genome.fa.s9054.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009054.1 Hibiscus syriacus cultivar Beakdansim tig00112469_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53279

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1081--1118	20	1.9	20	88	0	58	39	13	15	31	1.86
1902--1937	17	2.1	18	89	5	56	55	5	2	36	1.38
3702--3742	20	2.0	20	100	0	82	19	31	34	14	1.92
4856--5608	106	7.0	106	90	1	1058	22	17	23	36	1.95
5906--5932	14	1.9	14	100	0	54	22	18	22	37	1.95
6550--6662	58	1.9	58	85	3	156	13	22	12	52	1.73
12790--12833	18	2.5	18	85	3	54	77	2	4	15	1.04
24006--24098	21	4.5	21	78	4	100	39	18	24	17	1.91
24006--24098	41	2.3	41	100	0	186	39	18	24	17	1.91
24025--24159	41	3.3	41	82	6	132	38	20	21	19	1.94
24087--24181	20	4.7	20	78	2	82	35	23	17	23	1.95
24369--24411	22	2.0	22	95	0	77	20	44	16	18	1.87
24676--24713	20	1.9	20	88	0	58	13	15	21	50	1.78
26033--26077	18	2.5	18	88	0	72	26	44	15	13	1.83
26559--26625	20	3.4	20	81	2	73	38	23	22	14	1.92
26614--26671	14	3.9	14	81	16	71	50	22	17	10	1.76
26598--26688	32	2.8	33	93	3	157	48	20	18	12	1.80
26705--26762	14	3.9	14	79	16	71	10	17	24	48	1.78
26689--26778	33	2.8	32	93	3	144	11	18	23	46	1.81
28808--28863	14	3.6	14	74	21	58	46	17	21	14	1.84
28817--28866	14	3.0	17	75	24	61	48	18	22	12	1.80
28789--28866	33	2.4	33	88	0	111	42	20	23	14	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28885--28922	20	1.9	20	94	0	67	15	21	23	39	1.92
29962--30015	24	2.2	24	93	0	90	25	14	20	38	1.91
30190--30214	12	2.1	12	100	0	50	72	0	28	0	0.86
32501--32630	19	7.7	19	65	24	85	42	20	23	14	1.88
32501--32626	33	3.8	33	87	5	193	42	19	23	15	1.89
32502--32633	66	2.0	65	95	1	237	40	19	22	16	1.91
32626--32669	19	2.3	19	92	0	70	15	15	22	45	1.85
32635--32701	19	3.8	19	70	23	65	11	20	20	46	1.82
32808--32844	14	2.6	14	91	0	65	45	24	0	29	1.53
34196--34262	21	3.2	21	68	4	55	19	20	35	23	1.95
34235--34318	42	2.0	42	83	0	105	23	16	38	21	1.93
36334--36432	33	3.0	33	89	1	144	39	26	23	11	1.88
36309--36474	20	9.1	19	74	16	136	43	22	22	12	1.86
36470--36536	19	3.5	19	82	8	64	11	14	25	47	1.79
36481--36533	19	2.7	19	88	2	70	13	16	24	45	1.83
37096--37224	20	6.3	19	73	12	80	19	19	18	42	1.89
37050--37143	20	4.7	20	80	2	89	24	17	24	34	1.96
37071--37205	41	3.3	40	82	6	137	20	19	20	40	1.92
37151--37224	20	3.7	20	78	10	87	17	20	18	43	1.88
37132--37224	41	2.3	41	96	0	168	17	22	18	41	1.90
38432--38481	2	26.0	2	80	8	59	44	4	0	52	1.20
38423--38481	10	6.3	10	75	13	54	42	3	0	54	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38422--38466	18	2.5	18	92	0	72	42	4	0	53	1.21
38512--38639	62	2.0	63	82	13	156	42	5	5	46	1.50
38657--38696	15	2.7	15	84	3	55	50	0	0	50	1.00
38661--38722	27	2.3	27	77	2	72	50	1	3	45	1.27
39689--39761	30	2.4	30	93	0	119	31	24	19	24	1.98
39748--39871	63	2.0	62	87	4	178	32	20	18	29	1.96
39747--39874	31	4.1	31	77	9	134	33	20	17	28	1.96
41225--41269	21	2.1	21	87	0	63	15	24	28	31	1.96
46902--46946	15	3.0	15	80	0	54	60	11	15	13	1.60
47216--47256	21	2.0	21	95	4	75	29	19	19	31	1.96
49522--49575	24	2.2	25	87	9	76	57	1	9	31	1.41
49571--49616	14	3.3	14	82	11	67	84	2	0	13	0.71
49571--49617	7	6.6	7	81	13	60	85	2	0	12	0.70
50938--50995	31	1.9	30	89	3	89	39	3	3	53	1.35

Tables:   1

The End!