	21	25	1.97
56766--57168	125	3.2	123	82	7	476	33	19	21	25	1.97
56767--57152	206	1.9	207	82	5	487	33	19	21	25	1.97

Tables:   1

The End!