Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009053.1 Hibiscus syriacus cultivar Beakdansim tig00112468_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64265

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2807--2874
30
2.2
30
82
10
75
73
1
8
16
1.15
2909--2958
22
2.4
21
84
12
68
74
0
4
22
0.99
14548--14595
23
2.1
23
88
0
69
35
12
18
33
1.89
14990--15049
23
2.6
23
89
0
84
38
15
6
40
1.73
15451--15537
39
2.2
39
95
0
156
17
13
20
48
1.81
15796--15832
18
2.1
18
89
0
56
51
10
5
32
1.60
16127--16177
25
2.0
25
92
0
84
39
19
7
33
1.81
16447--16498
23
2.3
22
90
6
77
44
19
1
34
1.62
16457--16519
23
2.7
23
90
0
90
38
19
6
36
1.77
16808--16866
25
2.4
24
88
2
82
45
15
6
32
1.72
19325--19852
184
2.9
184
95
0
930
33
16
14
36
1.88
21306--21392
3
29.0
3
77
0
84
24
34
5
35
1.79
21306--21407
18
5.7
18
79
0
87
22
34
6
36
1.81
21314--21404
42
2.2
42
91
0
146
21
35
7
35
1.83
22860--24614
198
8.9
199
97
1
3288
30
15
16
37
1.90
24733--24781
19
2.6
19
93
0
80
57
10
2
30
1.43
26569--26634
33
2.0
33
90
0
105
22
48
0
28
1.51
26668--26732
21
3.1
21
80
6
69
15
29
15
40
1.88
28942--28983
19
2.3
18
88
11
68
19
16
11
52
1.74
28947--28992
19
2.4
19
88
3
74
17
17
10
54
1.70
29112--29158
20
2.4
19
86
6
67
17
17
10
55
1.69
29123--29165
19
2.2
20
83
4
52
20
16
9
53
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29221--29654
220
2.0
220
91
5
716
39
7
8
44
1.62
32186--32328
71
2.0
71
100
0
286
30
18
23
27
1.98
32803--32846
21
2.0
21
82
4
52
38
9
18
34
1.82
32868--32904
14
2.6
14
95
0
65
24
21
5
48
1.71
34838--34885
15
3.2
15
84
0
60
25
0
41
33
1.55
34846--34885
18
2.2
18
86
0
53
27
0
40
32
1.57
39018--39065
20
2.4
20
89
0
69
25
16
16
41
1.89
40306--40388
30
2.8
30
84
0
112
16
7
15
60
1.57
40406--40475
35
2.0
35
82
0
86
32
14
8
44
1.75
40437--40491
24
2.3
24
87
3
76
32
16
9
41
1.80
41818--42106
71
4.0
73
87
2
402
53
17
7
21
1.68
41841--42106
144
1.8
146
90
3
437
53
17
7
20
1.68
43838--43885
20
2.4
20
96
0
87
18
20
35
25
1.95
51881--51922
21
2.0
21
86
4
59
28
21
23
26
1.99
53372--53899
59
9.0
59
92
0
860
36
13
21
28
1.91
56695--56745
23
2.3
23
89
3
77
60
19
3
15
1.50
57928--58013
44
2.0
43
88
2
127
29
12
19
38
1.89
58315--58409
38
2.5
38
87
3
138
40
37
10
11
1.76
63937--63978
21
2.0
21
90
0
66
28
28
19
23
1.98
64083--64149
19
3.5
19
83
0
71
37
13
11
37
1.82

Tables:   1

The End!