Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009057.1 Hibiscus syriacus cultivar Beakdansim tig00112472_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47786
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Found at i:1339 original size:15 final size:15
Alignment explanation
Indices: 1321--1368 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
1311 ATTTTTTCAA
1321 TTTAATTACTTAATT
1 TTTAATTACTTAATT
*
1336 TTTAAATTAC-TATTAT
1 TTT-AATTACTTAAT-T
1352 TTTAATTACTATAATT
1 TTTAATTACT-TAATT
1368 T
1 T
1369 ATTTTATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
15 12 0.44
16 12 0.44
17 3 0.11
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.58
Consensus pattern (15 bp):
TTTAATTACTTAATT
Found at i:1382 original size:30 final size:29
Alignment explanation
Indices: 1321--1383 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 29
1311 ATTTTTTCAA
1321 TTTAATTACTTAATTTTTAAATTACTATTAT
1 TTTAATTACTTAATTTTT--ATTACTATTAT
*
1352 TTTAATTACTATAATTTATT-TTATTATTAT
1 TTTAATTACT-TAATTT-TTATTACTATTAT
1382 TT
1 TT
1384 ATGTATGTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
30 11 0.38
31 10 0.34
32 6 0.21
33 2 0.07
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (29 bp):
TTTAATTACTTAATTTTTATTACTATTAT
Found at i:4321 original size:18 final size:19
Alignment explanation
Indices: 4298--4333 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
4288 AAAATAGGTT
4298 TATAATATAT-ATAATTTA
1 TATAATATATAATAATTTA
*
4316 TATAATATTTAATAATTT
1 TATAATATATAATAATTT
4334 TGATTAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TATAATATATAATAATTTA
Found at i:10325 original size:19 final size:19
Alignment explanation
Indices: 10303--10341 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
10293 TTTAATTTAC
10303 TATTATAATTATAA-ATATT
1 TATTATAATT-TAAGATATT
*
10322 TATTGTAATTTAAGATATT
1 TATTATAATTTAAGATATT
10341 T
1 T
10342 TCTATTTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (19 bp):
TATTATAATTTAAGATATT
Found at i:14394 original size:15 final size:15
Alignment explanation
Indices: 14374--14403 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
14364 CATCATTTCT
14374 AGAATTGTAGCAATC
1 AGAATTGTAGCAATC
14389 AGAATTGTAGCAATC
1 AGAATTGTAGCAATC
14404 CATTTATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.20, T:0.27
Consensus pattern (15 bp):
AGAATTGTAGCAATC
Found at i:26769 original size:2 final size:2
Alignment explanation
Indices: 26762--26789 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
26752 AATATAAATG
26762 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26790 ATTCAATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:27651 original size:18 final size:20
Alignment explanation
Indices: 27628--27670 Score: 54
Period size: 18 Copynumber: 2.2 Consensus size: 20
27618 CTTGATTTCC
*
27628 ATTCAATTTCATT-CAT-AA
1 ATTCAACTTCATTACATCAA
*
27646 ATTCAACTTCTTTACATCAA
1 ATTCAACTTCATTACATCAA
27666 ATTCA
1 ATTCA
27671 TGTTCTTCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 11 0.52
19 3 0.14
20 7 0.33
ACGTcount: A:0.37, C:0.21, G:0.00, T:0.42
Consensus pattern (20 bp):
ATTCAACTTCATTACATCAA
Found at i:29710 original size:25 final size:25
Alignment explanation
Indices: 29682--29730 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
29672 TAATTAAATC
* *
29682 ATTAATAATTATGTTAAGAGATTGT
1 ATTAATAATCATATTAAGAGATTGT
*
29707 ATTAATAGTCATATTAAGAGATTG
1 ATTAATAATCATATTAAGAGATTG
29731 GATTTCGTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.41, C:0.02, G:0.16, T:0.41
Consensus pattern (25 bp):
ATTAATAATCATATTAAGAGATTGT
Found at i:29854 original size:28 final size:26
Alignment explanation
Indices: 29819--29872 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
29809 ATATATGATT
*
29819 TAATTAATTAATTTAAATTAAGATTTAA
1 TAATTAA-TAATTTAAATCAA-ATTTAA
*
29847 TAATTAATAATTTTAATCAAATTTAA
1 TAATTAATAATTTAAATCAAATTTAA
29873 GTGAACAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 6 0.25
27 11 0.46
28 7 0.29
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (26 bp):
TAATTAATAATTTAAATCAAATTTAA
Found at i:32938 original size:17 final size:17
Alignment explanation
Indices: 32905--32950 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
32895 TATTTAGTTC
32905 TTAATATTTATAT-ATTAT
1 TTAA-ATTTA-ATCATTAT
*
32923 TTCAATTTAATCATTAT
1 TTAAATTTAATCATTAT
32940 TTAAATTTAAT
1 TTAAATTTAAT
32951 TTAATAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 2 0.08
17 20 0.80
18 3 0.12
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (17 bp):
TTAAATTTAATCATTAT
Found at i:32954 original size:22 final size:23
Alignment explanation
Indices: 32921--32964 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
32911 TTTATATATT
*
32921 ATTTCAATTTAATCATTATTTAA
1 ATTTCAATTTAATAATTATTTAA
*
32944 ATTT-AATTTAATAATTTTTTA
1 ATTTCAATTTAATAATTATTTA
32965 TTTAATCGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.57
Consensus pattern (23 bp):
ATTTCAATTTAATAATTATTTAA
Found at i:43718 original size:22 final size:24
Alignment explanation
Indices: 43691--43740 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
43681 GGTTAGGGAT
*
43691 CAATTTCTA-A-CAAAAGTCGCTG
1 CAATTTCTATACCAAAAGTCCCTG
43713 CAATTTCTATTACCAAAAGTCCCTG
1 CAATTTCTA-TACCAAAAGTCCCTG
43738 CAA
1 CAA
43741 GAACAGATGC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 9 0.38
24 1 0.04
25 14 0.58
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.28
Consensus pattern (24 bp):
CAATTTCTATACCAAAAGTCCCTG
Found at i:45931 original size:22 final size:22
Alignment explanation
Indices: 45887--45931 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
45877 ATTACATAAC
**
45887 TTTAAAAAAAGTATAGATTCTT
1 TTTAAAAAAAGTATAGACACTT
* *
45909 TTTATAAAAAGTATGGACACTT
1 TTTAAAAAAAGTATAGACACTT
45931 T
1 T
45932 CAACATATCA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.42, C:0.07, G:0.11, T:0.40
Consensus pattern (22 bp):
TTTAAAAAAAGTATAGACACTT
Found at i:46707 original size:180 final size:182
Alignment explanation
Indices: 45958--47786 Score: 2804
Period size: 180 Copynumber: 10.2 Consensus size: 182
45948 TTTTACCTTT
* * * *
45958 TTTAAAAGATAAGAAGTTATATCGTCAATAAAGTGTCGATAC-TTATAAAAA-GTATCGATCAAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
*
46021 AACAATATAACAGGTAAAAATGAAT-A-AAAACC-GTCTCGAAATGACAAAACATGT-AAGCGCT
66 AACAATATAACAGGTAAAAAT--ATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCT
* *
46082 ACTGGTTATGTTGAAAGTGTCGATAA-TT-TTATACGTATCGAC-CTTTTGGAA
129 ACCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
*
46133 TTTAAAAGAGAA-AGAGTTTTAGCGCCAATAAAGTGTCGATACTTTAT-AAAATGTATCGATCCA
1 TTTAAAAGAGAAGA-AGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCA
* * * *
46196 TAATAATATAACATGTAAAATTATGACAAAATCGGTCTCGAAATGACAAAACAGGTAAAGCGCTA
65 TAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTA
*
46261 CCGGTTATGTTGAAAGTGTCGATAA-TTATTATAAGTATCGATACTTTTGGAA
130 CCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
* * * *
46313 TTT-AAATAG-AGAAGTTATAGCACCAAT--AGTGTCGATATTTTATAAAAATGTATAGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
*
46374 AAC-A-ATAACAGGTTAAAAATATGAC-AAACCGATCTCG-AATGACAAAACAGGTAAAGCGCTA
66 AACAATATAACAGG-TAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTA
* *
46435 CCGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTAGAA
130 CCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
*
46488 TTTAAAAGAGAAGAAGTTATATCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
46553 AACAATAT-ACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTA-
66 AACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
* *
46616 CGGTTAT-TTGAAAGTGTCGATAATTTTATTGTACGTATCGACACTTTTGGAA
131 CGGTTATGTTGAAAGTGTCGATAA-TTTATTATAAGTATCGACACTTTTGGAA
**
46668 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATTAATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
* *
46733 AACAATATAACAGGTATAAATATGGCAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
66 AACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
* ** *
46798 CGGTTATGTTGAAAGTGTCAATAATTTATTATACTTATGGACACTTTTGGAA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
* * *
46850 TTTAAAAGAGAAG-AGTTATAGAGCCAATAGAGTGTCGATACTTTAT-AAAATTTATCGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
* *
46913 AACAATATAACATGTAAAAATATGACAAAATCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
66 AACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
46978 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCG--ACTTTTGGAA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
* * * *
47028 -TTAATAAGAGAATAAGTTATAGAGCCAATAACGTGTCGATACTTTATAAAAATGTATCGATCAA
1 TTTAA-AAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCA
* *
47092 TAACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCACTA
65 TAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTA
** * * *
47157 CATGTTATATTGAAAGTGTCGATAATTTATTATAAGTATCGACGCTTTTGAAA
130 CCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
*
47210 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAAATATATCGATCCA
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTAT-AAAAATGTATCGATCCA
*
47275 TAACAATATAACAGGTAATAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTA
65 TAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTA
* *
47340 CCAGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
130 CCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
47393 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
*
47458 AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
66 AACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
*
47523 CGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
* *
47575 -TTAATA-AG-AGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATATATCGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
* * * *
47637 AACAATATAACATGTAAAAATATGACAAAATCAGTCTCGAAATGACAAAACATGTAAAGCGCTAC
66 AACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
*
47702 CGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
* *
47754 -TTAATAAAAGAAGAAGTTATAGCGTCAATAAAG
1 TTTAA-AAGAGAAGAAGTTATAGCGCCAATAAAG
Statistics
Matches: 1524, Mismatches: 95, Indels: 63
0.91 0.06 0.04
Matches are distributed among these distances:
174 51 0.03
175 86 0.06
176 70 0.05
177 59 0.04
178 65 0.04
179 283 0.19
180 359 0.24
181 117 0.08
182 244 0.16
183 190 0.12
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (182 bp):
TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
AACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
Found at i:46958 original size:361 final size:363
Alignment explanation
Indices: 45958--47786 Score: 2818
Period size: 361 Copynumber: 5.1 Consensus size: 363
45948 TTTTACCTTT
* * * *
45958 TTTAAAAGATAAGAAGTTATATCGTCAATAAAGTGTCGATAC-TTATAAAAA-GTATCGATCAAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
*
46021 AACAATATAACAGGTAAAAATGAAT-A-AAAACC-GTCTCGAAATGACAAAACATGT-AAGCGCT
66 AACAATATAACAGGTAAAAAT--ATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCT
* *
46082 ACTGGTTATGTTGAAAGTGTCGATAA-TT-TTATACGTATCGAC-CTTTTGGAATTTAAAAGAGA
129 ACCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAATTTAAAAGAG-
* * *
46144 AAGAGTTTTAGCGCCAATAAAGTGTCGATACTTTAT-AAAATGTATCGATCCATAATAATATAAC
193 AAGAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATATATCGATCCATAACAATATAAC
*
46208 ATGTAAAATTATGACAAAATCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGGTTATGTTG
258 ATGTAAAAATATGACAAAATCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGGTTATGTTG
*
46273 AAAGTGTCGATAA-TTATTATAAGTATCGATACTTTTGGAA
323 AAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
* * * *
46313 TTT-AAATAG-AGAAGTTATAGCACCAAT--AGTGTCGATATTTTATAAAAATGTATAGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
*
46374 AAC-A-ATAACAGGTTAAAAATATGAC-AAACCGATCTCG-AATGACAAAACAGGTAAAGCGCTA
66 AACAATATAACAGG-TAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTA
* *
46435 CCGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTAGAATTTAAAAGAGAA
130 CCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAATTTAAAAGAGAA
* *
46500 GAAGTTATATCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATAT-ACA
195 G-AGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATATATCGATCCATAACAATATAACA
* *
46564 GGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTA-CGGTTAT-TTGA
259 TGTAAAAATATGACAAAATCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGA
* *
46627 AAGTGTCGATAATTTTATTGTACGTATCGACACTTTTGGAA
324 AAGTGTCGATAA-TTTATTATAAGTATCGACACTTTTGGAA
**
46668 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATTAATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
* *
46733 AACAATATAACAGGTATAAATATGGCAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
66 AACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
* ** *
46798 CGGTTATGTTGAAAGTGTCAATAATTTATTATACTTATGGACACTTTTGGAATTTAAAAGAGAAG
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAATTTAAAAGAGAAG
* * *
46863 AGTTATAGAGCCAATAGAGTGTCGATACTTTAT-AAAATTTATCGATCCATAACAATATAACATG
196 AGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATATATCGATCCATAACAATATAACATG
46927 TAAAAATATGACAAAATCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGAAA
261 TAAAAATATGACAAAATCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGAAA
46992 GTGTCGATAATTTATTATAAGTATCG--ACTTTTGGAA
326 GTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
* * * *
47028 -TTAATAAGAGAATAAGTTATAGAGCCAATAACGTGTCGATACTTTATAAAAATGTATCGATCAA
1 TTTAA-AAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCA
* *
47092 TAACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCACTA
65 TAACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTA
** * * *
47157 CATGTTATATTGAAAGTGTCGATAATTTATTATAAGTATCGACGCTTTTGAAATTTAAAAGAGAA
130 CCGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAATTTAAAAGAGAA
47222 GAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAAATATATCGATCCATAACAATATAAC
195 G-AGTTATAGCGCCAATAAAGTGTCGATACTTTAT-AAAAATATATCGATCCATAACAATATAAC
* * * * *
47287 AGGTAATAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCAGATATGTTG
258 ATGTAAAAATATGACAAAATCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGGTTATGTTG
47352 AAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
323 AAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
47393 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
1 TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
*
47458 AACAATATAACATGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
66 AACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
*
47523 CGGATATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA-TTAATAAGAG-A
131 CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAATTTAA-AAGAGAA
47586 -AGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATATATCGATCCATAACAATATAACAT
195 GAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATATATCGATCCATAACAATATAACAT
* * *
47650 GTAAAAATATGACAAAATCAGTCTCGAAATGACAAAACATGTAAAGCGCTACCGGATATGTTGAA
260 GTAAAAATATGACAAAATCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGAA
47715 AGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
325 AGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
* *
47754 -TTAATAAAAGAAGAAGTTATAGCGTCAATAAAG
1 TTTAA-AAGAGAAGAAGTTATAGCGCCAATAAAG
Statistics
Matches: 1349, Mismatches: 91, Indels: 62
0.90 0.06 0.04
Matches are distributed among these distances:
350 2 0.00
351 38 0.03
352 53 0.04
353 46 0.03
354 27 0.02
355 131 0.10
356 29 0.02
357 17 0.01
359 38 0.03
360 220 0.16
361 288 0.21
362 138 0.10
363 132 0.10
364 5 0.00
365 181 0.13
366 4 0.00
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (363 bp):
TTTAAAAGAGAAGAAGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATGTATCGATCCAT
AACAATATAACAGGTAAAAATATGACAAAACCGGTCTCGAAATGACAAAACAGGTAAAGCGCTAC
CGGTTATGTTGAAAGTGTCGATAATTTATTATAAGTATCGACACTTTTGGAATTTAAAAGAGAAG
AGTTATAGCGCCAATAAAGTGTCGATACTTTATAAAAATATATCGATCCATAACAATATAACATG
TAAAAATATGACAAAATCGGTCTCGAAATGACAAAACAGGTAAAGCGCTACCGGTTATGTTGAAA
GTGTCGATAATTTATTATAAGTATCGACACTTTTGGAA
Done.